Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000161248 #8	ENSGT00860000136220 #9	ENSGT00410000025802.g.b.q.b #10	ENSGT00940000160971 #11	ENSGT00940000154972.eb.b.a.a #12	ENSGT00700000106222 #13	ENSGT00520000060073	ENSGT00940000154972.fb #14	ENSGT00940000162721 #15	ENSGT00940000162359 #16	ENSGT00390000002886.b.b #17	ENSGT00390000004226 #18	ENSGT00940000158878 #19	ENSGT00940000156974 #20	ENSGT00940000159516 #21	ENSGT00940000162313 #22	ENSGT00940000162864 #23	ENSGT00940000160788 #24	ENSGT00940000162539 #25	ENSGT00940000163390 #26	ENSGT00940000153425.a.a.b.b #27	ENSGT00940000158723 #28	ENSGT01070000253816.a.b #29	ENSGT00530000063353.b #30	ENSGT00390000009902 #31	ENSGT01100000263512.b.b.b #32	ENSGT00940000162744 #33	ENSGT00950000182941.b.a #34	ENSGT00940000154833 #35	ENSGT00940000153460.c.b #36	ENSGT00510000047104 #37
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000161248 #8	ENSGT00860000136220 #9	ENSGT00410000025802.g.b.q.b #10	ENSGT00940000160971 #11	ENSGT00940000154972.eb.b.a.a #12	ENSGT00700000106222 #13	ENSGT00520000060073	ENSGT00940000154972.fb #14	ENSGT00940000162721 #15	ENSGT00940000162359 #16	ENSGT00390000002886.b.b #17	ENSGT00390000004226 #18	ENSGT00940000158878 #19	ENSGT00940000156974 #20	ENSGT00940000159516 #21	ENSGT00940000162313 #22	ENSGT00940000162864 #23	ENSGT00940000160788 #24	ENSGT00940000162539 #25	ENSGT00940000163390 #26	ENSGT00940000153425.a.a.b.b #27	ENSGT00940000158723 #28	ENSGT01070000253816.a.b #29	ENSGT00530000063353.b #30	ENSGT00390000009902 #31	ENSGT01100000263512.b.b.b #32	ENSGT00940000162744 #33	ENSGT00950000182941.b.a #34	ENSGT00940000154833 #35	ENSGT00940000153460.c.b #36	ENSGT00510000047104 #37
Mouse	MODERN SPECIES	37	Gm1140 (ENSMUSG00000079578) #7	Slitrk2 (ENSMUSG00000036790) #8	4930447F04Rik (ENSMUSG00000031182) #9	Ctag2 (ENSMUSG00000031181) #10	Slitrk4 (ENSMUSG00000046699) #11	Magea9 (ENSMUSG00000031179) #12	Gm6760 (ENSMUSG00000079579) #13	Magec2 (ENSMUSG00000045330) #14	Ldoc1 (ENSMUSG00000057615) #15	Sox3 (ENSMUSG00000045179) #16	Gm715 (ENSMUSG00000082226) #17	Gm7073 (ENSMUSG00000079583) #18	Atp11c (ENSMUSG00000062949) #19	Mcf2 (ENSMUSG00000031139) #20	F9 (ENSMUSG00000031138) #21	Fgf13 (ENSMUSG00000031137) #22	Magea13 (ENSMUSG00000046180) #23	Zic3 (ENSMUSG00000067860) #24	Gpr101 (ENSMUSG00000036357) #25	Tm9sf5 (ENSMUSG00000079584) #26	Rbmx (ENSMUSG00000031134) #27	Arhgef6 (ENSMUSG00000031133) #28	Cd40lg (ENSMUSG00000031132) #29	Vgll1 (ENSMUSG00000031131) #30	Htatsf1 (ENSMUSG00000067873) #31	Brs3 (ENSMUSG00000031130) #32	Adgrg4 (ENSMUSG00000053852) #33	Map7d3 (ENSMUSG00000067878) #34	Fhl1 (ENSMUSG00000023092) #35	Slc9a6 (ENSMUSG00000060681) #36	Mmgt1 (ENSMUSG00000061273) #37
Mus_C	ANCESTRAL SPECIES	27	ENSGT00390000000062.x.b.l.a #7	ENSGT00940000161248 #8	ENSGT00860000136220 #9	ENSGT00410000025802.g.b.q.b #10	ENSGT00940000160971 #11	ENSGT00940000154972.eb.b.a.a #12	ENSGT00700000106222 #13	ENSGT00520000060073	ENSGT00940000154972.fb #14	ENSGT00940000162721 #15	ENSGT00940000162359 #16	ENSGT00390000004226 #18	ENSGT00940000158878 #19	ENSGT00940000156974 #20	ENSGT00940000159516 #21	ENSGT00940000162313 #22	ENSGT00940000162864 #23	ENSGT00940000160788 #24	ENSGT00940000162539 #25	ENSGT00940000163390 #26	ENSGT00940000153425.a.a.b.b #27	ENSGT00940000158723 #28	ENSGT01070000253816.a.b #29	ENSGT00530000063353.b #30	ENSGT00390000009902 #31	ENSGT01100000263512.b.b.b #32	ENSGT00940000162744 #33	ENSGT00950000182941.b.a #34	ENSGT00940000154833 #35	ENSGT00940000153460.c.b #36	ENSGT00510000047104 #37
spretus	MODERN SPECIES	19	MGP_SPRETEiJ_G0034273 #7	Slitrk2 (MGP_SPRETEiJ_G0034272) #8	4930447F04Rik (MGP_SPRETEiJ_G0034271) #9	Ctag2 (MGP_SPRETEiJ_G0034270) #10	Slitrk4 (MGP_SPRETEiJ_G0034269) #11	Magea9 (MGP_SPRETEiJ_G0034268) #12	Gm6760 (MGP_SPRETEiJ_G0034267) #13	MGP_SPRETEiJ_G0034266	Magec2 (MGP_SPRETEiJ_G0034265) #14	Ldoc1 (MGP_SPRETEiJ_G0034264) #15	Sox3 (MGP_SPRETEiJ_G0034263) #16	Gm7073 (MGP_SPRETEiJ_G0034262) #18	Atp11c (MGP_SPRETEiJ_G0034261) #19	Mcf2 (MGP_SPRETEiJ_G0034260) #20	F9 (MGP_SPRETEiJ_G0034259) #21	Fgf13 (MGP_SPRETEiJ_G0034258) #22	Magea13 (MGP_SPRETEiJ_G0034257) #23	Zic3 (MGP_SPRETEiJ_G0034256) #24	Gpr101 (MGP_SPRETEiJ_G0034255) #25	Tm9sf5 (MGP_SPRETEiJ_G0034254) #26	Rbmx (MGP_SPRETEiJ_G0034253) #27	Arhgef6 (MGP_SPRETEiJ_G0034252) #28	Cd40lg (MGP_SPRETEiJ_G0034251) #29	Vgll1 (MGP_SPRETEiJ_G0034250) #30	Htatsf1 (MGP_SPRETEiJ_G0034249) #31	Brs3 (MGP_SPRETEiJ_G0034248) #32	Adgrg4 (MGP_SPRETEiJ_G0034247) #33	Map7d3 (MGP_SPRETEiJ_G0034246) #34	Fhl1 (MGP_SPRETEiJ_G0034245) #35	Slc9a6 (MGP_SPRETEiJ_G0034244) #36	Mmgt1 (MGP_SPRETEiJ_G0034243) #37
Steppe mouse	MODERN SPECIES	2356																Fgf13 (ENSMSIG00000013334) #22
Ryukyu mouse	MODERN SPECIES	19	Slitrk2 (MGP_CAROLIEiJ_G0033119) #8	4930447F04Rik (MGP_CAROLIEiJ_G0033118) #9	Ctag2 (MGP_CAROLIEiJ_G0033117) #10	Slitrk4 (MGP_CAROLIEiJ_G0033116) #11	Magea9 (MGP_CAROLIEiJ_G0033115) #12	Gm6760 (MGP_CAROLIEiJ_G0033114) #13	MGP_CAROLIEiJ_G0033113	Magec2 (MGP_CAROLIEiJ_G0033112) #14	Ldoc1 (MGP_CAROLIEiJ_G0033111) #15	MGP_CAROLIEiJ_G0033110	Sox3 (MGP_CAROLIEiJ_G0033109) #16	Gm7073 (MGP_CAROLIEiJ_G0033108) #18	Atp11c (MGP_CAROLIEiJ_G0033107) #19	Mcf2 (MGP_CAROLIEiJ_G0033106) #20	F9 (MGP_CAROLIEiJ_G0033105) #21	Fgf13 (MGP_CAROLIEiJ_G0033104) #22	Magea13 (MGP_CAROLIEiJ_G0033103) #23	MGP_CAROLIEiJ_G0033102	Zic3 (MGP_CAROLIEiJ_G0033101) #24	Gpr101 (MGP_CAROLIEiJ_G0033100) #25	Tm9sf5 (MGP_CAROLIEiJ_G0033099) #26	Rbmx (MGP_CAROLIEiJ_G0033098) #27	Arhgef6 (MGP_CAROLIEiJ_G0033097) #28	Cd40lg (MGP_CAROLIEiJ_G0033096) #29	MGP_CAROLIEiJ_G0033095 #30	Htatsf1 (MGP_CAROLIEiJ_G0033094) #31	Brs3 (MGP_CAROLIEiJ_G0033093) #32	Adgrg4 (MGP_CAROLIEiJ_G0033092) #33	Map7d3 (MGP_CAROLIEiJ_G0033091) #34	Fhl1 (MGP_CAROLIEiJ_G0033090) #35	Slc9a6 (MGP_CAROLIEiJ_G0033089) #36