Vertebrata	ANCESTRAL SPECIES	606																ENSGT00940000157490 #22	ENSGT00950000182959.b
Gnathostomata	ANCESTRAL SPECIES	20	ENSGT00390000001511	ENSGT00950000182939.b.b	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00940000154404.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00530000064489	ENSGT01060000250538	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000186338	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b
Euteleostomi	ANCESTRAL SPECIES	19	ENSGT00390000001511	ENSGT00950000182939.b.b	ENSGT00940000156433.B	ENSGT01030000235062	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00940000154404.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00530000064489	ENSGT01060000250538	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01050000244900.a.a.a.a.a	ENSGT00390000009310	ENSGT00940000170563
Sarcopterygii	ANCESTRAL SPECIES	21	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT01030000235062	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00950000182959.b.a.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a	ENSGT00940000155818	ENSGT00390000015066
Tetrapoda	ANCESTRAL SPECIES	9	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT01030000235062	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123
Amniota	ANCESTRAL SPECIES	20	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT01030000235062	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000175801	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b
Mammalia	ANCESTRAL SPECIES	9	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT01030000235062	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000175801	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123
Theria	ANCESTRAL SPECIES	8	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000175801	ENSGT00390000017491.s.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000156267	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000175801	ENSGT00390000017491.s.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000164956
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000156267	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000175801	ENSGT00390000017491.s.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l	ENSGT01030000235549	ENSGT00940000153201.j.k.a.b	ENSGT00940000153201.j.k.a.a.b	ENSGT00940000161479
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084
Glires	ANCESTRAL SPECIES	1	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084
Lagomorpha	ANCESTRAL SPECIES	4							ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Pika	MODERN SPECIES	2845														ABCC8 (ENSOPRG00000008172) #20	USH1C (ENSOPRG00000008210) #21	OTOG (ENSOPRG00000008249) #22
Rabbit	MODERN SPECIES	466						SOX6 (ENSOCUG00000012557)	C11orf58 (ENSOCUG00000036088)	PLEKHA7 (ENSOCUG00000017373)	RPS13 (ENSOCUG00000005536)	PIK3C2A (ENSOCUG00000005541)	NUCB2 (ENSOCUG00000005131)	ENSOCUG00000029474	ENSOCUG00000014161 #20	ENSOCUG00000039600 #20	USH1C (ENSOCUG00000002028) #21	OTOG (ENSOCUG00000006205) #22	MYOD1 (ENSOCUG00000021405)	KCNC1 (ENSOCUG00000025304)	SERGEF (ENSOCUG00000002409)	SAAL1 (ENSOCUG00000002418)	ENSOCUG00000002424	SAA4 (ENSOCUG00000024412)	ENSOCUG00000017620	ENSOCUG00000021891	HPS5 (ENSOCUG00000017624)	ENSOCUG00000017633	ENSOCUG00000015939	LDHC (ENSOCUG00000027929)	TSG101 (ENSOCUG00000013940)	UEVLD (ENSOCUG00000013952)	MISFA (ENSOCUG00000038035)
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.a	ENSGT00390000004737.b.a.p	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479
Myomorpha	ANCESTRAL SPECIES	13	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.a	ENSGT00390000004737.b.a.p	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479
Muroidea	ANCESTRAL SPECIES	65												ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000160074	ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00940000163348.e.c	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.a	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Cricetidae	ANCESTRAL SPECIES	28	ENSGT00940000160074	ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00940000163348.e.c	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.a
Cricetinae	ANCESTRAL SPECIES	33	ENSGT00940000160074	ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00940000163348.e.c	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	271	Kcnj14 (ENSCGRG00001011792)	Grwd1 (ENSCGRG00001010417)	Grin2d (ENSCGRG00001004821)	ENSCGRG00001020346	Syngr4 (ENSCGRG00001019310)	ENSCGRG00001016333	Tmem143 (ENSCGRG00001004118)	Emp3 (ENSCGRG00001019827)	ENSCGRG00001015977	Abcc6 (ENSCGRG00001019363)	Nomo1 (ENSCGRG00001022926)	ENSCGRG00001007718	Kcnj11 (ENSCGRG00001016383)	Abcc8 (ENSCGRG00001019046) #20	Ush1c (ENSCGRG00001019889) #21	Otog (ENSCGRG00001017020) #22	Myod1 (ENSCGRG00001012742)	Kcnc1 (ENSCGRG00001000468)	ENSCGRG00001023881	Tph1 (ENSCGRG00001020143)	ENSCGRG00001013232	Saa3 (ENSCGRG00001011262)
Golden Hamster	MODERN SPECIES	792	Cyth2 (ENSMAUG00000012287)	Kcnj14 (ENSMAUG00000013149)	Grwd1 (ENSMAUG00000008728)	Grin2d (ENSMAUG00000015271)	Kdelr1 (ENSMAUG00000017897)	Syngr4 (ENSMAUG00000019444)	Tmem143 (ENSMAUG00000021611)	Emp3 (ENSMAUG00000011967)	ENSMAUG00000017711	ENSMAUG00000019813	Abcc6 (ENSMAUG00000011133)	Nomo1 (ENSMAUG00000014334)	Kcnj11 (ENSMAUG00000006751)	Abcc8 (ENSMAUG00000007029) #20	Ush1c (ENSMAUG00000000973) #21	ENSMAUG00000018031 #22	Myod1 (ENSMAUG00000013881)	Kcnc1 (ENSMAUG00000020682)	Sergef (ENSMAUG00000010081)	Tph1 (ENSMAUG00000002337)	Saal1 (ENSMAUG00000003480)	Saa3 (ENSMAUG00000001692)
Cricetidae_B	ANCESTRAL SPECIES	31	ENSGT00940000160074	ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00940000163348.e.c	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.a
Northern American deer mouse	MODERN SPECIES		Kdelr1 (ENSPEMG00000015568)	Syngr4 (ENSPEMG00000011020)	Tmem143 (ENSPEMG00000015974)	Emp3 (ENSPEMG00000027338)	ENSPEMG00000014876	ENSPEMG00000024292	ENSPEMG00000030125	ENSPEMG00000031055	ENSPEMG00000031392	Abcc6 (ENSPEMG00000016077)	Nomo1 (ENSPEMG00000016802)	ENSPEMG00000028367	Kcnj11 (ENSPEMG00000006566)	Abcc8 (ENSPEMG00000003061) #20	Ush1c (ENSPEMG00000016758) #21	Otog (ENSPEMG00000011623) #22	Myod1 (ENSPEMG00000017570)	Kcnc1 (ENSPEMG00000014098)	Sergef (ENSPEMG00000008220)	Tph1 (ENSPEMG00000011560)	Saal1 (ENSPEMG00000003170)	ENSPEMG00000026619	ENSPEMG00000019341	ENSPEMG00000028115	ENSPEMG00000012474	Svip (ENSPEMG00000017315)	Gas2 (ENSPEMG00000006543)	Fancf (ENSPEMG00000026089)	Slc17a6 (ENSPEMG00000012568)	Ano5 (ENSPEMG00000011022)	Nell1 (ENSPEMG00000009575)
Prairie vole	MODERN SPECIES	97													Kcnj11 (ENSMOCG00000007862)	Abcc8 (ENSMOCG00000013816) #20	Ush1c (ENSMOCG00000015362) #21	Otog (ENSMOCG00000020280) #22	ENSMOCG00000002983	Kcnc1 (ENSMOCG00000020898)	Tph1 (ENSMOCG00000022944)	Saal1 (ENSMOCG00000019240)	ENSMOCG00000012708	Saa3 (ENSMOCG00000022825)	Saa4 (ENSMOCG00000003806)	ENSMOCG00000021805	ENSMOCG00000012779	Abcc6 (ENSMOCG00000016244)	ENSMOCG00000010788	Emp3 (ENSMOCG00000006718)	Tmem143 (ENSMOCG00000012780)	Syngr4 (ENSMOCG00000020597)	Kdelr1 (ENSMOCG00000000652)
Murinae	ANCESTRAL SPECIES		ENSGT00940000160074	ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00940000163348.e.c	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605	ENSGT00940000154133.A
Mus	ANCESTRAL SPECIES		ENSGT00940000154244.B	ENSGT00940000160074	ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.p	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000154244.B	ENSGT00940000160074	ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.p.c	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.e.f.b	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605
Mus_B	ANCESTRAL SPECIES		ENSGT00940000160074	ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00950000183364	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.p.c	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.e.f.b	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605
Mus_C	ANCESTRAL SPECIES	13	ENSGT00940000154244.B	ENSGT00940000160074	ENSGT01030000234586.B.a.b	ENSGT00550000075124	ENSGT00940000159109	ENSGT00390000004010.a.a	ENSGT00950000182935.A	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00940000153116.A	ENSGT00940000157145	ENSGT00390000000089	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.p.c	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.e.f.a.a.b	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605
Steppe mouse	MODERN SPECIES	3390						ENSMSIG00000026284	Syngr4 (ENSMSIG00000026311)	Tmem143 (ENSMSIG00000026331)	Emp3 (ENSMSIG00000026370)	Odad1 (ENSMSIG00000026391)	Abcc6 (ENSMSIG00000026407)	Nomo1 (ENSMSIG00000026440)	Kcnj11 (ENSMSIG00000026521)	Abcc8 (ENSMSIG00000026529) #20	Ush1c (ENSMSIG00000026733) #21	Otog (ENSMSIG00000027559) #22	Myod1 (ENSMSIG00000027645)	Kcnc1 (ENSMSIG00000027653)	Sergef (ENSMSIG00000027666)	Tph1 (ENSMSIG00000027705)	Saal1 (ENSMSIG00000027716)	Saa3 (ENSMSIG00000027731)	Saa4 (ENSMSIG00000027736)
spretus	MODERN SPECIES	16	MGP_SPRETEiJ_G0030842	Cyth2 (MGP_SPRETEiJ_G0030843)	Kcnj14 (MGP_SPRETEiJ_G0030844)	Grwd1 (MGP_SPRETEiJ_G0030845)	Grin2d (MGP_SPRETEiJ_G0030846)	Kdelr1 (MGP_SPRETEiJ_G0030847)	Syngr4 (MGP_SPRETEiJ_G0030848)	Tmem143 (MGP_SPRETEiJ_G0030849)	Emp3 (MGP_SPRETEiJ_G0030850)	MGP_SPRETEiJ_G0030851	Abcc6 (MGP_SPRETEiJ_G0030852)	Nomo1 (MGP_SPRETEiJ_G0030853)	Kcnj11 (MGP_SPRETEiJ_G0030854)	Abcc8 (MGP_SPRETEiJ_G0030855) #20	Ush1c (MGP_SPRETEiJ_G0030856) #21	Otog (MGP_SPRETEiJ_G0030857) #22	Myod1 (MGP_SPRETEiJ_G0030858)	Kcnc1 (MGP_SPRETEiJ_G0030859)	Sergef (MGP_SPRETEiJ_G0030860)	Tph1 (MGP_SPRETEiJ_G0030861)	Saal1 (MGP_SPRETEiJ_G0030862)	Saa3 (MGP_SPRETEiJ_G0030863)	Saa4 (MGP_SPRETEiJ_G0030864)	MGP_SPRETEiJ_G0030865	MGP_SPRETEiJ_G0030866	Hps5 (MGP_SPRETEiJ_G0030867)	Gtf2h1 (MGP_SPRETEiJ_G0030868)	Ldha (MGP_SPRETEiJ_G0030869)	Ldhc (MGP_SPRETEiJ_G0030870)	MGP_SPRETEiJ_G0030871	Uevld (MGP_SPRETEiJ_G0030872)
Mouse	MODERN SPECIES	16	Lmtk3 (ENSMUSG00000062044)	Cyth2 (ENSMUSG00000003269)	Kcnj14 (ENSMUSG00000058743)	Grwd1 (ENSMUSG00000053801)	Grin2d (ENSMUSG00000002771)	Kdelr1 (ENSMUSG00000002778)	Syngr4 (ENSMUSG00000040231)	Tmem143 (ENSMUSG00000002781)	Emp3 (ENSMUSG00000040212)	Odad1 (ENSMUSG00000040189)	Abcc6 (ENSMUSG00000030834)	Nomo1 (ENSMUSG00000030835)	Kcnj11 (ENSMUSG00000096146)	Abcc8 (ENSMUSG00000040136) #20	Ush1c (ENSMUSG00000030838) #21	Otog (ENSMUSG00000009487) #22	Myod1 (ENSMUSG00000009471)	Kcnc1 (ENSMUSG00000058975)	Sergef (ENSMUSG00000030839)	Tph1 (ENSMUSG00000040046)	Saal1 (ENSMUSG00000006763)	Saa3 (ENSMUSG00000040026)	Saa4 (ENSMUSG00000040017)	Saa1 (ENSMUSG00000074115)	Saa2 (ENSMUSG00000057465)	Hps5 (ENSMUSG00000014418)	Gtf2h1 (ENSMUSG00000006599)	Ldha (ENSMUSG00000063229)	Ldhc (ENSMUSG00000030851)	Tsg101 (ENSMUSG00000014402)	Uevld (ENSMUSG00000043262)
Ryukyu mouse	MODERN SPECIES	16	Lmtk3 (MGP_CAROLIEiJ_G0029744)	Cyth2 (MGP_CAROLIEiJ_G0029745)	Kcnj14 (MGP_CAROLIEiJ_G0029746)	Grwd1 (MGP_CAROLIEiJ_G0029747)	Grin2d (MGP_CAROLIEiJ_G0029748)	Kdelr1 (MGP_CAROLIEiJ_G0029749)	Syngr4 (MGP_CAROLIEiJ_G0029750)	Tmem143 (MGP_CAROLIEiJ_G0029751)	Emp3 (MGP_CAROLIEiJ_G0029752)	MGP_CAROLIEiJ_G0029753	Abcc6 (MGP_CAROLIEiJ_G0029754)	Nomo1 (MGP_CAROLIEiJ_G0029755)	Kcnj11 (MGP_CAROLIEiJ_G0029756)	Abcc8 (MGP_CAROLIEiJ_G0029757) #20	Ush1c (MGP_CAROLIEiJ_G0029758) #21	Otog (MGP_CAROLIEiJ_G0029759) #22	Myod1 (MGP_CAROLIEiJ_G0029760)	Kcnc1 (MGP_CAROLIEiJ_G0029761)	Sergef (MGP_CAROLIEiJ_G0029762)	Tph1 (MGP_CAROLIEiJ_G0029763)	Saal1 (MGP_CAROLIEiJ_G0029764)	Saa3 (MGP_CAROLIEiJ_G0029765)	Saa4 (MGP_CAROLIEiJ_G0029766)	MGP_CAROLIEiJ_G0029767	MGP_CAROLIEiJ_G0029768	Hps5 (MGP_CAROLIEiJ_G0029769)	Gtf2h1 (MGP_CAROLIEiJ_G0029770)	Ldha (MGP_CAROLIEiJ_G0029771)	MGP_CAROLIEiJ_G0029772	Tsg101 (MGP_CAROLIEiJ_G0029773)	Uevld (MGP_CAROLIEiJ_G0029774)
Shrew mouse	MODERN SPECIES		Lmtk3 (MGP_PahariEiJ_G0012969)	Cyth2 (MGP_PahariEiJ_G0012970)	Kcnj14 (MGP_PahariEiJ_G0012971)	Grwd1 (MGP_PahariEiJ_G0012972)	Grin2d (MGP_PahariEiJ_G0012973)	Kdelr1 (MGP_PahariEiJ_G0012974)	Syngr4 (MGP_PahariEiJ_G0012975)	Tmem143 (MGP_PahariEiJ_G0012976)	Emp3 (MGP_PahariEiJ_G0012977)	MGP_PahariEiJ_G0012978	Abcc6 (MGP_PahariEiJ_G0012979)	Nomo1 (MGP_PahariEiJ_G0012980)	Kcnj11 (MGP_PahariEiJ_G0012981)	Abcc8 (MGP_PahariEiJ_G0012982) #20	Ush1c (MGP_PahariEiJ_G0012983) #21	Otog (MGP_PahariEiJ_G0012984) #22	Myod1 (MGP_PahariEiJ_G0012985)	Kcnc1 (MGP_PahariEiJ_G0012986)	MGP_PahariEiJ_G0012987	Tph1 (MGP_PahariEiJ_G0012988)	Saal1 (MGP_PahariEiJ_G0012989)	Saa3 (MGP_PahariEiJ_G0012990)	Saa4 (MGP_PahariEiJ_G0012991)	MGP_PahariEiJ_G0012992	MGP_PahariEiJ_G0012993	Hps5 (MGP_PahariEiJ_G0012994)	Gtf2h1 (MGP_PahariEiJ_G0012995)	MGP_PahariEiJ_G0012996	Ldhc (MGP_PahariEiJ_G0012997)	Tsg101 (MGP_PahariEiJ_G0012998)	Uevld (MGP_PahariEiJ_G0012999)
Rat	MODERN SPECIES		Cyth2 (ENSRNOG00000021051)	Kcnj14 (ENSRNOG00000021056)	Grwd1 (ENSRNOG00000021058)	Grin2d (ENSRNOG00000021063)	Kdelr1 (ENSRNOG00000021082)	Syngr4 (ENSRNOG00000021093)	Tmem143 (ENSRNOG00000021096)	Emp3 (ENSRNOG00000021104)	Odad1 (ENSRNOG00000021109)	Abcc6 (ENSRNOG00000028781)	Nomo1 (ENSRNOG00000021118)	Ncr3lg1 (ENSRNOG00000070704)	Kcnj11 (ENSRNOG00000021128)	Abcc8 (ENSRNOG00000021130) #20	Ush1c (ENSRNOG00000021149) #21	Otog (ENSRNOG00000010983) #22	Myod1 (ENSRNOG00000011306)	Kcnc1 (ENSRNOG00000055401)	Sergef (ENSRNOG00000011488)	Tph1 (ENSRNOG00000011672)	Saal1 (ENSRNOG00000011895)	Saa4 (ENSRNOG00000055531)	Gtf2h1 (ENSRNOG00000012360)	Ldha (ENSRNOG00000013009)	Ldhc (ENSRNOG00000013103)	Tsg101 (ENSRNOG00000013381)	Uevld (ENSRNOG00000013624)	LOC100911574 (ENSRNOG00000066101)	Spty2d1 (ENSRNOG00000070392)	AABR07003273.1 (ENSRNOG00000050257)	Tmem86a (ENSRNOG00000013663)
Upper Galilee mountains blind mole rat	MODERN SPECIES	847													Kcnj11 (ENSNGAG00000006021)	Abcc8 (ENSNGAG00000014435) #20	Ush1c (ENSNGAG00000011687) #21	Otog (ENSNGAG00000018230) #22	Myod1 (ENSNGAG00000018134)	Kcnc1 (ENSNGAG00000010985)	Sergef (ENSNGAG00000011505)	Tph1 (ENSNGAG00000013495)	Saal1 (ENSNGAG00000014266)
Lesser Egyptian jerboa	MODERN SPECIES	43	ENSJJAG00000009221	Calca (ENSJJAG00000007984)	Calcb (ENSJJAG00000009837)	Insc (ENSJJAG00000008221)	Sox6 (ENSJJAG00000019247)	ENSJJAG00000018380	ENSJJAG00000007100	Plekha7 (ENSJJAG00000015908)	Rps13 (ENSJJAG00000014986)	ENSJJAG00000001032	Pik3c2a (ENSJJAG00000022972)	Nucb2 (ENSJJAG00000016858)	Kcnj11 (ENSJJAG00000011720)	Abcc8 (ENSJJAG00000019120) #20	Ush1c (ENSJJAG00000023737) #21	ENSJJAG00000020712 #22	Myod1 (ENSJJAG00000022220)	Kcnc1 (ENSJJAG00000020413)	Sergef (ENSJJAG00000006549)	Tph1 (ENSJJAG00000023739)	Saal1 (ENSJJAG00000019205)	Luzp2 (ENSJJAG00000012698)	ENSJJAG00000018291	Svip (ENSJJAG00000021446)	Gas2 (ENSJJAG00000015866)	Slc17a6 (ENSJJAG00000020770)	Ano5 (ENSJJAG00000015882)	Nell1 (ENSJJAG00000011975)	Slc6a5 (ENSJJAG00000015806)	Prmt3 (ENSJJAG00000012757)	Htatip2 (ENSJJAG00000010030)
Kangaroo rat	MODERN SPECIES	501	Copb1 (ENSDORG00000001806)	Psma1 (ENSDORG00000009494)	Pde3b (ENSDORG00000016029)	Cyp2r1 (ENSDORG00000001470)	ENSDORG00000007871	Calcb (ENSDORG00000015509)	Insc (ENSDORG00000015511)	Sox6 (ENSDORG00000013073)	1110004F10Rik (ENSDORG00000029283)	Plekha7 (ENSDORG00000013868)	Rps13 (ENSDORG00000002507)	Pik3c2a (ENSDORG00000002510)	Nucb2 (ENSDORG00000009599)	Abcc8 (ENSDORG00000009602) #20	Ush1c (ENSDORG00000009605) #21	Otog (ENSDORG00000009610) #22	Myod1 (ENSDORG00000027063)	Kcnc1 (ENSDORG00000013230)	Sergef (ENSDORG00000013234)	ENSDORG00000013235	Saal1 (ENSDORG00000013616)	ENSDORG00000012937	Hps5 (ENSDORG00000004137)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.f.a.a.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.f.a.a.a.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605
Marmotini	ANCESTRAL SPECIES	22	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.f.a.a.a.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605	ENSGT01040000242859
Marmotini_b	ANCESTRAL SPECIES	61	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT01090000260040.a.a.a.r	ENSGT00900000143156.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.l.f.a.a.a.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Arctic ground squirrel	MODERN SPECIES	206	PDE3B (ENSUPAG00010005774)	CYP2R1 (ENSUPAG00010005791)	CALCA (ENSUPAG00010005812)	CALCB (ENSUPAG00010005825)	INSC (ENSUPAG00010005831)	SOX6 (ENSUPAG00010005850)	C11orf58 (ENSUPAG00010006090)	PLEKHA7 (ENSUPAG00010006111)	RPS13 (ENSUPAG00010006654)	PIK3C2A (ENSUPAG00010006674)	ENSUPAG00010006717	NUCB2 (ENSUPAG00010006739)	KCNJ11 (ENSUPAG00010006778)	ABCC8 (ENSUPAG00010006784) #20	USH1C (ENSUPAG00010006868) #21	OTOG (ENSUPAG00010007511) #22	MYOD1 (ENSUPAG00010007585)	KCNC1 (ENSUPAG00010007591)	SERGEF (ENSUPAG00010007606)	TPH1 (ENSUPAG00010007637)	ENSUPAG00010007658	SAAL1 (ENSUPAG00010007663)	ENSUPAG00010007687	SAA4 (ENSUPAG00010007690)
Squirrel	MODERN SPECIES	128	CYP2R1 (ENSSTOG00000016403)	CALCA (ENSSTOG00000003844)	CALCB (ENSSTOG00000012372)	INSC (ENSSTOG00000012376)	SOX6 (ENSSTOG00000013609)	C11orf58 (ENSSTOG00000001419)	PLEKHA7 (ENSSTOG00000001423)	ENSSTOG00000008996	ENSSTOG00000031973	PIK3C2A (ENSSTOG00000009188)	ENSSTOG00000031872	NUCB2 (ENSSTOG00000001896)	KCNJ11 (ENSSTOG00000025616)	ABCC8 (ENSSTOG00000001904) #20	USH1C (ENSSTOG00000001933) #21	OTOG (ENSSTOG00000025595) #22	MYOD1 (ENSSTOG00000011556)	KCNC1 (ENSSTOG00000019519)	SERGEF (ENSSTOG00000003395)	TPH1 (ENSSTOG00000003404)	ENSSTOG00000031021	SAAL1 (ENSSTOG00000003419)	ENSSTOG00000022064	ENSSTOG00000000012	HPS5 (ENSSTOG00000000011)	GTF2H1 (ENSSTOG00000000013)	ENSSTOG00000033703	ENSSTOG00000000014	LDHC (ENSSTOG00000032003)	TSG101 (ENSSTOG00000024403)	UEVLD (ENSSTOG00000009271)
Alpin marmot	MODERN SPECIES	3	CYP2R1 (ENSMMMG00000003218)	CALCA (ENSMMMG00000003285)	CALCB (ENSMMMG00000003306)	INSC (ENSMMMG00000003331)	SOX6 (ENSMMMG00000003398)	C11orf58 (ENSMMMG00000003760)	PLEKHA7 (ENSMMMG00000003770)	ENSMMMG00000003997	PIK3C2A (ENSMMMG00000004019)	ENSMMMG00000004134	ENSMMMG00000004174	NUCB2 (ENSMMMG00000004191)	KCNJ11 (ENSMMMG00000004222)	ABCC8 (ENSMMMG00000004227) #20	USH1C (ENSMMMG00000004314) #21	ENSMMMG00000004715 #22	MYOD1 (ENSMMMG00000004739)	KCNC1 (ENSMMMG00000004744)	ENSMMMG00000004750	SERGEF (ENSMMMG00000004759)	TPH1 (ENSMMMG00000004814)	ENSMMMG00000004842	SAAL1 (ENSMMMG00000004860)	ENSMMMG00000004876	SAA4 (ENSMMMG00000004885)	HPS5 (ENSMMMG00000004900)	GTF2H1 (ENSMMMG00000005016)	ENSMMMG00000005208	ENSMMMG00000005255	TSG101 (ENSMMMG00000005296)	UEVLD (ENSMMMG00000005312)
Eurasian red squirrel	MODERN SPECIES	2	PDE3B (ENSSVLG00005009340)	CYP2R1 (ENSSVLG00005009273)	CALCA (ENSSVLG00005009221)	CALCB (ENSSVLG00005009182)	INSC (ENSSVLG00005008947)	SOX6 (ENSSVLG00005008583)	ENSSVLG00005008507	PLEKHA7 (ENSSVLG00005008253)	ENSSVLG00005008146	PIK3C2A (ENSSVLG00005007973)	ENSSVLG00005007915	NUCB2 (ENSSVLG00005007770)	KCNJ11 (ENSSVLG00005007700)	ABCC8 (ENSSVLG00005006593) #20	USH1C (ENSSVLG00005005925) #21	OTOG (ENSSVLG00005005330) #22	MYOD1 (ENSSVLG00005005222)	KCNC1 (ENSSVLG00005005188)	SERGEF (ENSSVLG00005005160)	TPH1 (ENSSVLG00005005094)	SAAL1 (ENSSVLG00005004983)	ENSSVLG00005004937	SAA4 (ENSSVLG00005004914)	ENSSVLG00005004896	ENSSVLG00005004866	ENSSVLG00005004846	HPS5 (ENSSVLG00005004813)	GTF2H1 (ENSSVLG00005016086)	ENSSVLG00005015754	LDHC (ENSSVLG00005015342)	TSG101 (ENSSVLG00005015216)
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.g	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.f.a.a.b.b.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605
Hystricomorpha_a	ANCESTRAL SPECIES	47	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267.p	ENSGT00940000156267.o	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.g	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.f.a.a.b.b.a.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605
Hystricomorpha_b	ANCESTRAL SPECIES	5	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267.p	ENSGT00940000156267.o	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000171813	ENSGT00390000000687.g	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00940000155818	ENSGT00940000170775	ENSGT00390000015066	ENSGT00940000153201.j.l.e	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00970000193605
Long-tailed chinchilla	MODERN SPECIES	121	PDE3B (ENSCLAG00000016912)	CYP2R1 (ENSCLAG00000016825)	ENSCLAG00000016987	ENSCLAG00000017178	INSC (ENSCLAG00000017184)	SOX6 (ENSCLAG00000016824)	ENSCLAG00000016704	C11orf58 (ENSCLAG00000016801)	PLEKHA7 (ENSCLAG00000017010)	ENSCLAG00000017194	PIK3C2A (ENSCLAG00000016983)	NUCB2 (ENSCLAG00000015316)	KCNJ11 (ENSCLAG00000018089)	ABCC8 (ENSCLAG00000017273) #20	USH1C (ENSCLAG00000017070) #21	OTOG (ENSCLAG00000017199) #22	MYOD1 (ENSCLAG00000016988)	KCNC1 (ENSCLAG00000017208)	SERGEF (ENSCLAG00000016819)	TPH1 (ENSCLAG00000017233)	SAAL1 (ENSCLAG00000017121)	ENSCLAG00000016741	SAA4 (ENSCLAG00000016977)	HPS5 (ENSCLAG00000017249)	GTF2H1 (ENSCLAG00000016966)	ENSCLAG00000017061	LDHC (ENSCLAG00000017086)	TSG101 (ENSCLAG00000017169)	UEVLD (ENSCLAG00000017090)	ENSCLAG00000017270	ENSCLAG00000017004
Degu	MODERN SPECIES	108	ENSODEG00000010275	ENSODEG00000019671	ENSODEG00000009712	INSC (ENSODEG00000008548)	SOX6 (ENSODEG00000008432)	ENSODEG00000009867	PLEKHA7 (ENSODEG00000010004)	ENSODEG00000009296	PIK3C2A (ENSODEG00000009662)	NUCB2 (ENSODEG00000009138)	ENSODEG00000008817	ENSODEG00000009435	KCNJ11 (ENSODEG00000019745)	ABCC8 (ENSODEG00000009121) #20	USH1C (ENSODEG00000009175) #21	OTOG (ENSODEG00000012735) #22	MYOD1 (ENSODEG00000009827)	KCNC1 (ENSODEG00000009078)	TPH1 (ENSODEG00000009357)	SAAL1 (ENSODEG00000013515)	ENSODEG00000009128	ENSODEG00000009541	ENSODEG00000009628	ENSODEG00000009884	ENSODEG00000010218	ENSODEG00000019665	ENSODEG00000009666	ENSODEG00000010324	ENSODEG00000010760	TSG101 (ENSODEG00000011046)	ENSODEG00000009385
Guinea pig	MODERN SPECIES	67	PSMA1 (ENSCPOG00000015226)	PDE3B (ENSCPOG00000014511)	CYP2R1 (ENSCPOG00000015305)	ENSCPOG00000009939	ENSCPOG00000034508	INSC (ENSCPOG00000009748)	SOX6 (ENSCPOG00000012090)	C11orf58 (ENSCPOG00000038571)	PLEKHA7 (ENSCPOG00000006974)	RPS13 (ENSCPOG00000000023)	PIK3C2A (ENSCPOG00000000024)	NUCB2 (ENSCPOG00000023342)	KCNJ11 (ENSCPOG00000004142)	ABCC8 (ENSCPOG00000001255) #20	USH1C (ENSCPOG00000001261) #21	OTOG (ENSCPOG00000002809) #22	MYOD1 (ENSCPOG00000021351)	KCNC1 (ENSCPOG00000011387)	SERGEF (ENSCPOG00000000907)	TPH1 (ENSCPOG00000000911)	SAAL1 (ENSCPOG00000006107)	ENSCPOG00000037249	PLEKHM1 (ENSCPOG00000011348)	ARHGAP27 (ENSCPOG00000033813)	MAP3K14 (ENSCPOG00000004839)	FMNL1 (ENSCPOG00000024625)	HEXIM1 (ENSCPOG00000007132)	ACBD4 (ENSCPOG00000034610)	PLCD3 (ENSCPOG00000007126)	NMT1 (ENSCPOG00000000854)	DCAKD (ENSCPOG00000040615)
Naked mole-rat female	MODERN SPECIES	24	CALCB (ENSHGLG00000007698)	INSC (ENSHGLG00000012231)	ENSHGLG00000032536	ENSHGLG00000014554	SOX6 (ENSHGLG00000013237)	ENSHGLG00000010951	PLEKHA7 (ENSHGLG00000004474)	ENSHGLG00000005727	PIK3C2A (ENSHGLG00000007454)	ENSHGLG00000037844	ENSHGLG00000004738	ENSHGLG00000036103	KCNJ11 (ENSHGLG00000037268)	ABCC8 (ENSHGLG00000008993) #20	USH1C (ENSHGLG00000010904) #21	ENSHGLG00000006891 #22	MYOD1 (ENSHGLG00000004984)	KCNC1 (ENSHGLG00000005420)	SERGEF (ENSHGLG00000005775)	TPH1 (ENSHGLG00000033079)	SAAL1 (ENSHGLG00000007181)	ENSHGLG00000039519	SAA4 (ENSHGLG00000042878)	HPS5 (ENSHGLG00000010391)	ENSHGLG00000015129	ENSHGLG00000015168	LDHC (ENSHGLG00000015435)	TSG101 (ENSHGLG00000013227)	UEVLD (ENSHGLG00000008452)	ENSHGLG00000046195	ENSHGLG00000048762
Tree shrew	MODERN SPECIES	4770																ENSTBEG00000008904 #22
Primates	ANCESTRAL SPECIES		ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.k.a.a.b	ENSGT01030000235549	ENSGT00940000153201.j.k.a.b	ENSGT00940000153201.j.k.a.a.a.a	ENSGT00940000161479
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.k.a.a.b	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01100000263734
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.k.a.a.b	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01100000263734
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b	ENSGT00940000161479	ENSGT00940000164064
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00390000000566.q.a.a	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b	ENSGT00940000161479
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00390000000566.q.a.a	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b	ENSGT00940000161479
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	20	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.w.a	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00390000000566.q.a.a	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00940000155182.b.e.b	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.a.b.db	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.w.a	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00390000000566.q.a.a	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00940000155182.b.e.b	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.a.b.cb.a	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b
Pan	ANCESTRAL SPECIES	1	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.w.a	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00390000000566.q.a.a	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00940000155182.b.e.b	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000001347.wb	ENSGT00390000004737.b.a.o.a.a.b.cb.a	ENSGT00940000155818	ENSGT00390000015066.c
Bonobo	MODERN SPECIES	2	CALCA (ENSPPAG00000040307)	CALCB (ENSPPAG00000039474)	INSC (ENSPPAG00000039229)	SOX6 (ENSPPAG00000037103)	ENSPPAG00000035221	C11orf58 (ENSPPAG00000035335)	PLEKHA7 (ENSPPAG00000041353)	ENSPPAG00000039874	PIK3C2A (ENSPPAG00000039156)	NUCB2 (ENSPPAG00000041653)	NCR3LG1 (ENSPPAG00000038825)	KCNJ11 (ENSPPAG00000016577)	ABCC8 (ENSPPAG00000026555) #20	ENSPPAG00000035879	USH1C (ENSPPAG00000028696) #21	OTOG (ENSPPAG00000027834) #22	MYOD1 (ENSPPAG00000036477)	KCNC1 (ENSPPAG00000006765)	ENSPPAG00000041411	TPH1 (ENSPPAG00000038830)	SAAL1 (ENSPPAG00000035982)	MRGPRX3 (ENSPPAG00000011150)	MRGPRX4 (ENSPPAG00000008504)	ENSPPAG00000039649	SAA4 (ENSPPAG00000036586)	ENSPPAG00000031094	ENSPPAG00000041426	SAA1 (ENSPPAG00000039165)	HPS5 (ENSPPAG00000039372)	GTF2H1 (ENSPPAG00000029804)	LDHA (ENSPPAG00000043477)
Chimpanzee	MODERN SPECIES	2	CALCA (ENSPTRG00000003389)	CALCB (ENSPTRG00000003390)	INSC (ENSPTRG00000003391)	SOX6 (ENSPTRG00000003393)	ENSPTRG00000043419	C11H11orf58 (ENSPTRG00000044196)	PLEKHA7 (ENSPTRG00000003396)	RPS13 (ENSPTRG00000044626)	PIK3C2A (ENSPTRG00000003399)	NUCB2 (ENSPTRG00000003400)	NCR3LG1 (ENSPTRG00000003401)	KCNJ11 (ENSPTRG00000028707)	ABCC8 (ENSPTRG00000003403) #20	ENSPTRG00000048594	USH1C (ENSPTRG00000003404) #21	OTOG (ENSPTRG00000003405) #22	MYOD1 (ENSPTRG00000003406)	KCNC1 (ENSPTRG00000003407)	SERGEF (ENSPTRG00000003408)	TPH1 (ENSPTRG00000003409)	SAAL1 (ENSPTRG00000003410)	MRGPRX3 (ENSPTRG00000052640)	MRGPRX4 (ENSPTRG00000045402)	ENSPTRG00000039747	ENSPTRG00000050361	SAA4 (ENSPTRG00000003415)	SAA2 (ENSPTRG00000003416)	ENSPTRG00000052833	SAA1 (ENSPTRG00000022627)	HPS5 (ENSPTRG00000003419)	GTF2H1 (ENSPTRG00000003420)
Human	MODERN SPECIES	2	PDE3B (ENSG00000152270)	CYP2R1 (ENSG00000186104)	CALCB (ENSG00000175868)	CALCA (ENSG00000110680)	INSC (ENSG00000188487)	SOX6 (ENSG00000110693)	C11orf58 (ENSG00000110696)	PLEKHA7 (ENSG00000166689)	RPS13 (ENSG00000110700)	PIK3C2A (ENSG00000011405)	NUCB2 (ENSG00000070081)	NCR3LG1 (ENSG00000188211)	KCNJ11 (ENSG00000187486)	ABCC8 (ENSG00000006071) #20	USH1C (ENSG00000006611) #21	OTOG (ENSG00000188162) #22	MYOD1 (ENSG00000129152)	KCNC1 (ENSG00000129159)	SERGEF (ENSG00000129158)	TPH1 (ENSG00000129167)	SAAL1 (ENSG00000166788)	MRGPRX3 (ENSG00000179826)	MRGPRX4 (ENSG00000179817)	SAA4 (ENSG00000148965)	SAA2-SAA4 (ENSG00000255071)	SAA2 (ENSG00000134339)	SAA1 (ENSG00000173432)	HPS5 (ENSG00000110756)	GTF2H1 (ENSG00000110768)	LDHA (ENSG00000134333)	LDHC (ENSG00000166796)
Gorilla	MODERN SPECIES	2	CYP2R1 (ENSGGOG00000004022)	CALCA (ENSGGOG00000014148)	CALCB (ENSGGOG00000000799)	INSC (ENSGGOG00000002992)	SOX6 (ENSGGOG00000010884)	ENSGGOG00000022363	PLEKHA7 (ENSGGOG00000006435)	RPS13 (ENSGGOG00000007450)	PIK3C2A (ENSGGOG00000011040)	NUCB2 (ENSGGOG00000005914)	NCR3LG1 (ENSGGOG00000022788)	KCNJ11 (ENSGGOG00000003700)	ABCC8 (ENSGGOG00000015972) #20	ENSGGOG00000039510	USH1C (ENSGGOG00000016001) #21	OTOG (ENSGGOG00000016024) #22	MYOD1 (ENSGGOG00000008222)	KCNC1 (ENSGGOG00000015717)	SERGEF (ENSGGOG00000000685)	TPH1 (ENSGGOG00000009041)	MRGPRX4 (ENSGGOG00000016538)	ENSGGOG00000039414	ENSGGOG00000025669	SAA4 (ENSGGOG00000003359)	SAA2 (ENSGGOG00000010301)	ENSGGOG00000010297	ENSGGOG00000006531	HPS5 (ENSGGOG00000010309)	GTF2H1 (ENSGGOG00000008405)	LDHA (ENSGGOG00000010350)	LDHC (ENSGGOG00000015884)
Orangutan	MODERN SPECIES	2	CYP2R1 (ENSPPYG00000003463)	ENSPPYG00000041260	CALCA (ENSPPYG00000025911)	CALCB (ENSPPYG00000003461)	INSC (ENSPPYG00000003460)	SOX6 (ENSPPYG00000003459)	C11H11orf58 (ENSPPYG00000003458)	PLEKHA7 (ENSPPYG00000003457)	ENSPPYG00000036022	PIK3C2A (ENSPPYG00000003455)	NUCB2 (ENSPPYG00000003454)	NCR3LG1 (ENSPPYG00000003453)	KCNJ11 (ENSPPYG00000003452)	ABCC8 (ENSPPYG00000004122) #20	USH1C (ENSPPYG00000003451) #21	OTOG (ENSPPYG00000003450) #22	MYOD1 (ENSPPYG00000003449)	KCNC1 (ENSPPYG00000003448)	SERGEF (ENSPPYG00000003446)	TPH1 (ENSPPYG00000003445)	SAAL1 (ENSPPYG00000039447)	MRGPRX3 (ENSPPYG00000038501)	ENSPPYG00000003442	MRGPRX4 (ENSPPYG00000039348)	SAA4 (ENSPPYG00000031722)	SAA2 (ENSPPYG00000003440)	ENSPPYG00000036972	HPS5 (ENSPPYG00000003439)	GTF2H1 (ENSPPYG00000003438)	LDHA (ENSPPYG00000003437)	LDHC (ENSPPYG00000003436)
Gibbon	MODERN SPECIES	5	INSC (ENSNLEG00000017712)	SOX6 (ENSNLEG00000017716)	ENSNLEG00000028745	ENSNLEG00000031503	C11orf58 (ENSNLEG00000029419)	PLEKHA7 (ENSNLEG00000017721)	RPS13 (ENSNLEG00000029985)	PIK3C2A (ENSNLEG00000017723)	ENSNLEG00000035283	NUCB2 (ENSNLEG00000017726)	NCR3LG1 (ENSNLEG00000034781)	KCNJ11 (ENSNLEG00000036200)	ABCC8 (ENSNLEG00000017729) #20	ENSNLEG00000034870	USH1C (ENSNLEG00000017735) #21	OTOG (ENSNLEG00000017737) #22	KCNC1 (ENSNLEG00000017741)	SERGEF (ENSNLEG00000017742)	TPH1 (ENSNLEG00000017744)	SAAL1 (ENSNLEG00000017747)	ENSNLEG00000017750	ENSNLEG00000028928	ENSNLEG00000017749	HPS5 (ENSNLEG00000017752)	GTF2H1 (ENSNLEG00000017760)	LDHA (ENSNLEG00000030432)	LDHC (ENSNLEG00000028060)	LDHAL6A (ENSNLEG00000017780)	TSG101 (ENSNLEG00000017783)	UEVLD (ENSNLEG00000017785)	ENSNLEG00000030850
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b.a.a.a.b	ENSGT00940000161479	ENSGT00940000164064
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b.a.a.a.b	ENSGT00940000161479	ENSGT00940000164064
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00910000148600	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b.a.a.a.b	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a
Cercopithecinae_b	ANCESTRAL SPECIES	27	ENSGT00910000148600	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.a	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b.x	ENSGT00390000004737.b.a.o.a.a.b.y	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b.a.a.a.b	ENSGT00940000161479	ENSGT00940000164064
Olive baboon	MODERN SPECIES	3	PDE3B (ENSPANG00000014364)	CYP2R1 (ENSPANG00000005224)	CALCA (ENSPANG00000038842)	INSC (ENSPANG00000010410)	SOX6 (ENSPANG00000025558)	ENSPANG00000013057	ENSPANG00000044173	C11orf58 (ENSPANG00000004515)	PLEKHA7 (ENSPANG00000018146)	ENSPANG00000033142	PIK3C2A (ENSPANG00000015538)	NUCB2 (ENSPANG00000002503)	KCNJ11 (ENSPANG00000016190)	ABCC8 (ENSPANG00000007182) #20	USH1C (ENSPANG00000020256) #21	OTOG (ENSPANG00000010378) #22	ENSPANG00000045614	MYOD1 (ENSPANG00000011946)	KCNC1 (ENSPANG00000015328)	SERGEF (ENSPANG00000025793)	TPH1 (ENSPANG00000007046)	SAAL1 (ENSPANG00000006539)	ENSPANG00000044809	ENSPANG00000040114	SAA4 (ENSPANG00000012057)	ENSPANG00000025709	HPS5 (ENSPANG00000000205)	GTF2H1 (ENSPANG00000002504)	LDHA (ENSPANG00000019081)	LDHC (ENSPANG00000025849)	ENSPANG00000047131
Cercopithecinae_d	ANCESTRAL SPECIES	99	ENSGT00910000148600	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b.x	ENSGT00390000004737.b.a.o.a.a.b.y	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b.a.a.a.a	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Drill	MODERN SPECIES	1100								C11orf58 (ENSMLEG00000006504)	PLEKHA7 (ENSMLEG00000038628)	RPS13 (ENSMLEG00000035302)	PIK3C2A (ENSMLEG00000039652)	NUCB2 (ENSMLEG00000032247)	KCNJ11 (ENSMLEG00000005939)	ABCC8 (ENSMLEG00000004767) #20	USH1C (ENSMLEG00000038490) #21	OTOG (ENSMLEG00000027393) #22	MYOD1 (ENSMLEG00000031495)	KCNC1 (ENSMLEG00000033839)	SERGEF (ENSMLEG00000042345)	TPH1 (ENSMLEG00000032014)	SAAL1 (ENSMLEG00000012869)	SAA4 (ENSMLEG00000032527)	ENSMLEG00000028895	ENSMLEG00000028344	HPS5 (ENSMLEG00000035748)	GTF2H1 (ENSMLEG00000042426)	ENSMLEG00000003699	LDHC (ENSMLEG00000028242)	LDHAL6A (ENSMLEG00000041786)	TSG101 (ENSMLEG00000036515)
Sooty mangabey	MODERN SPECIES	290									ENSCATG00000044705	PIK3C2A (ENSCATG00000010874)	NUCB2 (ENSCATG00000043820)	ENSCATG00000029541	KCNJ11 (ENSCATG00000022849)	ABCC8 (ENSCATG00000031694) #20	USH1C (ENSCATG00000025153) #21	OTOG (ENSCATG00000036498) #22	MYOD1 (ENSCATG00000031639)	KCNC1 (ENSCATG00000031951)	SERGEF (ENSCATG00000039738)	TPH1 (ENSCATG00000040162)	SAAL1 (ENSCATG00000028077)	SAA4 (ENSCATG00000033584)	ENSCATG00000043701	ENSCATG00000031928	HPS5 (ENSCATG00000035219)	GTF2H1 (ENSCATG00000035696)	ENSCATG00000039048	LDHAL6A (ENSCATG00000032545)	TSG101 (ENSCATG00000009882)	UEVLD (ENSCATG00000038967)	ENSCATG00000033511
Macaca	ANCESTRAL SPECIES	2	ENSGT00910000148600	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b.w	ENSGT00390000004737.b.a.o.a.a.b.v	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b.a.a.a.a	ENSGT00940000161479	ENSGT00940000164064
Pig-tailed macaque	MODERN SPECIES	131	ENSMNEG00000015626	CALCA (ENSMNEG00000041856)	CALCB (ENSMNEG00000033056)	INSC (ENSMNEG00000041648)	SOX6 (ENSMNEG00000015482)	ENSMNEG00000020819	C11orf58 (ENSMNEG00000039475)	PLEKHA7 (ENSMNEG00000042391)	ENSMNEG00000043614	PIK3C2A (ENSMNEG00000031943)	NUCB2 (ENSMNEG00000036376)	NCR3LG1 (ENSMNEG00000000053)	KCNJ11 (ENSMNEG00000023626)	ABCC8 (ENSMNEG00000018051) #20	USH1C (ENSMNEG00000012077) #21	OTOG (ENSMNEG00000040832) #22	MYOD1 (ENSMNEG00000044032)	KCNC1 (ENSMNEG00000029034)	SERGEF (ENSMNEG00000043939)	TPH1 (ENSMNEG00000028667)	SAAL1 (ENSMNEG00000021954)	ENSMNEG00000035570	SAA4 (ENSMNEG00000043404)	SAA2 (ENSMNEG00000041389)	HPS5 (ENSMNEG00000030883)	ENSMNEG00000042089	GTF2H1 (ENSMNEG00000036878)	ENSMNEG00000042413	LDHC (ENSMNEG00000033782)	ENSMNEG00000024949	LDHAL6A (ENSMNEG00000041126)
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00940000153272.a.b.o.b.a	ENSGT00980000199842.D.c.b	ENSGT00960000191653	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.s.a.a.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b.w	ENSGT00390000004737.b.a.o.a.a.b.v	ENSGT00940000155818	ENSGT00390000015066.c	ENSGT00940000153201.j.k.a.a.b.a.a.a.b.b	ENSGT00940000161479	ENSGT00940000164064
Rhesus	MODERN SPECIES	5	CYP2R1 (ENSMMUG00000000761)	CALCA (ENSMMUG00000062674)	CALCB (ENSMMUG00000020245)	INSC (ENSMMUG00000020246)	SOX6 (ENSMMUG00000002753)	ENSMMUG00000055212	ENSMMUG00000064582	C14H11orf58 (ENSMMUG00000017626)	ENSMMUG00000060216	PLEKHA7 (ENSMMUG00000017628)	RPS13 (ENSMMUG00000022547)	PIK3C2A (ENSMMUG00000022548)	NUCB2 (ENSMMUG00000005895)	ABCC8 (ENSMMUG00000023581) #20	USH1C (ENSMMUG00000023582) #21	OTOG (ENSMMUG00000023586) #22	MYOD1 (ENSMMUG00000006400)	KCNC1 (ENSMMUG00000006403)	SERGEF (ENSMMUG00000006405)	TPH1 (ENSMMUG00000006096)	SAAL1 (ENSMMUG00000014377)	MRGPRX3 (ENSMMUG00000060779)	ENSMMUG00000054997	MRGPRX4 (ENSMMUG00000055303)	SAA4 (ENSMMUG00000017960)	ENSMMUG00000011177	ENSMMUG00000060306	HPS5 (ENSMMUG00000017958)	GTF2H1 (ENSMMUG00000017959)	LDHA (ENSMMUG00000031024)	LDHC (ENSMMUG00000014615)
Crab-eating macaque	MODERN SPECIES	5	SOX6 (ENSMFAG00000026936)	ENSMFAG00000060735	ENSMFAG00000051873	ENSMFAG00000065082	ENSMFAG00000059859	ENSMFAG00000047457	C11orf58 (ENSMFAG00000041653)	PLEKHA7 (ENSMFAG00000000110)	ENSMFAG00000032124	PIK3C2A (ENSMFAG00000033659)	NUCB2 (ENSMFAG00000038074)	NCR3LG1 (ENSMFAG00000043862)	KCNJ11 (ENSMFAG00000010384)	ABCC8 (ENSMFAG00000035952) #20	USH1C (ENSMFAG00000000184) #21	OTOG (ENSMFAG00000001197) #22	MYOD1 (ENSMFAG00000039430)	KCNC1 (ENSMFAG00000002367)	SERGEF (ENSMFAG00000000777)	ENSMFAG00000065213	SAAL1 (ENSMFAG00000037334)	MRGPRX3 (ENSMFAG00000052090)	MRGPRX4 (ENSMFAG00000056317)	SAA4 (ENSMFAG00000038106)	SAA2 (ENSMFAG00000044536)	ENSMFAG00000025977	HPS5 (ENSMFAG00000044104)	GTF2H1 (ENSMFAG00000032995)	ENSMFAG00000054002	ENSMFAG00000027126	LDHC (ENSMFAG00000003940)
Vervet Monkey	MODERN SPECIES		CYP2R1 (ENSCSAG00000004727)	CALCA (ENSCSAG00000004733)	CALCB (ENSCSAG00000004739)	INSC (ENSCSAG00000004745)	SOX6 (ENSCSAG00000004751)	ENSCSAG00000019325	C11orf58 (ENSCSAG00000004755)	PLEKHA7 (ENSCSAG00000004758)	ENSCSAG00000004762	PIK3C2A (ENSCSAG00000004784)	NUCB2 (ENSCSAG00000004802)	NCR3LG1 (ENSCSAG00000004804)	KCNJ11 (ENSCSAG00000019324)	ABCC8 (ENSCSAG00000004854) #20	USH1C (ENSCSAG00000004871) #21	OTOG (ENSCSAG00000004909) #22	MYOD1 (ENSCSAG00000004934)	KCNC1 (ENSCSAG00000004936)	SERGEF (ENSCSAG00000004946)	TPH1 (ENSCSAG00000004950)	SAAL1 (ENSCSAG00000004954)	ENSCSAG00000019323	ENSCSAG00000004958	MRGPRX4 (ENSCSAG00000004961)	SAA4 (ENSCSAG00000004962)	ENSCSAG00000004965	ENSCSAG00000004969	HPS5 (ENSCSAG00000005000)	GTF2H1 (ENSCSAG00000005008)	ENSCSAG00000005035	LDHC (ENSCSAG00000005043)
Rhinopithecus	ANCESTRAL SPECIES	465												ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b
Golden snub-nosed monkey	MODERN SPECIES	1485												NUCB2 (ENSRROG00000041737)	KCNJ11 (ENSRROG00000027035)	ABCC8 (ENSRROG00000038913) #20	USH1C (ENSRROG00000043583) #21	OTOG (ENSRROG00000031218) #22	MYOD1 (ENSRROG00000038327)	KCNC1 (ENSRROG00000025905)	SERGEF (ENSRROG00000044406)	TPH1 (ENSRROG00000040674)	SAAL1 (ENSRROG00000035972)	ENSRROG00000042459	MRGPRX3 (ENSRROG00000022175)	ENSRROG00000030356	SAA4 (ENSRROG00000041678)	ENSRROG00000032522	HPS5 (ENSRROG00000045543)	GTF2H1 (ENSRROG00000044245)	ENSRROG00000034244	LDHC (ENSRROG00000025865)	ENSRROG00000029002
Black snub-nosed monkey	MODERN SPECIES	54												NUCB2 (ENSRBIG00000026384)	KCNJ11 (ENSRBIG00000017895)	ABCC8 (ENSRBIG00000028087) #20	USH1C (ENSRBIG00000032711) #21	OTOG (ENSRBIG00000038420) #22	MYOD1 (ENSRBIG00000031582)	KCNC1 (ENSRBIG00000023874)	SERGEF (ENSRBIG00000030422)	TPH1 (ENSRBIG00000008098)	SAAL1 (ENSRBIG00000031243)	ENSRBIG00000041399	MRGPRX3 (ENSRBIG00000044341)	SAA4 (ENSRBIG00000043432)
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.v	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.u	ENSGT00940000155817.a.a	ENSGT00440000038603.n	ENSGT00390000017491.s.a.a.e	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155622.g	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.k.a.a.a.a.f.a	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000154770.q.b
Cebidae	ANCESTRAL SPECIES		ENSGT00940000156267	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.v	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.u	ENSGT00940000155817.a.a	ENSGT00440000038603.n	ENSGT00390000017491.s.a.a.e	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155622.g	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.k.a.a.a.a.f.a	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000154770.q.b
Cebidae_a	ANCESTRAL SPECIES	10	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.v	ENSGT00940000153272.a.b.o.b.a	ENSGT00390000000687.u	ENSGT00940000155817.a.a	ENSGT00440000038603.n	ENSGT00390000017491.s.a.a.e	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155622.g	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.k.a.a.a.a.f.a.a	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000154770.q.b
Bolivian squirrel monkey	MODERN SPECIES	42	ENSSBOG00000020446	CYP2R1 (ENSSBOG00000025157)	ENSSBOG00000032369	CALCB (ENSSBOG00000034921)	INSC (ENSSBOG00000010393)	SOX6 (ENSSBOG00000032558)	C11orf58 (ENSSBOG00000024393)	PLEKHA7 (ENSSBOG00000035289)	ENSSBOG00000029329	RPS13 (ENSSBOG00000031967)	PIK3C2A (ENSSBOG00000020550)	NUCB2 (ENSSBOG00000022407)	KCNJ11 (ENSSBOG00000016143)	ABCC8 (ENSSBOG00000021007) #20	USH1C (ENSSBOG00000030041) #21	OTOG (ENSSBOG00000031057) #22	MYOD1 (ENSSBOG00000032168)	KCNC1 (ENSSBOG00000032934)	SERGEF (ENSSBOG00000021636)	TPH1 (ENSSBOG00000021704)	SAAL1 (ENSSBOG00000000873)	SAA4 (ENSSBOG00000035220)	ENSSBOG00000025130	HPS5 (ENSSBOG00000034848)	GTF2H1 (ENSSBOG00000035194)	ENSSBOG00000023979	LDHC (ENSSBOG00000029573)	LDHAL6A (ENSSBOG00000032789)	TSG101 (ENSSBOG00000032898)	ENSSBOG00000016234	ENSSBOG00000023915
Capuchin	MODERN SPECIES	39	CYP2R1 (ENSCCAG00000020089)	ENSCCAG00000022131	CALCB (ENSCCAG00000036279)	INSC (ENSCCAG00000028591)	SOX6 (ENSCCAG00000034832)	ENSCCAG00000035901	ENSCCAG00000037894	PLEKHA7 (ENSCCAG00000030437)	ENSCCAG00000031641	RPS13 (ENSCCAG00000022959)	PIK3C2A (ENSCCAG00000034614)	NUCB2 (ENSCCAG00000029832)	KCNJ11 (ENSCCAG00000019232)	ABCC8 (ENSCCAG00000029653) #20	USH1C (ENSCCAG00000030798) #21	OTOG (ENSCCAG00000027583) #22	MYOD1 (ENSCCAG00000036433)	KCNC1 (ENSCCAG00000033090)	SERGEF (ENSCCAG00000037352)	TPH1 (ENSCCAG00000023915)	SAAL1 (ENSCCAG00000025101)	ENSCCAG00000022385	SAA4 (ENSCCAG00000025050)	ENSCCAG00000024041	ENSCCAG00000024577	HPS5 (ENSCCAG00000032081)	GTF2H1 (ENSCCAG00000028407)	ENSCCAG00000028937	ENSCCAG00000029060	LDHC (ENSCCAG00000031200)	LDHAL6A (ENSCCAG00000031041)
Marmoset	MODERN SPECIES	2	ENSCJAG00000009757	CALCB (ENSCJAG00000072821)	INSC (ENSCJAG00000009705)	ENSCJAG00000084026	SOX6 (ENSCJAG00000009643)	ENSCJAG00000080150	C11orf58 (ENSCJAG00000041748)	PLEKHA7 (ENSCJAG00000009589)	ENSCJAG00000080001	ENSCJAG00000009564	PIK3C2A (ENSCJAG00000009472)	NUCB2 (ENSCJAG00000009422)	KCNJ11 (ENSCJAG00000048022)	ABCC8 (ENSCJAG00000009368) #20	USH1C (ENSCJAG00000009310) #21	OTOG (ENSCJAG00000009263) #22	MYOD1 (ENSCJAG00000009258)	KCNC1 (ENSCJAG00000007290)	ENSCJAG00000007283	ENSCJAG00000043934	SAA4 (ENSCJAG00000007213)	ENSCJAG00000081433	ENSCJAG00000007204	HPS5 (ENSCJAG00000007185)	ENSCJAG00000074922	GTF2H1 (ENSCJAG00000007129)	LDHC (ENSCJAG00000007081)	ENSCJAG00000080933	LDHAL6A (ENSCJAG00000007067)	TSG101 (ENSCJAG00000086769)	UEVLD (ENSCJAG00000007006)
Mas night monkey	MODERN SPECIES	830	CALCB (ENSANAG00000026224)	INSC (ENSANAG00000024858)	ENSANAG00000028387	SOX6 (ENSANAG00000029702)	C11orf58 (ENSANAG00000027455)	PLEKHA7 (ENSANAG00000015437)	ENSANAG00000028185	RPS13 (ENSANAG00000026703)	ENSANAG00000029343	PIK3C2A (ENSANAG00000036198)	NUCB2 (ENSANAG00000033132)	NCR3LG1 (ENSANAG00000021049)	KCNJ11 (ENSANAG00000017323)	ABCC8 (ENSANAG00000034619) #20	USH1C (ENSANAG00000033372) #21	OTOG (ENSANAG00000035931) #22	MYOD1 (ENSANAG00000032905)	KCNC1 (ENSANAG00000034875)	SERGEF (ENSANAG00000036496)	TPH1 (ENSANAG00000018818)	SAAL1 (ENSANAG00000036857)	ENSANAG00000021597	SAA4 (ENSANAG00000020818)	ENSANAG00000021057	HPS5 (ENSANAG00000018225)	GTF2H1 (ENSANAG00000023697)	ENSANAG00000037705	LDHC (ENSANAG00000037671)	LDHAL6A (ENSANAG00000023203)	TSG101 (ENSANAG00000019676)	ENSANAG00000022035
Tarsier	MODERN SPECIES	6876											NUCB2 (ENSTSYG00000004815)	ENSTSYG00000012549	KCNJ11 (ENSTSYG00000036305)	ABCC8 (ENSTSYG00000005463) #20	USH1C (ENSTSYG00000002114) #21	OTOG (ENSTSYG00000011787) #22
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j.k.a.b	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a
Lemuriformes	ANCESTRAL SPECIES	16	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j.k.a.b	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a
Mouse lemur	MODERN SPECIES	27	PDE3B (ENSMICG00000037786)	CYP2R1 (ENSMICG00000031499)	CALCA (ENSMICG00000036545)	CALCB (ENSMICG00000044384)	INSC (ENSMICG00000008907)	SOX6 (ENSMICG00000027413)	ENSMICG00000027883	PLEKHA7 (ENSMICG00000003710)	ENSMICG00000031241	PIK3C2A (ENSMICG00000003718)	ENSMICG00000037789	NUCB2 (ENSMICG00000005512)	KCNJ11 (ENSMICG00000005520)	ABCC8 (ENSMICG00000005522) #20	USH1C (ENSMICG00000005547) #21	OTOG (ENSMICG00000005555) #22	MYOD1 (ENSMICG00000005566)	KCNC1 (ENSMICG00000005569)	SERGEF (ENSMICG00000005579)	TPH1 (ENSMICG00000005586)	SAAL1 (ENSMICG00000005592)	ENSMICG00000042509	ENSMICG00000042946	ENSMICG00000005619	SAA4 (ENSMICG00000036934)	HPS5 (ENSMICG00000005626)	GTF2H1 (ENSMICG00000009467)	ENSMICG00000036424	LDHA (ENSMICG00000029727)	LDHC (ENSMICG00000009475)	LDHAL6A (ENSMICG00000008876)
Lemuriformes_a	ANCESTRAL SPECIES	24	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.k.a.b	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01100000263734
Coquerels sifaka	MODERN SPECIES	591	PDE3B (ENSPCOG00000022666)	CYP2R1 (ENSPCOG00000017738)	ENSPCOG00000014163	CALCB (ENSPCOG00000025246)	INSC (ENSPCOG00000024807)	SOX6 (ENSPCOG00000008289)	C11orf58 (ENSPCOG00000012109)	ENSPCOG00000016080	PLEKHA7 (ENSPCOG00000020850)	ENSPCOG00000024432	PIK3C2A (ENSPCOG00000009463)	ENSPCOG00000015410	KCNJ11 (ENSPCOG00000009073)	ABCC8 (ENSPCOG00000018480) #20	USH1C (ENSPCOG00000024567) #21	OTOG (ENSPCOG00000023596) #22	MYOD1 (ENSPCOG00000028149)	KCNC1 (ENSPCOG00000028118)	SERGEF (ENSPCOG00000015228)	TPH1 (ENSPCOG00000022787)	SAAL1 (ENSPCOG00000013362)	ENSPCOG00000023938	ENSPCOG00000008984	SAA4 (ENSPCOG00000014650)	HPS5 (ENSPCOG00000018482)	GTF2H1 (ENSPCOG00000016794)	ENSPCOG00000025606	ENSPCOG00000022047	TSG101 (ENSPCOG00000022058)	UEVLD (ENSPCOG00000016777)	ENSPCOG00000015051
Greater bamboo lemur	MODERN SPECIES	708					CALCB (ENSPSMG00000008444)	INSC (ENSPSMG00000008493)	SOX6 (ENSPSMG00000008573)	ENSPSMG00000008607	PLEKHA7 (ENSPSMG00000008661)	ENSPSMG00000008669	PIK3C2A (ENSPSMG00000008738)	NUCB2 (ENSPSMG00000008836)	KCNJ11 (ENSPSMG00000008899)	ABCC8 (ENSPSMG00000009601) #20	USH1C (ENSPSMG00000010622) #21	OTOG (ENSPSMG00000010669) #22	MYOD1 (ENSPSMG00000010680)	KCNC1 (ENSPSMG00000010686)	SERGEF (ENSPSMG00000010715)	TPH1 (ENSPSMG00000010741)	SAAL1 (ENSPSMG00000010764)	ENSPSMG00000010777
Bushbaby	MODERN SPECIES	116	CYP2R1 (ENSOGAG00000006278)	ENSOGAG00000017129	ENSOGAG00000009052	INSC (ENSOGAG00000000628)	SOX6 (ENSOGAG00000005358)	C11orf58 (ENSOGAG00000025335)	PLEKHA7 (ENSOGAG00000013719)	RPS13 (ENSOGAG00000002128)	PIK3C2A (ENSOGAG00000002129)	ENSOGAG00000028675	NUCB2 (ENSOGAG00000006094)	ENSOGAG00000032142	KCNJ11 (ENSOGAG00000029803)	ABCC8 (ENSOGAG00000006103) #20	USH1C (ENSOGAG00000006113) #21	OTOG (ENSOGAG00000033908) #22	MYOD1 (ENSOGAG00000029784)	KCNC1 (ENSOGAG00000011185)	SERGEF (ENSOGAG00000011195)	TPH1 (ENSOGAG00000011200)	SAAL1 (ENSOGAG00000011202)	ENSOGAG00000029424	ENSOGAG00000027885	ENSOGAG00000011206	HPS5 (ENSOGAG00000011208)	GTF2H1 (ENSOGAG00000000710)	LDHC (ENSOGAG00000003725)	LDHAL6A (ENSOGAG00000009261)	TSG101 (ENSOGAG00000009264)	ENSOGAG00000009268	SPTY2D1 (ENSOGAG00000031814)
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000156267	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000175801	ENSGT00390000017491.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064
Eulipotyphla	ANCESTRAL SPECIES	266													ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22
Hedgehog	MODERN SPECIES	7880													KCNJ11 (ENSEEUG00000013033)	ABCC8 (ENSEEUG00000013037) #20	USH1C (ENSEEUG00000013184) #21	ENSEEUG00000013347 #22
Common shrew	MODERN SPECIES	6237																ENSSARG00000000295 #22
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000162876	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000175801	ENSGT00390000017491.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064
Suina	ANCESTRAL SPECIES	34	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000166205.a.a	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084
Pig	MODERN SPECIES	10	ENSSSCG00000013390	ENSSSCG00000035649	ENSSSCG00000013387	ENSSSCG00000013386	ENSSSCG00000026512	INSC (ENSSSCG00000013385)	SOX6 (ENSSSCG00000034191)	C11orf58 (ENSSSCG00000040570)	PLEKHA7 (ENSSSCG00000013382)	RPS13 (ENSSSCG00000013381)	PIK3C2A (ENSSSCG00000025406)	ENSSSCG00000013380	KCNJ11 (ENSSSCG00000042162)	ABCC8 (ENSSSCG00000013378) #20	USH1C (ENSSSCG00000013377) #21	OTOG (ENSSSCG00000013376) #22	MYOD1 (ENSSSCG00000013375)	KCNC1 (ENSSSCG00000013374)	SERGEF (ENSSSCG00000042767)	TPH1 (ENSSSCG00000054840)	SAAL1 (ENSSSCG00000035393)	ENSSSCG00000037358	ENSSSCG00000046269	ENSSSCG00000052907	ENSSSCG00000013369	ENSSSCG00000045256	GTF2H1 (ENSSSCG00000013367)	LDHA (ENSSSCG00000013366)	LDHC (ENSSSCG00000013363)	ENSSSCG00000041063	UEVLD (ENSSSCG00000013362)
Chacoan peccary	MODERN SPECIES	919	ENSCWAG00000019380	ENSCWAG00000019355	ENSCWAG00000019335	ENSCWAG00000019318	INSC (ENSCWAG00000019215)	SOX6 (ENSCWAG00000018979)	C11orf58 (ENSCWAG00000018946)	PLEKHA7 (ENSCWAG00000018738)	ENSCWAG00000018676	PIK3C2A (ENSCWAG00000018580)	NUCB2 (ENSCWAG00000018398)	ENSCWAG00000018371	KCNJ11 (ENSCWAG00000018360)	ABCC8 (ENSCWAG00000016534) #20	USH1C (ENSCWAG00000016103) #21	OTOG (ENSCWAG00000015797) #22	MYOD1 (ENSCWAG00000015755)	KCNC1 (ENSCWAG00000015694)	SERGEF (ENSCWAG00000015651)	TPH1 (ENSCWAG00000015561)	SAAL1 (ENSCWAG00000015499)	ENSCWAG00000015451	SAA4 (ENSCWAG00000015410)	HPS5 (ENSCWAG00000015353)	GTF2H1 (ENSCWAG00000015209)	ENSCWAG00000015174	ENSCWAG00000015145	ENSCWAG00000015128	LDHC (ENSCWAG00000014623)	TSG101 (ENSCWAG00000014545)	ENSCWAG00000014527
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00940000166205.b	ENSGT00940000166205.a	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.u	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000154133.A
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000167380	ENSGT00940000167952	ENSGT00940000156267.eb	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.r	ENSGT00940000157813	ENSGT00940000157251.hb	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.u	ENSGT00940000161479	ENSGT00940000153903.a.a.m.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000164956
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000156267.eb	ENSGT00940000167952	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.r	ENSGT00940000157813	ENSGT00940000157251.hb	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.u	ENSGT00940000161479	ENSGT00940000153903.a.a.m.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000154133.A
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000156267.eb	ENSGT00940000167952	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.r	ENSGT00940000157813	ENSGT00940000157251.hb	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.u	ENSGT00940000161479	ENSGT00940000153903.a.a.m.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000154133.A
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000156267.eb	ENSGT00940000167952	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.r	ENSGT00940000157813	ENSGT00940000157251.hb	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.u	ENSGT00940000161479	ENSGT00940000153903.a.a.m.a	ENSGT00940000153903.a.b.b	ENSGT00390000012981.rb.a.a	ENSGT01050000245084
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000166205.b	ENSGT00940000167380	ENSGT00390000001511	ENSGT00390000018086.y.b.b	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.r	ENSGT00940000157813	ENSGT00940000157251.hb	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.u	ENSGT00940000161479	ENSGT00940000153903.a.a.m.a	ENSGT00940000153903.a.b.b	ENSGT00390000012981.rb.a.a	ENSGT01050000245084	ENSGT00940000154133.A
Narwhal	MODERN SPECIES	314	ENSMMNG00015021124	ENSMMNG00015021136	INSC (ENSMMNG00015021164)	ENSMMNG00015021215	SOX6 (ENSMMNG00015021242)	C11orf58 (ENSMMNG00015021280)	PLEKHA7 (ENSMMNG00015021305)	RPS13 (ENSMMNG00015021335)	PIK3C2A (ENSMMNG00015021358)	ENSMMNG00015021368	NUCB2 (ENSMMNG00015021400)	ENSMMNG00015021437	KCNJ11 (ENSMMNG00015021442)	ABCC8 (ENSMMNG00015021473) #20	USH1C (ENSMMNG00015021503) #21	OTOG (ENSMMNG00015021531) #22	MYOD1 (ENSMMNG00015021563)	KCNC1 (ENSMMNG00015021571)	SERGEF (ENSMMNG00015021595)	TPH1 (ENSMMNG00015021621)	SAAL1 (ENSMMNG00015021635)	ENSMMNG00015021647	ENSMMNG00015021651	ENSMMNG00015021655	HPS5 (ENSMMNG00015021667)	GTF2H1 (ENSMMNG00015021680)	ENSMMNG00015021692	ENSMMNG00015021700	ENSMMNG00015021702	ENSMMNG00015021710	TSG101 (ENSMMNG00015021720)
Beluga whale	MODERN SPECIES	32	ENSDLEG00000005645	ENSDLEG00000005632	INSC (ENSDLEG00000005606)	ENSDLEG00000005557	SOX6 (ENSDLEG00000005509)	CUNH11orf58 (ENSDLEG00000005498)	PLEKHA7 (ENSDLEG00000005386)	RPS13 (ENSDLEG00000005358)	ENSDLEG00000020962	PIK3C2A (ENSDLEG00000020912)	NUCB2 (ENSDLEG00000020854)	ENSDLEG00000020840	KCNJ11 (ENSDLEG00000020835)	ABCC8 (ENSDLEG00000016659) #20	USH1C (ENSDLEG00000016116) #21	OTOG (ENSDLEG00000015797) #22	MYOD1 (ENSDLEG00000015755)	KCNC1 (ENSDLEG00000015743)	SERGEF (ENSDLEG00000015727)	TPH1 (ENSDLEG00000015701)	SAAL1 (ENSDLEG00000015675)	ENSDLEG00000015657	HPS5 (ENSDLEG00000015626)	GTF2H1 (ENSDLEG00000015605)	ENSDLEG00000015586	ENSDLEG00000015577	TSG101 (ENSDLEG00000015564)	ENSDLEG00000015553	UEVLD (ENSDLEG00000015524)	MISFA (ENSDLEG00000015517)	ENSDLEG00000015507
Vaquita	MODERN SPECIES	19	ENSPSNG00000005789	ENSPSNG00000005826	ENSPSNG00000005847	ENSPSNG00000005882	INSC (ENSPSNG00000005971)	SOX6 (ENSPSNG00000006212)	C11orf58 (ENSPSNG00000006414)	PLEKHA7 (ENSPSNG00000006504)	PIK3C2A (ENSPSNG00000006633)	ENSPSNG00000006740	NUCB2 (ENSPSNG00000006795)	ENSPSNG00000006848	KCNJ11 (ENSPSNG00000006886)	ABCC8 (ENSPSNG00000007231) #20	USH1C (ENSPSNG00000008836) #21	OTOG (ENSPSNG00000009133) #22	MYOD1 (ENSPSNG00000009194)	KCNC1 (ENSPSNG00000009240)	SERGEF (ENSPSNG00000009362)	TPH1 (ENSPSNG00000009426)	SAAL1 (ENSPSNG00000009495)	ENSPSNG00000009564	ENSPSNG00000009625	ENSPSNG00000009709	ENSPSNG00000009755	ENSPSNG00000009837	HPS5 (ENSPSNG00000009992)	GTF2H1 (ENSPSNG00000010188)	ENSPSNG00000010281	ENSPSNG00000010383	ENSPSNG00000010416
Dolphin	MODERN SPECIES	1501											NUCB2 (ENSTTRG00000015074)	ENSTTRG00000015079	KCNJ11 (ENSTTRG00000015082)	ABCC8 (ENSTTRG00000015084) #20	USH1C (ENSTTRG00000015089) #21	OTOG (ENSTTRG00000015094) #22
Sperm whale	MODERN SPECIES	7	ENSPCTG00005012995	INSC (ENSPCTG00005013109)	SOX6 (ENSPCTG00005013480)	C16H11orf58 (ENSPCTG00005013885)	ENSPCTG00005013965	PLEKHA7 (ENSPCTG00005014003)	RPS13 (ENSPCTG00005014477)	ENSPCTG00005014567	PIK3C2A (ENSPCTG00005014624)	ENSPCTG00005015020	NUCB2 (ENSPCTG00005004244)	ENSPCTG00005004506	KCNJ11 (ENSPCTG00005004532)	ABCC8 (ENSPCTG00005004712) #20	USH1C (ENSPCTG00005006223) #21	OTOG (ENSPCTG00005006334) #22	MYOD1 (ENSPCTG00005006484)	KCNC1 (ENSPCTG00005006503)	SERGEF (ENSPCTG00005006546)	TPH1 (ENSPCTG00005006667)	SAAL1 (ENSPCTG00005006752)	ENSPCTG00005006800	ENSPCTG00005006824	ENSPCTG00005006852	HPS5 (ENSPCTG00005006903)	GTF2H1 (ENSPCTG00005007039)	ENSPCTG00005007257	LDHA (ENSPCTG00005007271)	LDHC (ENSPCTG00005007321)	ENSPCTG00005007383	TSG101 (ENSPCTG00005007406)
Blue whale	MODERN SPECIES	19	ENSBMSG00010011256	ENSBMSG00010011268	INSC (ENSBMSG00010011315)	SOX6 (ENSBMSG00010011468)	ENSBMSG00010011543	C11orf58 (ENSBMSG00010011553)	PLEKHA7 (ENSBMSG00010011591)	ENSBMSG00010011692	PIK3C2A (ENSBMSG00010011707)	ENSBMSG00010011741	NUCB2 (ENSBMSG00010011776)	ENSBMSG00010011920	KCNJ11 (ENSBMSG00010011930)	ABCC8 (ENSBMSG00010012014) #20	USH1C (ENSBMSG00010012539) #21	OTOG (ENSBMSG00010012712) #22	MYOD1 (ENSBMSG00010012778)	KCNC1 (ENSBMSG00010012786)	SERGEF (ENSBMSG00010012809)	ENSBMSG00010012824	TPH1 (ENSBMSG00010012841)	SAAL1 (ENSBMSG00010012874)	ENSBMSG00010009467	ENSBMSG00010009474	ENSBMSG00010009483	HPS5 (ENSBMSG00010009507)	GTF2H1 (ENSBMSG00010009536)	ENSBMSG00010009579	LDHC (ENSBMSG00010009652)	ENSBMSG00010009854	ENSBMSG00010009877
Pecora	ANCESTRAL SPECIES	7	ENSGT00940000166205.b	ENSGT00940000166205.a	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097
Percora_a	ANCESTRAL SPECIES	6	ENSGT00940000166205.b	ENSGT00940000166205.a	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097
Bovidae	ANCESTRAL SPECIES	6	ENSGT00940000166205.b	ENSGT00940000166205.a	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097
Caprinae	ANCESTRAL SPECIES	6	ENSGT00940000166205.b	ENSGT00940000166205.a	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097	ENSGT01030000234563.a.b
Rambouillet Sheep	MODERN SPECIES	6	ENSOARG00020007716	CALCA (ENSOARG00020007665)	INSC (ENSOARG00020007458)	SOX6 (ENSOARG00020007177)	HSP10 (ENSOARG00020007118)	C11orf58 (ENSOARG00020007043)	PLEKHA7 (ENSOARG00020006298)	ENSOARG00020006224	PIK3C2A (ENSOARG00020005921)	ENSOARG00020005854	NUCB2 (ENSOARG00020005797)	ENSOARG00020005772	KCNJ11 (ENSOARG00020005759)	ABCC8 (ENSOARG00020004289) #20	USH1C (ENSOARG00020004095) #21	OTOG (ENSOARG00020003321) #22	MYOD1 (ENSOARG00020003202)	KCNC1 (ENSOARG00020023195)	SERGEF (ENSOARG00020023024)	TPH1 (ENSOARG00020022961)	SAAL1 (ENSOARG00020022824)	ZNF202 (ENSOARG00020022786)	SCN3B (ENSOARG00020022761)	GRAMD1B (ENSOARG00020020792)	CLMP (ENSOARG00020020617)	HSPA8 (ENSOARG00020020443)	BSX (ENSOARG00020020411)	JHY (ENSOARG00020020294)	CRTAM (ENSOARG00020020211)	UBASH3B (ENSOARG00020020117)	ENSOARG00020020082
Goat	MODERN SPECIES	6	ENSCHIG00000016702	ENSCHIG00000017738	ENSCHIG00000021622	INSC (ENSCHIG00000006694)	SOX6 (ENSCHIG00000021925)	C11orf58 (ENSCHIG00000019685)	PLEKHA7 (ENSCHIG00000013421)	ENSCHIG00000003111	ENSCHIG00000023276	PIK3C2A (ENSCHIG00000015119)	ENSCHIG00000010858	NUCB2 (ENSCHIG00000025278)	KCNJ11 (ENSCHIG00000009617)	ABCC8 (ENSCHIG00000014117) #20	USH1C (ENSCHIG00000006681) #21	OTOG (ENSCHIG00000002155) #22	MYOD1 (ENSCHIG00000009793)	KCNC1 (ENSCHIG00000010620)	SERGEF (ENSCHIG00000016321)	TPH1 (ENSCHIG00000022168)	SAAL1 (ENSCHIG00000014782)	ZNF202 (ENSCHIG00000026799)	SCN3B (ENSCHIG00000006052)	GRAMD1B (ENSCHIG00000012464)	CLMP (ENSCHIG00000010482)	HSPA8 (ENSCHIG00000017000)	BSX (ENSCHIG00000002885)	JHY (ENSCHIG00000006072)	ENSCHIG00000017759	CRTAM (ENSCHIG00000016236)	UBASH3B (ENSCHIG00000027002)
Bovinae	ANCESTRAL SPECIES	21	ENSGT00940000166205.a	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.s.b	ENSGT00940000157813	ENSGT00390000014320.l	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097
Bos	ANCESTRAL SPECIES	20	ENSGT00940000166205.a.c.a	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.s.b	ENSGT00940000157813	ENSGT00390000014320.l	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097
Bos_a	ANCESTRAL SPECIES	15	ENSGT00940000166205.a.c.b	ENSGT00390000001511	ENSGT00940000156267	ENSGT00940000167380	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.s.b	ENSGT00940000157813	ENSGT00390000014320.l	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097
Domestic yak	MODERN SPECIES	4	ENSBGRG00000008265	ENSBGRG00000008327	INSC (ENSBGRG00000008459)	ENSBGRG00000008740	SOX6 (ENSBGRG00000008760)	C11orf58 (ENSBGRG00000009025)	PLEKHA7 (ENSBGRG00000009104)	ENSBGRG00000009189	PIK3C2A (ENSBGRG00000009254)	ENSBGRG00000009346	NUCB2 (ENSBGRG00000009502)	ENSBGRG00000009664	KCNJ11 (ENSBGRG00000009694)	ABCC8 (ENSBGRG00000009791) #20	USH1C (ENSBGRG00000010311) #21	OTOG (ENSBGRG00000011342) #22	KCNC1 (ENSBGRG00000012223)	SERGEF (ENSBGRG00000012334)	TPH1 (ENSBGRG00000012473)	SAAL1 (ENSBGRG00000012533)	ENSBGRG00000012876	ZNF202 (ENSBGRG00000012911)	SCN3B (ENSBGRG00000012965)	GRAMD1B (ENSBGRG00000013095)	CLMP (ENSBGRG00000014616)	HSPA8 (ENSBGRG00000014719)	ENSBGRG00000015071	BSX (ENSBGRG00000015127)	ENSBGRG00000015174	JHY (ENSBGRG00000015236)	CRTAM (ENSBGRG00000015363)
Wild yak	MODERN SPECIES	842					SOX6 (ENSBMUG00000019308)	C11orf58 (ENSBMUG00000018970)	PLEKHA7 (ENSBMUG00000018920)	ENSBMUG00000018750	ENSBMUG00000018732	PIK3C2A (ENSBMUG00000018688)	NUCB2 (ENSBMUG00000018650)	ENSBMUG00000018622	KCNJ11 (ENSBMUG00000018613)	ABCC8 (ENSBMUG00000018420) #20	USH1C (ENSBMUG00000018213) #21	OTOG (ENSBMUG00000018131) #22	MYOD1 (ENSBMUG00000018081)	KCNC1 (ENSBMUG00000018067)	SERGEF (ENSBMUG00000018049)	TPH1 (ENSBMUG00000018029)	SAAL1 (ENSBMUG00000017997)	ENSBMUG00000017967	ENSBMUG00000017949	ZNF202 (ENSBMUG00000017926)	SCN3B (ENSBMUG00000017879)	GRAMD1B (ENSBMUG00000017822)
Bos_b	ANCESTRAL SPECIES	19	ENSGT00940000166205.a.c.a	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.s.b	ENSGT00940000157813	ENSGT00390000014320.l	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000161189	ENSGT00390000018560.b	ENSGT00940000156649	ENSGT00940000161031	ENSGT00950000183206.b.c.b	ENSGT00940000161473	ENSGT00390000002823	ENSGT00940000159804	ENSGT00940000156097
Cow	MODERN SPECIES	6	CALCB (ENSBTAG00000001516)	CALCA (ENSBTAG00000010089)	CALCB (ENSBTAG00000047380)	INSC (ENSBTAG00000032782)	SOX6 (ENSBTAG00000044185)	C15H11orf58 (ENSBTAG00000006755)	PLEKHA7 (ENSBTAG00000006974)	RPS13 (ENSBTAG00000040308)	ENSBTAG00000032859	PIK3C2A (ENSBTAG00000004901)	NUCB2 (ENSBTAG00000017468)	NCR3LG1 (ENSBTAG00000050060)	KCNJ11 (ENSBTAG00000016170)	ABCC8 (ENSBTAG00000000983) #20	USH1C (ENSBTAG00000000986) #21	OTOG (ENSBTAG00000000987) #22	MYOD1 (ENSBTAG00000002216)	KCNC1 (ENSBTAG00000005424)	SERGEF (ENSBTAG00000005340)	TPH1 (ENSBTAG00000005343)	SAAL1 (ENSBTAG00000008804)	ENSBTAG00000050079	ZNF202 (ENSBTAG00000016684)	SCN3B (ENSBTAG00000016768)	GRAMD1B (ENSBTAG00000001410)	CLMP (ENSBTAG00000020046)	HSPA8 (ENSBTAG00000013162)	BSX (ENSBTAG00000013994)	JHY (ENSBTAG00000013989)	CRTAM (ENSBTAG00000005193)	UBASH3B (ENSBTAG00000000842)
Hybrid Bos Indicus	MODERN SPECIES	6	ENSBIXG00005001650	INSC (ENSBIXG00005013489)	SOX6 (ENSBIXG00005013279)	ENSBIXG00005001497	C11orf58 (ENSBIXG00005013055)	PLEKHA7 (ENSBIXG00005012963)	ENSBIXG00005012803	ENSBIXG00005005701	PIK3C2A (ENSBIXG00005000289)	ENSBIXG00005012679	NUCB2 (ENSBIXG00005012643)	ENSBIXG00005012573	KCNJ11 (ENSBIXG00005012565)	ABCC8 (ENSBIXG00005000335) #20	USH1C (ENSBIXG00005012316) #21	OTOG (ENSBIXG00005012215) #22	MYOD1 (ENSBIXG00005001263)	KCNC1 (ENSBIXG00005012180)	SERGEF (ENSBIXG00005012129)	TPH1 (ENSBIXG00005001239)	SAAL1 (ENSBIXG00005001235)	ENSBIXG00005011994	ENSBIXG00005011988	ENSBIXG00005001194	ZNF202 (ENSBIXG00005001192)	SCN3B (ENSBIXG00005011870)	GRAMD1B (ENSBIXG00005011762)	CLMP (ENSBIXG00005011593)	ENSBIXG00005011538	BSX (ENSBIXG00005011376)	JHY (ENSBIXG00005011352)
American bison	MODERN SPECIES	3365	ENSBBBG00000014736	ENSBBBG00000007170	ENSBBBG00000003643	ENSBBBG00000014818	INSC (ENSBBBG00000001200)	SOX6 (ENSBBBG00000000977)	C11orf58 (ENSBBBG00000000901)	PLEKHA7 (ENSBBBG00000014936)	ENSBBBG00000003602	PIK3C2A (ENSBBBG00000003706)	ENSBBBG00000014999	NUCB2 (ENSBBBG00000015107)	KCNJ11 (ENSBBBG00000015136)	ABCC8 (ENSBBBG00000015495) #20	USH1C (ENSBBBG00000015646) #21	OTOG (ENSBBBG00000000781) #22	MYOD1 (ENSBBBG00000015770)	KCNC1 (ENSBBBG00000015796)	SERGEF (ENSBBBG00000015878)	TPH1 (ENSBBBG00000007903)	SAAL1 (ENSBBBG00000015979)	ZNF202 (ENSBBBG00000016005)	SCN3B (ENSBBBG00000016043)	GRAMD1B (ENSBBBG00000000719)	CLMP (ENSBBBG00000016837)	ENSBBBG00000018029	BSX (ENSBBBG00000018188)	JHY (ENSBBBG00000018276)	CRTAM (ENSBBBG00000018292)	UBASH3B (ENSBBBG00000018323)	ENSBBBG00000018379
Siberian musk deer	MODERN SPECIES	1170	ENSMMSG00000013014	ENSMMSG00000013030	INSC (ENSMMSG00000013119)	ENSMMSG00000013203	SOX6 (ENSMMSG00000013238)	ENSMMSG00000013376	C11orf58 (ENSMMSG00000013390)	PLEKHA7 (ENSMMSG00000013421)	ENSMMSG00000013583	PIK3C2A (ENSMMSG00000013636)	NUCB2 (ENSMMSG00000013778)	ENSMMSG00000013898	KCNJ11 (ENSMMSG00000013924)	ABCC8 (ENSMMSG00000014012) #20	USH1C (ENSMMSG00000015357) #21	OTOG (ENSMMSG00000015691) #22	ENSMMSG00000015857	ENSMMSG00000015872	MYOD1 (ENSMMSG00000015886)	KCNC1 (ENSMMSG00000015913)	SERGEF (ENSMMSG00000015986)	TPH1 (ENSMMSG00000016054)	SAAL1 (ENSMMSG00000016101)	ENSMMSG00000016147	ZNF202 (ENSMMSG00000016172)	SCN3B (ENSMMSG00000016197)	GRAMD1B (ENSMMSG00000016337)	CLMP (ENSMMSG00000019631)	ENSMMSG00000019680	BSX (ENSMMSG00000019731)	JHY (ENSMMSG00000019753)
Yarkand deer	MODERN SPECIES		ENSCHYG00000017694	ENSCHYG00000017642	ENSCHYG00000017547	INSC (ENSCHYG00000017107)	ENSCHYG00000017074	SOX6 (ENSCHYG00000016309)	C11orf58 (ENSCHYG00000016095)	PLEKHA7 (ENSCHYG00000015374)	ENSCHYG00000015259	PIK3C2A (ENSCHYG00000014721)	NUCB2 (ENSCHYG00000014573)	ENSCHYG00000014538	KCNJ11 (ENSCHYG00000014523)	ABCC8 (ENSCHYG00000013838) #20	USH1C (ENSCHYG00000013383) #21	OTOG (ENSCHYG00000013158) #22	MYOD1 (ENSCHYG00000013095)	KCNC1 (ENSCHYG00000013038)	SERGEF (ENSCHYG00000012902)	TPH1 (ENSCHYG00000012793)	SAAL1 (ENSCHYG00000012719)	ENSCHYG00000012579	ZNF202 (ENSCHYG00000012502)	SCN3B (ENSCHYG00000012415)	GRAMD1B (ENSCHYG00000011570)	CLMP (ENSCHYG00000011450)	HSPA8 (ENSCHYG00000011182)	ENSCHYG00000011140	BSX (ENSCHYG00000011105)	JHY (ENSCHYG00000011012)	CRTAM (ENSCHYG00000010922)
Camelidae	ANCESTRAL SPECIES	25	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000166205.a	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00990000212997	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Arabian camel	MODERN SPECIES	1	CYP2R1 (ENSCDRG00005017151)	ENSCDRG00005017138	ENSCDRG00005017126	ENSCDRG00005017091	ENSCDRG00005017047	INSC (ENSCDRG00005016735)	SOX6 (ENSCDRG00005016113)	C11orf58 (ENSCDRG00005016004)	PLEKHA7 (ENSCDRG00005015761)	RPS13 (ENSCDRG00005015649)	PIK3C2A (ENSCDRG00005015424)	NUCB2 (ENSCDRG00005015072)	KCNJ11 (ENSCDRG00005015019)	ABCC8 (ENSCDRG00005014728) #20	USH1C (ENSCDRG00005014521) #21	OTOG (ENSCDRG00005014084) #22	MYOD1 (ENSCDRG00005014006)	KCNC1 (ENSCDRG00005013940)	SERGEF (ENSCDRG00005013823)	TPH1 (ENSCDRG00005013726)	SAAL1 (ENSCDRG00005013646)	ENSCDRG00005013613	ENSCDRG00005013545	HPS5 (ENSCDRG00005013369)	GTF2H1 (ENSCDRG00005013223)	ENSCDRG00005013197	ENSCDRG00005013169	LDHC (ENSCDRG00005012071)	TSG101 (ENSCDRG00005011857)	UEVLD (ENSCDRG00005011579)	ENSCDRG00005011524
Alpaca	MODERN SPECIES	2523																ENSVPAG00000003258 #22
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00940000162876	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000175801	ENSGT00390000017491.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT01030000235549	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064
Carnivora	ANCESTRAL SPECIES	7	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000175801	ENSGT00390000017491.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.a	ENSGT01030000235549	ENSGT00940000153201.j.n	ENSGT00940000153201.j.m.b	ENSGT00940000161479
Caniformia	ANCESTRAL SPECIES	25	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000175801	ENSGT00390000017491.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.a	ENSGT01030000235549	ENSGT00940000153201.j.n	ENSGT00940000161479	ENSGT00940000153903.a.a
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00940000166205	ENSGT00940000167380	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT01050000247925
Ursidae	ANCESTRAL SPECIES	2	ENSGT00940000158305	ENSGT00940000156267	ENSGT00940000162876	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.a	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT01050000247925
Giant Panda	MODERN SPECIES	7	CYP2R1 (ENSAMEG00000002507)	CALCB (ENSAMEG00000001579)	ENSAMEG00000015132	INSC (ENSAMEG00000015118)	SOX6 (ENSAMEG00000015112)	C11orf58 (ENSAMEG00000002845)	PLEKHA7 (ENSAMEG00000002856)	ENSAMEG00000002891	ENSAMEG00000002895	PIK3C2A (ENSAMEG00000002916)	NUCB2 (ENSAMEG00000002982)	ENSAMEG00000003021	KCNJ11 (ENSAMEG00000019510)	ABCC8 (ENSAMEG00000003026) #20	USH1C (ENSAMEG00000003181) #21	OTOG (ENSAMEG00000003146) #22	MYOD1 (ENSAMEG00000018197)	KCNC1 (ENSAMEG00000018198)	SERGEF (ENSAMEG00000028965)	TPH1 (ENSAMEG00000018200)	SAAL1 (ENSAMEG00000018204)	ENSAMEG00000024218	ENSAMEG00000023602	HPS5 (ENSAMEG00000017819)	GTF2H1 (ENSAMEG00000017836)	ENSAMEG00000017854	LDHC (ENSAMEG00000017872)	TSG101 (ENSAMEG00000017874)	UEVLD (ENSAMEG00000017885)	MISFA (ENSAMEG00000017904)	ENSAMEG00000028723
Ursus	ANCESTRAL SPECIES	201			ENSGT00940000162876	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626.k #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b
Polar bear	MODERN SPECIES	327			CALCA (ENSUMAG00000023404)	ENSUMAG00000023409	INSC (ENSUMAG00000023412)	SOX6 (ENSUMAG00000023422)	C11orf58 (ENSUMAG00000023447)	PLEKHA7 (ENSUMAG00000023454)	RPS13 (ENSUMAG00000023470)	PIK3C2A (ENSUMAG00000023475)	NUCB2 (ENSUMAG00000023477)	ENSUMAG00000023479	KCNJ11 (ENSUMAG00000023484)	ABCC8 (ENSUMAG00000023493) #20	USH1C (ENSUMAG00000023605) #21	OTOG (ENSUMAG00000023622) #22	MYOD1 (ENSUMAG00000023628)	KCNC1 (ENSUMAG00000023629)	SERGEF (ENSUMAG00000023630)	TPH1 (ENSUMAG00000023633)	SAAL1 (ENSUMAG00000023648)	ENSUMAG00000000113
Mustelinae	ANCESTRAL SPECIES	30	ENSGT00940000158305	ENSGT00940000166205	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.n	ENSGT00940000161479.e	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b
American mink	MODERN SPECIES	13	PDE3B (ENSNVIG00000020721)	CYP2R1 (ENSNVIG00000020712)	CALCA (ENSNVIG00000020682)	CALCB (ENSNVIG00000020671)	INSC (ENSNVIG00000020515)	SOX6 (ENSNVIG00000020411)	C11orf58 (ENSNVIG00000020393)	PLEKHA7 (ENSNVIG00000020293)	RPS13 (ENSNVIG00000020246)	PIK3C2A (ENSNVIG00000020155)	NUCB2 (ENSNVIG00000020065)	B7H6 (ENSNVIG00000020028)	KCNJ11 (ENSNVIG00000020022)	ABCC8 (ENSNVIG00000019489) #20	USH1C (ENSNVIG00000019256) #21	OTOG (ENSNVIG00000019193) #22	MYOD1 (ENSNVIG00000019177)	KCNC1 (ENSNVIG00000019159)	SERGEF (ENSNVIG00000019122)	TPH1 (ENSNVIG00000019049)	SAAL1 (ENSNVIG00000018995)	ENSNVIG00000018957	ENSNVIG00000018941	ENSNVIG00000018923	HPS5 (ENSNVIG00000018867)	TF2H1 (ENSNVIG00000018843)	ENSNVIG00000018827	LDHC (ENSNVIG00000018779)	ENSNVIG00000018751	UEVLD (ENSNVIG00000018596)	MISFA (ENSNVIG00000018586)
Ferret	MODERN SPECIES	194	ENSMPUG00000013255	ENSMPUG00000013259	CALCB (ENSMPUG00000013262)	INSC (ENSMPUG00000013267)	ENSMPUG00000013278	SOX6 (ENSMPUG00000013283)	C11orf58 (ENSMPUG00000013301)	PLEKHA7 (ENSMPUG00000013304)	ENSMPUG00000013316	PIK3C2A (ENSMPUG00000013343)	NUCB2 (ENSMPUG00000013355)	ENSMPUG00000013361	KCNJ11 (ENSMPUG00000019000)	ABCC8 (ENSMPUG00000013368) #20	USH1C (ENSMPUG00000013383) #21	OTOG (ENSMPUG00000013475) #22	MYOD1 (ENSMPUG00000013563)	KCNC1 (ENSMPUG00000013565)	SERGEF (ENSMPUG00000013567)	TPH1 (ENSMPUG00000013571)	SAAL1 (ENSMPUG00000013717)	ENSMPUG00000013721	ENSMPUG00000013724	HPS5 (ENSMPUG00000013726)	GTF2H1 (ENSMPUG00000013729)	ENSMPUG00000013730	ENSMPUG00000013766	TSG101 (ENSMPUG00000013769)	UEVLD (ENSMPUG00000013774)	SPTY2D1 (ENSMPUG00000013816)	TMEM86A (ENSMPUG00000013825)
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000175801	ENSGT00390000017491.s.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.a.f	ENSGT01030000235549	ENSGT00940000153201.j.n.j	ENSGT00940000161479	ENSGT00940000153903.a.a
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00940000162876.l	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.e.b	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.a.b	ENSGT00940000175801	ENSGT00390000017491.t.u.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b.m	ENSGT00390000004737.b.a.o.a.a.a.a.c	ENSGT00390000004737.b.a.o.a.a.a.b.n.a	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.a.f	ENSGT01030000235549	ENSGT00940000153201.j.n.j	ENSGT00940000161479	ENSGT00940000153903.a.a
Dingo	MODERN SPECIES	231	ENSCAFG00020017290	INSC (ENSCAFG00020017307)	SOX6 (ENSCAFG00020017327)	ENSCAFG00020017379	PLEKHA7 (ENSCAFG00020017394)	ENSCAFG00020017408	ENSCAFG00020017410	ENSCAFG00020017417	ENSCAFG00020017434	NUCB2 (ENSCAFG00020017444)	ENSCAFG00020017461	ENSCAFG00020017465	KCNJ11 (ENSCAFG00020017466)	ABCC8 (ENSCAFG00020017543) #20	USH1C (ENSCAFG00020018102) #21	OTOG (ENSCAFG00020018311) #22	MYOD1 (ENSCAFG00020018371)	KCNC1 (ENSCAFG00020018373)	SERGEF (ENSCAFG00020018379)	TPH1 (ENSCAFG00020018391)	SAAL1 (ENSCAFG00020018406)	ENSCAFG00020018409	ENSCAFG00020018410	ENSCAFG00020018412	ENSCAFG00020018417	ENSCAFG00020018420	HPS5 (ENSCAFG00020018444)	GTF2H1 (ENSCAFG00020018689)	ENSCAFG00020018694	LDHC (ENSCAFG00020018722)	ENSCAFG00020018780
Dog	MODERN SPECIES	13	CRSP-3 (ENSCAFG00845023281)	CRSP-2 (ENSCAFG00845023366)	CALCA (ENSCAFG00845023464)	INSC (ENSCAFG00845023608)	SOX6 (ENSCAFG00845024251)	C21H11orf58 (ENSCAFG00845025441)	PLEKHA7 (ENSCAFG00845025657)	RPS13 (ENSCAFG00845026930)	PIK3C2A (ENSCAFG00845027085)	ENSCAFG00845014128	NUCB2 (ENSCAFG00845014171)	ENSCAFG00845014205	KCNJ11 (ENSCAFG00845014223)	ABCC8 (ENSCAFG00845014269) #20	USH1C (ENSCAFG00845014411) #21	OTOG (ENSCAFG00845014610) #22	MYOD1 (ENSCAFG00845014938)	KCNC1 (ENSCAFG00845014972)	SERGEF (ENSCAFG00845015032)	TPH1 (ENSCAFG00845015143)	SAAL1 (ENSCAFG00845015248)	ENSCAFG00845015397	SAA1 (ENSCAFG00845015494)	ENSCAFG00845015612	HPS5 (ENSCAFG00845015814)	GTF2H1 (ENSCAFG00845016048)	ENSCAFG00845016105	ENSCAFG00845016146	LDHC (ENSCAFG00845016401)	TSG101 (ENSCAFG00845016679)	UEVLD (ENSCAFG00845017016)
Red fox	MODERN SPECIES	70	CYP2R1 (ENSVVUG00000024223)	ENSVVUG00000024222	CALCB (ENSVVUG00000024219)	ENSVVUG00000024218	INSC (ENSVVUG00000024215)	SOX6 (ENSVVUG00000024203)	ENSVVUG00000024192	PLEKHA7 (ENSVVUG00000024123)	RPS13 (ENSVVUG00000024098)	PIK3C2A (ENSVVUG00000024074)	NUCB2 (ENSVVUG00000024060)	ENSVVUG00000024057	KCNJ11 (ENSVVUG00000024056)	ABCC8 (ENSVVUG00000024039) #20	USH1C (ENSVVUG00000024033) #21	OTOG (ENSVVUG00000024003) #22	MYOD1 (ENSVVUG00000023995)	KCNC1 (ENSVVUG00000023991)	SERGEF (ENSVVUG00000023986)	TPH1 (ENSVVUG00000023982)	SAAL1 (ENSVVUG00000023978)	ENSVVUG00000023973	ENSVVUG00000023969
Felidae	ANCESTRAL SPECIES		ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.j.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684.g	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.b	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT01050000247925
Panthera	ANCESTRAL SPECIES	13	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.j.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684.g	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b.k	ENSGT00390000004737.b.a.o.a.a.a.a.h	ENSGT00390000004737.b.a.o.a.a.a.a.g	ENSGT00390000004737.b.a.o.a.a.a.b.l	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.b	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
Tiger	MODERN SPECIES	586																ENSPTIG00000013033 #22	KCNC1 (ENSPTIG00000014448)	SERGEF (ENSPTIG00000016255)	TPH1 (ENSPTIG00000019857)	SAAL1 (ENSPTIG00000020213)	ENSPTIG00000005385	ENSPTIG00000005766	ENSPTIG00000008520	ENSPTIG00000010049	HPS5 (ENSPTIG00000010507)	GTF2H1 (ENSPTIG00000015340)	LDHA (ENSPTIG00000016734)	LDHC (ENSPTIG00000007918)	ENSPTIG00000011335	TSG101 (ENSPTIG00000011586)	UEVLD (ENSPTIG00000013958)
Panthera_a	ANCESTRAL SPECIES	20	ENSGT00550000074855.u.a	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u.j.a	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684.g	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b.k	ENSGT00390000004737.b.a.o.a.a.a.a.h	ENSGT00390000004737.b.a.o.a.a.a.a.g	ENSGT00390000004737.b.a.o.a.a.a.b.l	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j.m.b	ENSGT00940000161479	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b
leopard	MODERN SPECIES	29	CALCB (ENSPPRG00000020148)	INSC (ENSPPRG00000016954)	ENSPPRG00000013736	SOX6 (ENSPPRG00000013207)	C11orf58 (ENSPPRG00000009350)	PLEKHA7 (ENSPPRG00000008439)	ENSPPRG00000005193	PIK3C2A (ENSPPRG00000004750)	ENSPPRG00000004343	NUCB2 (ENSPPRG00000003722)	ENSPPRG00000001436	ENSPPRG00000001001	KCNJ11 (ENSPPRG00000017642)	ABCC8 (ENSPPRG00000000376) #20	USH1C (ENSPPRG00000014239) #21	OTOG (ENSPPRG00000010741) #22	MYOD1 (ENSPPRG00000003796)	KCNC1 (ENSPPRG00000003611)	SERGEF (ENSPPRG00000003386)	TPH1 (ENSPPRG00000001846)	SAAL1 (ENSPPRG00000001488)	ENSPPRG00000000993	ENSPPRG00000023577	ENSPPRG00000024065	ENSPPRG00000024363	HPS5 (ENSPPRG00000022226)	GTF2H1 (ENSPPRG00000020251)	ENSPPRG00000014382	LDHC (ENSPPRG00000010475)	ENSPPRG00000008586	ENSPPRG00000006170
lion	MODERN SPECIES	10	CYP2R1 (ENSPLOG00000009867)	CALCA (ENSPLOG00000009923)	INSC (ENSPLOG00000010032)	SOX6 (ENSPLOG00000010257)	ENSPLOG00000010453	C11orf58 (ENSPLOG00000010495)	PLEKHA7 (ENSPLOG00000010586)	RPS13 (ENSPLOG00000010890)	PIK3C2A (ENSPLOG00000010953)	ENSPLOG00000011047	NUCB2 (ENSPLOG00000011132)	ENSPLOG00000011439	KCNJ11 (ENSPLOG00000011463)	ABCC8 (ENSPLOG00000011679) #20	USH1C (ENSPLOG00000014009) #21	OTOG (ENSPLOG00000014950) #22	MYOD1 (ENSPLOG00000015478)	KCNC1 (ENSPLOG00000015532)	SERGEF (ENSPLOG00000015624)	TPH1 (ENSPLOG00000015838)	SAAL1 (ENSPLOG00000015945)	ENSPLOG00000016007	ENSPLOG00000016063	HPS5 (ENSPLOG00000016112)	GTF2H1 (ENSPLOG00000016181)	ENSPLOG00000016282	LDHC (ENSPLOG00000016357)	TSG101 (ENSPLOG00000016477)	UEVLD (ENSPLOG00000016574)	MISFA (ENSPLOG00000016698)	ENSPLOG00000016726
Cat	MODERN SPECIES	241	ENSFCAG00000035489	ENSFCAG00000051414	CALCB (ENSFCAG00000034071)	INSC (ENSFCAG00000002733)	SOX6 (ENSFCAG00000002214)	CD1H11orf58 (ENSFCAG00000036407)	PLEKHA7 (ENSFCAG00000007029)	ENSFCAG00000033219	ENSFCAG00000042979	PIK3C2A (ENSFCAG00000023161)	NUCB2 (ENSFCAG00000007304)	NCR3LG1 (ENSFCAG00000023665)	KCNJ11 (ENSFCAG00000007305)	ABCC8 (ENSFCAG00000004967) #20	USH1C (ENSFCAG00000004971) #21	OTOG (ENSFCAG00000004972) #22	MYOD1 (ENSFCAG00000004973)	KCNC1 (ENSFCAG00000004974)	SERGEF (ENSFCAG00000000209)	TPH1 (ENSFCAG00000025053)	SAAL1 (ENSFCAG00000000210)	ENSFCAG00000046392	ENSFCAG00000042268	HPS5 (ENSFCAG00000011158)	GTF2H1 (ENSFCAG00000007117)	LDHA (ENSFCAG00000015735)	LDHC (ENSFCAG00000034264)	TSG101 (ENSFCAG00000028742)	UEVLD (ENSFCAG00000015742)	MISFA (ENSFCAG00000035445)	ENSFCAG00000048198
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a
Equus	ANCESTRAL SPECIES	40	ENSGT00940000158305	ENSGT00940000162876	ENSGT00390000013819	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.b.e	ENSGT01030000234639.A.b.a.b.a.b.b.e.b.a	ENSGT00390000004737.b.a.o.a.a.b.eb.b	ENSGT00390000004737.b.a.o.a.a.b.fb.a	ENSGT00390000004737.b.a.o.a.b.f.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479
Horse	MODERN SPECIES	28	CALCA (ENSECAG00000007825)	ENSECAG00000008669	ENSECAG00000008818	INSC (ENSECAG00000009559)	SOX6 (ENSECAG00000010880)	ENSECAG00000050226	C7H11orf58 (ENSECAG00000011778)	PLEKHA7 (ENSECAG00000011848)	RPS13 (ENSECAG00000014928)	PIK3C2A (ENSECAG00000014963)	NUCB2 (ENSECAG00000016586)	ENSECAG00000054585	KCNJ11 (ENSECAG00000001643)	ABCC8 (ENSECAG00000020074) #20	USH1C (ENSECAG00000024745) #21	OTOG (ENSECAG00000025047) #22	MYOD1 (ENSECAG00000002132)	KCNC1 (ENSECAG00000002236)	SERGEF (ENSECAG00000056096)	SERGEF (ENSECAG00000005626)	SAAL1 (ENSECAG00000009781)	ENSECAG00000011404	ENSECAG00000032096	ENSECAG00000030592	ENSECAG00000013758	ENSECAG00000034393	ENSECAG00000048632	ENSECAG00000036499	HPS5 (ENSECAG00000015720)	GTF2H1 (ENSECAG00000019056)	LDHA (ENSECAG00000020669)
Donkey	MODERN SPECIES	12	ENSEASG00005006008	ENSEASG00005027691	ENSEASG00005030327	CALCB (ENSEASG00005006012)	INSC (ENSEASG00005006018)	SOX6 (ENSEASG00005006024)	C11orf58 (ENSEASG00005033834)	PLEKHA7 (ENSEASG00005006038)	ENSEASG00005006041	PIK3C2A (ENSEASG00005006116)	NUCB2 (ENSEASG00005006907)	ENSEASG00005006925	KCNJ11 (ENSEASG00005032263)	ABCC8 (ENSEASG00005007029) #20	USH1C (ENSEASG00005007566) #21	OTOG (ENSEASG00005007567) #22	MYOD1 (ENSEASG00005007569)	KCNC1 (ENSEASG00005007570)	SERGEF (ENSEASG00005007572)	TPH1 (ENSEASG00005007573)	ENSEASG00005007574	ENSEASG00005007576	ENSEASG00005023828	ENSEASG00005030092	ENSEASG00005034187	ENSEASG00005031856	ENSEASG00005012966	ENSEASG00005037086	ENSEASG00005035911	ENSEASG00005035302	ENSEASG00005026588
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000164064	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A
Megabat	MODERN SPECIES	2033									PLEKHA7 (ENSPVAG00000012804)	RPS13 (ENSPVAG00000012806)	PIK3C2A (ENSPVAG00000012807)	NUCB2 (ENSPVAG00000012810)	ENSPVAG00000012812	ABCC8 (ENSPVAG00000012814) #20	USH1C (ENSPVAG00000012818) #21	OTOG (ENSPVAG00000012824) #22	MYOD1 (ENSPVAG00000012829)	KCNC1 (ENSPVAG00000012831)	SERGEF (ENSPVAG00000012835)	TPH1 (ENSPVAG00000012838)	SAAL1 (ENSPVAG00000012842)	ENSPVAG00000012844
Microchiroptera	ANCESTRAL SPECIES	31	ENSGT00940000158305	ENSGT00940000162876	ENSGT00940000156267	ENSGT00940000167380	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t.u	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000163242.a	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A
Microbat	MODERN SPECIES	1061				ENSMLUG00000009029	SOX6 (ENSMLUG00000007911)	C11orf58 (ENSMLUG00000001589)	PLEKHA7 (ENSMLUG00000001591)	ENSMLUG00000009751	PIK3C2A (ENSMLUG00000007089)	ENSMLUG00000029239	ENSMLUG00000024625	KCNJ11 (ENSMLUG00000012273)	NUCB2 (ENSMLUG00000004101)	ABCC8 (ENSMLUG00000012276) #20	USH1C (ENSMLUG00000002529) #21	OTOG (ENSMLUG00000002545) #22	ENSMLUG00000029772	MYOD1 (ENSMLUG00000007940)	KCNC1 (ENSMLUG00000007950)	ENSMLUG00000007974	TPH1 (ENSMLUG00000008011)	SAAL1 (ENSMLUG00000008022)	ENSMLUG00000028709	ENSMLUG00000016314	ENSMLUG00000008051	HPS5 (ENSMLUG00000016318)	GTF2H1 (ENSMLUG00000016329)	ENSMLUG00000016343	LDHC (ENSMLUG00000016348)	TSG101 (ENSMLUG00000016353)	UEVLD (ENSMLUG00000016358)
Greater horseshoe bat	MODERN SPECIES	2	ENSRFEG00010021405	ENSRFEG00010021391	INSC (ENSRFEG00010021354)	SOX6 (ENSRFEG00010021298)	ENSRFEG00010021282	C11orf58 (ENSRFEG00010021253)	PLEKHA7 (ENSRFEG00010021179)	ENSRFEG00010021136	PIK3C2A (ENSRFEG00010021091)	NUCB2 (ENSRFEG00010021004)	ENSRFEG00010020981	KCNJ11 (ENSRFEG00010020978)	ENSRFEG00010020967	ABCC8 (ENSRFEG00010020943) #20	USH1C (ENSRFEG00010020886) #21	OTOG (ENSRFEG00010020852) #22	MYOD1 (ENSRFEG00010020830)	KCNC1 (ENSRFEG00010020809)	ENSRFEG00010020796	SERGEF (ENSRFEG00010020728)	TPH1 (ENSRFEG00010020684)	SAAL1 (ENSRFEG00010020641)	ENSRFEG00010020599	ENSRFEG00010020584	ENSRFEG00010020556	ENSRFEG00010020515	HPS5 (ENSRFEG00010020475)	GTF2H1 (ENSRFEG00010020416)	ENSRFEG00010020271	LDHC (ENSRFEG00010020017)	ENSRFEG00010019955
Atlantogenata	ANCESTRAL SPECIES	13	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A
Xenarthra	ANCESTRAL SPECIES	1009														ENSGT00940000156626.h #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912
Armadillo	MODERN SPECIES	788									ENSDNOG00000038648	ENSDNOG00000045802	ENSDNOG00000031477	NUP43 (ENSDNOG00000046324)	LATS1 (ENSDNOG00000019236)	ENSDNOG00000034858 #20	USH1C (ENSDNOG00000031779) #21	OTOG (ENSDNOG00000015439) #22	MYOD1 (ENSDNOG00000017164)	KCNC1 (ENSDNOG00000048695)	ENSDNOG00000039972
Afrotheria	ANCESTRAL SPECIES	16	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123
Tenrec	MODERN SPECIES	7852																ENSETEG00000003070 #22
Afrotheria_a	ANCESTRAL SPECIES	17	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00940000162876	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123
Elephant	MODERN SPECIES	209	ENSLAFG00000027121	PDE3B (ENSLAFG00000008453)	CYP2R1 (ENSLAFG00000005356)	ENSLAFG00000003276	ENSLAFG00000015843	INSC (ENSLAFG00000005686)	SOX6 (ENSLAFG00000002917)	C11orf58 (ENSLAFG00000007606)	PLEKHA7 (ENSLAFG00000007609)	RPS13 (ENSLAFG00000026881)	PIK3C2A (ENSLAFG00000003710)	NUCB2 (ENSLAFG00000007349)	KCNJ11 (ENSLAFG00000031878)	ABCC8 (ENSLAFG00000007014) #20	USH1C (ENSLAFG00000022470) #21	OTOG (ENSLAFG00000004882) #22	MYOD1 (ENSLAFG00000018353)	KCNC1 (ENSLAFG00000018355)	SERGEF (ENSLAFG00000018367)	ENSLAFG00000007862	ENSLAFG00000027166	HPS5 (ENSLAFG00000011289)	GTF2H1 (ENSLAFG00000011296)	ENSLAFG00000011307	LDHAL6B (ENSLAFG00000003680)	TSG101 (ENSLAFG00000003682)	UEVLD (ENSLAFG00000020671)	SPTY2D1 (ENSLAFG00000003686)	TMEM86A (ENSLAFG00000002024)	IGSF22 (ENSLAFG00000031965)	PTPN5 (ENSLAFG00000013689)
Hyrax	MODERN SPECIES	6610												ENSPCAG00000000405	KCNJ11 (ENSPCAG00000000428)	ABCC8 (ENSPCAG00000000435) #20	USH1C (ENSPCAG00000000525) #21	OTOG (ENSPCAG00000000621) #22
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066.a	ENSGT00940000153201.j	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000154133.A	ENSGT00390000007101.d.b
Opossum	MODERN SPECIES	4	ENSMODG00000007288	PDE3B (ENSMODG00000007280)	CYP2R1 (ENSMODG00000007273)	INSC (ENSMODG00000007236)	ENSMODG00000024593	ENSMODG00000029280	SOX6 (ENSMODG00000007224)	C11orf58 (ENSMODG00000043387)	PLEKHA7 (ENSMODG00000007138)	RPS13 (ENSMODG00000007078)	ENSMODG00000007062	NUCB2 (ENSMODG00000007015)	KCNJ11 (ENSMODG00000007004)	ABCC8 (ENSMODG00000006995) #20	USH1C (ENSMODG00000006841) #21	OTOG (ENSMODG00000006791) #22	MYOD1 (ENSMODG00000006749)	KCNC1 (ENSMODG00000006734)	ENSMODG00000006721	TPH1 (ENSMODG00000006704)	SAAL1 (ENSMODG00000006679)	ENSMODG00000024617	HPS5 (ENSMODG00000006574)	ENSMODG00000006540	LDHA (ENSMODG00000006522)	ENSMODG00000006509	ENSMODG00000040672	ENSMODG00000006410	ENSMODG00000006389	ENSMODG00000049605	ENSMODG00000037593
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.b	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066.a	ENSGT00940000153201.i.a	ENSGT01030000235549	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000164956
Diprotodontia	ANCESTRAL SPECIES	10	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.b	ENSGT00940000155817.a.a	ENSGT00390000017491.t	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066.a	ENSGT00940000153201.i.a	ENSGT01030000235549	ENSGT00940000161479	ENSGT00940000163242	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000164956
Diprotodontia_a	ANCESTRAL SPECIES	12	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687.b	ENSGT00940000155817.a.a	ENSGT00390000017491.t.w	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e.e	ENSGT00940000163348.e.f	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066.a	ENSGT00940000153201.i.a.b	ENSGT01030000235549.a.b	ENSGT00940000161479	ENSGT01030000235549.a.a	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT01050000245084	ENSGT00940000164956
Common wonbat	MODERN SPECIES	608	CYP2R1 (ENSVURG00010005688)	ENSVURG00010005754	ENSVURG00010005761	INSC (ENSVURG00010005781)	SOX6 (ENSVURG00010005847)	C11orf58 (ENSVURG00010005869)	PLEKHA7 (ENSVURG00010005891)	RPS13 (ENSVURG00010005940)	PIK3C2A (ENSVURG00010005972)	NUCB2 (ENSVURG00010006037)	ENSVURG00010006183	ENSVURG00010006198	KCNJ11 (ENSVURG00010006207)	ABCC8 (ENSVURG00010006223) #20	USH1C (ENSVURG00010006258) #21	OTOG (ENSVURG00010006327) #22	MYOD1 (ENSVURG00010006453)	KCNC1 (ENSVURG00010006461)	SERGEF (ENSVURG00010006477)	TPH1 (ENSVURG00010006498)	SAAL1 (ENSVURG00010006512)
Wallaby	MODERN SPECIES	9443																OTOG (ENSMEUG00000007321) #22
Tasmanian devil	MODERN SPECIES	5	PSMA1 (ENSSHAG00000025274)	PDE3B (ENSSHAG00000014935)	CYP2R1 (ENSSHAG00000014886)	ENSSHAG00000025195	INSC (ENSSHAG00000014350)	ENSSHAG00000028264	SOX6 (ENSSHAG00000006502)	ENSSHAG00000008106	PLEKHA7 (ENSSHAG00000007139)	RPS13 (ENSSHAG00000004052)	PIK3C2A (ENSSHAG00000001008)	ENSSHAG00000028371	KCNJ11 (ENSSHAG00000022074)	ABCC8 (ENSSHAG00000017597) #20	USH1C (ENSSHAG00000017497) #21	OTOG (ENSSHAG00000017355) #22	MYOD1 (ENSSHAG00000017220)	KCNC1 (ENSSHAG00000022035)	ENSSHAG00000023659	TPH1 (ENSSHAG00000016519)	SAAL1 (ENSSHAG00000030904)	HPS5 (ENSSHAG00000016026)	GTF2H1 (ENSSHAG00000015946)	ENSSHAG00000025930	LDHC (ENSSHAG00000030723)	ENSSHAG00000029476	TSG101 (ENSSHAG00000015267)	ENSSHAG00000022059	ENSSHAG00000023698	SPTY2D1 (ENSSHAG00000015061)	ENSSHAG00000024232
Platypus	MODERN SPECIES	14	PDE3B (ENSOANG00000032034)	CYP2R1 (ENSOANG00000006368)	ENSOANG00000041034	INSC (ENSOANG00000030687)	ENSOANG00000001353	ENSOANG00000022345	ENSOANG00000050997	C11orf58 (ENSOANG00000036260)	PLEKHA7 (ENSOANG00000007688)	RPS13 (ENSOANG00000007687)	PIK3C2A (ENSOANG00000007685)	NUCB2 (ENSOANG00000007683)	ENSOANG00000045336	ABCC8 (ENSOANG00000007680) #20	ENSOANG00000007679 #21	OTOG (ENSOANG00000010676) #22	ENSOANG00000047737	KCNC1 (ENSOANG00000003052)	ENSOANG00000044323	TPH1 (ENSOANG00000050270)	ENSOANG00000000811	SAAL1 (ENSOANG00000000809)	ENSOANG00000000595	ENSOANG00000044149	HPS5 (ENSOANG00000044228)	GTF2H1 (ENSOANG00000014982)	LDHA (ENSOANG00000048733)	ENSOANG00000008367	TSG101 (ENSOANG00000008368)	UEVLD (ENSOANG00000050347)	SPTY2D1 (ENSOANG00000051208)
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000175801.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00980000200162	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000164122	ENSGT00940000154133.A
Lepidosauria	ANCESTRAL SPECIES	10	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000175801.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00980000200162	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000164956	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b
Episquamata	ANCESTRAL SPECIES		ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000175801.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00980000200162	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123
Laterata	ANCESTRAL SPECIES	2	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000013383	ENSGT00390000007101.d.b	ENSGT00940000160123
Common wall lizard	MODERN SPECIES		ENSPMRG00000005100	CYP2R1 (ENSPMRG00000000090)	CALCB (ENSPMRG00000000101)	ENSPMRG00000000108	INSC (ENSPMRG00000000119)	SOX6 (ENSPMRG00000000151)	C11orf58 (ENSPMRG00000000197)	PLEKHA7 (ENSPMRG00000000278)	RPS13 (ENSPMRG00000000463)	PIK3C2A (ENSPMRG00000001137)	NUCB2 (ENSPMRG00000002326)	ENSPMRG00000002342	KCNJ11 (ENSPMRG00000002356)	ABCC8 (ENSPMRG00000002883) #20	USH1C (ENSPMRG00000005026) #21	OTOG (ENSPMRG00000005049) #22	ENSPMRG00000005107	MYOD1 (ENSPMRG00000005112)	KCNC1 (ENSPMRG00000005116)	SERGEF (ENSPMRG00000005122)	TPH1 (ENSPMRG00000005139)	SAAL1 (ENSPMRG00000005195)	HPS5 (ENSPMRG00000005216)	GTF2H1 (ENSPMRG00000005288)	LDHA (ENSPMRG00000005300)	TSG101 (ENSPMRG00000005311)	ENSPMRG00000005321	SPTY2D1 (ENSPMRG00000005330)	C18orf21 (ENSPMRG00000005336)	TMEM86A (ENSPMRG00000005342)	IGSF22 (ENSPMRG00000005349)
Argentine black and white tegu	MODERN SPECIES	3	INSC (ENSSMRG00000014967)	ENSSMRG00000014961	SOX6 (ENSSMRG00000014958)	ENSSMRG00000014950	C11orf58 (ENSSMRG00000014949)	PLEKHA7 (ENSSMRG00000014940)	RPS13 (ENSSMRG00000014938)	PIK3C2A (ENSSMRG00000014936)	NUCB2 (ENSSMRG00000014933)	ENSSMRG00000014929	ENSSMRG00000014927	KCNJ11 (ENSSMRG00000014924)	ENSSMRG00000014922	ABCC8 (ENSSMRG00000014918) #20	USH1C (ENSSMRG00000014516) #21	OTOG (ENSSMRG00000014503) #22	ENSSMRG00000014497	MYOD1 (ENSSMRG00000014495)	KCNC1 (ENSSMRG00000014480)	SERGEF (ENSSMRG00000014477)	TPH1 (ENSSMRG00000014476)	SAAL1 (ENSSMRG00000014475)	HPS5 (ENSSMRG00000014207)	GTF2H1 (ENSSMRG00000014206)	LDHA (ENSSMRG00000014205)	TSG101 (ENSSMRG00000014204)	UEVLD (ENSSMRG00000014203)	SPTY2D1 (ENSSMRG00000014202)	ENSSMRG00000014201	TMEM86A (ENSSMRG00000014198)	IGSF22 (ENSSMRG00000014197)
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000175801.b	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00980000200162	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916	ENSGT00940000156870
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813.e	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00980000200162	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916	ENSGT00940000156870
Indian cobra	MODERN SPECIES		PDE3B (ENSNNAG00000000351)	CYP2R1 (ENSNNAG00000000329)	CALCB (ENSNNAG00000016369)	INSC (ENSNNAG00000016333)	ENSNNAG00000016327	SOX6 (ENSNNAG00000016276)	C11orf58 (ENSNNAG00000016255)	PLEKHA7 (ENSNNAG00000016200)	RPS13 (ENSNNAG00000016191)	PIK3C2A (ENSNNAG00000016104)	NUCB2 (ENSNNAG00000016084)	ENSNNAG00000016077	KCNJ11 (ENSNNAG00000016074)	ABCC8 (ENSNNAG00000015317) #20	USH1C (ENSNNAG00000014394) #21	OTOG (ENSNNAG00000013913) #22	MYOD1 (ENSNNAG00000013885)	ENSNNAG00000013869	KCNC1 (ENSNNAG00000013849)	SERGEF (ENSNNAG00000013832)	TPH1 (ENSNNAG00000013808)	SAAL1 (ENSNNAG00000013771)	HPS5 (ENSNNAG00000013337)	GTF2H1 (ENSNNAG00000013205)	LDHA (ENSNNAG00000013178)	TSG101 (ENSNNAG00000013150)	ENSNNAG00000013120	SPTY2D1 (ENSNNAG00000013097)	TMEM86A (ENSNNAG00000013088)	IGSF22 (ENSNNAG00000013035)	PTPN5 (ENSNNAG00000012998)
Elapidae_a	ANCESTRAL SPECIES	29	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813.e	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626.f #20	ENSGT00980000200162	ENSGT00940000156626.e #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916	ENSGT00940000156870
Acanthophiinae	ANCESTRAL SPECIES	29	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813.e	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626.f #20	ENSGT00980000200162	ENSGT00940000156626.e #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123	ENSGT00940000159916	ENSGT00940000156870
Mainland tiger snake	MODERN SPECIES	22	PSMA1 (ENSNSUG00000018427)	PDE3B (ENSNSUG00000018425)	CYP2R1 (ENSNSUG00000018424)	INSC (ENSNSUG00000018421)	SOX6 (ENSNSUG00000018420)	C11orf58 (ENSNSUG00000018419)	PLEKHA7 (ENSNSUG00000018214)	RPS13 (ENSNSUG00000018197)	ENSNSUG00000018194	ENSNSUG00000018193	NUCB2 (ENSNSUG00000018192)	ENSNSUG00000018191	KCNJ11 (ENSNSUG00000018189)	ABCC8 (ENSNSUG00000018128) #20	USH1C (ENSNSUG00000018127) #21	OTOG (ENSNSUG00000018126) #22	MYOD1 (ENSNSUG00000018125)	KCNC1 (ENSNSUG00000018123)	SERGEF (ENSNSUG00000018122)	TPH1 (ENSNSUG00000018121)	SAAL1 (ENSNSUG00000018114)	ENSNSUG00000018113	ENSNSUG00000018112	ENSNSUG00000018111	LDHA (ENSNSUG00000018110)	TSG101 (ENSNSUG00000018109)	ENSNSUG00000018106	SPTY2D1 (ENSNSUG00000018105)	TMEM86A (ENSNSUG00000018086)	PTPN5 (ENSNSUG00000018080)	PTPRJ (ENSNSUG00000018065)
Eastern brown snake	MODERN SPECIES	32	PDE3B (ENSPTXG00000000476)	CYP2R1 (ENSPTXG00000000493)	CALCB (ENSPTXG00000000580)	INSC (ENSPTXG00000000590)	SOX6 (ENSPTXG00000000601)	C11orf58 (ENSPTXG00000000613)	PLEKHA7 (ENSPTXG00000000617)	RPS13 (ENSPTXG00000000631)	PIK3C2A (ENSPTXG00000000640)	NUCB2 (ENSPTXG00000000649)	ENSPTXG00000000655	KCNJ11 (ENSPTXG00000000659)	ENSPTXG00000000661 #20	ENSPTXG00000000668	USH1C (ENSPTXG00000000688) #21	OTOG (ENSPTXG00000000874) #22	MYOD1 (ENSPTXG00000000885)	KCNC1 (ENSPTXG00000000887)	SERGEF (ENSPTXG00000000888)	TPH1 (ENSPTXG00000000890)	SAAL1 (ENSPTXG00000000891)	HPS5 (ENSPTXG00000000894)	GTF2H1 (ENSPTXG00000000897)	LDHA (ENSPTXG00000000902)	TSG101 (ENSPTXG00000000909)	ENSPTXG00000000912	SPTY2D1 (ENSPTXG00000000916)	TMEM86A (ENSPTXG00000000920)	IGSF22 (ENSPTXG00000000928)	PTPN5 (ENSPTXG00000000933)	PTPRJ (ENSPTXG00000000941)
Blue-lipped sea krait	MODERN SPECIES	9692																OTOG (ENSLLTG00000010693) #22
Lizard	MODERN SPECIES		CALCB (ENSACAG00000012729)	ENSACAG00000035660	ENSACAG00000034615	INSC (ENSACAG00000012740)	SOX6 (ENSACAG00000012782)	ENSACAG00000027158	C11orf58 (ENSACAG00000000042)	PLEKHA7 (ENSACAG00000000043)	ENSACAG00000038754	RPS13 (ENSACAG00000000044)	PIK3C2A (ENSACAG00000000045)	NUCB2 (ENSACAG00000000046)	KCNJ11 (ENSACAG00000000047)	ABCC8 (ENSACAG00000000048) #20	USH1C (ENSACAG00000000051) #21	OTOG (ENSACAG00000000052) #22	ENSACAG00000038180	ENSACAG00000037486	MYOD1 (ENSACAG00000039537)	KCNC1 (ENSACAG00000000055)	SERGEF (ENSACAG00000028890)	TPH1 (ENSACAG00000000057)	SAAL1 (ENSACAG00000000058)	HPS5 (ENSACAG00000000059)	GTF2H1 (ENSACAG00000000060)	ENSACAG00000000061	TSG101 (ENSACAG00000000062)	ENSACAG00000000063	ENSACAG00000000064	TMEM86A (ENSACAG00000000065)	ENSACAG00000043092
tuatara	MODERN SPECIES	351															USH1C (ENSSPUG00000001606) #21	OTOG (ENSSPUG00000001672) #22	ENSSPUG00000001764	MYOD1 (ENSSPUG00000001769)	KCNC1 (ENSSPUG00000001801)	SERGEF (ENSSPUG00000001823)	TPH1 (ENSSPUG00000001908)	SAAL1 (ENSSPUG00000001931)
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00980000200162	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000164122	ENSGT00940000154133.A
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00980000200162	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e.g.a	ENSGT00940000163348.e.g.b	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626.d #20	ENSGT00980000200162	ENSGT00940000156626.c #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b.fb.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123
Emydidae	ANCESTRAL SPECIES	10	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e.g.a	ENSGT00940000163348.e.g.b	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626.c #20	ENSGT00940000156626.d #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b.fb.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123
Three-toed box turtle	MODERN SPECIES	346													ENSTMTG00000022696	ENSTMTG00000022812 #20	USH1C (ENSTMTG00000022976) #21	OTOG (ENSTMTG00000022982) #22	ENSTMTG00000022987	MYOD1 (ENSTMTG00000022988)	KCNC1 (ENSTMTG00000022989)	SERGEF (ENSTMTG00000022991)	TPH1 (ENSTMTG00000022992)	SAAL1 (ENSTMTG00000022994)	HPS5 (ENSTMTG00000023014)	GTF2H1 (ENSTMTG00000023035)	LDHA (ENSTMTG00000023037)	TSG101 (ENSTMTG00000023038)	ENSTMTG00000023039	SPTY2D1 (ENSTMTG00000023041)	TMEM86A (ENSTMTG00000023043)	IGSF22 (ENSTMTG00000023046)	PTPN5 (ENSTMTG00000003391)
painted turtle	MODERN SPECIES	883							C11orf58 (ENSCPBG00000017624)	PLEKHA7 (ENSCPBG00000017618)	RPS13 (ENSCPBG00000017607)	PIK3C2A (ENSCPBG00000017597)	ENSCPBG00000017590	ENSCPBG00000017587	KCNJ11 (ENSCPBG00000017586)	ABCC8 (ENSCPBG00000017576) #20	USH1C (ENSCPBG00000017570) #21	OTOG (ENSCPBG00000017566) #22	ENSCPBG00000017562	MYOD1 (ENSCPBG00000017560)	KCNC1 (ENSCPBG00000017557)	SERGEF (ENSCPBG00000017555)	TPH1 (ENSCPBG00000017553)
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e.g.a	ENSGT00940000163348.e.g.b	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626.d #20	ENSGT00980000200162	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.a.b.gb	ENSGT00390000004737.b.a.o.a.a.a.b.fb.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT01000000216403	ENSGT00940000154133.A
Abingdon island giant tortoise	MODERN SPECIES	2086					SOX6 (ENSCABG00000004597)	C11orf58 (ENSCABG00000004602)	PLEKHA7 (ENSCABG00000004605)	RPS13 (ENSCABG00000004610)	PIK3C2A (ENSCABG00000004647)	NUCB2 (ENSCABG00000006522)	ENSCABG00000006577	ENSCABG00000006580	KCNJ11 (ENSCABG00000006581)	ABCC8 (ENSCABG00000006585) #20	USH1C (ENSCABG00000007497) #21	OTOG (ENSCABG00000007498) #22
Goode s thornscrub tortoise	MODERN SPECIES	18	PDE3B (ENSGEVG00005008333)	CYP2R1 (ENSGEVG00005008389)	CALCB (ENSGEVG00005008406)	INSC (ENSGEVG00005008452)	SOX6 (ENSGEVG00005008506)	C11orf58 (ENSGEVG00005008546)	PLEKHA7 (ENSGEVG00005008609)	RPS13 (ENSGEVG00005008637)	PIK3C2A (ENSGEVG00005008680)	NUCB2 (ENSGEVG00005008771)	ENSGEVG00005008800	KCNJ11 (ENSGEVG00005008823)	ABCC8 (ENSGEVG00005008865) #20	ENSGEVG00005009104	USH1C (ENSGEVG00005009326) #21	OTOG (ENSGEVG00005010473) #22	ENSGEVG00005010902	MYOD1 (ENSGEVG00005010944)	KCNC1 (ENSGEVG00005010986)	SERGEF (ENSGEVG00005011075)	TPH1 (ENSGEVG00005011260)	SAAL1 (ENSGEVG00005011345)	ENSGEVG00005011365	ENSGEVG00005011403	ENSGEVG00005011487	ENSGEVG00005011723	ENSGEVG00005011786	GTF2H1 (ENSGEVG00005011817)	LDHA (ENSGEVG00005011863)	TSG101 (ENSGEVG00005011900)	ENSGEVG00005011961
Chinese turtle	MODERN SPECIES	1997						SOX6 (ENSPSIG00000009027)	C11orf58 (ENSPSIG00000011124)	PLEKHA7 (ENSPSIG00000011487)	RPS13 (ENSPSIG00000011895)	PIK3C2A (ENSPSIG00000012164)	NUCB2 (ENSPSIG00000013888)	ENSPSIG00000014077	KCNJ11 (ENSPSIG00000000742)	ABCC8 (ENSPSIG00000014948) #20	USH1C (ENSPSIG00000009330) #21	OTOG (ENSPSIG00000010277) #22
Archosauria	ANCESTRAL SPECIES	5	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000160123
Australian saltwater crocodile	MODERN SPECIES	64	PSMA1 (ENSCPRG00005001325)	PDE3B (ENSCPRG00005001263)	CYP2R1 (ENSCPRG00005001210)	ENSCPRG00005001195	INSC (ENSCPRG00005001166)	SOX6 (ENSCPRG00005001080)	C11orf58 (ENSCPRG00005001016)	PLEKHA7 (ENSCPRG00005000979)	RPS13 (ENSCPRG00005000894)	PIK3C2A (ENSCPRG00005000874)	NUCB2 (ENSCPRG00005000844)	ENSCPRG00005000808	KCNJ11 (ENSCPRG00005000802)	ABCC8 (ENSCPRG00005000714) #20	USH1C (ENSCPRG00005000582) #21	OTOG (ENSCPRG00005000529) #22	ENSCPRG00005000446	MYOD1 (ENSCPRG00005000428)	KCNC1 (ENSCPRG00005000411)	SERGEF (ENSCPRG00005000274)	TPH1 (ENSCPRG00005000260)	SAAL1 (ENSCPRG00005000231)	ENSCPRG00005000214	ENSCPRG00005017256	HPS5 (ENSCPRG00005017251)	GTF2H1 (ENSCPRG00005017249)	LDHA (ENSCPRG00005017245)	ENSCPRG00005017243	TSG101 (ENSCPRG00005017234)	SPTY2D1 (ENSCPRG00005017230)	TMEM86A (ENSCPRG00005017229)
Aves	ANCESTRAL SPECIES	2	ENSGT00390000005270	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916
African ostrich	MODERN SPECIES	408											PIK3C2A (ENSSCUG00000007303)	NUCB2 (ENSSCUG00000007308)	KCNJ11 (ENSSCUG00000007310)	ABCC8 (ENSSCUG00000007324) #20	USH1C (ENSSCUG00000007344) #21	OTOG (ENSSCUG00000007368) #22	ENSSCUG00000007406	KCNC1 (ENSSCUG00000007411)	SERGEF (ENSSCUG00000007414)	TPH1 (ENSSCUG00000007415)	SAAL1 (ENSSCUG00000007419)	ENSSCUG00000007424	HPS5 (ENSSCUG00000007427)	GTF2H1 (ENSSCUG00000007432)	LDHA (ENSSCUG00000007434)	TSG101 (ENSSCUG00000007436)
Neognathae	ANCESTRAL SPECIES	4	ENSGT00390000005270	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916
Neognathae_b	ANCESTRAL SPECIES	14	ENSGT00390000005270	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00390000005270	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00390000005270	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.t	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00390000005270	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.t	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b
Medium ground finch	MODERN SPECIES	113	COPB1 (ENSGFOG00000009147)	PSMA1 (ENSGFOG00000009164)	PDE3B (ENSGFOG00000009185)	CYP2R1 (ENSGFOG00000009306)	CALCB (ENSGFOG00000009314)	INSC (ENSGFOG00000009330)	SOX6 (ENSGFOG00000009373)	C11orf58 (ENSGFOG00000009400)	PLEKHA7 (ENSGFOG00000009416)	RPS13 (ENSGFOG00000009433)	PIK3C2A (ENSGFOG00000009443)	NUCB2 (ENSGFOG00000009474)	KCNJ11 (ENSGFOG00000009487)	ABCC8 (ENSGFOG00000009786) #20	USH1C (ENSGFOG00000014191) #21	OTOG (ENSGFOG00000014193) #22	MYOD1 (ENSGFOG00000014197)	KCNC1 (ENSGFOG00000014198)
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00390000005270	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066.t	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916
Common canary	MODERN SPECIES	3	COPB1 (ENSSCAG00000005322)	PSMA1 (ENSSCAG00000005319)	PDE3B (ENSSCAG00000005287)	CYP2R1 (ENSSCAG00000005278)	CALCB (ENSSCAG00000005276)	INSC (ENSSCAG00000005272)	SOX6 (ENSSCAG00000005255)	C11orf58 (ENSSCAG00000005235)	PLEKHA7 (ENSSCAG00000005218)	RPS13 (ENSSCAG00000005185)	PIK3C2A (ENSSCAG00000005178)	NUCB2 (ENSSCAG00000005171)	KCNJ11 (ENSSCAG00000005168)	ABCC8 (ENSSCAG00000005141) #20	USH1C (ENSSCAG00000005121) #21	OTOG (ENSSCAG00000005097) #22	ENSSCAG00000005088	MYOD1 (ENSSCAG00000005079)	KCNC1 (ENSSCAG00000005066)	SERGEF (ENSSCAG00000005048)	TPH1 (ENSSCAG00000005038)	SAAL1 (ENSSCAG00000005025)	ENSSCAG00000005016	HPS5 (ENSSCAG00000005001)	GTF2H1 (ENSSCAG00000004990)	LDHA (ENSSCAG00000004984)	ENSSCAG00000004978	TSG101 (ENSSCAG00000004960)	SPTY2D1 (ENSSCAG00000004949)	TMEM86A (ENSSCAG00000004939)	PTPN5 (ENSSCAG00000004927)
Zebra finch	MODERN SPECIES	27	ENSTGUG00000028302	PSMA1 (ENSTGUG00000008447)	PDE3B (ENSTGUG00000008479)	CYP2R1 (ENSTGUG00000008492)	CALCB (ENSTGUG00000008509)	INSC (ENSTGUG00000008514)	SOX6 (ENSTGUG00000008522)	C11orf58 (ENSTGUG00000024921)	PLEKHA7 (ENSTGUG00000008557)	RPS13 (ENSTGUG00000008572)	PIK3C2A (ENSTGUG00000008575)	NUCB2 (ENSTGUG00000008639)	KCNJ11 (ENSTGUG00000008677)	ABCC8 (ENSTGUG00000008682) #20	USH1C (ENSTGUG00000008748) #21	OTOG (ENSTGUG00000008789) #22	ENSTGUG00000008813	MYOD1 (ENSTGUG00000008814)	KCNC1 (ENSTGUG00000008821)	SERGEF (ENSTGUG00000008830)	TPH1 (ENSTGUG00000008841)	SAAL1 (ENSTGUG00000008863)	ENSTGUG00000025044	HPS5 (ENSTGUG00000008872)	ENSTGUG00000008904	LDHA (ENSTGUG00000008930)	TSG101 (ENSTGUG00000008935)	ENSTGUG00000008943	SPTY2D1 (ENSTGUG00000008968)	TMEM86A (ENSTGUG00000025382)	PTPN5 (ENSTGUG00000008983)
Flycatcher	MODERN SPECIES	24	COPB1 (ENSFALG00000000867)	PSMA1 (ENSFALG00000000841)	PDE3B (ENSFALG00000000827)	CYP2R1 (ENSFALG00000000820)	CALCB (ENSFALG00000024809)	INSC (ENSFALG00000000814)	SOX6 (ENSFALG00000000798)	C11orf58 (ENSFALG00000026715)	PLEKHA7 (ENSFALG00000000789)	RPS13 (ENSFALG00000000784)	PIK3C2A (ENSFALG00000000780)	NUCB2 (ENSFALG00000000778)	KCNJ11 (ENSFALG00000014605)	ABCC8 (ENSFALG00000000775) #20	USH1C (ENSFALG00000000770) #21	OTOG (ENSFALG00000000765) #22	ENSFALG00000028324	MYOD1 (ENSFALG00000000758)	KCNC1 (ENSFALG00000000754)	SERGEF (ENSFALG00000011059)	TPH1 (ENSFALG00000011078)	SAAL1 (ENSFALG00000011111)	ENSFALG00000024967	ENSFALG00000011119	HPS5 (ENSFALG00000011125)	GTF2H1 (ENSFALG00000011148)	LDHA (ENSFALG00000011162)	ENSFALG00000011218	SPTY2D1 (ENSFALG00000011262)	TMEM86A (ENSFALG00000011276)	PTPN5 (ENSFALG00000011286)
Great tit	MODERN SPECIES	25	PRMT3 (ENSPMJG00000008429)	DBX1 (ENSPMJG00000008433)	NAV2 (ENSPMJG00000008481)	E2F8 (ENSPMJG00000008513)	CSRP3 (ENSPMJG00000008514)	ZDHHC13 (ENSPMJG00000008515)	SOX6 (ENSPMJG00000008569)	C11orf58 (ENSPMJG00000008572)	PLEKHA7 (ENSPMJG00000008582)	RPS13 (ENSPMJG00000008585)	PIK3C2A (ENSPMJG00000008586)	NUCB2 (ENSPMJG00000008588)	KCNJ11 (ENSPMJG00000008589)	ABCC8 (ENSPMJG00000008592) #20	USH1C (ENSPMJG00000008603) #21	OTOG (ENSPMJG00000008606) #22	ENSPMJG00000008624	MYOD1 (ENSPMJG00000008625)	KCNC1 (ENSPMJG00000008627)	SERGEF (ENSPMJG00000008648)	TPH1 (ENSPMJG00000008649)	SAAL1 (ENSPMJG00000008652)	HPS5 (ENSPMJG00000008665)	GTF2H1 (ENSPMJG00000008670)	LDHA (ENSPMJG00000008676)	TSG101 (ENSPMJG00000008680)	ENSPMJG00000008681	SPTY2D1 (ENSPMJG00000008684)	TMEM86A (ENSPMJG00000008704)	PTPN5 (ENSPMJG00000008706)	ENSPMJG00000008719
Neognathae_c	ANCESTRAL SPECIES	17	ENSGT00390000005270	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916
Kakapo	MODERN SPECIES	21	PSMA1 (ENSSHBG00005013874)	PDE3B (ENSSHBG00005013797)	CYP2R1 (ENSSHBG00005013764)	CALCB (ENSSHBG00005013758)	INSC (ENSSHBG00005013739)	SOX6 (ENSSHBG00005013226)	C11orf58 (ENSSHBG00005013164)	PLEKHA7 (ENSSHBG00005012968)	RPS13 (ENSSHBG00005012856)	ENSSHBG00005012355	ENSSHBG00005012272	NUCB2 (ENSSHBG00005000815)	KCNJ11 (ENSSHBG00005000811)	ABCC8 (ENSSHBG00005000788) #20	USH1C (ENSSHBG00005000692) #21	OTOG (ENSSHBG00005004083) #22	ENSSHBG00005004063	MYOD1 (ENSSHBG00005004057)	KCNC1 (ENSSHBG00005004052)	SERGEF (ENSSHBG00005004045)	TPH1 (ENSSHBG00005004036)	SAAL1 (ENSSHBG00005004015)	ENSSHBG00005004000	HPS5 (ENSSHBG00005003984)	GTF2H1 (ENSSHBG00005003950)	LDHA (ENSSHBG00005003929)	TSG101 (ENSSHBG00005003912)	UEVLD (ENSSHBG00005003887)	SPTY2D1 (ENSSHBG00005003868)	TMEM86A (ENSSHBG00005003850)	PTPN5 (ENSSHBG00005003830)
Golden eagle	MODERN SPECIES	7	PSMA1 (ENSACCG00020013012)	PDE3B (ENSACCG00020012978)	CYP2R1 (ENSACCG00020012873)	CALCB (ENSACCG00020012823)	INSC (ENSACCG00020012787)	SOX6 (ENSACCG00020012746)	C11orf58 (ENSACCG00020012713)	PLEKHA7 (ENSACCG00020012653)	ENSACCG00020012617	RPS13 (ENSACCG00020012604)	PIK3C2A (ENSACCG00020012476)	NUCB2 (ENSACCG00020012398)	KCNJ11 (ENSACCG00020012371)	ABCC8 (ENSACCG00020012283) #20	USH1C (ENSACCG00020012229) #21	OTOG (ENSACCG00020012135) #22	ENSACCG00020012030	MYOD1 (ENSACCG00020012010)	KCNC1 (ENSACCG00020011992)	SERGEF (ENSACCG00020011956)	TPH1 (ENSACCG00020011925)	SAAL1 (ENSACCG00020011891)	ENSACCG00020011849	HPS5 (ENSACCG00020011823)	GTF2H1 (ENSACCG00020011784)	LDHA (ENSACCG00020011744)	ENSACCG00020011654	SPTY2D1 (ENSACCG00020011558)	TMEM86A (ENSACCG00020011544)	PTPN5 (ENSACCG00020011520)	ENSACCG00020011450
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00390000005270	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000153903.a.b.b	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b
Anatidae	ANCESTRAL SPECIES	33	ENSGT00390000005270	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a.b	ENSGT00940000153962.a	ENSGT01050000244951.a.b.a.a	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00390000002169	ENSGT00530000063472.b.b.a.b	ENSGT00940000155960.b	ENSGT00390000006758.b	ENSGT00940000157402
Duck	MODERN SPECIES	23	TUB (ENSAPLG00000013637)	RRAS2 (ENSAPLG00000019435)	COPB1 (ENSAPLG00000007005)	PSMA1 (ENSAPLG00000007846)	CALCB (ENSAPLG00000008604)	INSC (ENSAPLG00000008621)	SOX6 (ENSAPLG00000008744)	C11orf58 (ENSAPLG00000018784)	PLEKHA7 (ENSAPLG00000008901)	RPS13 (ENSAPLG00000011983)	PIK3C2A (ENSAPLG00000010801)	NUCB2 (ENSAPLG00000010426)	KCNJ11 (ENSAPLG00000021853)	ABCC8 (ENSAPLG00000009025) #20	USH1C (ENSAPLG00000008735) #21	OTOG (ENSAPLG00000008072) #22	MYOD1 (ENSAPLG00000005673)	KCNC1 (ENSAPLG00000005789)	SERGEF (ENSAPLG00000005876)	ENSAPLG00000006128	CYB5R2 (ENSAPLG00000006316)	PPFIBP2 (ENSAPLG00000006571)	OLFML1 (ENSAPLG00000006707)	SYT9 (ENSAPLG00000006733)	SPON1 (ENSAPLG00000006849)	C11orf91 (ENSAPLG00000017898)	KIAA1549L (ENSAPLG00000008459)	HIPK3 (ENSAPLG00000007742)	CSTF3 (ENSAPLG00000007217)	ENSAPLG00000017408	ENSAPLG00000026679
Pink-footed goose	MODERN SPECIES	33	PSMA1 (ENSABRG00000013833)	PDE3B (ENSABRG00000013841)	CYP2R1 (ENSABRG00000013865)	CALCB (ENSABRG00000013884)	INSC (ENSABRG00000013914)	ENSABRG00000013975	SOX6 (ENSABRG00000013981)	C11orf58 (ENSABRG00000013996)	PLEKHA7 (ENSABRG00000014016)	RPS13 (ENSABRG00000014031)	PIK3C2A (ENSABRG00000014041)	NUCB2 (ENSABRG00000014061)	KCNJ11 (ENSABRG00000014070)	ABCC8 (ENSABRG00000014379) #20	USH1C (ENSABRG00000017259) #21	OTOG (ENSABRG00000017284) #22	ENSABRG00000017331	MYOD1 (ENSABRG00000017333)	KCNC1 (ENSABRG00000017337)	SERGEF (ENSABRG00000017340)	ENSABRG00000017358	CYB5R2 (ENSABRG00000017412)	PPFIBP2 (ENSABRG00000017439)	OLFML1 (ENSABRG00000017498)	SYT9 (ENSABRG00000017501)	SPON1 (ENSABRG00000017512)	ENSABRG00000017553	KIAA1549L (ENSABRG00000017560)	HIPK3 (ENSABRG00000017587)	CSTF3 (ENSABRG00000017719)	TCP11L1 (ENSABRG00000017828)
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00390000005270	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916
Japanese quail	MODERN SPECIES	23	COPB1 (ENSCJPG00005004731)	PSMA1 (ENSCJPG00005004737)	PDE3B (ENSCJPG00005004739)	CYP2R1 (ENSCJPG00005004751)	CALCB (ENSCJPG00005004753)	INSC (ENSCJPG00005004754)	SOX6 (ENSCJPG00005004765)	C11orf58 (ENSCJPG00005005288)	PLEKHA7 (ENSCJPG00005005307)	RPS13 (ENSCJPG00005006391)	PIK3C2A (ENSCJPG00005006394)	NUCB2 (ENSCJPG00005006615)	KCNJ11 (ENSCJPG00005006618)	ABCC8 (ENSCJPG00005006650) #20	USH1C (ENSCJPG00005010751) #21	OTOG (ENSCJPG00005010752) #22	ENSCJPG00005010753	MYOD1 (ENSCJPG00005010754)	ENSCJPG00005010755	ENSCJPG00005010756	ENSCJPG00005010757	NAP1L4 (ENSCJPG00005010758)	CARS1 (ENSCJPG00005010761)	ENSCJPG00005010762	OSBPL5 (ENSCJPG00005010764)	ENSCJPG00005010766	PTPN5 (ENSCJPG00005010769)	TMEM86A (ENSCJPG00005010770)	SPTY2D1 (ENSCJPG00005010771)	ENSCJPG00005010772	TSG101 (ENSCJPG00005010773)
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00390000005270	ENSGT00550000074855	ENSGT00940000159336	ENSGT00940000158305	ENSGT00940000156267	ENSGT00390000001511	ENSGT00940000156433.B	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201.j	ENSGT00940000164122	ENSGT00940000154133.A	ENSGT00390000007101.d.b	ENSGT00940000159916	ENSGT00940000156870
Chicken	MODERN SPECIES	34	PSMA1 (ENSGALG00010023624)	PDE3B (ENSGALG00010023636)	CYP2R1 (ENSGALG00010023724)	CALCA (ENSGALG00010023759)	INSC (ENSGALG00010022949)	SOX6 (ENSGALG00010023131)	C11orf58 (ENSGALG00010023144)	PLEKHA7 (ENSGALG00010023181)	RPS13 (ENSGALG00010023199)	PIK3C2A (ENSGALG00010023209)	NUCB2 (ENSGALG00010023238)	KCNJ11 (ENSGALG00010023268)	ABCC8 (ENSGALG00010023276) #20	ENSGALG00010023291	USH1C (ENSGALG00010025330) #21	OTOG (ENSGALG00010024347) #22	FTL (ENSGALG00010024360)	MYOD1 (ENSGALG00010024369)	KCNC1 (ENSGALG00010024401)	SERGEF (ENSGALG00010024423)	TPH1 (ENSGALG00010026924)	SAAL1 (ENSGALG00010024428)	SAA (ENSGALG00010024441)	HPS5 (ENSGALG00010024454)	GTF2H1 (ENSGALG00010024469)	LDHA (ENSGALG00010024472)	UEVLD (ENSGALG00010024496)	SPTY2D1 (ENSGALG00010024513)	TMEM86A (ENSGALG00010024532)	PTPN5 (ENSGALG00010024540)	PTPRJ (ENSGALG00010024013)
Turkey	DUPLICATION
Turkey	MODERN SPECIES	25	ENSMGAG00000007465	ENSMGAG00000021944	ENSMGAG00000020292	ENSMGAG00000007372	ENSMGAG00000007354	ENSMGAG00000021100	ENSMGAG00000007279	ENSMGAG00000022734	ENSMGAG00000017600	ENSMGAG00000007273	ENSMGAG00000007226	ENSMGAG00000018777	ENSMGAG00000007219	MYOD1 (ENSMGAG00000007210)	ENSMGAG00000007193	ENSMGAG00000017195 #22	ENSMGAG00000021863 #22	ENSMGAG00000020676 #20	ENSMGAG00000006967 #20	ENSMGAG00000006904	ENSMGAG00000006961	ENSMGAG00000021792	ENSMGAG00000006883	ENSMGAG00000019220	ENSMGAG00000006867	ENSMGAG00000022245	ENSMGAG00000018488	ENSMGAG00000022642	ENSMGAG00000006814	MOB2 (ENSMGAG00000008518)	BRSK2 (ENSMGAG00000008533)
Turkey	MODERN SPECIES	25	ENSMGAG00000021944	ENSMGAG00000020292	ENSMGAG00000007372	ENSMGAG00000007354	ENSMGAG00000021100	ENSMGAG00000007279	ENSMGAG00000022734	ENSMGAG00000017600	ENSMGAG00000007273	ENSMGAG00000007226	ENSMGAG00000018777	ENSMGAG00000007219	MYOD1 (ENSMGAG00000007210)	ENSMGAG00000007193	ENSMGAG00000017195 #22	ENSMGAG00000021863 #22	ENSMGAG00000020676 #20	ENSMGAG00000006967 #20	ENSMGAG00000006904	ENSMGAG00000006961	ENSMGAG00000021792	ENSMGAG00000006883	ENSMGAG00000019220	ENSMGAG00000006867	ENSMGAG00000022245	ENSMGAG00000018488	ENSMGAG00000022642	ENSMGAG00000006814	MOB2 (ENSMGAG00000008518)	BRSK2 (ENSMGAG00000008533)	TOLLIP (ENSMGAG00000008570)
Anura	ANCESTRAL SPECIES	163												ENSGT00940000163348.e	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000156912	ENSGT00940000160684	ENSGT00950000182885.A.a	ENSGT00390000004737.b.b	ENSGT00940000155818	ENSGT00390000015066	ENSGT00940000153201	ENSGT00940000153903.a.a	ENSGT00940000154133.A	ENSGT00940000153903.a.b.b	ENSGT00940000164956	ENSGT00390000007101.d.b	ENSGT00940000159916	ENSGT00390000006347.a
Frog	MODERN SPECIES	4	cars1 (ENSXETG00000021868)	ENSXETG00000040706	PTPN5 (ENSXETG00000042778)	ENSXETG00000041841	ENSXETG00000047729	ENSXETG00000044019	ENSXETG00000047278	spty2d1 (ENSXETG00000043007)	uevld (ENSXETG00000008509)	ldha (ENSXETG00000041431)	tsg101 (ENSXETG00000046442)	ush1c (ENSXETG00000043793) #21	ENSXETG00000048951	ENSXETG00000044994	ENSXETG00000049215	OTOG (ENSXETG00000048795) #22	MYOD1 (ENSXETG00000046866)	kcnc1 (ENSXETG00000014391)	sergef (ENSXETG00000014410)	ENSXETG00000042377	ENSXETG00000048806	saal1 (ENSXETG00000018990)	gtf2h1 (ENSXETG00000018992)	abcc8 (ENSXETG00000046120) #20	ENSXETG00000046872	ENSXETG00000045579	XB995201 [provisional] (ENSXETG00000022477)	ENSXETG00000041634	ENSXETG00000037097	ENSXETG00000047592	ENSXETG00000042912
Leishan spiny toad	MODERN SPECIES	1	ENSLLEG00000015610	PRMT3 (ENSLLEG00000015222)	SLC6A5 (ENSLLEG00000014934)	NELL1 (ENSLLEG00000013886)	ANO5 (ENSLLEG00000012984)	ENSLLEG00000012910	SLC17A6 (ENSLLEG00000012588)	ENSLLEG00000012539	GAS2 (ENSLLEG00000012505)	ENSLLEG00000012464	NDUFB7 (ENSLLEG00000012433)	ENSLLEG00000012269	KCNJ11 (ENSLLEG00000012239)	ABCC8 (ENSLLEG00000011143) #20	ENSLLEG00000010952 #21	ENSLLEG00000010818 #22	MYOD1 (ENSLLEG00000010740)	ENSLLEG00000010621	SERGEF (ENSLLEG00000010129)	TPH1 (ENSLLEG00000009964)	SAAL1 (ENSLLEG00000009836)	ENSLLEG00000009816	HPS5 (ENSLLEG00000009676)	GTF2H1 (ENSLLEG00000009515)	LDHA (ENSLLEG00000009417)	ENSLLEG00000009178	ENSLLEG00000008744	SPTY2D1 (ENSLLEG00000030067)	ENSLLEG00000030060	ENSLLEG00000030053	TMEM86A (ENSLLEG00000030039)
Coelacanth	MODERN SPECIES	288				SOX6 (ENSLACG00000017676)	C11orf58 (ENSLACG00000017536)	PLEKHA7 (ENSLACG00000017451)	rps13 (ENSLACG00000017174)	PIK3C2A (ENSLACG00000017040)	rps13 (ENSLACG00000017012)	NUCB2 (ENSLACG00000016943)	ENSLACG00000016883	ENSLACG00000016827	KCNJ11 (ENSLACG00000016707)	ABCC8 (ENSLACG00000016365) #20	USH1C (ENSLACG00000016027) #21	OTOG (ENSLACG00000015455) #22	ENSLACG00000014612	zgc:172145 (ENSLACG00000014515)	MYOD1 (ENSLACG00000014430)	KCNC1 (ENSLACG00000013857)	SERGEF (ENSLACG00000012618)	TPH1 (ENSLACG00000012424)	SAAL1 (ENSLACG00000011733)	HPS5 (ENSLACG00000011372)	GTF2H1 (ENSLACG00000011123)	LDHA (ENSLACG00000010504)	TSG101 (ENSLACG00000010221)	ENSLACG00000009769	SPTY2D1 (ENSLACG00000009475)	TMEM86A (ENSLACG00000008872)	IGSF22 (ENSLACG00000008077)
Actinopterygii	ANCESTRAL SPECIES	36	ENSGT00390000001511	ENSGT00950000182939.b.b	ENSGT00940000156433.B	ENSGT01030000235062	ENSGT00390000000687	ENSGT00940000155817.a.a	ENSGT00940000154404.a	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a	ENSGT00530000064489	ENSGT01060000250538	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01050000244900.a.a.a.a.a	ENSGT00390000009310	ENSGT00940000166133	ENSGT00390000003368	ENSGT00970000193609	ENSGT00940000165906	ENSGT00940000158152	ENSGT00940000164224	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00940000160210
Reedfish	MODERN SPECIES	353																ENSECRG00000017830 #22
Neopterygii	ANCESTRAL SPECIES	79													ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000158175	ENSGT01030000234555.a.a.b.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01050000244900.a.a.a.a.a	ENSGT00390000009310	ENSGT00940000166133	ENSGT00390000003368	ENSGT00970000193609	ENSGT00940000165906	ENSGT00940000158152	ENSGT00940000164224	ENSGT00940000157504	ENSGT00390000007725.A.b
Spotted gar	MODERN SPECIES	666	cpt1aa (ENSLOCG00000001740)	ENSLOCG00000001786	igf2b (ENSLOCG00000001806)	mrpl23 (ENSLOCG00000001825)	th (ENSLOCG00000001834)	ENSLOCG00000001862	uevld (ENSLOCG00000001881)	spty2d1 (ENSLOCG00000001901)	tmem86a (ENSLOCG00000001930)	IGSF22 (ENSLOCG00000001945)	B4GALNT4 (ENSLOCG00000001959)	ABTB2 (ENSLOCG00000001988)	kcnj11 (ENSLOCG00000002016)	abcc8 (ENSLOCG00000002032) #20	ush1c (ENSLOCG00000002073) #21	OTOG (ENSLOCG00000002110) #22	ENSLOCG00000002142	zgc:172145 (ENSLOCG00000002153)	MYOD1 (ENSLOCG00000002164)	tnnt3a (ENSLOCG00000002181)	ENSLOCG00000002207	ENSLOCG00000017320	tnni2a.4 (ENSLOCG00000002237)	SYT8 (ENSLOCG00000002263)	ENSLOCG00000002283	ctsd (ENSLOCG00000002297)	ENSLOCG00000002337	drd4a (ENSLOCG00000002345)	deaf1 (ENSLOCG00000002360)	BET1L (ENSLOCG00000002376)	ric8a (ENSLOCG00000002406)
Osteoglossocephalai	ANCESTRAL SPECIES	105	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT01060000248595.b.a.b.a.n.b	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916	ENSGT00940000160004	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000158477.a.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00950000182959.b.a.b	ENSGT00940000158477.a.b	ENSGT00940000167812	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234858	ENSGT00940000160892
Osteoglossiformes	ANCESTRAL SPECIES	63	ENSGT00390000007739	ENSGT00940000160745	ENSGT00940000164715	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b.a	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916.d	ENSGT00940000160004	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626 #20	ENSGT00950000183002.A #21	ENSGT00940000157490 #22	ENSGT00920000149457	ENSGT00950000182959.b.b	ENSGT00940000158477.a.a	ENSGT00940000167812.a	ENSGT00940000153901.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234858	ENSGT00940000160892	ENSGT00390000017767.a.b	ENSGT00940000155733.a.a	ENSGT00940000164955.a	ENSGT00940000162463	ENSGT00940000160974.b.b	ENSGT00940000159701
P. kingsleyae	MODERN SPECIES	38	mrpl23 (ENSPKIG00000001102)	igf2b (ENSPKIG00000001127)	ENSPKIG00000001158	CPT1A (ENSPKIG00000001242)	cars1 (ENSPKIG00000001391)	nap1l4b (ENSPKIG00000001515)	phlda2 (ENSPKIG00000001555)	OSBPL5 (ENSPKIG00000001623)	ENSPKIG00000001750	PTPN5 (ENSPKIG00000001814)	dusp8a (ENSPKIG00000001877)	MOB2 (ENSPKIG00000001948)	kcnj11 (ENSPKIG00000001997)	abcc8 (ENSPKIG00000002041) #20	ush1c (ENSPKIG00000002131) #21	OTOG (ENSPKIG00000002227) #22	zgc:172145 (ENSPKIG00000002339)	MYOD1 (ENSPKIG00000002354)	TNNT3 (ENSPKIG00000002402)	ENSPKIG00000002481	ENSPKIG00000002526	ENSPKIG00000002535	TNNI2 (ENSPKIG00000002556)	TNNI2 (ENSPKIG00000002585)	tnni2a.2 (ENSPKIG00000002613)	TNNI2 (ENSPKIG00000002626)	SYT8 (ENSPKIG00000002642)	ENSPKIG00000002661	ctsd (ENSPKIG00000002678)	ENSPKIG00000002707	DRD4 (ENSPKIG00000002751)
Asian bonytongue	MODERN SPECIES	20	th (ENSSFOG00015002530)	mrpl23 (ENSSFOG00015024842)	ENSSFOG00015031340	ENSSFOG00015002434	CPT1A (ENSSFOG00015002348)	cars1 (ENSSFOG00015002202)	nap1l4b (ENSSFOG00015002142)	phlda2 (ENSSFOG00015002113)	OSBPL5 (ENSSFOG00015002010)	PTPN5 (ENSSFOG00015001826)	dusp8a (ENSSFOG00015025183)	MOB2 (ENSSFOG00015001705)	kcnj11 (ENSSFOG00015025143)	abcc8 (ENSSFOG00015001504) #20	ush1c (ENSSFOG00015001489) #21	OTOG (ENSSFOG00015025460) #22	zgc:172145 (ENSSFOG00015001401)	myod1 (ENSSFOG00015001375)	TNNT3 (ENSSFOG00015001321)	ENSSFOG00015001312	ENSSFOG00015001301	tnni2a.4 (ENSSFOG00015001189)	tnni2a.2 (ENSSFOG00015001029)	ENSSFOG00015000969	SYT8 (ENSSFOG00015000963)	ENSSFOG00015000957	ctsd (ENSSFOG00015000892)	ENSSFOG00015000887	antkmt (ENSSFOG00015026035)	IFT140 (ENSSFOG00015000759)	cstpp1 (ENSSFOG00015000701)
Clupeocephala	ANCESTRAL SPECIES	564																ENSGT00940000157490 #22	ENSGT00950000182959.b.b	ENSGT00940000158477.a.a	ENSGT01030000234588.b.b.b.b.a.b.b
Otomorpha	ANCESTRAL SPECIES	542																ENSGT00940000157490 #22	ENSGT00950000182959.b.a.a	ENSGT00950000182959.b.a.b	ENSGT00940000158477.a.b.b	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b
Clupeiformes	ANCESTRAL SPECIES	541																ENSGT00940000157490 #22	ENSGT00950000182959.b.a.a	ENSGT00950000182959.b.a.b	ENSGT00940000158477.a.b.b	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b
Atlantic herring	MODERN SPECIES	22	dkk3a (ENSCHAG00000017988)	MICAL2 (ENSCHAG00000017792)	atpv0e2 (ENSCHAG00000017756)	cars1 (ENSCHAG00000015312)	nap1l4b (ENSCHAG00000015163)	PHLDA2 (ENSCHAG00000015146)	PHLDA2 (ENSCHAG00000015121)	slc22a18 (ENSCHAG00000015000)	OSBPL5 (ENSCHAG00000013553)	ENSCHAG00000013402	PTPN5 (ENSCHAG00000013347)	DUSP8 (ENSCHAG00000013334)	mob2b (ENSCHAG00000013224)	KCNJ11 (ENSCHAG00000013212)	ABCC8 (ENSCHAG00000005413) #20	OTOG (ENSCHAG00000004569) #22	MYOD1 (ENSCHAG00000004523)	tnnt3b (ENSCHAG00000004458)	ENSCHAG00000004444	ENSCHAG00000004434	tnni2b.1 (ENSCHAG00000004290)	ENSCHAG00000004279	ENSCHAG00000004256	ENSCHAG00000004224	ENSCHAG00000004218	DBNDD1 (ENSCHAG00000004207)	ENSCHAG00000004200	ENSCHAG00000002366	def8 (ENSCHAG00000002070)	ENSCHAG00000002030	mc1r (ENSCHAG00000002013)
Denticle herring	MODERN SPECIES	7	ENSDCDG00000026966	insyn1 (ENSDCDG00000026965)	cd276 (ENSDCDG00000026962)	ubl7b (ENSDCDG00000026959)	SHF (ENSDCDG00000026956)	ENSDCDG00000026953	ENSDCDG00000026948	ube2q1 (ENSDCDG00000026915)	CHRNB4 (ENSDCDG00000026897)	CHRNA3 (ENSDCDG00000026890)	ENSDCDG00000026881	ENSDCDG00000026877	chrna5 (ENSDCDG00000026872)	ENSDCDG00000026869	ABCC8 (ENSDCDG00000026610) #20	OTOG (ENSDCDG00000026583) #22	myod1 (ENSDCDG00000026580)	tnnt3b (ENSDCDG00000026571)	ENSDCDG00000026556	ENSDCDG00000026554	ENSDCDG00000026552	tnni2b.1 (ENSDCDG00000026551)	tnni2b.2 (ENSDCDG00000026548)	galns (ENSDCDG00000026497)	trappc2l (ENSDCDG00000026484)	PABPN1L (ENSDCDG00000026482)	CBFA2T3 (ENSDCDG00000026480)	ACSF3 (ENSDCDG00000026303)	pacsin3 (ENSDCDG00000026254)	FADD (ENSDCDG00000026252)	ano1a (ENSDCDG00000022511)
Otophysi	ANCESTRAL SPECIES	62														ENSGT00940000159916	ENSGT00940000160333	ENSGT00940000157490 #22	ENSGT00940000158477.a.b.b	ENSGT01030000234990	ENSGT00940000177294	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000157433	ENSGT00940000155889.c	ENSGT00940000158446	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.a	ENSGT00940000156152.e.a.a	ENSGT00940000159848	ENSGT00940000156124.c.a	ENSGT00940000166946
Characiphysae	ANCESTRAL SPECIES	27	ENSGT00390000008044	ENSGT00940000159726	ENSGT01100000263512.b.b.a	ENSGT00390000003231.b	ENSGT00940000166110	ENSGT00940000155009.b	ENSGT00940000155850	ENSGT00940000162114	ENSGT00390000015719.d.c	ENSGT01090000260076.b.b.a	ENSGT00950000182852.A.a.b.c	ENSGT00530000063604.A	ENSGT00940000162611.a.a.a	ENSGT00940000159916	ENSGT00940000160333	ENSGT00940000157490 #22	ENSGT00940000158477.a.b.b	ENSGT01030000234990	ENSGT00940000177294	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000157433	ENSGT00940000155889.c	ENSGT00940000158446	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.a	ENSGT00940000156152.e.a.a	ENSGT00940000159848	ENSGT00940000156124.c.a	ENSGT00940000166946
Characiphysae_b	ANCESTRAL SPECIES	28	ENSGT00940000155081.D	ENSGT00940000162809	ENSGT00950000183136.b.a.a	ENSGT00940000163741	ENSGT00940000160615.a.b	ENSGT00940000160615.b.b.a	ENSGT00940000169924	ENSGT00940000155080	ENSGT00390000002970	ENSGT00390000013448.a.a	ENSGT00570000079239	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000159916	ENSGT00940000160333	ENSGT00940000157490 #22	ENSGT00940000158477.a.b.b	ENSGT01030000234990	ENSGT00940000177294	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000157433	ENSGT00940000155889.c	ENSGT00940000158446	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.a	ENSGT00940000156152.e.a.a	ENSGT00940000159848	ENSGT00940000156124.c.a	ENSGT00940000166946
Characoidei	ANCESTRAL SPECIES	24						ENSGT00940000169924	ENSGT00940000155080	ENSGT00390000002970	ENSGT00390000013448.a.a	ENSGT00570000079239	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000159916	ENSGT00940000156870	ENSGT00940000160333	ENSGT00940000157490 #22	ENSGT00940000158477.a.b.b	ENSGT01030000234990	ENSGT00940000177294	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000157433	ENSGT01100000263547.a.a.b.a.a.a.b.b	ENSGT00940000155889.c	ENSGT00940000158446	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.a	ENSGT00940000156152.e.a.a	ENSGT00940000159848	ENSGT00940000156124.c.a
Red-bellied piranha	MODERN SPECIES	158								cd59 (ENSPNAG00000024967)	fbxo3 (ENSPNAG00000024996)	FILIP1L (ENSPNAG00000025004)	hoga1 (ENSPNAG00000025051)	ENSPNAG00000005752	PTPN5 (ENSPNAG00000025075)	ptprja (ENSPNAG00000025180)	slc22a18 (ENSPNAG00000003886)	OTOG (ENSPNAG00000005639) #22	tnnt3b (ENSPNAG00000005374)	ENSPNAG00000003920	tnni2b.1 (ENSPNAG00000025492)	SLC8B1 (ENSPNAG00000006256)	ENSPNAG00000025543	ENSPNAG00000025564	ENSPNAG00000025606	SNX1 (ENSPNAG00000025625)	acp2 (ENSPNAG00000025680)	ambra1a (ENSPNAG00000005343)	CHRM4 (ENSPNAG00000025805)	mdka (ENSPNAG00000006852)	DGKZ (ENSPNAG00000005259)	creb3l1 (ENSPNAG00000025939)	phf21aa (ENSPNAG00000025960)
Mexicana tetra	MODERN SPECIES	33	xk (ENSAMXG00000041630)	cybb (ENSAMXG00000008637)	dynlt3 (ENSAMXG00000029995)	rpgrb (ENSAMXG00000037635)	plekha3 (ENSAMXG00000008673)	ENSAMXG00000008687	nr0b1 (ENSAMXG00000008711)	il1rapl1b (ENSAMXG00000008715)	FILIP1L (ENSAMXG00000021602)	hoga1 (ENSAMXG00000021600)	ENSAMXG00000038272	ENSAMXG00000021599	PTPN5 (ENSAMXG00000021598)	ptprja (ENSAMXG00000021591)	slc22a18 (ENSAMXG00000021590)	OTOG (ENSAMXG00000021582) #22	tnnt3b (ENSAMXG00000021580)	ENSAMXG00000040476	ENSAMXG00000042231	ENSAMXG00000021578	tnni2b.1 (ENSAMXG00000021577)	SLC8B1 (ENSAMXG00000031619)	ENSAMXG00000021573	SNX1 (ENSAMXG00000037031)	acp2 (ENSAMXG00000021570)	CHRM4 (ENSAMXG00000021569)	mdka (ENSAMXG00000037017)	ENSAMXG00000032609	DGKZ (ENSAMXG00000021549)	ENSAMXG00000035733	ENSAMXG00000043904
Electric eel	MODERN SPECIES	154											hoga1 (ENSEEEG00000006148)	ENSEEEG00000006150	ENSEEEG00000006151	PTPN5 (ENSEEEG00000006152)	slc22a18 (ENSEEEG00000006153)	OTOG (ENSEEEG00000006154) #22	tnnt3b (ENSEEEG00000006155)	ENSEEEG00000006162	ENSEEEG00000006163	tnni2b.1 (ENSEEEG00000006164)	SLC8B1 (ENSEEEG00000006165)	SNX1 (ENSEEEG00000006183)	acp2 (ENSEEEG00000006752)	ENSEEEG00000006755	ENSEEEG00000006756	cflara (ENSEEEG00000006760)	tmem169a (ENSEEEG00000006764)	ENSEEEG00000006765	pecr (ENSEEEG00000006768)	ENSEEEG00000006775	ENSEEEG00000006781
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	19	pir (ENSIPUG00000014683)	GRPR (ENSIPUG00000014766)	xk (ENSIPUG00000014777)	CYBB (ENSIPUG00000014792)	dynlt3 (ENSIPUG00000014842)	rpgrb (ENSIPUG00000014882)	PLEKHA3 (ENSIPUG00000014915)	ENSIPUG00000014963	nr0b1 (ENSIPUG00000014999)	il1rapl1 (ENSIPUG00000015014)	filip1l (ENSIPUG00000015100)	hoga1 (ENSIPUG00000015118)	lcor (ENSIPUG00000015148)	PTPN5 (ENSIPUG00000015168)	Slc22a18 (ENSIPUG00000015267)	OTOG (ENSIPUG00000015313) #22	tnnt3b (ENSIPUG00000015426)	slc8b1 (ENSIPUG00000015535)	acp2 (ENSIPUG00000015574)
Channel catfish	MODERN SPECIES	12	ENSIPUG00000014394	GTPBP4 (ENSIPUG00000014417)	slc39a6 (ENSIPUG00000014516)	ift57 (ENSIPUG00000014541)	cavin4a (ENSIPUG00000014631)	med17 (ENSIPUG00000014647)	ENSIPUG00000014704	urb1 (ENSIPUG00000014721)	pitrm1 (ENSIPUG00000014776)	prpf38b (ENSIPUG00000014942)	pih1d3 (ENSIPUG00000014947)	PIP4P1 (ENSIPUG00000014953)	ENSIPUG00000014984	ENSIPUG00000015018	EPHB1 (ENSIPUG00000015049)	ENSIPUG00000015078 #22	gpc1b (ENSIPUG00000015093)	ENSIPUG00000015144	ENSIPUG00000015170	ENSIPUG00000015197	ENSIPUG00000015206	ENSIPUG00000015219	ENSIPUG00000015257	ENSIPUG00000015262	SVIL (ENSIPUG00000015285)	ENSIPUG00000015358	KCNJ9 (ENSIPUG00000015376)	ENSIPUG00000015436	CDC34 (ENSIPUG00000015462)	abhd17aa (ENSIPUG00000015519)	ENSIPUG00000015591
Cyprinoidei	ANCESTRAL SPECIES	3	ENSGT00940000156086.d	ENSGT00390000013743	ENSGT00940000163397	ENSGT01030000234531.B	ENSGT00940000164582.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000159916	ENSGT00940000156870	ENSGT00940000160333	ENSGT00940000157490 #22	ENSGT00940000158477.a.b.b	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000157433	ENSGT00940000155889.c	ENSGT00940000158446	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.a	ENSGT00940000156152.e.a.a	ENSGT00940000159848	ENSGT00940000156124.c.a	ENSGT00940000166946	ENSGT00940000154348.c.b.a.b
Cyprininae	ANCESTRAL SPECIES	150	ENSGT00940000156086.d.f	ENSGT00940000163397	ENSGT01030000234531.B.a	ENSGT00390000006896.`b.a	ENSGT00940000164582.a.b	ENSGT01030000234563.b.a.a.o.b	ENSGT00390000005589.a.a.u	ENSGT00940000157318.d	ENSGT00940000154521.A	ENSGT01100000263482.F.h	ENSGT00940000157250.a	ENSGT00390000018549.i	ENSGT00940000159916.f	ENSGT00940000156870.bb.a.b	ENSGT00940000160333.b	ENSGT00940000157490 #22	ENSGT00940000158477.a.b.b.b.a.a	ENSGT00940000153901.a.b.a.f	ENSGT01030000234588.b.b.b.b.a.b.b.h.a	ENSGT00940000158477.a.b.b.a	ENSGT01030000234990.a	ENSGT00940000158477.a.b.b.b.a.b	ENSGT00940000153901.a.b.a.e	ENSGT01030000234588.b.b.b.b.a.b.b.h.b	ENSGT01030000234990.b.b	ENSGT01030000234588.b.b.b.b.a.b.b.g.a	ENSGT00940000157433.a	ENSGT00940000155889.c.c	ENSGT00940000158446.w	ENSGT00390000016223.o.b	ENSGT00940000160394.a.c
Cyprininae_a	ANCESTRAL SPECIES	2	ENSGT00940000156086.d.f	ENSGT00940000163397	ENSGT01030000234531.B.a	ENSGT00390000006896.`b.a	ENSGT00940000164582.a.b	ENSGT01030000234563.b.a.a.o.b	ENSGT00390000005589.a.a.u	ENSGT00940000157318.d	ENSGT00940000154521.A	ENSGT01100000263482.F.h	ENSGT00940000157250.a	ENSGT00390000018549.i	ENSGT00940000159916.e.b	ENSGT00940000156870.bb.a.b	ENSGT00940000160333.b	ENSGT00940000157490 #22	ENSGT00940000158477.a.b.b.b.a.a	ENSGT00940000153901.a.b.a.f	ENSGT00940000158477.a.b.b.a	ENSGT01030000234990.a	ENSGT00940000158477.a.b.b.b.a.b	ENSGT00940000153901.a.b.a.e	ENSGT01030000234990.b.b	ENSGT01030000234588.b.b.b.b.a.b.b.g.a	ENSGT00940000157433.a	ENSGT00940000155889.c.c	ENSGT00940000158446.w	ENSGT00390000016223.o.b	ENSGT00940000160394.a.c	ENSGT00390000007640.b.a.a	ENSGT00940000156152.e.a.a.a
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES		ENSCCRG00000058771	ESYT2 (ENSCCRG00000045571)	ENSCCRG00000047541	ENSCCRG00000056123	maf1b (ENSCCRG00000052020)	shrprbck1r (ENSCCRG00000034094)	SORCS2 (ENSCCRG00000004001)	grpel1 (ENSCCRG00000045066)	tada2b (ENSCCRG00000066504)	ccdc96 (ENSCCRG00000069566)	TBC1D14 (ENSCCRG00000020597)	kiaa0232 (ENSCCRG00000072478)	ENSCCRG00000058248	ptprja (ENSCCRG00000019231)	slc22a18 (ENSCCRG00000003228)	ENSCCRG00000002720 #22	tnnt3b (ENSCCRG00000002528)	ENSCCRG00000002639	ENSCCRG00000002656	tnni2b.2 (ENSCCRG00000002481)	ENSCCRG00000036692	ENSCCRG00000036705	acp2 (ENSCCRG00000036726)	ambra1a (ENSCCRG00000036765)	CHRM4 (ENSCCRG00000075300)	mdka (ENSCCRG00000041763)	DGKZ (ENSCCRG00000045328)	creb3l1 (ENSCCRG00000016787)	phf21aa (ENSCCRG00000010347)	zgc:110699 (ENSCCRG00000007128)	harbi1 (ENSCCRG00000055144)
Common carp reference	MODERN SPECIES	6	ptprn2 (ENSCCRG00000055744)	ESYT2 (ENSCCRG00000016175)	DYNC2I1 (ENSCCRG00000078207)	ENSCCRG00000068899	ENSCCRG00000053637	maf1b (ENSCCRG00000051252)	shrprbck1r (ENSCCRG00000004071)	SORCS2 (ENSCCRG00000034005)	grpel1 (ENSCCRG00000007651)	tada2b (ENSCCRG00000076351)	TBC1D14 (ENSCCRG00000045074)	kiaa0232 (ENSCCRG00000080085)	ENSCCRG00000027619	ptprja (ENSCCRG00000022622)	slc22a18 (ENSCCRG00000022637)	ENSCCRG00000073086 #22	tnnt3b (ENSCCRG00000053333)	ENSCCRG00000002518	ENSCCRG00000056847	tnni2b.2 (ENSCCRG00000036681)	ENSCCRG00000002459	ENSCCRG00000014050	acp2 (ENSCCRG00000018091)	ambra1a (ENSCCRG00000056784)	mdka (ENSCCRG00000028278)	DGKZ (ENSCCRG00000021059)	creb3l1 (ENSCCRG00000016767)	phf21aa (ENSCCRG00000016773)	harbi1 (ENSCCRG00000076161)	atg13 (ENSCCRG00000010356)	ENSCCRG00000067668
Golden-line barbel	MODERN SPECIES	135	ncapg2 (ENSSGRG00000046861)	ESYT2 (ENSSGRG00000046429)	ENSSGRG00000046426	maf1b (ENSSGRG00000046423)	shrprbck1r (ENSSGRG00000046422)	SORCS2 (ENSSGRG00000045939)	grpel1 (ENSSGRG00000045929)	tada2b (ENSSGRG00000045928)	ccdc96 (ENSSGRG00000045927)	ENSSGRG00000045926	TBC1D14 (ENSSGRG00000045923)	kiaa0232 (ENSSGRG00000045922)	PTPN5 (ENSSGRG00000045871)	ptprja (ENSSGRG00000045870)	slc22a18 (ENSSGRG00000045829)	OTOG (ENSSGRG00000045823) #22	tnnt3b (ENSSGRG00000045822)
Zebrafish	MODERN SPECIES	22	ENSDARG00000102101	ENSDARG00000036493	maf1b (ENSDARG00000036489)	shrprbck1r (ENSDARG00000059871)	SORCS2 (ENSDARG00000077465)	grpel1 (ENSDARG00000010021)	tada2b (ENSDARG00000003769)	ccdc96 (ENSDARG00000035963)	ENSDARG00000098818	ccl36.1 (ENSDARG00000105263)	TBC1D14 (ENSDARG00000003520)	kiaa0232 (ENSDARG00000052244)	PTPN5 (ENSDARG00000074866)	ptprja (ENSDARG00000033042)	slc22a18 (ENSDARG00000052271)	OTOG (ENSDARG00000068460) #22	tnnt3b (ENSDARG00000068457)	ENSDARG00000099385	tnni2b.1 (ENSDARG00000035958)	tnni2b.2 (ENSDARG00000029995)	ENSDARG00000105584	acp2 (ENSDARG00000007244)	ambra1a (ENSDARG00000008322)	CHRM4 (ENSDARG00000069254)	mdka (ENSDARG00000036036)	DGKZ (ENSDARG00000014439)	creb3l1 (ENSDARG00000015793)	phf21aa (ENSDARG00000006878)	zgc:110699 (ENSDARG00000017474)	harbi1 (ENSDARG00000036038)	atg13 (ENSDARG00000036040)
Euteleosteomorpha	ANCESTRAL SPECIES	261			ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b.e	ENSGT00530000062962.b.a.e	ENSGT00940000156926.d	ENSGT00940000153246.a.a.a.d	ENSGT00940000160967.f	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.a.a	ENSGT00940000158477.a.a	ENSGT01030000234588.b.b.b.b.a.b.b
Protacanthopterygii	ANCESTRAL SPECIES	101	ENSGT00940000168079	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914.vb	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b.e	ENSGT00530000062962.b.a.e	ENSGT00940000155744.t.a	ENSGT00940000156926.d	ENSGT00940000153246.a.a.a.d	ENSGT00940000160967.f	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.a.a	ENSGT00940000158477.a.a	ENSGT01000000216979	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000159464	ENSGT00390000001802	ENSGT00940000158707.a.a	ENSGT00940000160309.e.b	ENSGT00940000178634	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00390000004417.b	ENSGT00940000155010.a	ENSGT00940000159150	ENSGT00940000163421.a.d.a
Salmoninae	ANCESTRAL SPECIES	1	ENSGT00940000168079	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a	ENSGT00940000154914.vb	ENSGT00940000155836.B.j	ENSGT01030000234532.B.e.b.e	ENSGT00530000062962.b.a.e	ENSGT00940000155744.t.a	ENSGT00940000156926.d	ENSGT00940000153246.a.a.a.d	ENSGT00940000160967.f	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.a.a	ENSGT00940000158477.a.a	ENSGT01000000216979	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.e.b.b	ENSGT01030000234588.b.b.b.b.a.a.b.c	ENSGT00940000160892.f	ENSGT00940000155733.a.a	ENSGT00940000162463	ENSGT00940000160974.b.d	ENSGT00940000159464	ENSGT00390000001802	ENSGT00940000158707.a.a	ENSGT00940000160309.e.b
Salmoninae_a	ANCESTRAL SPECIES	85	ENSGT00390000011190	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.i.a	ENSGT00940000154914.vb	ENSGT00940000155836.B.j	ENSGT01030000234532.B.e.b.e	ENSGT00530000062962.b.a.e	ENSGT00940000155744.t.a	ENSGT00940000156926.d	ENSGT00940000153246.a.a.a.d	ENSGT00940000160967.f	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.a.a	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.b.b	ENSGT00940000159464	ENSGT00390000001802	ENSGT00940000158707.a.a	ENSGT00940000160309.e.b	ENSGT00390000004215.a.b.b.c.a.b.a.c.b	ENSGT00390000004417.b	ENSGT01010000223078	ENSGT00940000155024.a.b.c.b.a.b	ENSGT00940000164815.b
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00390000011190	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.i.a	ENSGT00940000154914.vb	ENSGT00940000155836.B.j	ENSGT01030000234532.B.e.b.e	ENSGT00530000062962.b.a.e	ENSGT00940000155744.t.a	ENSGT00940000156926.d	ENSGT00940000153246.a.a.a.d	ENSGT00940000160967.f	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00940000159464	ENSGT00390000001802	ENSGT00940000158707.a.a	ENSGT00940000160309.e.b.d	ENSGT00390000004215.a.b.b.c.a.b.a.c.b	ENSGT00390000004417.b	ENSGT01010000223078.b	ENSGT01010000223078.a	ENSGT01010000222687.A.a	ENSGT00940000155024.a.b.c.b.a.b	ENSGT00940000164815.b	ENSGT00940000158999.l	ENSGT00940000181447	ENSGT01060000252812	ENSGT00390000014572
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000050671	crybgx (ENSOMYG00000048390)	lctla (ENSOMYG00000056022)	tipin (ENSOMYG00000074288)	dis3l (ENSOMYG00000052777)	ENSOMYG00000062709	RAB11A (ENSOMYG00000049890)	DENND4A (ENSOMYG00000076284)	SLC24A1 (ENSOMYG00000004858)	HACD3 (ENSOMYG00000059785)	ENSOMYG00000023825	ENSOMYG00000004974	ENSOMYG00000050119	ENSOMYG00000005006	ENSOMYG00000005082	ENSOMYG00000060149 #22	ENSOMYG00000063706	ENSOMYG00000069614	myod1 (ENSOMYG00000029242)	TNNT3 (ENSOMYG00000049303)	ENSOMYG00000055514	ENSOMYG00000029082	ENSOMYG00000057374	ENSOMYG00000029399	ENSOMYG00000030016	ENSOMYG00000030025	ENSOMYG00000029435	CTSD (ENSOMYG00000029741)	ENSOMYG00000050352	ENSOMYG00000072011	ENSOMYG00000030266
Rainbow trout	MODERN SPECIES	18	crybgx (ENSOMYG00000049421)	lctla (ENSOMYG00000004788)	tipin (ENSOMYG00000050576)	dis3l (ENSOMYG00000048031)	ENSOMYG00000021812	ENSOMYG00000074521	RAB11A (ENSOMYG00000026657)	DENND4A (ENSOMYG00000065265)	SLC24A1 (ENSOMYG00000004910)	HACD3 (ENSOMYG00000040606)	ENSOMYG00000074482	ENSOMYG00000054709	ENSOMYG00000062139	ENSOMYG00000061598	ENSOMYG00000076821	ENSOMYG00000040832 #22	ENSOMYG00000052295	myod (ENSOMYG00000061213)	ENSOMYG00000014317	ENSOMYG00000051029	ENSOMYG00000060665	ENSOMYG00000029106	ENSOMYG00000067636	ENSOMYG00000070828	ENSOMYG00000029425	ENSOMYG00000058923	ENSOMYG00000057894	ENSOMYG00000077868	ENSOMYG00000054869	ENSOMYG00000062350	ENSOMYG00000059180
Oncorhynchus_a	ANCESTRAL SPECIES	106	ENSGT00940000158441	ENSGT00510000046704.b.b.b	ENSGT00940000157324.l	ENSGT00390000011190	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT01030000234532.B.e.b.e	ENSGT00530000062962.b.a.e	ENSGT00940000155744.t.a	ENSGT00940000156926.d	ENSGT00940000153246.a.a.a.d	ENSGT00940000160967.f	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00940000159464	ENSGT00390000001802	ENSGT00940000158707.a.a	ENSGT00940000160309.e.b.d	ENSGT00390000004215.a.b.b.c.a.b.a.c.b	ENSGT00390000004417.b	ENSGT01010000223078.b	ENSGT01010000223078.a	ENSGT01010000222687.A.a
Coho salmon	MODERN SPECIES	32	lctla (ENSOKIG00005040258)	ENSOKIG00005040323	dis3l (ENSOKIG00005040437)	rab11a (ENSOKIG00005041589)	ENSOKIG00005041640	ENSOKIG00005041656	DENND4A (ENSOKIG00005041726)	ENSOKIG00005042607	SLC24A1 (ENSOKIG00005042621)	HACD3 (ENSOKIG00005042645)	arih1l (ENSOKIG00005042766)	NR2E3 (ENSOKIG00005043003)	ENSOKIG00005017602	ENSOKIG00005017668	aph1b (ENSOKIG00005017675)	OTOG (ENSOKIG00005017697) #22	ENSOKIG00005017845	MYOD1 (ENSOKIG00005017854)	TNNT3 (ENSOKIG00005017863)	ENSOKIG00005017897	tnni2b.1 (ENSOKIG00005017921)	tnni2b.1 (ENSOKIG00005017934)	TNNI2 (ENSOKIG00005017950)	ENSOKIG00005017958	ENSOKIG00005017964	CTSD (ENSOKIG00005018062)	ENSOKIG00005019667	drd4b (ENSOKIG00005019681)	SIRT3 (ENSOKIG00005019692)	psmd13 (ENSOKIG00005019710)	ENSOKIG00005019823
Salmo	ANCESTRAL SPECIES	112	ENSGT00390000005764.s	ENSGT00530000063106.B.j	ENSGT00940000155333.A.a.i.a	ENSGT00940000154914.vb.b	ENSGT00940000155836.B.j.a	ENSGT00940000155333.A.a.j	ENSGT00940000154914.vb.a	ENSGT00940000155836.B.j.b	ENSGT01030000234532.B.e.b.e	ENSGT00530000062962.b.a.e.a	ENSGT00940000155744.t.a	ENSGT00940000156926.d.b	ENSGT00940000153246.a.a.a.d	ENSGT00940000160967.f.b	ENSGT00390000002049.c.b.l	ENSGT00940000157490 #22	ENSGT00950000182959.b.a.a	ENSGT00940000158477.a.a.c	ENSGT01000000216979.a	ENSGT00940000158477.a.a.d	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.b.a.b	ENSGT01030000234588.b.b.b.b.a.b.b.b	ENSGT00940000163911.b.c.a.b	ENSGT00940000162463.a	ENSGT00940000160974.b.d.j
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	18	RAMAC (ENSSSAG00000069672)	crybgx (ENSSSAG00000069661)	lctla (ENSSSAG00000043842)	tipin (ENSSSAG00000043439)	dis3l (ENSSSAG00000121052)	ENSSSAG00000092940	RAB11A (ENSSSAG00000062971)	DENND4A (ENSSSAG00000082487)	SLC24A1 (ENSSSAG00000010183)	HACD3 (ENSSSAG00000095799)	ENSSSAG00000095519	ENSSSAG00000009961	ENSSSAG00000009811	ENSSSAG00000119131	ENSSSAG00000010246	ENSSSAG00000104869 #22	ENSSSAG00000056579	ENSSSAG00000010004	TNNT3 (ENSSSAG00000009998)	ENSSSAG00000108582	ENSSSAG00000103815	ENSSSAG00000095150	TNNI2 (ENSSSAG00000084513)	TNNI2 (ENSSSAG00000010176)	tnni2b.2 (ENSSSAG00000010154)	ENSSSAG00000101599	ENSSSAG00000009981	ENSSSAG00000027269	ENSSSAG00000102956	ENSSSAG00000094753	ENSSSAG00000058230
Atlantic salmon	MODERN SPECIES	2	HOMER2 (ENSSSAG00000103439)	crybgx (ENSSSAG00000008876)	ENSSSAG00000008839	tipin (ENSSSAG00000082602)	ENSSSAG00000103573	RAB11A (ENSSSAG00000099276)	DENND4A (ENSSSAG00000100635)	SLC24A1 (ENSSSAG00000009849)	HACD3 (ENSSSAG00000009594)	ENSSSAG00000099816	ENSSSAG00000072984	ENSSSAG00000101082	ENSSSAG00000094543	ENSSSAG00000104282	ENSSSAG00000113698	ENSSSAG00000096205 #22	TNNT3 (ENSSSAG00000010002)	myod1 (ENSSSAG00000040107)	ENSSSAG00000084840	ENSSSAG00000108614	TNNI2 (ENSSSAG00000009799)	tnni2b.2 (ENSSSAG00000115361)	ENSSSAG00000102508	ENSSSAG00000096849	ENSSSAG00000111535	ENSSSAG00000120009	ENSSSAG00000114143	ENSSSAG00000110591	ENSSSAG00000013813	ENSSSAG00000095829	ENSSSAG00000040098
River trout	MODERN SPECIES	3	ENSSTUG00000007041	ENSSTUG00000007012	ppfia1 (ENSSTUG00000004645)	tmod2 (ENSSTUG00000004523)	leo1 (ENSSTUG00000004341)	ENSSTUG00000004325	rab11a (ENSSTUG00000004309)	dennd4a (ENSSTUG00000002300)	SLC24A1 (ENSSTUG00000002229)	HACD3 (ENSSTUG00000002183)	arih1l (ENSSTUG00000002114)	NR2E3 (ENSSTUG00000002100)	ENSSTUG00000002080	ENSSTUG00000002075	aph1b (ENSSTUG00000002066)	OTOG (ENSSTUG00000001950) #22	myod1 (ENSSTUG00000001933)	ENSSTUG00000001917	ENSSTUG00000001903	tnni2b.1 (ENSSTUG00000001896)	TNNI2 (ENSSTUG00000001889)	ENSSTUG00000001875	ENSSTUG00000001870	ENSSTUG00000001858	ctsd (ENSSTUG00000001706)	ENSSTUG00000001686	ENSSTUG00000001681	drd4b (ENSSTUG00000001673)	sirt3 (ENSSTUG00000001668)	psmd13 (ENSSTUG00000001588)	ENSSTUG00000001580
Northern pike	MODERN SPECIES	1	homer2 (ENSELUG00000019561)	crybgx (ENSELUG00000019531)	lctla (ENSELUG00000019497)	tipin (ENSELUG00000019453)	dis3l (ENSELUG00000019420)	ENSELUG00000019353	RAB11B (ENSELUG00000019240)	dennd4a (ENSELUG00000000821)	SLC24A1 (ENSELUG00000019158)	HACD3 (ENSELUG00000019142)	arih1l (ENSELUG00000019125)	NR2E3 (ENSELUG00000019079)	ENSELUG00000019041	ENSELUG00000018968	aph1b (ENSELUG00000018962)	OTOG (ENSELUG00000018933) #22	MYOD1 (ENSELUG00000018844)	TNNT3 (ENSELUG00000018827)	ENSELUG00000026443	ENSELUG00000018803	ENSELUG00000018743	tnni2b.1 (ENSELUG00000018719)	ENSELUG00000028322	ENSELUG00000028980	ENSELUG00000033770	ENSELUG00000027344	ENSELUG00000028989	ctsd (ENSELUG00000018601)	ENSELUG00000018575	drd4b (ENSELUG00000018550)	sirt3 (ENSELUG00000018526)
Acanthomorphata	ANCESTRAL SPECIES	303															ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000177294	ENSGT00940000153901.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000011262.e.b
Cod	MODERN SPECIES	5	ENSGMOG00000012328	ENSGMOG00000012317	immp1l (ENSGMOG00000012313)	ELP4 (ENSGMOG00000012307)	pax6b (ENSGMOG00000012304)	wt1b (ENSGMOG00000012296)	eif3m (ENSGMOG00000012291)	prrg4 (ENSGMOG00000012288)	QSER1 (ENSGMOG00000024870)	cstf3 (ENSGMOG00000012275)	hipk3b (ENSGMOG00000012267)	ENSGMOG00000012262	spon1a (ENSGMOG00000013410)	ENSGMOG00000013397	ENSGMOG00000011343	ENSGMOG00000011350 #22	ENSGMOG00000035611	TNNT3 (ENSGMOG00000011393)	ENSGMOG00000028561	tnni2b.1 (ENSGMOG00000018981)	ENSGMOG00000018961	ENSGMOG00000018911	ENSGMOG00000006402	ENSGMOG00000025002	ENSGMOG00000006378	ENSGMOG00000025333	ENSGMOG00000006346	ENSGMOG00000006331	ENSGMOG00000003209	ENSGMOG00000003176	ENSGMOG00000003144
Euacanthomorphacea	ANCESTRAL SPECIES	161															ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000011262.e.b
Pinecone sodierfish	MODERN SPECIES	17													ENSMMDG00005002781	ENSMMDG00005002761	aph1b (ENSMMDG00005002738)	OTOG (ENSMMDG00005019687) #22	TNNT3 (ENSMMDG00005019567)	ENSMMDG00005019558	ENSMMDG00005019456	GLG1 (ENSMMDG00005019418)	ENSMMDG00005019392	ENSMMDG00005019389	znf395a (ENSMMDG00005019384)	PAQR8 (ENSMMDG00005019190)	ENSMMDG00005019163	il17a/f1 (ENSMMDG00005019158)	stmn4l (ENSMMDG00005019155)	gpn1 (ENSMMDG00005018793)	ENSMMDG00005018779	ENSMMDG00005018777	EMILIN1 (ENSMMDG00005018772)
Percomorphaceae	ANCESTRAL SPECIES	15	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608
Tiger tail seahorse	MODERN SPECIES	136	ptpmt1 (ENSHCOG00000000812)	ndufs3 (ENSHCOG00000007117)	slc22a18 (ENSHCOG00000007148)	HACD3 (ENSHCOG00000000227)	SLC24A1 (ENSHCOG00000007190)	ENSHCOG00000007227	socs4 (ENSHCOG00000007249)	wdhd1 (ENSHCOG00000007286)	ENSHCOG00000007299	gch1 (ENSHCOG00000007311)	SAMD4A (ENSHCOG00000007338)	pacsin3 (ENSHCOG00000007361)	GLG1 (ENSHCOG00000007399)	tnni2b.1 (ENSHCOG00000007414)	aph1b (ENSHCOG00000007434)	OTOG (ENSHCOG00000007493) #22	myod1 (ENSHCOG00000007505)	TNNT3 (ENSHCOG00000007514)	ENSHCOG00000007520	foxr1 (ENSHCOG00000007530)	atp6v0d1 (ENSHCOG00000000254)	ENSHCOG00000007547	ENSHCOG00000000257	ENSHCOG00000007798	ENSHCOG00000007856	ENSHCOG00000007893	c1qtnf4 (ENSHCOG00000007905)	ENSHCOG00000007911	ist1 (ENSHCOG00000007934)	mphosph10 (ENSHCOG00000007964)	mcee (ENSHCOG00000007970)
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065
Ovalentaria	ANCESTRAL SPECIES	17	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000154856.A.a.c.b	ENSGT00940000163716.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b
Oryzias	ANCESTRAL SPECIES	79			ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000162993	ENSGT00390000002200.a.a
Oryzias_b	ANCESTRAL SPECIES	114											ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT00940000162993	ENSGT00390000002200.a.a
Indian medaka	MODERN SPECIES	418											SAMD4A (ENSOMEG00000019399)	ero1a (ENSOMEG00000019468)	pacsin3 (ENSOMEG00000019556)	GLG1 (ENSOMEG00000000522)	aph1b (ENSOMEG00000019680)	OTOG (ENSOMEG00000019766) #22	myod1 (ENSOMEG00000019794)	TNNT3 (ENSOMEG00000019818)	ENSOMEG00000019829	ENSOMEG00000019845	atp6v0d1 (ENSOMEG00000019877)	ENSOMEG00000019889	ENSOMEG00000019915	ENSOMEG00000019927	ENSOMEG00000019935	ENSOMEG00000019949	ENSOMEG00000019961	ENSOMEG00000019965	ENSOMEG00000019974
Oryzias_a	ANCESTRAL SPECIES	116			ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22
Japanese Medaka HdrR	MODERN SPECIES	17	ENSORLG00000025194	ENSORLG00000029333	wdhd1 (ENSORLG00000019721)	gch1 (ENSORLG00000023979)	ENSORLG00000025298	SAMD4A (ENSORLG00000022018)	ero1a (ENSORLG00000023932)	pacsin3 (ENSORLG00000019702)	ENSORLG00000029833	ENSORLG00000023229	aph1b (ENSORLG00000018404)	ENSORLG00000022342	ENSORLG00000025073	ENSORLG00000024705	ENSORLG00000028201	ENSORLG00000019694 #22	atp6v0d1 (ENSORLG00000026745)	foxr1 (ENSORLG00000019674)	ENSORLG00000029446	ENSORLG00000019668	ENSORLG00000023713	ENSORLG00000022079	ENSORLG00000000017	ENSORLG00000029986	ENSORLG00000019631	arfgap2 (ENSORLG00000019613)	pex16 (ENSORLG00000019603)	cars1 (ENSORLG00000022551)	crybgx (ENSORLG00000030061)	lctla (ENSORLG00000030071)	tipin (ENSORLG00000018370)
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000154856.A.a.c.b.f.a	ENSGT00940000163716.c.b.d.b.a	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813
Aplocheiloidei	ANCESTRAL SPECIES	39	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000154856.A.a.c.b.f.a	ENSGT00940000163716.c.b.d.b.a	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813
Mangrove rivulus	MODERN SPECIES	94	NR2E3 (ENSKMAG00000020481)	slc22a18 (ENSKMAG00000020503)	HACD3 (ENSKMAG00000020519)	SAMD4A (ENSKMAG00000020543)	gch1 (ENSKMAG00000020574)	wdhd1 (ENSKMAG00000020604)	socs4 (ENSKMAG00000020674)	ENSKMAG00000020680	dennd4a (ENSKMAG00000020759)	SLC24A1 (ENSKMAG00000020920)	ero1a (ENSKMAG00000020950)	pacsin3 (ENSKMAG00000021024)	glg1b (ENSKMAG00000021075)	tnni2b.1 (ENSKMAG00000021151)	aph1b (ENSKMAG00000021168)	OTOG (ENSKMAG00000021189) #22	myod1 (ENSKMAG00000021238)	TNNT3 (ENSKMAG00000021246)	ENSKMAG00000000140	ENSKMAG00000000158	ENSKMAG00000000224	foxr1 (ENSKMAG00000000233)	atp6v0d1 (ENSKMAG00000000274)
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b.d.b.a	ENSGT00940000154856.A.a.c.b.f.a	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813
NAME_4	ANCESTRAL SPECIES	66	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030.n	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a.a.a	ENSGT00940000163460.a.a.a.a.a.b	ENSGT00940000162993	ENSGT00390000002200.a.a
Mummichog	MODERN SPECIES	354					dennd4a (ENSFHEG00000009121)	socs4 (ENSFHEG00000009130)	ENSFHEG00000009177	ENSFHEG00000009185	gch1 (ENSFHEG00000009194)	SAMD4A (ENSFHEG00000009300)	ero1a (ENSFHEG00000009396)	pacsin3 (ENSFHEG00000009453)	glg1b (ENSFHEG00000009842)	tnni2b.1 (ENSFHEG00000009882)	aph1b (ENSFHEG00000009933)	OTOG (ENSFHEG00000010073) #22	myod1 (ENSFHEG00000010084)	ENSFHEG00000000227	ENSFHEG00000010124	ENSFHEG00000010134	ENSFHEG00000010171
Sheepshead minnow	MODERN SPECIES	198	ENSCVAG00000005151	NR2E3 (ENSCVAG00000005210)	slc22a18 (ENSCVAG00000005226)	HACD3 (ENSCVAG00000005529)	SLC24A1 (ENSCVAG00000005559)	dennd4a (ENSCVAG00000005774)	socs4 (ENSCVAG00000005809)	wdhd1 (ENSCVAG00000006106)	gch1 (ENSCVAG00000006132)	SAMD4A (ENSCVAG00000006183)	ero1a (ENSCVAG00000006196)	pacsin3 (ENSCVAG00000006247)	glg1b (ENSCVAG00000006375)	tnni2b.1 (ENSCVAG00000006390)	aph1b (ENSCVAG00000006407)	OTOG (ENSCVAG00000000628) #22	myod1 (ENSCVAG00000006504)	TNNT3 (ENSCVAG00000006519)	ENSCVAG00000006531	ENSCVAG00000006553	ENSCVAG00000006565	ENSCVAG00000006585	foxr1 (ENSCVAG00000006599)	atp6v0d1 (ENSCVAG00000006618)	ENSCVAG00000006642	ENSCVAG00000006645	ENSCVAG00000006653	ENSCVAG00000006659	ENSCVAG00000006667	ENSCVAG00000006673
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00390000011262.e.b	ENSGT00950000182973.b.a	ENSGT00390000007753.b	ENSGT00940000157933	ENSGT00390000013481.c.a	ENSGT00390000002030.l	ENSGT00940000166202	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000154856.A.a.c.b.e	ENSGT00940000163716.c.b.c.b	ENSGT00940000154856.A.a.c.b.f.b	ENSGT00940000163716.c.b.c.a	ENSGT00940000163716.c.b.d.a	ENSGT00940000163716.c.b.d.b.b	ENSGT00940000163716.c.b.d.b.a.b	ENSGT00940000161832.a
Platyfish	MODERN SPECIES	18	ENSXMAG00000029990	slc22a18 (ENSXMAG00000010324)	HACD3 (ENSXMAG00000010327)	SLC24A1 (ENSXMAG00000010371)	dennd4a (ENSXMAG00000010376)	glg1b (ENSXMAG00000010415)	pacsin3 (ENSXMAG00000022122)	ero1a (ENSXMAG00000029457)	ENSXMAG00000023464	SAMD4A (ENSXMAG00000009864)	gch1 (ENSXMAG00000009846)	wdhd1 (ENSXMAG00000009823)	socs4 (ENSXMAG00000020189)	tnni2b.1 (ENSXMAG00000009816)	aph1b (ENSXMAG00000009804)	OTOG (ENSXMAG00000009782) #22	myod1 (ENSXMAG00000009780)	TNNT3 (ENSXMAG00000027991)	ENSXMAG00000028640	ENSXMAG00000029307	ENSXMAG00000026706	ENSXMAG00000028813	ENSXMAG00000023777	ENSXMAG00000025525	foxr1 (ENSXMAG00000029193)	atp6v0d1 (ENSXMAG00000018770)	ENSXMAG00000019966	ENSXMAG00000017982	ENSXMAG00000028886	ENSXMAG00000017989	ENSXMAG00000017991
Poecilia	ANCESTRAL SPECIES	4	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00390000011262.e.b	ENSGT00950000182973.b.a	ENSGT00390000007753.b	ENSGT00940000157933	ENSGT00390000013481.c.a	ENSGT00390000002030.l	ENSGT00940000166202	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000154856.A.a.c.b.e	ENSGT00940000163716.c.b.d.a	ENSGT00940000163716.c.b.d.b.b	ENSGT00940000154856.A.a.c.b.f.a	ENSGT00940000163716.c.b.d.b.a.a	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065
NAME_6	ANCESTRAL SPECIES	92	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.a.a.b.b.b.a.a.d.a	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.a.a.b.b.b.a.a.c	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00390000011262.e.b	ENSGT00950000182973.b.a	ENSGT00390000007753.b	ENSGT00940000157933	ENSGT00390000013481.c.a	ENSGT00390000002030.l	ENSGT00940000166202	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a.b.b	ENSGT00940000163460.a.a.a.a.b.a	ENSGT00940000163460.a.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000154856.A.a.c.b.e	ENSGT00940000163716.c.b.d.a	ENSGT00940000163716.c.b.d.b.b	ENSGT00940000154856.A.a.c.b.f.a	ENSGT00940000163716.c.b.d.b.a.a
Amazon molly	MODERN SPECIES	350	ENSPFOG00000006238	slc22a18 (ENSPFOG00000006271)	HACD3 (ENSPFOG00000006432)	ENSPFOG00000006545	dennd4a (ENSPFOG00000006791)	glg1b (ENSPFOG00000007965)	pacsin3 (ENSPFOG00000008277)	ero1a (ENSPFOG00000008385)	SAMD4A (ENSPFOG00000008620)	gch1 (ENSPFOG00000008835)	wdhd1 (ENSPFOG00000008914)	ENSPFOG00000022454	socs4 (ENSPFOG00000009206)	tnni2b.1 (ENSPFOG00000009219)	aph1b (ENSPFOG00000009273)	OTOG (ENSPFOG00000009345) #22	myod1 (ENSPFOG00000009843)	TNNT3 (ENSPFOG00000009845)	ENSPFOG00000022109	ENSPFOG00000009947	ENSPFOG00000009981	ENSPFOG00000010010	ENSPFOG00000010075	foxr1 (ENSPFOG00000010151)	atp6v0d1 (ENSPFOG00000010180)	ENSPFOG00000010292	ENSPFOG00000010378	ENSPFOG00000024331	ENSPFOG00000023067	ENSPFOG00000010486	ENSPFOG00000010507
Sailfin molly	MODERN SPECIES	1888												ENSPLAG00000021266	socs4 (ENSPLAG00000021223)	tnni2b.1 (ENSPLAG00000021212)	aph1b (ENSPLAG00000021201)	OTOG (ENSPLAG00000021180) #22
Guppy	MODERN SPECIES	455	slc22a18 (ENSPREG00000019227)	HACD3 (ENSPREG00000019209)	SLC24A1 (ENSPREG00000019149)	dennd4a (ENSPREG00000018994)	glg1b (ENSPREG00000018842)	pacsin3 (ENSPREG00000018797)	ero1a (ENSPREG00000018741)	ENSPREG00000018709	ENSPREG00000018696	SAMD4A (ENSPREG00000018648)	gch1 (ENSPREG00000018570)	wdhd1 (ENSPREG00000018533)	socs4 (ENSPREG00000018515)	tnni2b.1 (ENSPREG00000018498)	aph1b (ENSPREG00000018474)	ENSPREG00000018462 #22	myod1 (ENSPREG00000018453)	TNNT3 (ENSPREG00000018442)	ENSPREG00000018428	ENSPREG00000018424	ENSPREG00000018416	ENSPREG00000018404	foxr1 (ENSPREG00000018384)	atp6v0d1 (ENSPREG00000018365)	ENSPREG00000018343	ENSPREG00000018336	ENSPREG00000018325	ENSPREG00000018312	ENSPREG00000018298	ENSPREG00000018282	ENSPREG00000018257
Ovalentaria_B	ANCESTRAL SPECIES	10	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000154856.A.a.c.b	ENSGT00940000163716.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065
Cichlidae	ANCESTRAL SPECIES	11	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	13	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	32	ENSGT00940000163716.c.b.b	ENSGT00390000002200.a.a	ENSGT00940000162993	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692
Haplochromini	ANCESTRAL SPECIES	34	ENSGT00940000163716.c.b.b	ENSGT00390000002200.a.a	ENSGT00940000162993	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030.o	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT01030000234990	ENSGT00940000177294	ENSGT00940000153901.a.b.a
Haplochromini_A	ANCESTRAL SPECIES	39	ENSGT00940000163716.c.b.b	ENSGT00390000002200.a.a	ENSGT00940000162993	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030.o	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000177294	ENSGT00490000044642.a.a.a.a.a.b.a.a.b.h
Haplochromini_B	ANCESTRAL SPECIES	56	ENSGT01020000230593.B.a.a.b.a	ENSGT00390000002200.a.a	ENSGT00940000162993	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202.c	ENSGT00390000002030.o	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000177294	ENSGT00490000044642.a.a.a.a.a.b.a.a.b.h
Zebra mbuna	MODERN SPECIES	1091	ENSMZEG00005015666	atp6v0d1 (ENSMZEG00005015650)	foxr1 (ENSMZEG00005015635)	HACD3 (ENSMZEG00005015600)	SLC24A1 (ENSMZEG00005015586)	dennd4a (ENSMZEG00005015311)	socs4 (ENSMZEG00005015254)	wdhd1 (ENSMZEG00005015228)	gch1 (ENSMZEG00005015209)	SAMD4A (ENSMZEG00005015188)	ero1a (ENSMZEG00005015175)	pacsin3 (ENSMZEG00005015162)	glg1b (ENSMZEG00005015115)	TNNI2 (ENSMZEG00005015093)	aph1b (ENSMZEG00005015081)	OTOG (ENSMZEG00005015041) #22	myod1 (ENSMZEG00005015006)	TNNT3 (ENSMZEG00005014820)	ENSMZEG00005014810	ENSMZEG00005014803	ENSMZEG00005014794	ENSMZEG00005014786	ENSMZEG00005014779	ENSMZEG00005014767	slc22a18 (ENSMZEG00005014753)	NR2E3 (ENSMZEG00005014737)	ENSMZEG00005014718	ENSMZEG00005014709	mpped2a (ENSMZEG00005014683)	zdhhc13 (ENSMZEG00005014665)	csrp3 (ENSMZEG00005014652)
Eastern happy	MODERN SPECIES		ENSACLG00000008774	ENSACLG00000008777	HACD3 (ENSACLG00000008783)	SLC24A1 (ENSACLG00000008823)	ENSACLG00000008842	dennd4a (ENSACLG00000008854)	socs4 (ENSACLG00000009024)	wdhd1 (ENSACLG00000009036)	gch1 (ENSACLG00000009069)	SAMD4A (ENSACLG00000009089)	ero1a (ENSACLG00000009207)	pacsin3 (ENSACLG00000009240)	glg1b (ENSACLG00000009342)	tnni2b.1 (ENSACLG00000009427)	aph1b (ENSACLG00000009435)	OTOG (ENSACLG00000009449) #22	myod1 (ENSACLG00000009487)	TNNT3 (ENSACLG00000009498)	ENSACLG00000009574	ENSACLG00000009580	ENSACLG00000009585	ENSACLG00000010176	celf1 (ENSACLG00000010181)	mtfmt (ENSACLG00000010234)	uqcrfs1 (ENSACLG00000010241)	rasl12 (ENSACLG00000010244)	ENSACLG00000010254	UBAP1L (ENSACLG00000010255)	KBTBD13 (ENSACLG00000010261)	pdcd7 (ENSACLG00000010263)	spg21 (ENSACLG00000010436)
P. nyererei	MODERN SPECIES	604					SLC24A1 (ENSPNYG00000018952)	dennd4a (ENSPNYG00000018998)	socs4 (ENSPNYG00000019064)	wdhd1 (ENSPNYG00000019115)	gch1 (ENSPNYG00000019405)	SAMD4A (ENSPNYG00000019428)	ero1a (ENSPNYG00000019483)	pacsin3 (ENSPNYG00000019526)	glg1b (ENSPNYG00000019577)	TNNI2 (ENSPNYG00000019672)	aph1b (ENSPNYG00000019699)	OTOG (ENSPNYG00000019728) #22	myod1 (ENSPNYG00000019848)	TNNT3 (ENSPNYG00000019870)	ENSPNYG00000020016	ENSPNYG00000020046	ENSPNYG00000020055	ENSPNYG00000020071
Burton s mouthbrooder	MODERN SPECIES	684				HACD3 (ENSHBUG00000016439)	SLC24A1 (ENSHBUG00000016373)	dennd4a (ENSHBUG00000016303)	socs4 (ENSHBUG00000015873)	ENSHBUG00000015846	SAMD4A (ENSHBUG00000015778)	gch1 (ENSHBUG00000015632)	ero1a (ENSHBUG00000015614)	pacsin3 (ENSHBUG00000015595)	glg1b (ENSHBUG00000015542)	ENSHBUG00000015470	aph1b (ENSHBUG00000015397)	OTOG (ENSHBUG00000015356) #22	myod1 (ENSHBUG00000015165)	TNNT3 (ENSHBUG00000015184)	ENSHBUG00000015145	ENSHBUG00000015130
Lyretail cichlid	MODERN SPECIES	412	ENSNBRG00000010454	atp6v0d1 (ENSNBRG00000010437)	ENSNBRG00000010426	HACD3 (ENSNBRG00000010400)	SLC24A1 (ENSNBRG00000010383)	ENSNBRG00000010370	socs4 (ENSNBRG00000010334)	wdhd1 (ENSNBRG00000010071)	gch1 (ENSNBRG00000010039)	SAMD4A (ENSNBRG00000009997)	ero1a (ENSNBRG00000009955)	pacsin3 (ENSNBRG00000009877)	glg1b (ENSNBRG00000009842)	ENSNBRG00000009822	aph1b (ENSNBRG00000009791)	OTOG (ENSNBRG00000009698) #22	myod1 (ENSNBRG00000009675)	TNNT3 (ENSNBRG00000009613)	ENSNBRG00000009599	ENSNBRG00000009589
Nile tilapia	MODERN SPECIES		ttc17 (ENSONIG00000005886)	ENSONIG00000036270	LRRC4C (ENSONIG00000020451)	apip (ENSONIG00000005908)	hsd17b12b (ENSONIG00000042636)	slc1a2a (ENSONIG00000005912)	ENSONIG00000005915	chst1 (ENSONIG00000020452)	ENSONIG00000005920	ENSONIG00000034018	MAPK8IP1 (ENSONIG00000036840)	ENSONIG00000042626	A3GALT2 (ENSONIG00000027795)	ENSONIG00000041355	celf1 (ENSONIG00000008300)	OTOG (ENSONIG00000007889) #22	myod2 (ENSONIG00000007897)	TNNT3 (ENSONIG00000007898)	ENSONIG00000032798	ENSONIG00000030513	ENSONIG00000041528	ENSONIG00000029025	ENSONIG00000040953	ENSONIG00000038942	fgf4 (ENSONIG00000018093)	fgf3 (ENSONIG00000018091)	lto1 (ENSONIG00000028091)	fah (ENSONIG00000037906)	ENSONIG00000042755	ENSONIG00000034177	ENSONIG00000030455
Midas cichlid	MODERN SPECIES	557															aph1b (ENSACIG00000017891)	OTOG (ENSACIG00000017912) #22	myod1 (ENSACIG00000017993)	TNNT3 (ENSACIG00000018008)	ENSACIG00000018070
Pomacentridae	ANCESTRAL SPECIES	15	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813
Bicolor damselfish	MODERN SPECIES	78																ENSSPAG00000017872 #22	myod1 (ENSSPAG00000017839)	TNNT3 (ENSSPAG00000017227)
Pomacentridae_A	ANCESTRAL SPECIES	67	ENSGT00950000183076.a.b.b.a.a	ENSGT00390000010652.C	ENSGT00940000160456	ENSGT01030000234623.a.b.b	ENSGT00390000008502	ENSGT00690000102225	ENSGT00390000011608	ENSGT00940000156813	ENSGT00390000009453.fb.b	ENSGT00390000014065	ENSGT00390000017480	ENSGT00940000161832.a	ENSGT00940000161051.a.a.b.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a
Amphiprion	ANCESTRAL SPECIES	42	ENSGT00940000171332	ENSGT00950000183076.a.b.b.a.a	ENSGT00390000010652.C	ENSGT00940000160456	ENSGT01030000234623.a.b.b	ENSGT00390000008502	ENSGT00690000102225	ENSGT00390000011608	ENSGT00940000156813	ENSGT00390000009453.fb.b	ENSGT00390000014065	ENSGT00390000017480	ENSGT00940000161832.a	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00980000199380.a.b	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00390000011262.e.b	ENSGT00950000182973.b.a	ENSGT00390000007753.b	ENSGT00940000157933	ENSGT00390000013481.c.a	ENSGT00390000002030	ENSGT00940000166202	ENSGT00940000155836.B
Orange clownfish	MODERN SPECIES		ENSAPEG00000000188	ENSAPEG00000000186	SERINC4 (ENSAPEG00000000185)	hypk (ENSAPEG00000000184)	mfap1 (ENSAPEG00000000183)	hddc3 (ENSAPEG00000000182)	vps33b (ENSAPEG00000000181)	prc1b (ENSAPEG00000000180)	ptpmt1 (ENSAPEG00000000179)	ndufs3 (ENSAPEG00000000178)	c1qtnf4 (ENSAPEG00000000177)	ENSAPEG00000000176	ENSAPEG00000000175	tnni2b.1 (ENSAPEG00000000174)	aph1b (ENSAPEG00000000173)	OTOG (ENSAPEG00000000171) #22	myod1 (ENSAPEG00000000170)	TNNT3 (ENSAPEG00000000169)	ENSAPEG00000000168	ENSAPEG00000000167	ENSAPEG00000000166	foxr1 (ENSAPEG00000000165)	atp6v0d1 (ENSAPEG00000000164)	glg1b (ENSAPEG00000000163)	ENSAPEG00000000162	pacsin3 (ENSAPEG00000000161)	ero1a (ENSAPEG00000000160)	SAMD4A (ENSAPEG00000000159)	gch1 (ENSAPEG00000000158)	wdhd1 (ENSAPEG00000000157)	socs4 (ENSAPEG00000000156)
Clown anemonefish	MODERN SPECIES	2000												ENSAOCG00000016088	ENSAOCG00000016140	tnni2b.1 (ENSAOCG00000016168)	aph1b (ENSAOCG00000016196)	OTOG (ENSAOCG00000016353) #22	myod1 (ENSAOCG00000016381)	TNNT3 (ENSAOCG00000016439)	ENSAOCG00000001128
Spiny chromis	MODERN SPECIES	203		ENSAPOG00000008561	SERINC4 (ENSAPOG00000008572)	hypk (ENSAPOG00000008593)	mfap1 (ENSAPOG00000008633)	hddc3 (ENSAPOG00000008637)	vps33b (ENSAPOG00000008758)	prc1b (ENSAPOG00000000921)	ptpmt1 (ENSAPOG00000009054)	ndufs3 (ENSAPOG00000009074)	c1qtnf4 (ENSAPOG00000009100)	ENSAPOG00000009120	ENSAPOG00000009168	tnni2b.1 (ENSAPOG00000009198)	aph1b (ENSAPOG00000009227)	OTOG (ENSAPOG00000009407) #22	myod1 (ENSAPOG00000000266)	TNNT3 (ENSAPOG00000009460)	ENSAPOG00000009481	ENSAPOG00000009501	ENSAPOG00000009515	ENSAPOG00000009535
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161051.a.a.b.a.c	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813
Anabantaria	ANCESTRAL SPECIES	43															ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a.c	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00950000183172.C	ENSGT00940000157462.C.c.a	ENSGT00940000157661.e.b	ENSGT00940000161238.l	ENSGT00940000165402	ENSGT00940000158758	ENSGT00940000154390.E.d	ENSGT00950000182839.B.b.a	ENSGT00940000165480.a	ENSGT00730000111007.a.b	ENSGT00940000153561.b.a.a.b	ENSGT00940000158565	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.a	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a.c	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b
Climbing perch	MODERN SPECIES	16	ENSATEG00000015757	ENSATEG00000015866	ENSATEG00000029986	ENSATEG00000015977	ENSATEG00000015989	ENSATEG00000015995	ENSATEG00000016000	ENSATEG00000016007	ENSATEG00000016025	SHANK2 (ENSATEG00000016145)	ENSATEG00000016162	PPFIA1 (ENSATEG00000016231)	ENSATEG00000016528	ENSATEG00000026393	ENSATEG00000016694	ENSATEG00000016726 #22	ENSATEG00000016866	ENSATEG00000016880	ENSATEG00000016938	ENSATEG00000016974	ENSATEG00000017030	ENSATEG00000017062	ENSATEG00000017251	ENSATEG00000017101	ENSATEG00000017115	ENSATEG00000017151	ENSATEG00000017171	ENSATEG00000017190	c1qtnf4 (ENSATEG00000017205)	ENSATEG00000017226	ptpmt1 (ENSATEG00000017238)
Carangaria	ANCESTRAL SPECIES	11	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00960000186692	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813
Pleuronectoidei	ANCESTRAL SPECIES	39	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608	ENSGT00690000102225	ENSGT00390000008502
Tongue sole	MODERN SPECIES	25	nip7 (ENSCSEG00000011356)	ENSCSEG00000011338	ENSCSEG00000011313	ENSCSEG00000011305	BRSK2 (ENSCSEG00000011247)	ENSCSEG00000011220	CORO2B (ENSCSEG00000011186)	anp32a (ENSCSEG00000011176)	glceb (ENSCSEG00000011164)	paqr5a (ENSCSEG00000011095)	ero1a (ENSCSEG00000011060)	pacsin3 (ENSCSEG00000011036)	glg1b (ENSCSEG00000010964)	tnni2b.1 (ENSCSEG00000010949)	aph1b (ENSCSEG00000010946)	OTOG (ENSCSEG00000010918) #22	myod1 (ENSCSEG00000010907)
Turbot	MODERN SPECIES	17	ENSSMAG00000007996	ENSSMAG00000007972	ENSSMAG00000007954	ENSSMAG00000007929	HACD3 (ENSSMAG00000007882)	SLC24A1 (ENSSMAG00000007857)	DENND4A (ENSSMAG00000007433)	wdhd1 (ENSSMAG00000007346)	ENSSMAG00000034634	SAMD4A (ENSSMAG00000007254)	ero1a (ENSSMAG00000007207)	ENSSMAG00000007168	ENSSMAG00000006788	ENSSMAG00000006609	ENSSMAG00000006568	ENSSMAG00000027873 #22	ENSSMAG00000006529	ENSSMAG00000006392	ENSSMAG00000006376	ENSSMAG00000006344	ENSSMAG00000006320	ENSSMAG00000027949	ENSSMAG00000006274	ENSSMAG00000006222	c1qtnf4 (ENSSMAG00000030864)	ENSSMAG00000006194	ptpmt1 (ENSSMAG00000006187)	prc1b (ENSSMAG00000006152)	vps33b (ENSSMAG00000006116)	hddc3 (ENSSMAG00000006096)	mfap1 (ENSSMAG00000006029)
Carangaria_A	ANCESTRAL SPECIES	19	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608
Barramundi perch	MODERN SPECIES	96	ENSLCAG00010017694	NR2E3 (ENSLCAG00010017688)	slc22a18 (ENSLCAG00010017678)	HACD3 (ENSLCAG00010017676)	SLC24A1 (ENSLCAG00010017673)	dennd4a (ENSLCAG00010017670)	socs4 (ENSLCAG00010017668)	wdhd1 (ENSLCAG00010017654)	gch1 (ENSLCAG00010017650)	SAMD4A (ENSLCAG00010017642)	ero1a (ENSLCAG00010017638)	pacsin3 (ENSLCAG00010017636)	glg1b (ENSLCAG00010017596)	tnni2b.1 (ENSLCAG00010017526)	aph1b (ENSLCAG00010017523)	OTOG (ENSLCAG00010017486) #22	myod1 (ENSLCAG00010017465)	TNNT3 (ENSLCAG00010017455)	ENSLCAG00010017452	ENSLCAG00010017447
Seriola	ANCESTRAL SPECIES	30	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608
Greater amberjack	MODERN SPECIES	3	NR2E3 (ENSSDUG00000016573)	slc22a18 (ENSSDUG00000016604)	HACD3 (ENSSDUG00000016623)	SLC24A1 (ENSSDUG00000016668)	dennd4a (ENSSDUG00000016708)	socs4 (ENSSDUG00000016907)	wdhd1 (ENSSDUG00000016996)	gch1 (ENSSDUG00000017494)	SAMD4A (ENSSDUG00000017510)	ENSSDUG00000017549	ero1a (ENSSDUG00000017566)	pacsin3 (ENSSDUG00000017630)	glg1b (ENSSDUG00000017681)	ENSSDUG00000017775	aph1b (ENSSDUG00000017793)	OTOG (ENSSDUG00000017868) #22	myod1 (ENSSDUG00000018276)	TNNT3 (ENSSDUG00000018283)	ENSSDUG00000018305	ENSSDUG00000018321	ENSSDUG00000018331	foxr1 (ENSSDUG00000018344)	atp6v0d1 (ENSSDUG00000018360)	ENSSDUG00000018375	ENSSDUG00000018386	ENSSDUG00000018406	ENSSDUG00000018427	ENSSDUG00000018441	c1qtnf4 (ENSSDUG00000018457)	ndufs3 (ENSSDUG00000018492)	ptpmt1 (ENSSDUG00000018606)
Yellowtail amberjack	MODERN SPECIES	2714	slc24a5 (ENSSLDG00000021873)	myef2 (ENSSLDG00000021862)	ENSSLDG00000021852	CTXN2 (ENSSLDG00000021847)	SLC12A1 (ENSSLDG00000021800)	dennd4a (ENSSLDG00000021745)	socs4 (ENSSLDG00000021736)	wdhd1 (ENSSLDG00000021689)	gch1 (ENSSLDG00000021679)	SAMD4A (ENSSLDG00000021630)	ero1a (ENSSLDG00000021600)	pacsin3 (ENSSLDG00000021581)	glg1b (ENSSLDG00000021532)	TNNI2 (ENSSLDG00000021512)	aph1b (ENSSLDG00000021492)	OTOG (ENSSLDG00000021395) #22	myod1 (ENSSLDG00000021376)	TNNT3 (ENSSLDG00000021245)
Eupercaria	ANCESTRAL SPECIES	14	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161051.a.a.b.a.c	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065
Tetraodontidae	ANCESTRAL SPECIES	4	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000154856.A.a.c.b	ENSGT00940000161051.a.a.b.a.c	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608	ENSGT00690000102225
Tetraodon	MODERN SPECIES	20	ENSTNIG00000005152	ENSTNIG00000005151	NR2E3 (ENSTNIG00000005150)	HACD3 (ENSTNIG00000001644)	SLC24A1 (ENSTNIG00000018806)	dennd4a (ENSTNIG00000018805)	socs4 (ENSTNIG00000002432)	wdhd1 (ENSTNIG00000018803)	gch1 (ENSTNIG00000018802)	SAMD4A (ENSTNIG00000018801)	ero1a (ENSTNIG00000018800)	pacsin3 (ENSTNIG00000018799)	glg1b (ENSTNIG00000018797)	tnni2b.1 (ENSTNIG00000018796)	aph1b (ENSTNIG00000018795)	OTOG (ENSTNIG00000018794) #22	myod1 (ENSTNIG00000018793)	TNNT3 (ENSTNIG00000018792)	ENSTNIG00000018791	foxr1 (ENSTNIG00000018790)	atp6v0d1 (ENSTNIG00000018789)	ENSTNIG00000018788	ENSTNIG00000018787	ENSTNIG00000018786	c1qtnf4 (ENSTNIG00000018785)	ndufs3 (ENSTNIG00000018784)	prc1b (ENSTNIG00000018783)	ENSTNIG00000018782	hddc3 (ENSTNIG00000018781)	mfap1 (ENSTNIG00000018780)	hypk (ENSTNIG00000018779)
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b
Ballan wrasse	MODERN SPECIES	142	slc22a18 (ENSLBEG00000024489)	HACD3 (ENSLBEG00000024570)	SLC24A1 (ENSLBEG00000024638)	dennd4a (ENSLBEG00000024700)	socs4 (ENSLBEG00000024771)	wdhd1 (ENSLBEG00000024847)	gch1 (ENSLBEG00000024950)	SAMD4A (ENSLBEG00000025062)	ero1a (ENSLBEG00000025153)	pacsin3 (ENSLBEG00000025230)	glg1b (ENSLBEG00000025302)	tnni2b.1 (ENSLBEG00000025369)	aph1b (ENSLBEG00000025401)	ENSLBEG00000025428	ENSLBEG00000025444	ENSLBEG00000025461 #22	myod1 (ENSLBEG00000025479)	TNNT3 (ENSLBEG00000025517)	ENSLBEG00000025581	ENSLBEG00000025615	foxr1 (ENSLBEG00000025631)	atp6v0d1 (ENSLBEG00000025653)	ENSLBEG00000025684	ENSLBEG00000025703	ENSLBEG00000025718	c1qtnf4 (ENSLBEG00000025735)	ndufs3 (ENSLBEG00000025754)	ptpmt1 (ENSLBEG00000025784)	prc1b (ENSLBEG00000025812)	vps33b (ENSLBEG00000025870)	hddc3 (ENSLBEG00000025928)
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a.c	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813
European seabass	MODERN SPECIES	18	ENSDLAG00005017548	ENSDLAG00005017617	ENSDLAG00005030198	HACD3 (ENSDLAG00005032938)	SLC24A1 (ENSDLAG00005029857)	DENND4A (ENSDLAG00005017811)	socs4 (ENSDLAG00005031594)	wdhd1 (ENSDLAG00005018377)	gch1 (ENSDLAG00005031132)	SAMD4A (ENSDLAG00005018542)	ero1a (ENSDLAG00005018493)	ENSDLAG00005018657	ENSDLAG00005018712	ENSDLAG00005019543	ENSDLAG00005026766	ENSDLAG00005019564 #22	ENSDLAG00005034786	ENSDLAG00005019645	ENSDLAG00005019721	ENSDLAG00005032447	ENSDLAG00005028426	ENSDLAG00005019755	ENSDLAG00005019779	ENSDLAG00005032776	ENSDLAG00005026741	ENSDLAG00005005513	ENSDLAG00005019814	ENSDLAG00005019820	ENSDLAG00005020430	hddc3 (ENSDLAG00005020498)	vps33b (ENSDLAG00005019854)
Large yellow croaker	MODERN SPECIES	480	ENSLCRG00005002613	NR2E3 (ENSLCRG00005002635)	slc22a18 (ENSLCRG00005002671)	HACD3 (ENSLCRG00005002710)	SLC24A1 (ENSLCRG00005002811)	dennd4a (ENSLCRG00005002845)	socs4 (ENSLCRG00005002924)	gch1 (ENSLCRG00005002929)	SAMD4A (ENSLCRG00005002932)	ero1a (ENSLCRG00005002944)	pacsin3 (ENSLCRG00005002960)	glg1b (ENSLCRG00005002969)	tnni2b.1 (ENSLCRG00005003007)	aph1b (ENSLCRG00005003009)	aph1b (ENSLCRG00005003014)	OTOG (ENSLCRG00005003017) #22	nqo1 (ENSLCRG00005003029)	ENSLCRG00005003039	ENSLCRG00005003042	ENSLCRG00005003045	ENSLCRG00005003048	rpl12 (ENSLCRG00005003051)	pole3 (ENSLCRG00005003071)	kmt5b (ENSLCRG00005003072)	ccnb2 (ENSLCRG00005003075)	cd82a (ENSLCRG00005003078)	tspan18a (ENSLCRG00005003082)	ENSLCRG00005003084	dapk2a (ENSLCRG00005003886)	rab11a (ENSLCRG00005003890)	tacr1b (ENSLCRG00005003894)
Perciformes	ANCESTRAL SPECIES	15	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813
Cottioidei	ANCESTRAL SPECIES	13						ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608	ENSGT00690000102225	ENSGT00390000008502
Stickleback	MODERN SPECIES	1	ENSGACG00000017296	ENSGACG00000017297	ENSGACG00000017302	dapk2a (ENSGACG00000017307)	ENSGACG00000017310	ENSGACG00000017313	dis3l (ENSGACG00000017315)	socs4 (ENSGACG00000017319)	wdhd1 (ENSGACG00000017321)	gch1 (ENSGACG00000017325)	ENSGACG00000017331	pacsin3 (ENSGACG00000017333)	GLG1 (ENSGACG00000017337)	tnni2b.1 (ENSGACG00000017338)	aph1b (ENSGACG00000017339)	OTOG (ENSGACG00000017343) #22	myod1 (ENSGACG00000017350)	TNNT3 (ENSGACG00000017352)	ENSGACG00000017354	foxr1 (ENSGACG00000017356)	atp6v0d1 (ENSGACG00000017358)	ENSGACG00000017378	c1qtnf4 (ENSGACG00000017381)	ndufs3 (ENSGACG00000017384)	ptpmt1 (ENSGACG00000017391)	prc1b (ENSGACG00000017394)	vps33b (ENSGACG00000017403)	hddc3 (ENSGACG00000017413)	mfap1 (ENSGACG00000017419)	hypk (ENSGACG00000017423)	SERINC4 (ENSGACG00000017426)
Lumpfish	MODERN SPECIES	18	ENSCLMG00005003412	ENSCLMG00005003411	ENSCLMG00005003410	ENSCLMG00005003408	ENSCLMG00005003406	ENSCLMG00005003404	socs4 (ENSCLMG00005003403)	wdhd1 (ENSCLMG00005003392)	gch1 (ENSCLMG00005003387)	SAMD4A (ENSCLMG00005003385)	ero1a (ENSCLMG00005003328)	pacsin3 (ENSCLMG00005003323)	glg1b (ENSCLMG00005003173)	tnni2b.1 (ENSCLMG00005003095)	aph1b (ENSCLMG00005003089)	OTOG (ENSCLMG00005003067) #22	MYOD1 (ENSCLMG00005003056)	TNNT3 (ENSCLMG00005003049)	ENSCLMG00005003043	ENSCLMG00005003037	ENSCLMG00005003032	foxr1 (ENSCLMG00005003021)	atp6v0d1 (ENSCLMG00005002959)	ENSCLMG00005002921	ENSCLMG00005002881	c1qtnf4 (ENSCLMG00005002868)	ENSCLMG00005002846	ENSCLMG00005002820	ENSCLMG00005012057	ENSCLMG00005012056	ENSCLMG00005012055
Perciformes_a	ANCESTRAL SPECIES	13	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490 #22	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608
Pike perch	MODERN SPECIES	42	ENSSLUG00000014234	NR2E3 (ENSSLUG00000014245)	slc22a18 (ENSSLUG00000014266)	HACD3 (ENSSLUG00000014295)	SLC24A1 (ENSSLUG00000014312)	dennd4a (ENSSLUG00000014340)	socs4 (ENSSLUG00000014357)	wdhd1 (ENSSLUG00000014371)	gch1 (ENSSLUG00000014411)	SAMD4A (ENSSLUG00000014423)	ero1a (ENSSLUG00000014452)	pacsin3 (ENSSLUG00000014868)	glg1b (ENSSLUG00000014927)	tnni2b.1 (ENSSLUG00000015288)	aph1b (ENSSLUG00000015292)	OTOG (ENSSLUG00000015304) #22	myod1 (ENSSLUG00000015360)	TNNT3 (ENSSLUG00000015377)	ENSSLUG00000015385	foxr1 (ENSSLUG00000015392)	atp6v0d1 (ENSSLUG00000015419)	ENSSLUG00000015470	ENSSLUG00000015477	ENSSLUG00000015482	c1qtnf4 (ENSSLUG00000015485)	ndufs3 (ENSSLUG00000015488)	ptpmt1 (ENSSLUG00000015495)	prc1b (ENSSLUG00000015534)	vps33b (ENSSLUG00000015798)	hddc3 (ENSSLUG00000015881)	mfap1 (ENSSLUG00000015886)
Channel bull blenny	MODERN SPECIES	17	ENSCGOG00000001114	NR2E3 (ENSCGOG00000001111)	slc22a18 (ENSCGOG00000001108)	HACD3 (ENSCGOG00000001094)	SLC24A1 (ENSCGOG00000001085)	dennd4a (ENSCGOG00000000880)	socs4 (ENSCGOG00000000851)	wdhd1 (ENSCGOG00000000697)	gch1 (ENSCGOG00000000646)	SAMD4A (ENSCGOG00000000470)	ero1a (ENSCGOG00000000411)	pacsin3 (ENSCGOG00000000368)	glg1b (ENSCGOG00000000287)	tnni2b.1 (ENSCGOG00000000244)	aph1b (ENSCGOG00000000232)	OTOG (ENSCGOG00000000174) #22	myod1 (ENSCGOG00000000126)	TNNT3 (ENSCGOG00000000102)	ENSCGOG00000000089	ENSCGOG00000000084	ENSCGOG00000000074	ENSCGOG00000019539	foxr1 (ENSCGOG00000019537)	atp6v0d1 (ENSCGOG00000019523)	ENSCGOG00000019501	c1qtnf4 (ENSCGOG00000019498)	ndufs3 (ENSCGOG00000019478)	ptpmt1 (ENSCGOG00000019475)	prc1b (ENSCGOG00000019399)	vps33b (ENSCGOG00000018984)	hddc3 (ENSCGOG00000018977)
Elephant shark	MODERN SPECIES	1493	ENSCMIG00000013252	ENSCMIG00000013249	ENSCMIG00000013246	ENSCMIG00000013240	ENSCMIG00000013224	ENSCMIG00000013206	ENSCMIG00000013201	ENSCMIG00000013198	ENSCMIG00000013195	ENSCMIG00000013191	ENSCMIG00000013179	kcnj11 (ENSCMIG00000013178)	abcc8 (ENSCMIG00000012502) #20	ENSCMIG00000012071	ush1c (ENSCMIG00000012065) #21	OTOG (ENSCMIG00000012027) #22	zgc:172145 (ENSCMIG00000012006)	myod1 (ENSCMIG00000012005)	ctsd (ENSCMIG00000011996)	ENSCMIG00000011990	ENSCMIG00000011984	ENSCMIG00000011979	ENSCMIG00000011975	ENSCMIG00000011961	ENSCMIG00000011952	tnnt3a (ENSCMIG00000011947)	gatd1 (ENSCMIG00000011899)	taldo1 (ENSCMIG00000011878)	EPS8L2 (ENSCMIG00000011869)	ENSCMIG00000011858	ENSCMIG00000011856
Cyclostomata	ANCESTRAL SPECIES	760																ENSGT00940000157490 #22	ENSGT00950000182959.b
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	1080	RPL27A (ENSEBUG00000016338)	ENSEBUG00000016194	ENSEBUG00000002460	ENSEBUG00000015587	ENSEBUG00000004974 #21	ENSEBUG00000014754	spon1a (ENSEBUG00000007462)	ENSEBUG00000010027	ENSEBUG00000005353	ENSEBUG00000013199	ENSEBUG00000000768	ENSEBUG00000016756	ndufs3 (ENSEBUG00000002805)	ENSEBUG00000010585	ENSEBUG00000004846	ENSEBUG00000014462 #22	ENSEBUG00000009390	ENSEBUG00000015193 #22	ENSEBUG00000010939	ENSEBUG00000007373	ENSEBUG00000005797	ENSEBUG00000009577	ENSEBUG00000013518	ENSEBUG00000008274	ENSEBUG00000001026	ENSEBUG00000012516	ENSEBUG00000010957	ENSEBUG00000013329	taf8 (ENSEBUG00000007222)	ENSEBUG00000010730	ENSEBUG00000011613
Hagfish	MODERN SPECIES	1080	ENSEBUG00000002460	ENSEBUG00000015587	ENSEBUG00000004974 #21	ENSEBUG00000014754	spon1a (ENSEBUG00000007462)	ENSEBUG00000010027	ENSEBUG00000005353	ENSEBUG00000013199	ENSEBUG00000000768	ENSEBUG00000016756	ndufs3 (ENSEBUG00000002805)	ENSEBUG00000010585	ENSEBUG00000004846	ENSEBUG00000014462 #22	ENSEBUG00000009390	ENSEBUG00000015193 #22	ENSEBUG00000010939	ENSEBUG00000007373	ENSEBUG00000005797	ENSEBUG00000009577	ENSEBUG00000013518	ENSEBUG00000008274	ENSEBUG00000001026	ENSEBUG00000012516	ENSEBUG00000010957	ENSEBUG00000013329	taf8 (ENSEBUG00000007222)	ENSEBUG00000010730	ENSEBUG00000011613