Mus	ANCESTRAL SPECIES	4	ENSGT00940000154923.C	ENSGT00940000154550.a.f #7	ENSGT00390000004660.C.a.a #8	ENSGT00950000182852.A.a.a #9	ENSGT00940000155724 #10	ENSGT00940000156078 #11	ENSGT00530000063503.a.b #12	ENSGT01010000222287.B.b.a.b.b #13	ENSGT00390000013856 #14	ENSGT00390000012588 #15	ENSGT00950000183107.a.a #16	ENSGT00950000182802.C #17	ENSGT00560000077266.a #18	ENSGT00940000159157 #19	ENSGT01050000244838.D #21	ENSGT00950000182984.a #22	ENSGT00940000156533.b #23	ENSGT00940000157191 #24	ENSGT00940000156277 #25	ENSGT00940000154868.a.a #26	ENSGT00390000003986 #27	ENSGT00390000016421.b.b #28	ENSGT00390000000509 #29	ENSGT00390000007224.a #30	ENSGT00950000183134.c.a.b #31	ENSGT00390000000155.b #32	ENSGT00950000183068.b #33	ENSGT00940000161538 #34	ENSGT00940000155536 #35	ENSGT00650000093438 #36	ENSGT00390000009631 #37
Shrew mouse	MODERN SPECIES	1	Cox7a2 (MGP_PahariEiJ_G0015341) #7	Tmem30a (MGP_PahariEiJ_G0015342) #8	Filip1 (MGP_PahariEiJ_G0015343) #9	Senp6 (MGP_PahariEiJ_G0015344) #10	Myo6 (MGP_PahariEiJ_G0015345) #11	Impg1 (MGP_PahariEiJ_G0015346) #12	Htr1b (MGP_PahariEiJ_G0015347) #13	Mei4 (MGP_PahariEiJ_G0015348) #14	Irak1bp1 (MGP_PahariEiJ_G0015349) #15	Phip (MGP_PahariEiJ_G0015350) #16	Hmgn3 (MGP_PahariEiJ_G0015351) #17	Lca5 (MGP_PahariEiJ_G0015352) #18	Sh3bgrl2 (MGP_PahariEiJ_G0015353) #19	MGP_PahariEiJ_G0015354 #20	Elovl4 (MGP_PahariEiJ_G0015355) #21	Ttk (MGP_PahariEiJ_G0015356) #22	Bckdhb (MGP_PahariEiJ_G0015357) #23	Tent5a (MGP_PahariEiJ_G0015358) #24	Ibtk (MGP_PahariEiJ_G0015359) #25	Tpbg (MGP_PahariEiJ_G0015360) #26	Ube2cbp (MGP_PahariEiJ_G0015361) #27	Dop1a (MGP_PahariEiJ_G0015362) #28	Pgm3 (MGP_PahariEiJ_G0015363) #29	Rwdd2a (MGP_PahariEiJ_G0015364) #30	Me1 (MGP_PahariEiJ_G0015365) #31	Prss35 (MGP_PahariEiJ_G0015366) #32	Snap91 (MGP_PahariEiJ_G0015367) #33	MGP_PahariEiJ_G0015368 #34	Cyb5r4 (MGP_PahariEiJ_G0015369) #35	Mrap2 (MGP_PahariEiJ_G0015370) #36	Cep162 (MGP_PahariEiJ_G0015371) #37
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000154923.C	ENSGT00940000154550.a.f #7	ENSGT00390000004660.C.a.a #8	ENSGT00950000182852.A.a.a #9	ENSGT00940000155724 #10	ENSGT00940000156078 #11	ENSGT00530000063503.a.b #12	ENSGT01010000222287.B.b.a.b.b #13	ENSGT00390000013856 #14	ENSGT00390000012588 #15	ENSGT00950000183107.a.a #16	ENSGT00950000182802.C #17	ENSGT00560000077266.a #18	ENSGT00940000159157 #19	ENSGT01050000244838.D #21	ENSGT00950000182984.a #22	ENSGT00940000156533.b #23	ENSGT00940000157191 #24	ENSGT00940000156277 #25	ENSGT00940000154868.a.a #26	ENSGT00390000003986 #27	ENSGT00390000016421.b.b #28	ENSGT00390000000509 #29	ENSGT00390000007224.a #30	ENSGT00950000183134.c.a.b #31	ENSGT00390000000155.b #32	ENSGT00950000183068.b #33	ENSGT00940000161538 #34	ENSGT00940000155536 #35	ENSGT00650000093438 #36	ENSGT00390000009631 #37
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000154923.C	ENSGT00940000154550.a.f #7	ENSGT00390000004660.C.a.a #8	ENSGT00950000182852.A.a.a #9	ENSGT00940000155724 #10	ENSGT00940000156078 #11	ENSGT00530000063503.a.b #12	ENSGT01010000222287.B.b.a.b.b #13	ENSGT00390000013856 #14	ENSGT00390000012588 #15	ENSGT00950000183107.a.a #16	ENSGT00950000182802.C #17	ENSGT00560000077266.a #18	ENSGT00940000159157 #19	ENSGT01050000244838.D #21	ENSGT00950000182984.a #22	ENSGT00940000156533.b #23	ENSGT00940000157191 #24	ENSGT00940000156277 #25	ENSGT00940000154868.a.a #26	ENSGT00390000003986 #27	ENSGT00390000016421.b.b #28	ENSGT00390000000509 #29	ENSGT00390000007224.a #30	ENSGT00950000183134.c.a.b #31	ENSGT00390000000155.b #32	ENSGT00950000183068.b #33	ENSGT00940000161538 #34	ENSGT00940000155536 #35	ENSGT00650000093438 #36	ENSGT00390000009631 #37
Mouse	MODERN SPECIES	18	Col12a1 (ENSMUSG00000032332)	Cox7a2 (ENSMUSG00000032330) #7	Tmem30a (ENSMUSG00000032328) #8	Filip1 (ENSMUSG00000034898) #9	Senp6 (ENSMUSG00000034252) #10	Myo6 (ENSMUSG00000033577) #11	Impg1 (ENSMUSG00000032343) #12	Htr1b (ENSMUSG00000049511) #13	Mei4 (ENSMUSG00000043289) #14	Irak1bp1 (ENSMUSG00000032251) #15	Phip (ENSMUSG00000032253) #16	Hmgn3 (ENSMUSG00000066456) #17	Lca5 (ENSMUSG00000032258) #18	Sh3bgrl2 (ENSMUSG00000032261) #19	Elovl4 (ENSMUSG00000032262) #21	Ttk (ENSMUSG00000038379) #22	Bckdhb (ENSMUSG00000032263) #23	Tent5a (ENSMUSG00000032265) #24	Ibtk (ENSMUSG00000035941) #25	Tpbg (ENSMUSG00000035274) #26	Ube2cbp (ENSMUSG00000032415) #27	Dop1a (ENSMUSG00000034973) #28	Pgm3 (ENSMUSG00000056131) #29	Rwdd2a (ENSMUSG00000032417) #30	Me1 (ENSMUSG00000032418) #31	Prss35 (ENSMUSG00000033491) #32	Snap91 (ENSMUSG00000033419) #33	Ripply2 (ENSMUSG00000047897) #34	Cyb5r4 (ENSMUSG00000032872) #35	Mrap2 (ENSMUSG00000042761) #36	Cep162 (ENSMUSG00000056919) #37
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000154923.C	ENSGT00940000154550.a.f #7	ENSGT00390000004660.C.a.a #8	ENSGT00950000182852.A.a.a #9	ENSGT00940000155724 #10	ENSGT00940000156078 #11	ENSGT00530000063503.a.b #12	ENSGT01010000222287.B.b.a.b.b #13	ENSGT00390000013856 #14	ENSGT00390000012588 #15	ENSGT00950000183107.a.a #16	ENSGT00950000182802.C #17	ENSGT00560000077266.a #18	ENSGT00940000159157 #19	ENSGT01050000244838.D #21	ENSGT00950000182984.a #22	ENSGT00940000156533.b #23	ENSGT00940000157191 #24	ENSGT00940000156277 #25	ENSGT00940000154868.a.a #26	ENSGT00390000003986 #27	ENSGT00390000016421.b.b #28	ENSGT00390000000509 #29	ENSGT00390000007224.a #30	ENSGT00950000183134.c.a.b #31	ENSGT00390000000155.b #32	ENSGT00950000183068.b #33	ENSGT00940000161538 #34	ENSGT00940000155536.o #35	ENSGT00650000093438 #36	ENSGT00390000009631 #37
Steppe mouse	MODERN SPECIES	3117											Irak1bp1 (ENSMSIG00000020638) #15	Phip (ENSMSIG00000020676) #16	Hmgn3 (ENSMSIG00000020701) #17	Sh3bgrl2 (ENSMSIG00000020824) #19	Elovl4 (ENSMSIG00000020869) #21	Ttk (ENSMSIG00000020879) #22	Bckdhb (ENSMSIG00000020949) #23	ENSMSIG00000021012
spretus	MODERN SPECIES	18	Col12a1 (MGP_SPRETEiJ_G0033613)	Cox7a2 (MGP_SPRETEiJ_G0033614) #7	Tmem30a (MGP_SPRETEiJ_G0033615) #8	Filip1 (MGP_SPRETEiJ_G0033616) #9	Senp6 (MGP_SPRETEiJ_G0033617) #10	Myo6 (MGP_SPRETEiJ_G0033618) #11	Impg1 (MGP_SPRETEiJ_G0033619) #12	Htr1b (MGP_SPRETEiJ_G0033620) #13	Mei4 (MGP_SPRETEiJ_G0033621) #14	Irak1bp1 (MGP_SPRETEiJ_G0033622) #15	Phip (MGP_SPRETEiJ_G0033623) #16	Hmgn3 (MGP_SPRETEiJ_G0033624) #17	Lca5 (MGP_SPRETEiJ_G0033625) #18	Sh3bgrl2 (MGP_SPRETEiJ_G0033626) #19	Elovl4 (MGP_SPRETEiJ_G0033627) #21	Ttk (MGP_SPRETEiJ_G0033628) #22	Bckdhb (MGP_SPRETEiJ_G0033629) #23	Tent5a (MGP_SPRETEiJ_G0033630) #24	Ibtk (MGP_SPRETEiJ_G0033631) #25	Tpbg (MGP_SPRETEiJ_G0033632) #26	Ube2cbp (MGP_SPRETEiJ_G0033633) #27	Dop1a (MGP_SPRETEiJ_G0033634) #28	Pgm3 (MGP_SPRETEiJ_G0033635) #29	Rwdd2a (MGP_SPRETEiJ_G0033636) #30	Me1 (MGP_SPRETEiJ_G0033637) #31	Prss35 (MGP_SPRETEiJ_G0033638) #32	Snap91 (MGP_SPRETEiJ_G0033639) #33	Ripply2 (MGP_SPRETEiJ_G0033640) #34	Cyb5r4 (MGP_SPRETEiJ_G0033641) #35	Mrap2 (MGP_SPRETEiJ_G0033642) #36	Cep162 (MGP_SPRETEiJ_G0033643) #37
Ryukyu mouse	MODERN SPECIES	18	Col12a1 (MGP_CAROLIEiJ_G0032473)	Cox7a2 (MGP_CAROLIEiJ_G0032474) #7	Tmem30a (MGP_CAROLIEiJ_G0032475) #8	Filip1 (MGP_CAROLIEiJ_G0032476) #9	Senp6 (MGP_CAROLIEiJ_G0032477) #10	Myo6 (MGP_CAROLIEiJ_G0032478) #11	Impg1 (MGP_CAROLIEiJ_G0032479) #12	Htr1b (MGP_CAROLIEiJ_G0032481) #13	Mei4 (MGP_CAROLIEiJ_G0032482) #14	Irak1bp1 (MGP_CAROLIEiJ_G0032483) #15	Phip (MGP_CAROLIEiJ_G0032484) #16	Hmgn3 (MGP_CAROLIEiJ_G0032485) #17	Lca5 (MGP_CAROLIEiJ_G0032486) #18	Sh3bgrl2 (MGP_CAROLIEiJ_G0032487) #19	Elovl4 (MGP_CAROLIEiJ_G0032488) #21	Ttk (MGP_CAROLIEiJ_G0032489) #22	MGP_CAROLIEiJ_G0032490 #23	Tent5a (MGP_CAROLIEiJ_G0032491) #24	Ibtk (MGP_CAROLIEiJ_G0032492) #25	Tpbg (MGP_CAROLIEiJ_G0032493) #26	Ube2cbp (MGP_CAROLIEiJ_G0032494) #27	Dop1a (MGP_CAROLIEiJ_G0032495) #28	MGP_CAROLIEiJ_G0032496 #29	Rwdd2a (MGP_CAROLIEiJ_G0032497) #30	MGP_CAROLIEiJ_G0032498 ##31	Prss35 (MGP_CAROLIEiJ_G0032499) #32	Snap91 (MGP_CAROLIEiJ_G0032500) #33	MGP_CAROLIEiJ_G0032501 #34	MGP_CAROLIEiJ_G0032502 #35	Mrap2 (MGP_CAROLIEiJ_G0032503) #36	Tbx18 (MGP_CAROLIEiJ_G0032505)