Sarcopterygii ANCESTRAL SPECIES 4 ENSGT00940000160515 ENSGT00940000153299 ENSGT00940000154344.a ENSGT00940000153669.b ENSGT00940000157029 ENSGT00730000111366 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000163347 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000165126 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT01100000263502.A.a.a.a.a ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 Tetrapoda ANCESTRAL SPECIES 20 ENSGT00940000153669.b ENSGT00940000157029 ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000157452 ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT01100000263502.A.a.a.a.a ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 Amniota ANCESTRAL SPECIES 24 ENSGT00940000153669.b ENSGT00940000157029 ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000157452 ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT01100000263502.A.a.a.a.a ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 Mammalia ANCESTRAL SPECIES 44 ENSGT00940000157029 ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000157452 ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Theria ANCESTRAL SPECIES 34 ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000161825 ENSGT00940000157452 ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Eutheria ANCESTRAL SPECIES 16 ENSGT00940000161825 ENSGT00940000163633 ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 Boreoeutheria ANCESTRAL SPECIES 11 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00910000146020 ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 Laurasiatheria ANCESTRAL SPECIES 26 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00910000146020 ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Laurasiatheria_a ANCESTRAL SPECIES 10 ENSGT00910000146020 ENSGT01090000261020.B ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000162864.a #8 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT01020000231229 #10 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Artiodactyla ANCESTRAL SPECIES 9 ENSGT00910000146020 ENSGT01090000261020.B ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000162864.a #8 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT01020000231229 #10 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.a #26 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 Artiodactyla_a ANCESTRAL SPECIES 9 ENSGT00910000146020 ENSGT01090000261020.B ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000162864.a #8 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT01020000231229 #10 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.a #26 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 Artiodactyla_b ANCESTRAL SPECIES 19 ENSGT01090000261020.B ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000162864.a #8 ENSGT00950000183087.A.b.a ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT01020000231229 #10 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.a #26 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 Pecora ANCESTRAL SPECIES 28 ENSGT00910000146020 ENSGT01090000261020.B ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000162864.a.d.a ##23 ENSGT00940000160971 #9 ENSGT00390000004226.b.a ##15 ENSGT00940000162721 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226.a #15 ENSGT00390000004226.b.b ##15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.a #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Percora_a ANCESTRAL SPECIES 30 ENSGT00910000146020 ENSGT01090000261020.B ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000162864.a.d.a ##23 ENSGT00940000160971 #9 ENSGT00390000004226.b.a ##15 ENSGT00940000162721 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226.a #15 ENSGT00390000004226.b.b ##15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.a #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902.p #30 ENSGT01100000263512.b.b.b #31 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Bovidae ANCESTRAL SPECIES 29 ENSGT00940000161248 ENSGT01030000234964.A.a.b ENSGT00390000004226.b.b ##15 ENSGT00390000004226.a #15 ENSGT00390000002886.b.b #12 ENSGT00940000162359 #11 ENSGT00940000162721 ENSGT00390000004226.b.a ##15 ENSGT01030000234964.A.a.a ENSGT00940000162864.a.c #8 ENSGT00950000183087.A.b.a ENSGT00940000160971 #9 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.a #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902.p #30 ENSGT01100000263512.b.b.b #31 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104.pb.b #35 ENSGT00390000016655.a.b #36 Bovinae ANCESTRAL SPECIES 42 ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00910000146020 ENSGT01090000261020.B ENSGT00940000165847 ENSGT00940000161248 ENSGT01030000234964.A.a.b ENSGT00390000004226.b.a ##15 ENSGT01030000234964.A.a.a ENSGT00940000162864.a.c #8 ENSGT00950000183087.A.b.a ENSGT00940000160971 #9 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.a #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902.p #30 ENSGT01100000263512.b.b.b #31 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104.pb.b #35 ENSGT00390000016655.a.b #36 Bos ANCESTRAL SPECIES 36 ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00910000146020 ENSGT01090000261020.B ENSGT00940000165847 ENSGT00940000161248 ENSGT01030000234964.A.a.b ENSGT01030000234964.A.a.a.d ENSGT00940000162864.a.c #8 ENSGT00950000183087.A.b.a ENSGT00940000160971 #9 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00390000010165.i.b.a.b #21 ENSGT00940000162313 #22 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.a #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902.p #30 ENSGT01100000263512.b.b.b #31 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT01100000263480.a.a.a.a.a.a.b.b.b ENSGT00940000153460.c.b.j #34 ENSGT00510000047104.pb.b #35 Bos_b ANCESTRAL SPECIES 31 ENSGT00940000162864.a.c #8 ENSGT00950000183087.A.b.a ENSGT00940000160971 #9 ENSGT00910000144363.g.b.a.a.a ENSGT00940000162721 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226.a.a.b #13 ENSGT00390000004226.a.a.a.a #14 ENSGT00390000004226.a.b.a ##15 ENSGT00940000160625.k.b #16 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00390000010165.i.b.a.b #21 ENSGT00940000162313 #22 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902.p #30 ENSGT01100000263512.b.b.b #31 ENSGT00950000182941.b.a.b #32 ENSGT00940000154833 #33 ENSGT01100000263480.a.a.a.a.a.a.b.b.b ENSGT00940000153460.c.b.j #34 ENSGT00510000047104.pb.b #35 ENSGT00390000016655.a.b #36 ENSGT00940000157318.h.b.a.b Cow MODERN SPECIES 174 ENSBTAG00000051652 #8 ENSBTAG00000054414 #9 ENSBTAG00000052553 #10 SOX3 (ENSBTAG00000049481) #11 ENSBTAG00000014397 #12 CXHXorf66 (ENSBTAG00000049080) #13 ENSBTAG00000049553 #14 ENSBTAG00000048333 #15 ENSBTAG00000051112 #16 ENSBTAG00000050922 #17 ENSBTAG00000054134 #18 ENSBTAG00000049774 #19 F9 (ENSBTAG00000004003) #20 ENSBTAG00000052373 #21 FGF13 (ENSBTAG00000020194) #22 MAGEA11 (ENSBTAG00000018323) #23 ZIC3 (ENSBTAG00000021413) #24 TM9SF5 (ENSBTAG00000054951) #25 RBMX (ENSBTAG00000013308) #26 ENSBTAG00000054684 #27 CD40LG (ENSBTAG00000051078) #28 VGLL1 (ENSBTAG00000001880) #29 HTATSF1 (ENSBTAG00000055212) #30 ENSBTAG00000054559 #31 ENSBTAG00000051318 #32 FHL1 (ENSBTAG00000018513) #33 SLC9A6 (ENSBTAG00000009523) #34 MMGT1 (ENSBTAG00000025297) #35 INTS6L (ENSBTAG00000008993) #36 Bos_a ANCESTRAL SPECIES ENSGT00940000162313 #22 Domestic yak MODERN SPECIES 69 ENSBGRG00000012699 SLITRK4 (ENSBGRG00000012800) #9 ENSBGRG00000012828 ENSBGRG00000012864 ##15 ENSBGRG00000012915 LDOC1 (ENSBGRG00000012930) ENSBGRG00000013037 SOX3 (ENSBGRG00000013074) #11 ENSBGRG00000013322 #12 ENSBGRG00000013335 #14 ENSBGRG00000013390 ##15 ENSBGRG00000013454 ##17 ATP11C (ENSBGRG00000013594) #18 MCF2 (ENSBGRG00000016309) #19 F9 (ENSBGRG00000017397) #20 FGF13 (ENSBGRG00000017651) #22 ENSBGRG00000017892 #21 ENSBGRG00000017943 ENSBGRG00000017990 #23 ENSBGRG00000018033 ZIC3 (ENSBGRG00000018094) #24 ENSBGRG00000018234 #25 GPR101 (ENSBGRG00000018481) RBMXL1 (ENSBGRG00000018516) #26 ARHGEF6 (ENSBGRG00000018751) #27 CD40LG (ENSBGRG00000019129) #28 ENSBGRG00000019321 #29 HTATSF1 (ENSBGRG00000019364) #30 BRS3 (ENSBGRG00000019515) #31 ENSBGRG00000019586 #32 ENSBGRG00000020148 #33 Caprinae ANCESTRAL SPECIES 44 ENSGT00940000162864.a.c #8 ENSGT01030000234964.A.a.a ENSGT00390000004226.b.a ##15 ENSGT00940000162721 ENSGT01010000223978 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226.a #15 ENSGT00390000004226.b.b ##15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00390000005569.x.a.a.a.a.b.h ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.a #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00940000154268.e.b.b.a.a ENSGT00390000009902.o ##30 ENSGT01100000263512.b.b.b #31 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 Goat MODERN SPECIES 30 ENSCHIG00000020888 ENSCHIG00000024386 IGSF1 (ENSCHIG00000008777) ENSCHIG00000000062 SLITRK4 (ENSCHIG00000019228) #9 ENSCHIG00000018613 ENSCHIG00000000195 ENSCHIG00000000231 ##15 LDOC1 (ENSCHIG00000019266) ENSCHIG00000000337 SOX3 (ENSCHIG00000000368) #11 ENSCHIG00000000404 #12 ATP11C (ENSCHIG00000009648) #18 MCF2 (ENSCHIG00000009737) #19 F9 (ENSCHIG00000013903) #20 FGF13 (ENSCHIG00000016286) #22 ENSCHIG00000018935 ZIC3 (ENSCHIG00000021756) #24 ENSCHIG00000007648 ENSCHIG00000009593 #25 ENSCHIG00000000060 ENSCHIG00000000095 ARHGEF6 (ENSCHIG00000000132) #27 CD40LG (ENSCHIG00000000168) #28 ENSCHIG00000018808 ENSCHIG00000000243 #29 BRS3 (ENSCHIG00000000280) #31 HTATSF1 (ENSCHIG00000000312) ##30 ENSCHIG00000000348 #32 ENSCHIG00000000379 MOSPD1 (ENSCHIG00000000414) Cetacea ANCESTRAL SPECIES ENSGT00940000162313 #22 Odontoceti ANCESTRAL SPECIES ENSGT00940000162313 #22 Odontoceti_a ANCESTRAL SPECIES ENSGT00940000162313 #22 Odontoceti_b ANCESTRAL SPECIES 52 ENSGT00940000162313 #22 ENSGT00940000162864.b #23 Monodontidae ANCESTRAL SPECIES 19 ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00950000183087.A.b.a.e ENSGT00940000160971 #9 ENSGT00950000183375 ENSGT00940000164798 ENSGT01020000231229 #10 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00530000064050.j ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902.k #30 ENSGT01100000263512.b.b.b #31 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 ENSGT00390000014547.d.a.b Beluga whale MODERN SPECIES FMR1 (ENSDLEG00000000712) SLITRK2 (ENSDLEG00000000769) ENSDLEG00000000774 SLITRK4 (ENSDLEG00000000783) #9 LDOC1 (ENSDLEG00000000802) ENSDLEG00000000805 ENSDLEG00000000818 ENSDLEG00000000822 #10 SOX3 (ENSDLEG00000000843) #11 ENSDLEG00000000855 #12 ATP11C (ENSDLEG00000000892) #18 ENSDLEG00000001046 MCF2 (ENSDLEG00000001070) #19 F9 (ENSDLEG00000001177) #20 ENSDLEG00000001192 FGF13 (ENSDLEG00000001212) #22 ENSDLEG00000001240 #23 ZIC3 (ENSDLEG00000001271) #24 GPR101 (ENSDLEG00000001280) GPR101 (ENSDLEG00000001283) RBMX (ENSDLEG00000001291) ##26 ARHGEF6 (ENSDLEG00000001336) #27 CD40LG (ENSDLEG00000001439) #28 VGLL1 (ENSDLEG00000001448) #29 HTATSF1 (ENSDLEG00000001466) #30 BRS3 (ENSDLEG00000001472) #31 MAP7D3 (ENSDLEG00000001486) #32 FHL1 (ENSDLEG00000001531) #33 ENSDLEG00000001544 #34 ENSDLEG00000001558 #34 MMGT1 (ENSDLEG00000001581) #35 Camelidae ANCESTRAL SPECIES 51 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00950000183189.a.b.b ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Alpaca MODERN SPECIES 311 MCF2 (ENSVPAG00000009718) #19 F9 (ENSVPAG00000009716) #20 ENSVPAG00000009715 #22 Suina ANCESTRAL SPECIES 7 ENSGT00950000183189.a.b.b ENSGT00910000146020 ENSGT01090000261020.B ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000162864.a #8 ENSGT00940000160971 #9 ENSGT00390000010165.i.b.b.a ##21 ENSGT00940000164798 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 ENSGT00390000014547.d.a.b ENSGT00940000160108 Chacoan peccary DUPLICATION Chacoan peccary MODERN SPECIES 15 SLITRK4 (ENSCWAG00000012982) #9 ENSCWAG00000012967 ##21 LDOC1 (ENSCWAG00000012948) ENSCWAG00000012915 SOX3 (ENSCWAG00000012837) #11 ENSCWAG00000012813 #12 ENSCWAG00000012778 #15 ENSCWAG00000012723 ENSCWAG00000012705 ATP11C (ENSCWAG00000012057) #18 MCF2 (ENSCWAG00000007508) #19 F9 (ENSCWAG00000007270) #20 FGF13 (ENSCWAG00000007218) #22 ENSCWAG00000007195 #23 Chacoan peccary DUPLICATION Chacoan peccary MODERN SPECIES 147 ENSCWAG00000002952 #22 ENSCWAG00000002959 #22 Chacoan peccary MODERN SPECIES 147 ENSCWAG00000002959 #22 ENSCWAG00000002952 #22 Laurasiatheria_b ANCESTRAL SPECIES 10 ENSGT00950000183189.a.b.b ENSGT00910000146020 ENSGT01090000261020.B ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT01020000231229 #10 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 Carnivora ANCESTRAL SPECIES 11 ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00910000146020 ENSGT01090000261020.B ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 Caniformia ANCESTRAL SPECIES 22 ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00910000146020 ENSGT01090000261020.B ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Canidae ANCESTRAL SPECIES 50 ENSGT01090000261020.B ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000165902 ENSGT00390000004380.e.a ENSGT00940000160971 #9 ENSGT00940000164798.c ENSGT00940000162721 ENSGT00940000164798.d ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864.b #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00940000168213 Canis_lupus ANCESTRAL SPECIES 22 ENSGT00890000139436.A.b.d ENSGT01090000261020.B ENSGT00940000165847 ENSGT00940000161248 ENSGT00390000004380.e.a.b ENSGT00940000160971 #9 ENSGT00940000164798.c ENSGT00940000162721 ENSGT00940000164798.d ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864.b #23 ENSGT00390000005102.a.a ENSGT00940000160788 #24 ENSGT00940000163139 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT01080000257620 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 Dingo MODERN SPECIES 383 ENSCAFG00020024379 ENSCAFG00020024390 ENSCAFG00020024392 SLITRK2 (ENSCAFG00020024421) ENSCAFG00020024425 SLITRK4 (ENSCAFG00020024429) #9 ENSCAFG00020024432 LDOC1 (ENSCAFG00020024434) ENSCAFG00020024437 SOX3 (ENSCAFG00020024439) #11 ENSCAFG00020024444 #12 ENSCAFG00020024450 #15 ATP11C (ENSCAFG00020024462) #18 MCF2 (ENSCAFG00020024494) #19 F9 (ENSCAFG00020024498) #20 FGF13 (ENSCAFG00020024504) #22 ENSCAFG00020024507 #23 ENSCAFG00020024509 ZIC3 (ENSCAFG00020024510) #24 ENSCAFG00020024513 GPR101 (ENSCAFG00020024514) ENSCAFG00020024518 #25 RBMX (ENSCAFG00020024552) ##26 ARHGEF6 (ENSCAFG00020024572) #27 CD40LG (ENSCAFG00020024627) #28 ENSCAFG00020024629 VGLL1 (ENSCAFG00020024634) #29 HTATSF1 (ENSCAFG00020024635) #30 BRS3 (ENSCAFG00020024639) #31 ADGRG4 (ENSCAFG00020024646) ENSCAFG00020024654 #32 Red fox MODERN SPECIES 75 ENSVVUG00000000672 SLITRK2 (ENSVVUG00000000503) ENSVVUG00000000464 ENSVVUG00000000415 ENSVVUG00000000396 ENSVVUG00000000346 SLITRK4 (ENSVVUG00000000328) #9 ENSVVUG00000000288 ENSVVUG00000000181 LDOC1 (ENSVVUG00000000153) ENSVVUG00000000104 CUNHXorf66 (ENSVVUG00000021515) #15 ATP11C (ENSVVUG00000021465) #18 MCF2 (ENSVVUG00000021407) #19 F9 (ENSVVUG00000021395) #20 FGF13 (ENSVVUG00000021385) #22 ENSVVUG00000021381 ENSVVUG00000021380 ZIC3 (ENSVVUG00000021378) #24 Caniformia_b ANCESTRAL SPECIES 27 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT01090000261020.B ENSGT00940000165847 ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000162864.b #23 ENSGT00940000160788.a #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 Mustelinae ANCESTRAL SPECIES 148 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864.b #23 ENSGT00940000160788.a #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 American mink MODERN SPECIES 83 SLITRK4 (ENSNVIG00000022627) #9 ENSNVIG00000022631 LDOC1 (ENSNVIG00000022636) ENSNVIG00000022637 SOX3 (ENSNVIG00000022644) #11 ENSNVIG00000000062 #12 ENSNVIG00000000077 #15 ATP11C (ENSNVIG00000000083) #18 MCF2 (ENSNVIG00000000331) #19 FA9 (ENSNVIG00000000999) #20 FGF13 (ENSNVIG00000001046) #22 ENSNVIG00000001107 #23 ENSNVIG00000001135 ZIC3 (ENSNVIG00000001184) #24 GPR101 (ENSNVIG00000001200) ENSNVIG00000001206 #25 RBMX (ENSNVIG00000001236) ##26 ARHGEF6 (ENSNVIG00000001293) #27 CD40LG (ENSNVIG00000001334) #28 ENSNVIG00000001366 #29 HTATSF1 (ENSNVIG00000001372) #30 BRS3 (ENSNVIG00000001386) #31 ADGRG4 (ENSNVIG00000001403) ENSNVIG00000001467 #32 FHL1 (ENSNVIG00000001503) #33 SLC9A6 (ENSNVIG00000001615) #34 Ursidae ANCESTRAL SPECIES ENSGT00940000162313 #22 Ursus ANCESTRAL SPECIES 188 ENSGT00940000160971 #9 ENSGT00940000164798 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000163347 ENSGT00940000162313 #22 ENSGT00940000162864.b #23 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744.b ENSGT00950000182941.b.a.d #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 American black bear MODERN SPECIES 889 FGF13 (ENSUAMG00000003874) #22 ENSUAMG00000003867 #23 ENSUAMG00000003862 Laurasiatheria_c ANCESTRAL SPECIES ENSGT00940000162313 #22 Chiroptera ANCESTRAL SPECIES 48 ENSGT00940000160971 #9 ENSGT00940000162313 #22 ENSGT00940000162864.b #23 ENSGT00940000161248 ENSGT00940000165847 ENSGT00950000183189.a.b.b ENSGT00390000007953 ENSGT00950000182974.a.a.a.a ENSGT00970000197053 ENSGT00940000156803 ENSGT00390000012182 ENSGT00940000161825 ENSGT00940000158388 ENSGT00940000163633 ENSGT00730000111366 ENSGT00940000157029 ENSGT00940000153669.b Microchiroptera ANCESTRAL SPECIES 45 ENSGT00940000160971 #9 ENSGT00940000162313 #22 ENSGT00940000162864.b #23 ENSGT00940000161248 ENSGT00940000165847 ENSGT00950000183189.a.b.b ENSGT00390000007953 ENSGT00950000182974.a.a.a.a ENSGT00970000197053 ENSGT00940000156803 ENSGT00390000012182 ENSGT00940000161825 ENSGT00940000158388 ENSGT00730000111366 ENSGT00940000157029 ENSGT00940000153669.b ENSGT00940000154344.a Microbat MODERN SPECIES 939 ENSMLUG00000030224 SOX3 (ENSMLUG00000000946) #11 ENSMLUG00000000942 ENSMLUG00000029680 ENSMLUG00000027972 ENSMLUG00000027548 #12 ENSMLUG00000013633 #15 ATP11C (ENSMLUG00000008018) #18 MCF2 (ENSMLUG00000011218) #19 F9 (ENSMLUG00000011202) #20 ENSMLUG00000027963 FGF13 (ENSMLUG00000005625) #22 ENSMLUG00000005622 #23 ZIC3 (ENSMLUG00000011691) #24 ENSMLUG00000025989 GPR101 (ENSMLUG00000010221) ENSMLUG00000029450 ENSMLUG00000013209 ##26 ENSMLUG00000007996 ARHGEF6 (ENSMLUG00000007783) #27 CD40LG (ENSMLUG00000007777) #28 ENSMLUG00000009256 #29 ENSMLUG00000009234 #30 BRS3 (ENSMLUG00000010461) #31 ENSMLUG00000014341 #32 FHL1 (ENSMLUG00000014336) #33 SLC9A6 (ENSMLUG00000014329) #34 Euarchontoglires ANCESTRAL SPECIES 11 ENSGT00940000156803 ENSGT00970000197053 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 Primates ANCESTRAL SPECIES 65 ENSGT00940000162313 #22 ENSGT00940000162864 #23 Haplorrhini ANCESTRAL SPECIES ENSGT00940000162313 #22 Simiiformes ANCESTRAL SPECIES ENSGT00940000162313 #22 Catarrhini ANCESTRAL SPECIES ENSGT00940000162313 #22 Hominoidea ANCESTRAL SPECIES 29 ENSGT00940000160971 #9 ENSGT00940000163956.c ENSGT00940000165112 ENSGT00940000164535.a ENSGT00940000164535.b ENSGT00940000164981 ENSGT00940000162721 ENSGT01010000223978 ENSGT00390000013647 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000153500.a.a.k.a.b.c ENSGT00940000162539 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000165003 ENSGT01000000214719 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00940000153476.b.m.b ENSGT00950000182941.b.a #32 Hominidae ANCESTRAL SPECIES 8 ENSGT00940000160971 #9 ENSGT00940000163956.c ENSGT00940000165112 ENSGT00940000164535.a ENSGT00940000164535.b ENSGT00940000164981 ENSGT00910000146818 ENSGT01010000223978 ENSGT00390000013647 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000153500.a.a.k.a.b.c ENSGT00940000162539 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00940000153476.b.m.b ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00910000147399 Homo/Pan/Gorilla group ANCESTRAL SPECIES 9 ENSGT00940000160971 #9 ENSGT00940000163956.c ENSGT00940000165112 ENSGT00940000164535.a ENSGT00940000164535.b ENSGT00940000164981 ENSGT00910000146818 ENSGT01010000223978 ENSGT00390000013647 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000153500.a.a.k.a.b.c ENSGT00940000162539 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000165003 ENSGT01000000214719 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00940000153476.b.m.b ENSGT00950000182941.b.a #32 Homo/Pan group ANCESTRAL SPECIES 9 ENSGT00940000163956.d ENSGT00940000160971 #9 ENSGT00940000163956.c ENSGT00940000165112 ENSGT00940000164535.a ENSGT00940000164535.b ENSGT00940000164981 ENSGT00910000146818 ENSGT00730000111796 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000153500.a.a.k.a.b.c ENSGT00940000162539 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000165003 ENSGT01000000214719 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00940000153476.b.m.b ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 Pan ANCESTRAL SPECIES 6 ENSGT00940000165112 ENSGT00940000164535.a ENSGT00940000164535.b ENSGT00940000164981 ENSGT00910000146818 ENSGT00730000111796 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00940000153147.m.a.a.a.a.b.a.a.a ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00910000148205 ENSGT00950000183029.B.c.b.b.a.d ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000153500.a.a.k.a.b.c ENSGT00940000162539 ENSGT00940000165733 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000165003 ENSGT01000000214719 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00940000153476.b.m.b ENSGT00950000182941.b.a #32 Bonobo MODERN SPECIES 369 SPANXN3 (ENSPPAG00000038428) ENSPPAG00000036672 MAGEC2 (ENSPPAG00000026474) ENSPPAG00000026388 ENSPPAG00000030721 ENSPPAG00000026521 ENSPPAG00000025131 ENSPPAG00000023819 #12 ENSPPAG00000037228 CXorf66 (ENSPPAG00000038036) #15 ATP11C (ENSPPAG00000043527) #18 MCF2 (ENSPPAG00000034608) #19 F9 (ENSPPAG00000039904) #20 ENSPPAG00000037956 ENSPPAG00000028602 FGF13 (ENSPPAG00000035766) #22 ZIC3 (ENSPPAG00000030013) #24 ENSPPAG00000037272 GPR101 (ENSPPAG00000016837) ENSPPAG00000036722 RBMX (ENSPPAG00000028409) ##26 ENSPPAG00000022910 ENSPPAG00000034899 ARHGEF6 (ENSPPAG00000028700) #27 CD40LG (ENSPPAG00000042603) #28 VGLL1 (ENSPPAG00000035917) #29 HTATSF1 (ENSPPAG00000024268) #30 BRS3 (ENSPPAG00000031235) #31 ADGRG4 (ENSPPAG00000040242) ENSPPAG00000025451 MAP7D3 (ENSPPAG00000033016) #32 Human MODERN SPECIES 1827 MAGEC2 (ENSG00000046774) MAGEC1 (ENSG00000155495) MAGEC3 (ENSG00000165509) SPANXD (ENSG00000196406) SPANXA2 (ENSG00000203926) SPANXA1 (ENSG00000198021) SPANXC (ENSG00000198573) LDOC1 (ENSG00000182195) SPANXB1 (ENSG00000227234) SOX3 (ENSG00000134595) #11 ENSG00000230707 #12 CXorf66 (ENSG00000203933) #15 ATP11C (ENSG00000101974) #18 MCF2 (ENSG00000101977) #19 F9 (ENSG00000101981) #20 FGF13 (ENSG00000129682) #22 ZIC3 (ENSG00000156925) #24 GPR101 (ENSG00000165370) RBMX (ENSG00000147274) ##26 ARHGEF6 (ENSG00000129675) #27 CD40LG (ENSG00000102245) #28 VGLL1 (ENSG00000102243) #29 HTATSF1 (ENSG00000102241) #30 BRS3 (ENSG00000102239) #31 ADGRG4 (ENSG00000156920) MAP7D3 (ENSG00000129680) #32 FHL1 (ENSG00000022267) #33 SLC9A6 (ENSG00000198689) #34 MMGT1 (ENSG00000169446) #35 SAGE1 (ENSG00000181433) ##36 CT45A10 (ENSG00000269586) ##36 Cercopithecidae ANCESTRAL SPECIES ENSGT00940000162313 #22 Rhinopithecus ANCESTRAL SPECIES ENSGT00940000162313 #22 Golden snub-nosed monkey MODERN SPECIES 3054 FGF13 (ENSRROG00000039580) #22 Black snub-nosed monkey MODERN SPECIES 1835 FGF13 (ENSRBIG00000035787) #22 Cercopithecinae ANCESTRAL SPECIES 14 ENSGT00940000162273 ENSGT00570000079168.b.b.b ENSGT00950000183175.B.b ENSGT01030000234633.C.b ENSGT00940000153912.B ENSGT00940000155192 ENSGT00940000160064.b ENSGT00910000144252 ENSGT00940000160278 ENSGT00940000155292 ENSGT00940000155919 ENSGT00950000182815.a.a.a.a.a ENSGT00530000063174.a.j ENSGT00390000001063 ENSGT00390000014293.a ENSGT00940000162313 #22 ENSGT00940000161376 ENSGT00940000154194 ENSGT00940000158205 ENSGT00940000155196.q.a ENSGT00940000162645 ENSGT00910000146913 ENSGT00940000163645 ENSGT00940000155234.b.k.a.a ENSGT00940000155234.b.k.a.b ENSGT00940000162708 ENSGT00510000048844 ENSGT00530000063169.a.a ENSGT00390000011412 ENSGT00730000111645 ENSGT00910000144274 Cercopithecinae_a ANCESTRAL SPECIES 13 ENSGT00940000162273 ENSGT00570000079168.b.b.b ENSGT00950000183175.B.b ENSGT01030000234633.C.b ENSGT00940000153912.B ENSGT00940000155192 ENSGT00940000160064.b ENSGT00910000144252 ENSGT00940000160278 ENSGT00940000155292 ENSGT00940000155919 ENSGT00950000182815.a.a.a.a.a ENSGT00530000063174.a.j ENSGT00390000001063 ENSGT00390000014293.a ENSGT00940000162313 #22 ENSGT00940000161376 ENSGT00940000154194 ENSGT00940000158205 ENSGT00940000155196.q.a ENSGT00940000162645 ENSGT00910000146913 ENSGT00940000163645 ENSGT00940000155234.b.k.a.a ENSGT00940000155234.b.k.a.b ENSGT00940000162708 ENSGT00510000048844 ENSGT00530000063169.a.a ENSGT00390000011412 ENSGT00730000111645 ENSGT00910000144274 Cercopithecinae_b ANCESTRAL SPECIES 6 ENSGT00940000160022 ENSGT00940000156074 ENSGT00940000157059 ENSGT00940000157103 ENSGT00940000156728 ENSGT00390000018121 ENSGT00900000143503 ENSGT00940000154245.B ENSGT00940000159024 ENSGT00390000012178.h ENSGT00940000157266 ENSGT00940000160193 ENSGT00390000014316.c.a ENSGT00550000074940 ENSGT00390000014293.a ENSGT00940000162313 #22 ENSGT00940000161376 ENSGT00940000154194 ENSGT00940000158205 ENSGT00940000155196.q.a ENSGT00940000162645 ENSGT00940000163645 ENSGT00910000146913 ENSGT00940000155234.b.k.a.a ENSGT00940000162708 ENSGT00510000048844 ENSGT00530000063169.a.a ENSGT00390000011412 ENSGT00730000111645 ENSGT00910000144274 ENSGT00390000013159 Cercopithecinae_d ANCESTRAL SPECIES 62 ENSGT00940000160193 ENSGT00390000014316.c.a ENSGT00550000074940 ENSGT00390000014293.a ENSGT00940000162313 #22 ENSGT00940000161376 ENSGT00940000154194 ENSGT00940000158205 ENSGT00940000155196.q.a ENSGT00940000162645 ENSGT00940000163645 ENSGT00910000146913 ENSGT00940000155234.b.k.a.a ENSGT00940000162708 ENSGT00510000048844 ENSGT00530000063169.a.a ENSGT00390000011412 ENSGT00730000111645 ENSGT00910000144274 ENSGT00390000013159 Sooty mangabey MODERN SPECIES 348 GABRG1 (ENSCATG00000043822) GNPDA2 (ENSCATG00000034581) GUF1 (ENSCATG00000040932) RAP1GDS1 (ENSCATG00000023952) ENSCATG00000043985 #22 TSPAN5 (ENSCATG00000040343) EIF4E (ENSCATG00000037138) METAP1 (ENSCATG00000038797) ADH5 (ENSCATG00000043644) ADH4 (ENSCATG00000037962) ADH6 (ENSCATG00000033505) ENSCATG00000040845 ADH1A (ENSCATG00000036045) ADH7 (ENSCATG00000040095) C4orf17 (ENSCATG00000007938) ENSCATG00000031003 MTTP (ENSCATG00000034810) C4orf54 (ENSCATG00000045211) DAPP1 (ENSCATG00000039739) LAMTOR3 (ENSCATG00000037771) Drill MODERN SPECIES 1529 GNPDA2 (ENSMLEG00000036479) GUF1 (ENSMLEG00000033225) RAP1GDS1 (ENSMLEG00000027721) ENSMLEG00000038655 #22 TSPAN5 (ENSMLEG00000040517) APOF (ENSMLEG00000041243) STAT2 (ENSMLEG00000011483) IL23A (ENSMLEG00000016985) PAN2 (ENSMLEG00000037388) CNPY2 (ENSMLEG00000028786) CS (ENSMLEG00000015463) COQ10A (ENSMLEG00000031831) ANKRD52 (ENSMLEG00000030021) SLC39A5 (ENSMLEG00000043323) NABP2 (ENSMLEG00000042811) ADD2 (ENSMLEG00000039648) TGFA (ENSMLEG00000032348) Macaca ANCESTRAL SPECIES 18 ENSGT00940000162273 ENSGT00570000079168.b.b.b ENSGT00950000183175.B.b ENSGT01030000234633.C.b ENSGT00940000153912.B ENSGT00940000155192 ENSGT00940000160064.b ENSGT00910000144252 ENSGT00940000160278 ENSGT00940000155292 ENSGT00940000155919 ENSGT00950000182815.a.a.a.a.a ENSGT00530000063174.a.j ENSGT00390000001063 ENSGT00390000014293.a ENSGT00940000162313 #22 ENSGT00940000161376 ENSGT00940000154194 ENSGT00940000158205 ENSGT00940000155196.q.a.c ENSGT00940000162645 ENSGT00910000146913 ENSGT00940000163645 ENSGT00940000155234.b.k.a.a ENSGT00940000155234.b.k.a.b ENSGT00940000162708 ENSGT00510000048844 ENSGT00530000063169.a.a ENSGT00390000011412 ENSGT00730000111645 ENSGT00910000144274 Pig-tailed macaque MODERN SPECIES 126 STPG2 (ENSMNEG00000044221) RAP1GDS1 (ENSMNEG00000032772) ENSMNEG00000036581 #22 TSPAN5 (ENSMNEG00000041179) ENSMNEG00000013566 METAP1 (ENSMNEG00000036157) ENSMNEG00000029974 ADH4 (ENSMNEG00000039108) ENSMNEG00000038839 ADH6 (ENSMNEG00000035946) ADH1A (ENSMNEG00000024750) ADH7 (ENSMNEG00000033055) C4orf17 (ENSMNEG00000035254) TRMT10A (ENSMNEG00000044321) MTTP (ENSMNEG00000033442) C4orf54 (ENSMNEG00000036400) DAPP1 (ENSMNEG00000045303) LAMTOR3 (ENSMNEG00000033312) Vervet Monkey MODERN SPECIES 26 MMRN1 (ENSCSAG00000004223) ENSCSAG00000004217 ENSCSAG00000004212 ENSCSAG00000004207 ENSCSAG00000004205 ENSCSAG00000004203 ATOH1 (ENSCSAG00000000408) SMARCAD1 (ENSCSAG00000004186) HPGDS (ENSCSAG00000004182) PDLIM5 (ENSCSAG00000004173) BMPR1B (ENSCSAG00000004147) UNC5C (ENSCSAG00000004138) PDHA2 (ENSCSAG00000000407) STPG2 (ENSCSAG00000004134) RAP1GDS1 (ENSCSAG00000004128) ENSCSAG00000000406 #22 TSPAN5 (ENSCSAG00000004123) EIF4E (ENSCSAG00000004122) METAP1 (ENSCSAG00000004120) ADH5 (ENSCSAG00000004118) ADH4 (ENSCSAG00000004116) ADH6 (ENSCSAG00000004112) ADH1B (ENSCSAG00000004110) ADH7 (ENSCSAG00000004106) C4orf17 (ENSCSAG00000004103) TRMT10A (ENSCSAG00000004098) MTTP (ENSCSAG00000004095) C4orf54 (ENSCSAG00000000405) DAPP1 (ENSCSAG00000004090) DNAJB14 (ENSCSAG00000004085) ENSCSAG00000000404 Tarsier MODERN SPECIES 2733 FGF13 (ENSTSYG00000006047) #22 Strepsirrhini ANCESTRAL SPECIES 109 ENSGT00940000162313 #22 ENSGT00940000162864 #23 Bushbaby MODERN SPECIES 232 SOX3 (ENSOGAG00000025781) #11 ENSOGAG00000034324 ENSOGAG00000028331 ENSOGAG00000031982 ENSOGAG00000034439 #12 ENSOGAG00000030168 ENSOGAG00000033659 ENSOGAG00000029856 ENSOGAG00000015306 #15 ATP11C (ENSOGAG00000002088) #18 MCF2 (ENSOGAG00000000864) #19 F9 (ENSOGAG00000000863) #20 ENSOGAG00000028887 ENSOGAG00000029354 ENSOGAG00000030480 FGF13 (ENSOGAG00000031744) #22 ENSOGAG00000027112 #23 ENSOGAG00000025744 ZIC3 (ENSOGAG00000011700) #24 GPR101 (ENSOGAG00000006478) ENSOGAG00000032990 #25 Euarchontoglires_A ANCESTRAL SPECIES 11 ENSGT00390000012182 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Glires ANCESTRAL SPECIES 10 ENSGT00390000012182 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Lagomorpha ANCESTRAL SPECIES ENSGT00940000162313 #22 Pika MODERN SPECIES 1005 ENSOPRG00000011441 #22 Rodentia ANCESTRAL SPECIES 10 ENSGT00390000012182 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Rodentia_B ANCESTRAL SPECIES 16 ENSGT00390000012182 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00700000106222 ENSGT00940000162721 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Kangaroo rat MODERN SPECIES 408 Ids (ENSDORG00000026027) Aff2 (ENSDORG00000015215) Fmr1 (ENSDORG00000012501) Slitrk2 (ENSDORG00000000545) ENSDORG00000005920 Slitrk4 (ENSDORG00000001489) #9 ENSDORG00000026987 Ldoc1 (ENSDORG00000011028) Sox3 (ENSDORG00000027035) #11 ENSDORG00000027706 ENSDORG00000027206 ENSDORG00000026314 Atp11c (ENSDORG00000003661) #18 Mcf2 (ENSDORG00000006306) #19 F9 (ENSDORG00000003933) #20 Fgf13 (ENSDORG00000023968) #22 Zic3 (ENSDORG00000025481) #24 Gpr101 (ENSDORG00000011583) Myomorpha ANCESTRAL SPECIES 6 ENSGT00390000012182 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Lesser Egyptian jerboa MODERN SPECIES 53 Pomt1 (ENSJJAG00000019337) ENSJJAG00000009295 Plpp7 (ENSJJAG00000023043) Fam78a (ENSJJAG00000010847) ENSJJAG00000011735 ENSJJAG00000022526 Slitrk4 (ENSJJAG00000014216) #9 Ldoc1 (ENSJJAG00000010596) Sox3 (ENSJJAG00000012521) #11 ENSJJAG00000000576 Atp11c (ENSJJAG00000005439) #18 Mcf2 (ENSJJAG00000018143) #19 F9 (ENSJJAG00000023266) #20 ENSJJAG00000010816 ENSJJAG00000018813 Fgf13 (ENSJJAG00000016169) #22 Magea13 (ENSJJAG00000010090) #23 ENSJJAG00000010694 ENSJJAG00000020542 Zic3 (ENSJJAG00000022714) #24 Gpr101 (ENSJJAG00000022761) ENSJJAG00000013266 Rbmx (ENSJJAG00000023855) ##26 ENSJJAG00000011211 ENSJJAG00000010302 #27 Cd40lg (ENSJJAG00000022579) #28 ENSJJAG00000014597 #30 Brs3 (ENSJJAG00000017913) #31 Adgrg4 (ENSJJAG00000009866) Fhl1 (ENSJJAG00000022369) #33 Slc9a6 (ENSJJAG00000014615) #34 Muroidea ANCESTRAL SPECIES 13 ENSGT00390000012182 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00700000106222 ENSGT00940000162721 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Upper Galilee mountains blind mole rat MODERN SPECIES 1779 Slitrk4 (ENSNGAG00000003850) #9 Ldoc1 (ENSNGAG00000001475) Atp11c (ENSNGAG00000000607) #18 Mcf2 (ENSNGAG00000014425) #19 F9 (ENSNGAG00000013959) #20 Fgf13 (ENSNGAG00000012709) #22 Zic3 (ENSNGAG00000023346) #24 Muroidea_A ANCESTRAL SPECIES 7 ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00860000136220 ENSGT00410000025802.g.b.q.b ENSGT00940000160971 #9 ENSGT00940000154972.eb.b.a.a ENSGT00700000106222 ENSGT00940000154972.fb ENSGT00940000162721 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Murinae ANCESTRAL SPECIES 14 ENSGT00940000161248 ENSGT00860000136220 ENSGT00410000025802.g.b.q.b ENSGT00940000160971 #9 ENSGT00940000154972.eb.b.a.a ENSGT00700000106222 ENSGT00520000060073 ENSGT00940000154972.fb ENSGT00940000162721 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Mus ANCESTRAL SPECIES 9 ENSGT00940000161248 ENSGT00860000136220 ENSGT00410000025802.g.b.q.b ENSGT00940000160971 #9 ENSGT00940000154972.eb.b.a.a ENSGT00700000106222 ENSGT00520000060073 ENSGT00940000154972.fb ENSGT00940000162721 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Mus_A ANCESTRAL SPECIES 15 ENSGT00940000161248 ENSGT00860000136220 ENSGT00410000025802.g.b.q.b ENSGT00940000160971 #9 ENSGT00940000154972.eb.b.a.a ENSGT00700000106222 ENSGT00520000060073 ENSGT00940000154972.fb ENSGT00940000162721 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Ryukyu mouse MODERN SPECIES 19 Slitrk2 (MGP_CAROLIEiJ_G0033119) 4930447F04Rik (MGP_CAROLIEiJ_G0033118) Ctag2 (MGP_CAROLIEiJ_G0033117) Slitrk4 (MGP_CAROLIEiJ_G0033116) #9 Magea9 (MGP_CAROLIEiJ_G0033115) Gm6760 (MGP_CAROLIEiJ_G0033114) MGP_CAROLIEiJ_G0033113 Magec2 (MGP_CAROLIEiJ_G0033112) Ldoc1 (MGP_CAROLIEiJ_G0033111) MGP_CAROLIEiJ_G0033110 Sox3 (MGP_CAROLIEiJ_G0033109) #11 Gm7073 (MGP_CAROLIEiJ_G0033108) #15 Atp11c (MGP_CAROLIEiJ_G0033107) #18 Mcf2 (MGP_CAROLIEiJ_G0033106) #19 F9 (MGP_CAROLIEiJ_G0033105) #20 Fgf13 (MGP_CAROLIEiJ_G0033104) #22 Magea13 (MGP_CAROLIEiJ_G0033103) #23 MGP_CAROLIEiJ_G0033102 Zic3 (MGP_CAROLIEiJ_G0033101) #24 Gpr101 (MGP_CAROLIEiJ_G0033100) Tm9sf5 (MGP_CAROLIEiJ_G0033099) #25 Rbmx (MGP_CAROLIEiJ_G0033098) ##26 Arhgef6 (MGP_CAROLIEiJ_G0033097) #27 Cd40lg (MGP_CAROLIEiJ_G0033096) #28 MGP_CAROLIEiJ_G0033095 #29 Htatsf1 (MGP_CAROLIEiJ_G0033094) #30 Brs3 (MGP_CAROLIEiJ_G0033093) #31 Adgrg4 (MGP_CAROLIEiJ_G0033092) Map7d3 (MGP_CAROLIEiJ_G0033091) #32 Fhl1 (MGP_CAROLIEiJ_G0033090) #33 Slc9a6 (MGP_CAROLIEiJ_G0033089) #34 Mus_B ANCESTRAL SPECIES 14 ENSGT00940000161248 ENSGT00860000136220 ENSGT00410000025802.g.b.q.b ENSGT00940000160971 #9 ENSGT00940000154972.eb.b.a.a ENSGT00700000106222 ENSGT00520000060073 ENSGT00940000154972.fb ENSGT00940000162721 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Mouse MODERN SPECIES 37 Gm1140 (ENSMUSG00000079578) Slitrk2 (ENSMUSG00000036790) 4930447F04Rik (ENSMUSG00000031182) Ctag2 (ENSMUSG00000031181) Slitrk4 (ENSMUSG00000046699) #9 Magea9 (ENSMUSG00000031179) Gm6760 (ENSMUSG00000079579) Magec2 (ENSMUSG00000045330) Ldoc1 (ENSMUSG00000057615) Sox3 (ENSMUSG00000045179) #11 Gm715 (ENSMUSG00000082226) #12 Gm7073 (ENSMUSG00000079583) #15 Atp11c (ENSMUSG00000062949) #18 Mcf2 (ENSMUSG00000031139) #19 F9 (ENSMUSG00000031138) #20 Fgf13 (ENSMUSG00000031137) #22 Magea13 (ENSMUSG00000046180) #23 Zic3 (ENSMUSG00000067860) #24 Gpr101 (ENSMUSG00000036357) Tm9sf5 (ENSMUSG00000079584) #25 Rbmx (ENSMUSG00000031134) ##26 Arhgef6 (ENSMUSG00000031133) #27 Cd40lg (ENSMUSG00000031132) #28 Vgll1 (ENSMUSG00000031131) #29 Htatsf1 (ENSMUSG00000067873) #30 Brs3 (ENSMUSG00000031130) #31 Adgrg4 (ENSMUSG00000053852) Map7d3 (ENSMUSG00000067878) #32 Fhl1 (ENSMUSG00000023092) #33 Slc9a6 (ENSMUSG00000060681) #34 Mmgt1 (ENSMUSG00000061273) #35 Mus_C ANCESTRAL SPECIES 27 ENSGT00390000000062.x.b.l.a ENSGT00940000161248 ENSGT00860000136220 ENSGT00410000025802.g.b.q.b ENSGT00940000160971 #9 ENSGT00940000154972.eb.b.a.a ENSGT00700000106222 ENSGT00520000060073 ENSGT00940000154972.fb ENSGT00940000162721 ENSGT00940000162359 #11 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 spretus MODERN SPECIES 19 MGP_SPRETEiJ_G0034273 Slitrk2 (MGP_SPRETEiJ_G0034272) 4930447F04Rik (MGP_SPRETEiJ_G0034271) Ctag2 (MGP_SPRETEiJ_G0034270) Slitrk4 (MGP_SPRETEiJ_G0034269) #9 Magea9 (MGP_SPRETEiJ_G0034268) Gm6760 (MGP_SPRETEiJ_G0034267) MGP_SPRETEiJ_G0034266 Magec2 (MGP_SPRETEiJ_G0034265) Ldoc1 (MGP_SPRETEiJ_G0034264) Sox3 (MGP_SPRETEiJ_G0034263) #11 Gm7073 (MGP_SPRETEiJ_G0034262) #15 Atp11c (MGP_SPRETEiJ_G0034261) #18 Mcf2 (MGP_SPRETEiJ_G0034260) #19 F9 (MGP_SPRETEiJ_G0034259) #20 Fgf13 (MGP_SPRETEiJ_G0034258) #22 Magea13 (MGP_SPRETEiJ_G0034257) #23 Zic3 (MGP_SPRETEiJ_G0034256) #24 Gpr101 (MGP_SPRETEiJ_G0034255) Tm9sf5 (MGP_SPRETEiJ_G0034254) #25 Rbmx (MGP_SPRETEiJ_G0034253) ##26 Arhgef6 (MGP_SPRETEiJ_G0034252) #27 Cd40lg (MGP_SPRETEiJ_G0034251) #28 Vgll1 (MGP_SPRETEiJ_G0034250) #29 Htatsf1 (MGP_SPRETEiJ_G0034249) #30 Brs3 (MGP_SPRETEiJ_G0034248) #31 Adgrg4 (MGP_SPRETEiJ_G0034247) Map7d3 (MGP_SPRETEiJ_G0034246) #32 Fhl1 (MGP_SPRETEiJ_G0034245) #33 Slc9a6 (MGP_SPRETEiJ_G0034244) #34 Mmgt1 (MGP_SPRETEiJ_G0034243) #35 Steppe mouse MODERN SPECIES 2356 Fgf13 (ENSMSIG00000013334) #22 Shrew mouse MODERN SPECIES 23 MGP_PahariEiJ_G0031661 Slitrk2 (MGP_PahariEiJ_G0031660) 4930447F04Rik (MGP_PahariEiJ_G0031659) Ctag2 (MGP_PahariEiJ_G0031658) Slitrk4 (MGP_PahariEiJ_G0031657) #9 Magea9 (MGP_PahariEiJ_G0031656) Gm6760 (MGP_PahariEiJ_G0031655) MGP_PahariEiJ_G0031654 Magec2 (MGP_PahariEiJ_G0031653) Ldoc1 (MGP_PahariEiJ_G0031652) Sox3 (MGP_PahariEiJ_G0031651) #11 Gm7073 (MGP_PahariEiJ_G0031650) #15 Atp11c (MGP_PahariEiJ_G0031649) #18 MGP_PahariEiJ_G0031648 #19 F9 (MGP_PahariEiJ_G0031647) #20 Fgf13 (MGP_PahariEiJ_G0031646) #22 Magea13 (MGP_PahariEiJ_G0031645) #23 Zic3 (MGP_PahariEiJ_G0031644) #24 Gpr101 (MGP_PahariEiJ_G0031643) MGP_PahariEiJ_G0031642 #25 Rbmx (MGP_PahariEiJ_G0031641) ##26 Arhgef6 (MGP_PahariEiJ_G0031640) #27 Cd40lg (MGP_PahariEiJ_G0031639) #28 Zfx (MGP_PahariEiJ_G0031638) Vgll1 (MGP_PahariEiJ_G0031637) #29 MGP_PahariEiJ_G0031636 #30 Brs3 (MGP_PahariEiJ_G0031635) #31 Adgrg4 (MGP_PahariEiJ_G0031634) Map7d3 (MGP_PahariEiJ_G0031633) #32 Fhl1 (MGP_PahariEiJ_G0031632) #33 Slc9a6 (MGP_PahariEiJ_G0031631) #34 Cricetidae ANCESTRAL SPECIES 8 ENSGT00390000000062.x.b.l.a ENSGT00940000161248 ENSGT00860000136220 ENSGT00410000025802.g.b.q.b ENSGT00940000160971 #9 ENSGT00940000154972.eb.b.a.a ENSGT00700000106222 ENSGT00940000154972.fb ENSGT00940000162721 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000183733 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 Cricetidae_B ANCESTRAL SPECIES 28 ENSGT00940000161248 ENSGT00860000136220 ENSGT00410000025802.g.b.q.b ENSGT00940000160971 #9 ENSGT00940000154972.eb.b.a.a ENSGT00700000106222 ENSGT00940000154972.fb ENSGT00700000106038.A ENSGT00940000162721 ENSGT00940000164798 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000183733 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 Prairie vole MODERN SPECIES 360 Ctag2 (ENSMOCG00000017014) ENSMOCG00000014952 Slitrk4 (ENSMOCG00000008180) #9 ENSMOCG00000017215 Magec2 (ENSMOCG00000016294) ENSMOCG00000006967 Ldoc1 (ENSMOCG00000008324) ENSMOCG00000013955 Sox3 (ENSMOCG00000009062) #11 Gm7073 (ENSMOCG00000018667) #15 ENSMOCG00000012975 Atp11c (ENSMOCG00000002605) #18 ENSMOCG00000007642 Mcf2 (ENSMOCG00000007145) #19 F9 (ENSMOCG00000010515) #20 Fgf13 (ENSMOCG00000000865) #22 Magea13 (ENSMOCG00000006923) #23 ENSMOCG00000002300 Zic3 (ENSMOCG00000020544) #24 Gpr101 (ENSMOCG00000019682) Rbmx (ENSMOCG00000018048) ##26 ENSMOCG00000012399 #27 Cd40lg (ENSMOCG00000007638) #28 ENSMOCG00000021293 ENSMOCG00000023007 #30 Brs3 (ENSMOCG00000021756) #31 ENSMOCG00000020722 ENSMOCG00000013515 Map7d3 (ENSMOCG00000010703) #32 Fhl1 (ENSMOCG00000019051) #33 Slc9a6 (ENSMOCG00000017739) #34 Northern American deer mouse MODERN SPECIES 475 Magea9 (ENSPEMG00000024116) Gm6760 (ENSPEMG00000013903) ENSPEMG00000024166 ENSPEMG00000021044 Magec2 (ENSPEMG00000020864) ENSPEMG00000026579 ENSPEMG00000031332 ENSPEMG00000024934 ENSPEMG00000023481 ENSPEMG00000029307 Sox3 (ENSPEMG00000023890) #11 Gm715 (ENSPEMG00000025763) #12 Atp11c (ENSPEMG00000023535) #18 Mcf2 (ENSPEMG00000001372) #19 F9 (ENSPEMG00000010184) #20 Fgf13 (ENSPEMG00000015509) #22 Magea13 (ENSPEMG00000023742) #23 Zic3 (ENSPEMG00000022168) #24 Gpr101 (ENSPEMG00000025689) Tm9sf5 (ENSPEMG00000022942) #25 Rbmx (ENSPEMG00000029371) ##26 Arhgef6 (ENSPEMG00000021523) #27 Cd40lg (ENSPEMG00000023170) #28 Vgll1 (ENSPEMG00000022343) #29 Htatsf1 (ENSPEMG00000022397) #30 Brs3 (ENSPEMG00000022868) #31 ENSPEMG00000022946 Map7d3 (ENSPEMG00000021400) #32 Fhl1 (ENSPEMG00000022628) #33 Slc9a6 (ENSPEMG00000023480) #34 Mmgt1 (ENSPEMG00000029255) #35 Cricetinae ANCESTRAL SPECIES 29 ENSGT00950000183189.a.b.b ENSGT00390000000062.x.b.l.a ENSGT00940000161248 ENSGT00860000136220 ENSGT00410000025802.g.b.q.b ENSGT00940000160971 #9 ENSGT00940000154972.eb.b.a.a ENSGT00700000106222 ENSGT00940000154972.fb ENSGT00940000162721 ENSGT00940000162359 #11 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000183733 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.a.a.b.j ##36 Chinese hamster chok1gshd MODERN SPECIES 16 ENSCGRG00001016997 Slitrk2 (ENSCGRG00001010877) 4930447F04Rik (ENSCGRG00001021811) Ctag2 (ENSCGRG00001024950) Slitrk4 (ENSCGRG00001005530) #9 Magea9 (ENSCGRG00001005254) Gm6760 (ENSCGRG00001016891) Magec2 (ENSCGRG00001021825) Ldoc1 (ENSCGRG00001009400) Sox3 (ENSCGRG00001011737) #11 Gm7073 (ENSCGRG00001022592) #15 Atp11c (ENSCGRG00001020356) #18 Mcf2 (ENSCGRG00001021302) #19 F9 (ENSCGRG00001015312) #20 ENSCGRG00001017965 Fgf13 (ENSCGRG00001014336) #22 Magea13 (ENSCGRG00001010626) #23 ENSCGRG00001018083 Zic3 (ENSCGRG00001024527) #24 Gpr101 (ENSCGRG00001012303) Tm9sf5 (ENSCGRG00001002099) #25 Rbmx (ENSCGRG00001015786) ##26 Arhgef6 (ENSCGRG00001012788) #27 Cd40lg (ENSCGRG00001020263) #28 Vgll1 (ENSCGRG00001001771) #29 Htatsf1 (ENSCGRG00001021602) #30 Brs3 (ENSCGRG00001000147) #31 ENSCGRG00001000280 ENSCGRG00001022999 Fhl1 (ENSCGRG00001018833) #33 Slc9a6 (ENSCGRG00001008142) #34 Golden Hamster MODERN SPECIES 788 Fgf13 (ENSMAUG00000008666) #22 Magea13 (ENSMAUG00000019340) #23 Zic3 (ENSMAUG00000009402) #24 Gpr101 (ENSMAUG00000000743) Tm9sf5 (ENSMAUG00000018307) #25 Rbmx (ENSMAUG00000019654) ##26 ENSMAUG00000008083 #27 Cd40lg (ENSMAUG00000019910) #28 Vgll1 (ENSMAUG00000019769) #29 Htatsf1 (ENSMAUG00000007235) #30 Brs3 (ENSMAUG00000019309) #31 ENSMAUG00000011586 ENSMAUG00000000915 Map7d3 (ENSMAUG00000000471) #32 Fhl1 (ENSMAUG00000014161) #33 ENSMAUG00000019556 Rodentia_A ANCESTRAL SPECIES 9 ENSGT00390000012182 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864.c #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.a.a.b ##36 Hystricomorpha ANCESTRAL SPECIES 57 ENSGT00940000162864.d #23 ENSGT00940000154972 ENSGT00940000162721 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864.c #23 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000153425.a.a.b.a #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104.gb.a #35 Hystricomorpha_a ANCESTRAL SPECIES 80 ENSGT00940000162721 ENSGT00940000162359 #11 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000153425.a.a.b.a #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104.gb.a #35 ENSGT00390000016655.a.a.a.b ##36 Hystricomorpha_b ANCESTRAL SPECIES 115 ENSGT00940000162359 #11 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000153425.a.a.b.a #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104.gb.a #35 ENSGT00390000016655.a.a.a.b ##36 ENSGT00390000016655.a.b #36 Long-tailed chinchilla MODERN SPECIES 196 ENSCLAG00000017550 UTP25 (ENSCLAG00000004405) IRF6 (ENSCLAG00000003528) C1orf74 (ENSCLAG00000004768) TRAF3IP3 (ENSCLAG00000004809) HSD11B1 (ENSCLAG00000001865) ENSCLAG00000017530 LAMB3 (ENSCLAG00000002447) CAMK1G (ENSCLAG00000002854) PLXNA2 (ENSCLAG00000002998) SOX3 (ENSCLAG00000003169) #11 ENSCLAG00000003218 #15 ATP11C (ENSCLAG00000005103) #18 MCF2 (ENSCLAG00000005765) #19 F9 (ENSCLAG00000006998) #20 FGF13 (ENSCLAG00000001764) #22 ZIC3 (ENSCLAG00000001934) #24 GPR101 (ENSCLAG00000002046) RBMXL1 (ENSCLAG00000002258) #26 ARHGEF6 (ENSCLAG00000014229) #27 CD40LG (ENSCLAG00000002527) #28 VGLL1 (ENSCLAG00000002551) #29 HTATSF1 (ENSCLAG00000002718) #30 BRS3 (ENSCLAG00000003190) #31 ADGRG4 (ENSCLAG00000003090) FHL1 (ENSCLAG00000002512) #33 SLC9A6 (ENSCLAG00000003196) #34 MMGT1 (ENSCLAG00000002109) #35 ENSCLAG00000002154 ##36 INTS6L (ENSCLAG00000002286) #36 Degu MODERN SPECIES 151 DECR1 (ENSODEG00000003173) CALB1 (ENSODEG00000003248) KCNMB3 (ENSODEG00000003258) PIK3CA (ENSODEG00000003287) ZMAT3 (ENSODEG00000003313) KCNMB2 (ENSODEG00000003349) TBL1XR1 (ENSODEG00000003370) ENSODEG00000003408 ENSODEG00000003420 SOX3 (ENSODEG00000003426) #11 ENSODEG00000003432 ENSODEG00000003458 ATP11C (ENSODEG00000003493) #18 MCF2 (ENSODEG00000003577) #19 F9 (ENSODEG00000003689) #20 FGF13 (ENSODEG00000003799) #22 ENSODEG00000003824 ENSODEG00000003847 ENSODEG00000003878 ENSODEG00000005517 ENSODEG00000019174 ENSODEG00000019167 ENSODEG00000005534 ZIC3 (ENSODEG00000005556) #24 ENSODEG00000005580 ##26 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000038876 #9 ENSHGLG00000049672 ENSHGLG00000036529 ENSHGLG00000037583 ENSHGLG00000004407 ENSHGLG00000039059 SOX3 (ENSHGLG00000039208) #11 ENSHGLG00000047068 #12 ATP11C (ENSHGLG00000007759) #18 ENSHGLG00000009095 MCF2 (ENSHGLG00000013161) #19 F9 (ENSHGLG00000050058) #20 ENSHGLG00000034867 ENSHGLG00000034873 ENSHGLG00000033865 ENSHGLG00000007629 #22 ENSHGLG00000040882 #23 ENSHGLG00000046515 ENSHGLG00000010972 ENSHGLG00000041497 #24 ENSHGLG00000033794 GPR101 (ENSHGLG00000044397) ENSHGLG00000011055 #26 ARHGEF6 (ENSHGLG00000004195) #27 ENSHGLG00000045770 CD40LG (ENSHGLG00000046347) #28 VGLL1 (ENSHGLG00000037465) #29 HTATSF1 (ENSHGLG00000005328) #30 BRS3 (ENSHGLG00000018193) #31 ADGRG4 (ENSHGLG00000018882) ENSHGLG00000007640 #32 Naked mole-rat female MODERN SPECIES 2 DCT (ENSHGLG00000001562) TGDS (ENSHGLG00000000360) GPR180 (ENSHGLG00000002152) ENSHGLG00000034930 ENSHGLG00000006878 ENSHGLG00000008312 ENSHGLG00000048406 ENSHGLG00000011718 ENSHGLG00000042681 CLDN10 (ENSHGLG00000001257) DZIP1 (ENSHGLG00000002976) DNAJC3 (ENSHGLG00000003951) UGGT2 (ENSHGLG00000001100) HS6ST3 (ENSHGLG00000003455) ENSHGLG00000047293 ENSHGLG00000034517 #22 OXGR1 (ENSHGLG00000000211) ENSHGLG00000035007 MBNL2 (ENSHGLG00000000575) ENSHGLG00000045309 ENSHGLG00000001769 ENSHGLG00000002267 ENSHGLG00000050845 ENSHGLG00000020479 SLC15A1 (ENSHGLG00000019478) ENSHGLG00000019500 ENSHGLG00000043020 ENSHGLG00000019518 ENSHGLG00000019531 ENSHGLG00000002656 ENSHGLG00000045833 Sciuridae ANCESTRAL SPECIES 27 ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162721 ENSGT00940000164798 ENSGT00940000162359 #11 ENSGT00390000002886.b.b #12 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864.c #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.a.a.b ##36 Marmotini ANCESTRAL SPECIES 72 ENSGT00940000154972.gb.b.a ENSGT00940000154972.gb.a ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00390000007953 ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00960000192900 ENSGT00940000160971 #9 ENSGT00700000106222 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864.c #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.a.a.b ##36 Alpin marmot MODERN SPECIES 50 IDS (ENSMMMG00000012466) AFF2 (ENSMMMG00000012476) ENSMMMG00000012501 FMR1 (ENSMMMG00000012509) ENSMMMG00000012529 ENSMMMG00000012535 ENSMMMG00000012541 SLITRK2 (ENSMMMG00000012547) ENSMMMG00000012552 SLITRK4 (ENSMMMG00000012562) #9 LDOC1 (ENSMMMG00000012582) ENSMMMG00000012587 #15 ATP11C (ENSMMMG00000012599) #18 ENSMMMG00000012728 #19 F9 (ENSMMMG00000012745) #20 FGF13 (ENSMMMG00000012768) #22 ENSMMMG00000012790 #23 ZIC3 (ENSMMMG00000012845) #24 GPR101 (ENSMMMG00000012861) RBMX (ENSMMMG00000012892) ##26 ARHGEF6 (ENSMMMG00000012910) #27 CD40LG (ENSMMMG00000012969) #28 VGLL1 (ENSMMMG00000013009) #29 HTATSF1 (ENSMMMG00000013019) #30 BRS3 (ENSMMMG00000013039) #31 ADGRG4 (ENSMMMG00000013042) ENSMMMG00000013066 #32 FHL1 (ENSMMMG00000013081) #33 SLC9A6 (ENSMMMG00000013232) #34 MMGT1 (ENSMMMG00000013293) #35 ENSMMMG00000013303 ##36 Marmotini_b ANCESTRAL SPECIES 104 ENSGT00940000154972.gb.a ENSGT00940000158388 ENSGT00940000154972.gb.b.a ENSGT00940000161825 ENSGT00390000012182 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00960000192900 ENSGT00940000160971 #9 ENSGT00700000106222 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000162864.c #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.a.a.b ##36 Squirrel MODERN SPECIES 113 IDS (ENSSTOG00000011740) AFF2 (ENSSTOG00000004799) FMR1 (ENSSTOG00000003260) SLITRK2 (ENSSTOG00000003070) ENSSTOG00000025269 SLITRK4 (ENSSTOG00000027854) #9 LDOC1 (ENSSTOG00000019751) ATP11C (ENSSTOG00000010827) #18 MCF2 (ENSSTOG00000029050) #19 F9 (ENSSTOG00000010803) #20 FGF13 (ENSSTOG00000013920) #22 ZIC3 (ENSSTOG00000024153) #24 GPR101 (ENSSTOG00000002026) RBMX (ENSSTOG00000006211) ##26 ARHGEF6 (ENSSTOG00000006178) #27 ENSSTOG00000033794 CD40LG (ENSSTOG00000006163) #28 VGLL1 (ENSSTOG00000012521) #29 HTATSF1 (ENSSTOG00000012505) #30 BRS3 (ENSSTOG00000012492) #31 ADGRG4 (ENSSTOG00000023630) ENSSTOG00000008415 #32 FHL1 (ENSSTOG00000025661) #33 SLC9A6 (ENSSTOG00000025666) #34 MMGT1 (ENSSTOG00000004796) #35 INTS6L (ENSSTOG00000027054) #36 Arctic ground squirrel MODERN SPECIES 98 LDOC1 (ENSUPAG00010012210) ENSUPAG00010012213 SOX3 (ENSUPAG00010012217) #11 ENSUPAG00010012219 #12 ENSUPAG00010012223 ENSUPAG00010012229 #15 ENSUPAG00010012237 ATP11C (ENSUPAG00010012257) #18 MCF2 (ENSUPAG00010012743) #19 F9 (ENSUPAG00010012874) #20 FGF13 (ENSUPAG00010012898) #22 ENSUPAG00010012907 #23 ENSUPAG00010012922 ZIC3 (ENSUPAG00010012933) #24 GPR101 (ENSUPAG00010012948) RBMXL1 (ENSUPAG00010012952) #26 ARHGEF6 (ENSUPAG00010012992) #27 ENSUPAG00010013170 CD40LG (ENSUPAG00010013175) #28 VGLL1 (ENSUPAG00010013182) #29 HTATSF1 (ENSUPAG00010013190) #30 BRS3 (ENSUPAG00010013205) #31 ADGRG4 (ENSUPAG00010013206) ENSUPAG00010013231 #32 FHL1 (ENSUPAG00010013250) #33 SLC9A6 (ENSUPAG00010013369) #34 Atlantogenata ANCESTRAL SPECIES 87 ENSGT00940000162359 #11 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000166884 ENSGT00940000160971 #9 ENSGT00940000162313 #22 ENSGT00940000162864 #23 ENSGT00940000160788 #24 ENSGT00940000161248 ENSGT00940000162539 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Xenarthra ANCESTRAL SPECIES ENSGT00940000162313 #22 Armadillo MODERN SPECIES 4528 FGF13 (ENSDNOG00000044091) #22 ENSDNOG00000039524 #23 ENSDNOG00000049250 #23 Sloth MODERN SPECIES 2341 FGF13 (ENSCHOG00000004376) #22 Afrotheria ANCESTRAL SPECIES 104 ENSGT00940000162359 #11 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000166884 ENSGT00940000162313 #22 ENSGT00940000162864.f #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.a.a ##36 ENSGT00390000016655.a.b #36 Afrotheria_a ANCESTRAL SPECIES 104 ENSGT00940000162359 #11 ENSGT00390000004226 #15 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000166884 ENSGT00940000162313 #22 ENSGT00940000162864.f #23 ENSGT00940000160788 #24 ENSGT00940000162539 ENSGT00940000153425.a.a.b.b ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000162744 ENSGT00940000171852 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.a.a ##36 Elephant MODERN SPECIES 597 ENSLAFG00000029309 ENSLAFG00000031501 SOX3 (ENSLAFG00000030155) #11 ENSLAFG00000032766 #15 ATP11C (ENSLAFG00000007057) #18 MCF2 (ENSLAFG00000016947) #19 F9 (ENSLAFG00000005897) #20 ENSLAFG00000025714 FGF13 (ENSLAFG00000003454) #22 ENSLAFG00000021898 #23 ENSLAFG00000026822 ZIC3 (ENSLAFG00000007048) #24 GPR101 (ENSLAFG00000026609) ENSLAFG00000005568 ##26 ARHGEF6 (ENSLAFG00000005561) #27 CD40LG (ENSLAFG00000005559) #28 VGLL1 (ENSLAFG00000014300) #29 HTATSF1 (ENSLAFG00000014307) #30 BRS3 (ENSLAFG00000026825) #31 ADGRG4 (ENSLAFG00000021418) ENSLAFG00000006921 FHL1 (ENSLAFG00000026557) #33 SLC9A6 (ENSLAFG00000000085) #34 MMGT1 (ENSLAFG00000004024) #35 Tenrec MODERN SPECIES 7472 FGF13 (ENSETEG00000019785) #22 ENSETEG00000019781 #23 Marsupialia ANCESTRAL SPECIES 30 ENSGT00940000161248 ENSGT00390000005826.b.k ENSGT00940000153886.a.b.c ENSGT00940000160971 #9 ENSGT00390000007230.h ENSGT00940000162359 #11 ENSGT00390000006758.b.b ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000163347 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000165216 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.b.a.a ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902.g #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000167502 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104.g #35 Marsupialia_b ANCESTRAL SPECIES 29 ENSGT00940000161248 ENSGT00390000005826.b.k ENSGT00940000153886.a.b.c ENSGT00940000160971 #9 ENSGT00390000007230.h ENSGT00940000162359 #11 ENSGT00390000006758.b.b ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000163347 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000165216 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.b.a.a ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902.g #30 ENSGT01100000263512.b.b.b #31 ENSGT00390000010165.i.b.b.a ##21 ENSGT00940000167502 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 Diprotodontia ANCESTRAL SPECIES 95 ENSGT00940000162359 #11 ENSGT00390000006758.b.b ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000165216 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.b.a.a ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902.g #30 ENSGT01100000263512.b.b.b #31 ENSGT00390000010165.i.b.b.a ##21 Diprotodontia_a ANCESTRAL SPECIES 88 ENSGT00940000162359 #11 ENSGT00390000006758.b.b ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000153348.A.b ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000165216 ENSGT00940000162539 ENSGT00940000163390 #25 ENSGT00940000153425.b.a.a ##26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902.g #30 ENSGT01100000263512.b.b.b #31 ENSGT00390000010165.i.b.b.a ##21 Common wonbat MODERN SPECIES 1185 SOX3 (ENSVURG00010016214) #11 ENSVURG00010016222 ATP11C (ENSVURG00010016232) #18 ENSVURG00010016290 #19 F9 (ENSVURG00010016338) #20 ENSVURG00010016365 FGF13 (ENSVURG00010016376) #22 ZIC3 (ENSVURG00010016409) #24 ENSVURG00010016416 ENSVURG00010016424 #25 ENSVURG00010016435 ##26 ARHGEF6 (ENSVURG00010016466) #27 CD40LG (ENSVURG00010016563) #28 ENSVURG00010016567 #30 BRS3 (ENSVURG00010016575) #31 ENSVURG00010016580 ##21 koala MODERN SPECIES 219 ENSPCIG00000017205 ENSPCIG00000015908 SOX3 (ENSPCIG00000030420) #11 ENSPCIG00000030419 ATP11C (ENSPCIG00000030416) #18 MCF2 (ENSPCIG00000001535) #19 F9 (ENSPCIG00000001572) #20 ENSPCIG00000006274 FGF13 (ENSPCIG00000006275) #22 ZIC3 (ENSPCIG00000034935) #24 ENSPCIG00000007900 ENSPCIG00000029722 ENSPCIG00000029719 #25 ENSPCIG00000029716 ##26 ARHGEF6 (ENSPCIG00000029715) #27 CD40LG (ENSPCIG00000033804) #28 ENSPCIG00000018898 #29 ENSPCIG00000018896 #30 BRS3 (ENSPCIG00000018894) #31 ENSPCIG00000037054 ##21 Sauria ANCESTRAL SPECIES 21 ENSGT00940000153669.b ENSGT00940000157029 ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000157452 ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT01100000263502.A.a.a.a.a ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000167502 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Archelosauria ANCESTRAL SPECIES 24 ENSGT00940000153669.b ENSGT00940000157029 ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000157452 ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT01100000263502.A.a.a.a.a ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000167502 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Archosauria ANCESTRAL SPECIES 15 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000167502 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 Aves ANCESTRAL SPECIES 23 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000167502 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 Neognathae ANCESTRAL SPECIES 22 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000167502 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 Neognathae_b ANCESTRAL SPECIES ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 Passeriformes ANCESTRAL SPECIES 24 ENSGT00940000157822 ENSGT00940000178841 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 Passeriformes_d ANCESTRAL SPECIES 27 ENSGT00940000159818 ENSGT00940000158335 ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 Passeriformes_g ANCESTRAL SPECIES 28 ENSGT00940000159818 ENSGT00940000158335 ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902.f #30 ENSGT01100000263512.b.b.b #31 Medium ground finch MODERN SPECIES 52 KLHL4 (ENSGFOG00000012871) ENSGFOG00000012864 DIAPH2 (ENSGFOG00000012503) ENSGFOG00000012475 ENSGFOG00000012471 PCDH19 (ENSGFOG00000012468) TNMD (ENSGFOG00000012465) TSPAN6 (ENSGFOG00000012462) SYTL4 (ENSGFOG00000012452) CSTF2 (ENSGFOG00000012429) NOX1 (ENSGFOG00000012400) ENSGFOG00000012393 ATP11C (ENSGFOG00000012311) #18 MCF2 (ENSGFOG00000012080) #19 F9 (ENSGFOG00000012055) #20 FGF13 (ENSGFOG00000012050) #22 ENSGFOG00000012045 #25 ENSGFOG00000012039 #26 ARHGEF6 (ENSGFOG00000011954) #27 CD40LG (ENSGFOG00000011947) #28 ENSGFOG00000011943 #29 HTATSF1 (ENSGFOG00000011937) #30 BRS3 (ENSGFOG00000011932) #31 Great tit MODERN SPECIES 24 PCDH19 (ENSPMJG00000000871) ENSPMJG00000000855 TNMD (ENSPMJG00000000852) TSPAN6 (ENSPMJG00000000848) SRPX2 (ENSPMJG00000000844) SYTL4 (ENSPMJG00000000830) TRMT12 (ENSPMJG00000000822) CSTF2 (ENSPMJG00000000799) NOX1 (ENSPMJG00000000771) ENSPMJG00000000764 ENSPMJG00000000754 ATP11C (ENSPMJG00000000673) #18 MCF2 (ENSPMJG00000000593) #19 F9 (ENSPMJG00000000579) #20 ENSPMJG00000000543 FGF13 (ENSPMJG00000000515) #22 ZIC3 (ENSPMJG00000000472) #24 ENSPMJG00000000398 #25 ENSPMJG00000000340 #26 ARHGEF6 (ENSPMJG00000000272) #27 CD40LG (ENSPMJG00000000266) #28 VGLL1 (ENSPMJG00000000256) #29 HTATSF1 (ENSPMJG00000000240) #30 ENSPMJG00000000207 ENSPMJG00000000196 Neognathae_c ANCESTRAL SPECIES 29 ENSGT00940000157822 ENSGT00940000159162 ENSGT00940000178841 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 Golden eagle MODERN SPECIES 13 DIAPH2 (ENSACCG00020016390) PCDH19 (ENSACCG00020016501) ENSACCG00020016502 TNMD (ENSACCG00020016505) TSPAN6 (ENSACCG00020016508) ENSACCG00020016511 SRPX2 (ENSACCG00020016523) SYTL4 (ENSACCG00020016540) TRMT12 (ENSACCG00020016542) CSTF2 (ENSACCG00020016547) NOX1 (ENSACCG00020016552) ENSACCG00020016553 ATP11C (ENSACCG00020016561) #18 MCF2 (ENSACCG00020016574) #19 F9 (ENSACCG00020016586) #20 FGF13 (ENSACCG00020016589) #22 ZIC3 (ENSACCG00020016591) #24 ENSACCG00020016593 ENSACCG00020016595 #25 ENSACCG00020016601 #26 ARHGEF6 (ENSACCG00020016606) #27 CD40LG (ENSACCG00020016610) #28 VGLL1 (ENSACCG00020016612) #29 HTATSF1 (ENSACCG00020016615) #30 BRS3 (ENSACCG00020016618) #31 ENSACCG00020016623 #32 FHL1 (ENSACCG00020016633) #33 SLC9A6 (ENSACCG00020016671) #34 MMGT1 (ENSACCG00020016729) #35 INTS6L (ENSACCG00020016733) #36 MOSPD1 (ENSACCG00020016741) Galloanserae ANCESTRAL SPECIES 21 ENSGT00940000157822 ENSGT00940000178841 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000167502 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 Phasianidae ANCESTRAL SPECIES 2 ENSGT00940000157822 ENSGT00940000178841 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000167502 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 Japanese quail MODERN SPECIES 22 KLHL4 (ENSCJPG00005016469) ENSCJPG00005016454 DIAPH2 (ENSCJPG00005016407) PCDH19 (ENSCJPG00005016400) TNMD (ENSCJPG00005016399) TSPAN6 (ENSCJPG00005016398) SRPX2 (ENSCJPG00005016397) SYTL4 (ENSCJPG00005016396) TRMT12 (ENSCJPG00005016395) CSTF2 (ENSCJPG00005016394) NOX1 (ENSCJPG00005016393) ENSCJPG00005016392 ATP11C (ENSCJPG00005016391) #18 MCF2 (ENSCJPG00005016390) #19 F9 (ENSCJPG00005016389) #20 FGF13 (ENSCJPG00005016386) #22 ZIC3 (ENSCJPG00005016381) #24 ENSCJPG00005016378 #25 ENSCJPG00005016376 #26 ARHGEF6 (ENSCJPG00005016375) #27 CD40LG (ENSCJPG00005016374) #28 VGLL1 (ENSCJPG00005016373) #29 HTATSF1 (ENSCJPG00005016372) #30 BRS3 (ENSCJPG00005016371) #31 ENSCJPG00005016370 ENSCJPG00005016369 ENSCJPG00005016368 #32 FHL1 (ENSCJPG00005016338) #33 SLC9A6 (ENSCJPG00005016337) #34 MMGT1 (ENSCJPG00005016334) #35 INTS6L (ENSCJPG00005016333) #36 Phasianidae_b ANCESTRAL SPECIES 24 ENSGT00940000157822 ENSGT00940000178841 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 ENSGT00940000155266 Turkey MODERN SPECIES 29 ENSMGAG00000004445 DIAPH2 (ENSMGAG00000004346) PCDH19 (ENSMGAG00000004330) TNMD (ENSMGAG00000004293) TSPAN6 (ENSMGAG00000004268) SRPX2 (ENSMGAG00000004261) SYTL4 (ENSMGAG00000004197) ENSMGAG00000004174 CSTF2 (ENSMGAG00000004139) NOX1 (ENSMGAG00000004075) ENSMGAG00000004062 ARL13A (ENSMGAG00000004193) ATP11C (ENSMGAG00000003966) #18 MCF2 (ENSMGAG00000003860) #19 F9 (ENSMGAG00000003817) #20 FGF13 (ENSMGAG00000003791) #22 ENSMGAG00000003625 #25 ENSMGAG00000003594 #26 ARHGEF6 (ENSMGAG00000003749) #27 CD40LG (ENSMGAG00000019571) #28 VGLL1 (ENSMGAG00000003609) #29 HTATSF1 (ENSMGAG00000003558) #30 BRS3 (ENSMGAG00000003548) #31 ENSMGAG00000019911 MAP7D3 (ENSMGAG00000003518) #32 FHL1 (ENSMGAG00000003498) #33 SLC9A6 (ENSMGAG00000003437) #34 MMGT1 (ENSMGAG00000021585) #35 INTS6L (ENSMGAG00000003369) #36 MOSPD1 (ENSMGAG00000003340) ENSMGAG00000003324 Chicken MODERN SPECIES 33 DIAPH2 (ENSGALG00010018053) ENSGALG00010015765 PCDH19 (ENSGALG00010015758) TNMD (ENSGALG00010016777) TSPAN6 (ENSGALG00010016772) SRPX2 (ENSGALG00010016757) SYTL4 (ENSGALG00010016750) TRMT12 (ENSGALG00010016742) CSTF2 (ENSGALG00010016704) NOX1 (ENSGALG00010016678) ENSGALG00010016651 ENSGALG00010017548 ATP11C (ENSGALG00010017534) #18 MCF2 (ENSGALG00010017477) #19 F9 (ENSGALG00010017445) #20 FGF13 (ENSGALG00010017434) #22 ZIC3 (ENSGALG00010017413) #24 TM9SF2L (ENSGALG00010015911) #25 RBMXL1 (ENSGALG00010015895) #26 ARHGEF6 (ENSGALG00010015866) #27 CD40LG (ENSGALG00010016205) #28 VGLL1 (ENSGALG00010014555) #29 HTATSF1 (ENSGALG00010019961) #30 BRS3 (ENSGALG00010014519) #31 MAP7D3 (ENSGALG00010015018) #32 FHL1 (ENSGALG00010014929) #33 SLC9A6 (ENSGALG00010014893) #34 MMGT1 (ENSGALG00010014856) #35 INTS6L (ENSGALG00010016260) #36 MOSPD1 (ENSGALG00010016224) PABIR3 (ENSGALG00010015778) Anatidae ANCESTRAL SPECIES 24 ENSGT00940000175287 ENSGT00940000157822 ENSGT00940000159162 ENSGT00480000042679.a ENSGT00940000159092 ENSGT00940000159149 ENSGT00940000159060 ENSGT00940000153304.A ENSGT00940000158987 ENSGT00940000161632 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 Duck MODERN SPECIES 1 ENSAPLG00000006804 DIAPH2 (ENSAPLG00000003882) ENSAPLG00000026226 PCDH19 (ENSAPLG00000003793) ENSAPLG00000028030 SRPX2 (ENSAPLG00000008584) SYTL4 (ENSAPLG00000007671) ENSAPLG00000019209 CSTF2 (ENSAPLG00000007255) ENSAPLG00000006524 ENSAPLG00000006318 ARL13A (ENSAPLG00000031098) ATP11C (ENSAPLG00000005048) #18 MCF2 (ENSAPLG00000004315) #19 F9 (ENSAPLG00000010425) #20 FGF13 (ENSAPLG00000010508) #22 ZIC3 (ENSAPLG00000028802) #24 ENSAPLG00000010658 #25 ENSAPLG00000029262 #26 ARHGEF6 (ENSAPLG00000011391) #27 CD40LG (ENSAPLG00000012271) #28 VGLL1 (ENSAPLG00000012400) #29 HTATSF1 (ENSAPLG00000012401) #30 ENSAPLG00000012590 ENSAPLG00000022516 ENSAPLG00000012655 #32 FHL1 (ENSAPLG00000031131) #33 SLC9A6 (ENSAPLG00000012890) #34 MMGT1 (ENSAPLG00000018112) #35 INTS6L (ENSAPLG00000013725) #36 MOSPD1 (ENSAPLG00000013746) African ostrich MODERN SPECIES 970 DIAPH2 (ENSSCUG00000018344) PCDH19 (ENSSCUG00000016280) TNMD (ENSSCUG00000016282) TSPAN6 (ENSSCUG00000016283) SYTL4 (ENSSCUG00000016287) TRMT12 (ENSSCUG00000016289) CSTF2 (ENSSCUG00000016292) NOX1 (ENSSCUG00000016304) ENSSCUG00000016312 ATP11C (ENSSCUG00000016320) #18 MCF2 (ENSSCUG00000016334) #19 F9 (ENSSCUG00000016341) #20 FGF13 (ENSSCUG00000016350) #22 ENSSCUG00000016381 #25 ENSSCUG00000016406 #26 ARHGEF6 (ENSSCUG00000016414) #27 CD40LG (ENSSCUG00000016424) #28 VGLL1 (ENSSCUG00000016430) #29 HTATSF1 (ENSSCUG00000016438) #30 BRS3 (ENSSCUG00000016448) #31 ENSSCUG00000016455 ENSSCUG00000016464 #32 FHL1 (ENSSCUG00000016469) #33 SLC9A6 (ENSSCUG00000016474) #34 MMGT1 (ENSSCUG00000016496) #35 INTS6L (ENSSCUG00000016503) #36 MOSPD1 (ENSSCUG00000016514) ENSSCUG00000016520 Cryptodira ANCESTRAL SPECIES 29 ENSGT00940000153669.b ENSGT00940000157029 ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000157452 ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT01100000263502.A.a.a.a.a ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 Testudinoidea ANCESTRAL SPECIES 24 ENSGT00940000157029 ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000157452.q ENSGT00940000157452.r ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000165216 ENSGT00940000163390.a #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT01100000263502.A.a.a.a.a ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Testudinidae ANCESTRAL SPECIES 21 ENSGT00940000157029 ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000157452.q ENSGT00940000157452.r ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000165216 ENSGT00940000163390.a #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 ENSGT00940000155266 Abingdon island giant tortoise MODERN SPECIES 288 SOX3 (ENSCABG00000011008) #11 ATP11C (ENSCABG00000010993) #18 MCF2 (ENSCABG00000010523) #19 F9 (ENSCABG00000010467) #20 FGF13 (ENSCABG00000010462) #22 ZIC3 (ENSCABG00000010460) #24 ENSCABG00000010020 #25 ENSCABG00000010005 #26 ARHGEF6 (ENSCABG00000010002) #27 CD40LG (ENSCABG00000009990) #28 ENSCABG00000009987 ENSCABG00000009986 VGLL1 (ENSCABG00000009984) #29 HTATSF1 (ENSCABG00000009981) #30 BRS3 (ENSCABG00000009980) #31 MAP7D3 (ENSCABG00000009961) #32 FHL1 (ENSCABG00000009930) #33 SLC9A6 (ENSCABG00000009572) #34 MMGT1 (ENSCABG00000009560) #35 INTS6L (ENSCABG00000008556) #36 Goode s thornscrub tortoise MODERN SPECIES 23 MAMLD1 (ENSGEVG00005012154) ENSGEVG00005012176 ENSGEVG00005012198 TMEM185A (ENSGEVG00005012246) ENSGEVG00005012285 IDS (ENSGEVG00005012312) ENSGEVG00005012369 ENSGEVG00005012672 FMR1 (ENSGEVG00005012753) SLITRK2 (ENSGEVG00005012826) SLITRK4 (ENSGEVG00005012843) #9 SOX3 (ENSGEVG00005012862) #11 ATP11C (ENSGEVG00005013525) #18 MCF2 (ENSGEVG00005016390) #19 F9 (ENSGEVG00005016537) #20 FGF13 (ENSGEVG00005016687) #22 ZIC3 (ENSGEVG00005016724) #24 ENSGEVG00005016761 ENSGEVG00005016815 #25 ENSGEVG00005016877 #25 ENSGEVG00005016908 #26 ARHGEF6 (ENSGEVG00005016956) #27 CD40LG (ENSGEVG00005017037) #28 VGLL1 (ENSGEVG00005017059) #29 HTATSF1 (ENSGEVG00005017089) #30 BRS3 (ENSGEVG00005017120) #31 MAP7D3 (ENSGEVG00005017266) #32 FHL1 (ENSGEVG00005017477) #33 SLC9A6 (ENSGEVG00005017582) #34 MMGT1 (ENSGEVG00005017911) #35 INTS6L (ENSGEVG00005017945) #36 Emydidae ANCESTRAL SPECIES 32 ENSGT00940000157029 ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000157452.q ENSGT00940000157452.r ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516.r #20 ENSGT00940000162313 #22 ENSGT00940000163347 ENSGT00940000160788 #24 ENSGT00940000165216 ENSGT00940000163390.a #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT01100000263502.A.a.a.a.a ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT01030000234935 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 Three-toed box turtle MODERN SPECIES 61 MTM1 (ENSTMTG00000023221) MAMLD1 (ENSTMTG00000023220) ENSTMTG00000023219 ENSTMTG00000023218 TMEM185A (ENSTMTG00000023217) IDS (ENSTMTG00000023216) ENSTMTG00000023215 ENSTMTG00000023214 FMR1 (ENSTMTG00000023213) SLITRK2 (ENSTMTG00000023211) SLITRK4 (ENSTMTG00000023210) #9 SOX3 (ENSTMTG00000023209) #11 ATP11C (ENSTMTG00000023208) #18 MCF2 (ENSTMTG00000023207) #19 ENSTMTG00000023206 #20 FGF13 (ENSTMTG00000023205) #22 ZIC3 (ENSTMTG00000023204) #24 ENSTMTG00000023203 #24 ENSTMTG00000023202 ENSTMTG00000023201 #25 ENSTMTG00000023199 #26 ARHGEF6 (ENSTMTG00000023198) #27 CD40LG (ENSTMTG00000023197) #28 ENSTMTG00000023196 ENSTMTG00000023195 VGLL1 (ENSTMTG00000023194) #29 HTATSF1 (ENSTMTG00000023193) #30 BRS3 (ENSTMTG00000023192) #31 ENSTMTG00000023191 MAP7D3 (ENSTMTG00000023190) #32 FHL1 (ENSTMTG00000023189) #33 Lepidosauria ANCESTRAL SPECIES 30 ENSGT00940000153669.b ENSGT00940000157029 ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000157452 ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516 #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT01100000263502.A.a.a.a.a ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000167502 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 tuatara MODERN SPECIES 1491 CD99L2 (ENSSPUG00000013859) MTMR1 (ENSSPUG00000013970) MTM1 (ENSSPUG00000013987) MAMLD1 (ENSSPUG00000014011) ENSSPUG00000014026 ENSSPUG00000014033 ENSSPUG00000014041 ENSSPUG00000014048 IDS (ENSSPUG00000014056) FMR1 (ENSSPUG00000014177) ENSSPUG00000014199 SOX3 (ENSSPUG00000014219) #11 ATP11C (ENSSPUG00000014232) #18 MCF2 (ENSSPUG00000014316) #19 F9 (ENSSPUG00000014572) #20 FGF13 (ENSSPUG00000014595) #22 ENSSPUG00000014620 #25 ENSSPUG00000014648 #26 ARHGEF6 (ENSSPUG00000014711) #27 CD40LG (ENSSPUG00000014758) #28 HTATSF1 (ENSSPUG00000014767) #30 BRS3 (ENSSPUG00000014779) #31 MAP7D3 (ENSSPUG00000014797) #32 FHL1 (ENSSPUG00000014828) #33 SLC9A6 (ENSSPUG00000014846) #34 MMGT1 (ENSSPUG00000014875) #35 INTS6L (ENSSPUG00000014885) #36 MOSPD1 (ENSSPUG00000000026) PABIR2 (ENSSPUG00000000074) HPRT1 (ENSSPUG00000000093) PHF6 (ENSSPUG00000000121) Episquamata ANCESTRAL SPECIES 14 ENSGT00940000157029 ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000157452 ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516.o #20 ENSGT00940000159516.p #20 ENSGT00940000162313 #22 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT01100000263502.A.a.a.a.a ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000167502 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 Toxicofera DUPLICATION Toxicofera ANCESTRAL SPECIES 17 ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000157452 ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516.o #20 ENSGT00960000187127.c ENSGT00940000159516.p #20 ENSGT00940000162313.g #22 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000167502 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 Elapidae ANCESTRAL SPECIES 14 ENSGT00730000111366 ENSGT00390000012182 ENSGT00940000157452 ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a.i ENSGT00950000182974.a.a.a.a.j ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516.o #20 ENSGT00940000159516.p.a #20 ENSGT00940000162313.g #22 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT01070000253816.a.b #28 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000167502 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 Elapidae_a ANCESTRAL SPECIES 46 ENSGT00390000012182 ENSGT00940000157452 ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a.i ENSGT00950000182974.a.a.a.a.j ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516.o #20 ENSGT00940000159516.p.a #20 ENSGT00940000162313.g #22 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT00990000212640 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000167502 ENSGT00940000162744 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 Acanthophiinae ANCESTRAL SPECIES 45 ENSGT00390000012182 ENSGT00940000157452 ENSGT00940000158388 ENSGT00940000156803 ENSGT00950000182974.a.a.a.a.i ENSGT00950000182974.a.a.a.a.j ENSGT00950000183189.a.b.b ENSGT00940000161248 ENSGT00940000160971 #9 ENSGT00940000162359 #11 ENSGT00940000158878 #18 ENSGT00940000156974 #19 ENSGT00940000159516.o #20 ENSGT00940000159516.p.a #20 ENSGT00940000162313.g #22 ENSGT00940000160788 #24 ENSGT00940000163390 #25 ENSGT00940000153425 #26 ENSGT00940000158723 #27 ENSGT00990000212640 ENSGT00530000063353.b #29 ENSGT00390000009902 #30 ENSGT01100000263512.b.b.b #31 ENSGT00940000167502 ENSGT00950000182941.b.a #32 ENSGT00940000154833 #33 ENSGT00940000153460.c.b #34 ENSGT00510000047104 #35 ENSGT00390000016655.a.b #36 ENSGT00940000155266 Mainland tiger snake MODERN SPECIES 248 ATP11C (ENSNSUG00000016345) #18 MCF2 (ENSNSUG00000016346) #19 ENSNSUG00000016355 #20 ENSNSUG00000016356 #20 FGF13 (ENSNSUG00000016357) #22 ZIC3 (ENSNSUG00000016358) #24 ENSNSUG00000016359 #25 ENSNSUG00000016360 #26 ARHGEF6 (ENSNSUG00000016362) #27 ENSNSUG00000016363 VGLL1 (ENSNSUG00000016364) #29 HTATSF1 (ENSNSUG00000016365) #30 BRS3 (ENSNSUG00000016366) #31 ENSNSUG00000016382 ENSNSUG00000016383 #32 FHL1 (ENSNSUG00000016385) #33 SLC9A6 (ENSNSUG00000016386) #34 INTS6L (ENSNSUG00000016488) #36 MOSPD1 (ENSNSUG00000016543) PABIR2 (ENSNSUG00000016545) Eastern brown snake MODERN SPECIES 86 ENSPTXG00000011142 ENSPTXG00000011139 TMEM185A (ENSPTXG00000011136) IDS (ENSPTXG00000011089) ENSPTXG00000011088 ENSPTXG00000011087 FMR1 (ENSPTXG00000011086) SLITRK2 (ENSPTXG00000011085) SLITRK4 (ENSPTXG00000011084) #9 SOX3 (ENSPTXG00000011083) #11 ATP11C (ENSPTXG00000011018) #18 MCF2 (ENSPTXG00000010997) #19 ENSPTXG00000010995 #20 ENSPTXG00000013420 #20 FGF13 (ENSPTXG00000013419) #22 ZIC3 (ENSPTXG00000013418) #24 ENSPTXG00000013416 #25 ENSPTXG00000013414 #26 ARHGEF6 (ENSPTXG00000013413) #27 ENSPTXG00000013412 VGLL1 (ENSPTXG00000013411) #29 HTATSF1 (ENSPTXG00000013410) #30 BRS3 (ENSPTXG00000013380) #31 ENSPTXG00000013377 FHL1 (ENSPTXG00000013376) #33 SLC9A6 (ENSPTXG00000012711) #34 MMGT1 (ENSPTXG00000012706) #35 INTS6L (ENSPTXG00000012704) #36 MOSPD1 (ENSPTXG00000012702) PABIR2 (ENSPTXG00000012696) Indian cobra MODERN SPECIES 13 MTMR1 (ENSNNAG00000017761) MTM1 (ENSNNAG00000017766) MAMLD1 (ENSNNAG00000017769) ENSNNAG00000017773 ENSNNAG00000017778 TMEM185A (ENSNNAG00000017798) IDS (ENSNNAG00000017800) ENSNNAG00000017813 FMR1 (ENSNNAG00000017819) SLITRK2 (ENSNNAG00000017823) ATP11C (ENSNNAG00000017854) #18 ENSNNAG00000017937 #19 ENSNNAG00000017938 #20 ENSNNAG00000017941 #20 ENSNNAG00000017942 FGF13 (ENSNNAG00000017944) #22 ZIC3 (ENSNNAG00000017947) #24 ENSNNAG00000017951 #25 ENSNNAG00000017958 #26 ARHGEF6 (ENSNNAG00000017970) #27 CD40LG (ENSNNAG00000017980) #28 VGLL1 (ENSNNAG00000017986) #29 HTATSF1 (ENSNNAG00000017993) #30 BRS3 (ENSNNAG00000018005) #31 ENSNNAG00000018021 FHL1 (ENSNNAG00000018025) #33 SLC9A6 (ENSNNAG00000018039) #34 MMGT1 (ENSNNAG00000018061) #35 INTS6L (ENSNNAG00000018069) #36 MOSPD1 (ENSNNAG00000018087) PABIR2 (ENSNNAG00000018092) Lizard MODERN SPECIES 524 ENSACAG00000008514 #22 Toxicofera ANCESTRAL SPECIES ENSGT00940000162313.h #22 Lizard MODERN SPECIES 1641 ENSACAG00000041324 #22