Hystricomorpha DUPLICATION Hystricomorpha ANCESTRAL SPECIES 45 ENSGT00940000160166 #8 ENSGT00940000159107 #9 ENSGT00940000161919 #10 ENSGT00940000160804 #11 ENSGT00940000162648 #12 ENSGT00390000018324 #14 ENSGT00390000003453.b.b #15 ENSGT00510000047366 #16 ENSGT00510000048901 #17 ENSGT01030000234542.b.a.a.b.a.b.l #18 ENSGT01030000234542.b.a.a.a.b.b #19 ENSGT00390000009491.c #20 ENSGT00950000182891.a.a.b.a.b.a #21 ENSGT00940000159989.f ##22 ENSGT00950000182891.a.a.b.a.b.b.a ##21 ENSGT00940000159989.e #22 ENSGT00390000016136 #23 ENSGT00940000160806 #24 ENSGT00940000157062 #25 ENSGT00390000010652.B #26 ENSGT00940000160472 #27 ENSGT00390000004097.b #28 ENSGT00940000161073 ENSGT00390000014184 ENSGT00940000156223 ENSGT00940000154879 ENSGT00390000008274 ENSGT00390000002869 ENSGT00940000160475 ENSGT00940000161854 ENSGT00940000161706 Naked mole-rat female MODERN SPECIES 10 CHRNB2 (ENSHGLG00000007150) #7 ENSHGLG00000007304 #8 ENSHGLG00000035218 #9 IL6R (ENSHGLG00000032250) #10 ATP8B2 (ENSHGLG00000018554) #11 AQP10 (ENSHGLG00000018126) #12 ENSHGLG00000018499 #13 HAX1 (ENSHGLG00000018827) #14 UBAP2L (ENSHGLG00000009352) #15 ENSHGLG00000043186 #16 CFAP141 (ENSHGLG00000034346) #17 ENSHGLG00000035415 #18 ENSHGLG00000010502 #19 NUP210L (ENSHGLG00000039681) #20 RPS27 (ENSHGLG00000007748) #21 RAB13 (ENSHGLG00000008749) #22 JTB (ENSHGLG00000040053) #23 CREB3L4 (ENSHGLG00000033275) #24 SLC39A1 (ENSHGLG00000007034) #25 CRTC2 (ENSHGLG00000008041) #26 DENND4B (ENSHGLG00000006184) #27 ENSHGLG00000015467 #28 ENSHGLG00000034978 #29 ENSHGLG00000038740 #30 ENSHGLG00000046497 #31 PGLYRP4 (ENSHGLG00000008250) #32 PGLYRP3 (ENSHGLG00000033466) #33 PRR9 (ENSHGLG00000032412) #34 ENSHGLG00000020537 #35 ENSHGLG00000012992 #36 ENSHGLG00000044563 #37 Hystricomorpha_a ANCESTRAL SPECIES 131 ENSGT00950000182891.a.a.b.a.b.b.a ##21 ENSGT00940000159989.e #22 Hystricomorpha_b ANCESTRAL SPECIES 173 ENSGT00950000182891.a.a.b.a.b.b.a ##21 ENSGT00940000159989.e #22 Degu MODERN SPECIES 73 KCNN3 (ENSODEG00000011444) ADAR (ENSODEG00000011111) CHRNB2 (ENSODEG00000011916) #7 ENSODEG00000020162 UBE2Q1 (ENSODEG00000012607) #8 SHE (ENSODEG00000010544) #9 ATP8B2 (ENSODEG00000010646) #11 ENSODEG00000010731 #14 ENSODEG00000011367 #15 ENSODEG00000012117 #15 ENSODEG00000011467 #16 CFAP141 (ENSODEG00000011475) #17 TPM3 (ENSODEG00000011815) #19 NUP210L (ENSODEG00000011746) #20 ENSODEG00000012394 ##21 ENSODEG00000012634 #22 JTB (ENSODEG00000012805) #23 CREB3L4 (ENSODEG00000013013) #24 SLC39A1 (ENSODEG00000012305) #25 CRTC2 (ENSODEG00000012430) #26 DENND4B (ENSODEG00000013675) #27 ENSODEG00000019967 GATAD2B (ENSODEG00000012298) #28 SLC27A3 (ENSODEG00000012359) INTS3 (ENSODEG00000012581) NPR1 (ENSODEG00000013147) ENSODEG00000011732 SNAPIN (ENSODEG00000011863) ENSODEG00000011754 S100A1 (ENSODEG00000012345) S100A13 (ENSODEG00000013081) Hystricomorpha ANCESTRAL SPECIES 45 ENSGT00940000157243 ENSGT00940000158417.b #7 ENSGT00940000160166 #8 ENSGT00940000159107 #9 ENSGT00940000161919 #10 ENSGT00940000160804 #11 ENSGT00940000162648 #12 ENSGT00390000018324 #14 ENSGT00390000003453.b.b #15 ENSGT00510000047366 #16 ENSGT00510000048901 #17 ENSGT01030000234542.b.a.a.b.a.b.l #18 ENSGT01030000234542.b.a.a.a.b.b #19 ENSGT00390000009491.c #20 ENSGT00950000182891.a.a.b.a.b.a #21 ENSGT00940000159989.f ##22 ENSGT00950000182891.a.a.b.a.b.b.a ##21 ENSGT00940000159989.e #22 ENSGT00390000016136 #23 ENSGT00940000160806 #24 ENSGT00940000157062 #25 ENSGT00390000010652.B #26 ENSGT00940000160472 #27 ENSGT00390000004097.b #28 ENSGT00940000161073 ENSGT00390000014184 ENSGT00940000156223 ENSGT00940000154879 ENSGT00390000008274 ENSGT00390000002869 ENSGT00940000160475 Hystricomorpha_a ANCESTRAL SPECIES 54 ENSGT00950000182904.a.a.a ENSGT00940000157243 ENSGT00940000158417.b #7 ENSGT00940000160166 #8 ENSGT00940000159107 #9 ENSGT00940000161919 #10 ENSGT00940000160804 #11 ENSGT00940000162648 #12 ENSGT00390000018324 #14 ENSGT00390000003453.b.b #15 ENSGT00510000047366 #16 ENSGT00510000048901 #17 ENSGT01030000234542.b.a.a.a.b.b #19 ENSGT00390000009491.c #20 ENSGT00950000182891.a.a.b.a.b.a #21 ENSGT00940000159989.f ##22 ENSGT00390000016136 #23 ENSGT00940000160806 #24 ENSGT00940000157062 #25 ENSGT00390000010652.B #26 ENSGT00940000160472 #27 ENSGT00390000004097.b #28 ENSGT00940000161073 ENSGT00390000014184 ENSGT00940000156223 ENSGT00940000154879 ENSGT00390000008274 ENSGT00390000002869 ENSGT00940000160475 ENSGT00940000161854 ENSGT00940000161706 Hystricomorpha_b ANCESTRAL SPECIES 61 ENSGT00950000182904.a.a.a ENSGT00940000157243 ENSGT00940000158417.b #7 ENSGT00940000160166 #8 ENSGT00940000159107 #9 ENSGT00940000161919 #10 ENSGT00940000160804 #11 ENSGT00940000162648 #12 ENSGT00390000018324 #14 ENSGT00390000003453.b.b #15 ENSGT00510000047366 #16 ENSGT00510000048901 #17 ENSGT01030000234542.b.a.a.a.b.b #19 ENSGT00390000009491.c #20 ENSGT00950000182891.a.a.b.a.b.a #21 ENSGT00940000159989.f ##22 ENSGT00390000016136 #23 ENSGT00940000160806 #24 ENSGT00940000157062 #25 ENSGT00390000010652.B #26 ENSGT00940000160472 #27 ENSGT00390000004097.b #28 ENSGT00940000161073 ENSGT00390000014184 ENSGT00940000156223 ENSGT00940000154879 ENSGT00390000008274 ENSGT00390000002869 ENSGT00940000160475 ENSGT00940000161854 ENSGT00940000161706 Degu DUPLICATION Degu DUPLICATION Degu DUPLICATION Degu DUPLICATION Degu MODERN SPECIES 304 BMP15 (ENSODEG00000000854) ENSODEG00000000886 ENSODEG00000001005 DGKK (ENSODEG00000001078) AKAP4 (ENSODEG00000001223) ENSODEG00000018669 ENSODEG00000001449 CLCN5 (ENSODEG00000001495) ENSODEG00000001517 USP27X (ENSODEG00000001537) ENSODEG00000018712 ENSODEG00000018701 ENSODEG00000018700 ##22 PPP1R3F (ENSODEG00000001563) FOXP3 (ENSODEG00000001628) CCDC22 (ENSODEG00000001642) ENSODEG00000001692 SYP (ENSODEG00000001808) PRICKLE3 (ENSODEG00000001845) PLP2 (ENSODEG00000001003) MAGIX (ENSODEG00000001017) ENSODEG00000018621 WDR45 (ENSODEG00000001091) PRAF2 (ENSODEG00000001165) CCDC120 (ENSODEG00000001185) Degu MODERN SPECIES 61 TMEM178A (ENSODEG00000010204) MAP4K3 (ENSODEG00000011426) CDKL4 (ENSODEG00000010265) SOS1 (ENSODEG00000012567) ENSODEG00000011783 ARHGEF33 (ENSODEG00000010871) ENSODEG00000009626 DHX57 (ENSODEG00000011626) GEMIN6 (ENSODEG00000011245) SRSF7 (ENSODEG00000010029) ENSODEG00000011016 GALM (ENSODEG00000009740) ENSODEG00000009674 ENSODEG00000011052 ENSODEG00000009915 ENSODEG00000011434 ##22 ATL2 (ENSODEG00000011141) CYP1B1 (ENSODEG00000012353) ENSODEG00000019986 QPCT (ENSODEG00000009887) ENSODEG00000011270 PRKD3 (ENSODEG00000010640) ENSODEG00000011006 ENSODEG00000011002 ENSODEG00000010503 SULT6B1 (ENSODEG00000009825) ENSODEG00000010489 ENSODEG00000019711 GPATCH11 (ENSODEG00000011404) HEATR5B (ENSODEG00000009045) STRN (ENSODEG00000009292) Degu MODERN SPECIES 111 FBLN5 (ENSODEG00000008614) SERPINA6 (ENSODEG00000008142) SERPINA10 (ENSODEG00000008574) PPP4R4 (ENSODEG00000008810) ENSODEG00000008703 ENSODEG00000007700 OTUB2 (ENSODEG00000008797) ASB2 (ENSODEG00000007460) FAM181A (ENSODEG00000011589) PRIMA1 (ENSODEG00000011335) UNC79 (ENSODEG00000007579) ENSODEG00000008501 ENSODEG00000009446 ENSODEG00000008400 ENSODEG00000010541 ENSODEG00000007889 ##22 UBR7 (ENSODEG00000008732) GON7 (ENSODEG00000008846) LYSET (ENSODEG00000014062) ITPK1 (ENSODEG00000007795) CHGA (ENSODEG00000008252) GOLGA5 (ENSODEG00000008897) LGMN (ENSODEG00000009324) RIN3 (ENSODEG00000010091) SLC24A4 (ENSODEG00000008367) CPSF2 (ENSODEG00000008682) ENSODEG00000019811 ENSODEG00000010647 ENSODEG00000009488 SERPINA1 (ENSODEG00000010255) SERPINA11 (ENSODEG00000010365) Degu MODERN SPECIES 117 EP400 (ENSODEG00000008132) PUS1 (ENSODEG00000008248) ULK1 (ENSODEG00000008683) MMP17 (ENSODEG00000008852) SFSWAP (ENSODEG00000008020) ENSODEG00000008349 STX2 (ENSODEG00000009934) RIMBP2 (ENSODEG00000009979) PIWIL1 (ENSODEG00000010629) ENSODEG00000019685 ENSODEG00000008825 SLC15A4 (ENSODEG00000009561) ENSODEG00000009405 ENSODEG00000009816 ENSODEG00000009713 ENSODEG00000010443 ##22 ENSODEG00000019612 AACS (ENSODEG00000008915) DHX37 (ENSODEG00000009929) ENSODEG00000019559 NCOR2 (ENSODEG00000009536) CCDC92 (ENSODEG00000008834) DNAH10 (ENSODEG00000009996) ATP6V0A2 (ENSODEG00000009400) ENSODEG00000010094 ENSODEG00000010222 ENSODEG00000009632 ENSODEG00000010829 RILPL1 (ENSODEG00000010907) SNRNP35 (ENSODEG00000019870) ENSODEG00000011545 Degu MODERN SPECIES 76 ENSODEG00000016804 ##22 GJC3 (ENSODEG00000016841) AZGP1 (ENSODEG00000016741) ZKSCAN1 (ENSODEG00000016790) ZSCAN21 (ENSODEG00000017115) ENSODEG00000020419 ZNF3 (ENSODEG00000016822) COPS6 (ENSODEG00000016873) ENSODEG00000017079 ENSODEG00000016551 AP4M1 (ENSODEG00000016717) TAF6 (ENSODEG00000016755) CNPY4 (ENSODEG00000016875) MBLAC1 (ENSODEG00000020533) ENSODEG00000016612 ENSODEG00000016889 Long-tailed chinchilla MODERN SPECIES 252 ADAR (ENSCLAG00000005402) CHRNB2 (ENSCLAG00000005132) #7 UBE2Q1 (ENSCLAG00000005048) #8 SHE (ENSCLAG00000004987) #9 ENSCLAG00000004750 IL6R (ENSCLAG00000004093) #10 ATP8B2 (ENSCLAG00000003593) #11 AQP10 (ENSCLAG00000004886) #12 ENSCLAG00000004829 #14 UBAP2L (ENSCLAG00000003903) #15 ENSCLAG00000012981 #16 CFAP141 (ENSCLAG00000011799) #17 TPM3 (ENSCLAG00000010440) #19 NUP210L (ENSCLAG00000007281) #20 RPS27 (ENSCLAG00000006809) #21 RAB13 (ENSCLAG00000006603) ##22 JTB (ENSCLAG00000009842) #23 CREB3L4 (ENSCLAG00000008566) #24 SLC39A1 (ENSCLAG00000008243) #25 CRTC2 (ENSCLAG00000007860) #26 DENND4B (ENSCLAG00000005313) #27 GATAD2B (ENSCLAG00000004814) #28 SLC27A3 (ENSCLAG00000004445) INTS3 (ENSCLAG00000003620) NPR1 (ENSCLAG00000004130) SNAPIN (ENSCLAG00000003233) ILF2 (ENSCLAG00000003140) CHTOP (ENSCLAG00000002957) S100A1 (ENSCLAG00000002883) S100A13 (ENSCLAG00000002812) S100A14 (ENSCLAG00000006079) Guinea pig MODERN SPECIES 10 ADAR (ENSCPOG00000005463) ENSCPOG00000013155 #7 UBE2Q1 (ENSCPOG00000001472) #8 SHE (ENSCPOG00000001163) #9 IL6R (ENSCPOG00000033327) #10 ENSCPOG00000037176 ATP8B2 (ENSCPOG00000014022) #11 AQP10 (ENSCPOG00000039313) #12 HAX1 (ENSCPOG00000007307) #14 ENSCPOG00000021439 #15 C1orf43 (ENSCPOG00000006131) #16 CFAP141 (ENSCPOG00000039253) #17 TPM3 (ENSCPOG00000032186) #19 ENSCPOG00000007264 #20 ENSCPOG00000024660 ##21 RAB13 (ENSCPOG00000011491) ##22 JTB (ENSCPOG00000012906) #23 CREB3L4 (ENSCPOG00000034503) #24 SLC39A1 (ENSCPOG00000039162) #25 CRTC2 (ENSCPOG00000012884) #26 DENND4B (ENSCPOG00000012910) #27 GATAD2B (ENSCPOG00000010326) #28 SLC27A3 (ENSCPOG00000009466) INTS3 (ENSCPOG00000009450) NPR1 (ENSCPOG00000025084) ILF2 (ENSCPOG00000005835) SNAPIN (ENSCPOG00000032621) CHTOP (ENSCPOG00000005829) S100A1 (ENSCPOG00000005826) S100A13 (ENSCPOG00000005824) S100A14 (ENSCPOG00000013796)