Euteleostomi	ANCESTRAL SPECIES	228											ENSGT00940000165619	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.b ##26	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00940000160958	ENSGT00390000001969.a	ENSGT00390000011648.b
Sarcopterygii	ANCESTRAL SPECIES	28	ENSGT00390000005294	ENSGT00940000160097	ENSGT00940000160260	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00930000151073 #15	ENSGT00940000164058	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.b ##26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958
Tetrapoda	ANCESTRAL SPECIES	33	ENSGT00940000160097	ENSGT00940000160260	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00930000151073 #15	ENSGT00940000165619	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.b ##26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00940000157025	ENSGT00940000158175	ENSGT00940000155356
Amniota	ANCESTRAL SPECIES	26	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Mammalia	ANCESTRAL SPECIES	80			ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Theria	ANCESTRAL SPECIES	3	ENSGT00940000154557 #9	ENSGT00390000001017 #10	ENSGT00940000162989.c	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Eutheria	ANCESTRAL SPECIES		ENSGT00390000001017 #10	ENSGT00940000162989.c	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00950000182931.A #8	ENSGT00940000163351	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Glires	ANCESTRAL SPECIES		ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Rodentia	ANCESTRAL SPECIES		ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Rodentia_B	ANCESTRAL SPECIES		ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Kangaroo rat	MODERN SPECIES	397	Cept1 (ENSDORG00000009332) #7	Dennd2d (ENSDORG00000009333) #8	ENSDORG00000003889 #9	Pifo (ENSDORG00000002911) #10	ENSDORG00000013347 #11	Wdr77 (ENSDORG00000027503) #12	ENSDORG00000013352 #13	I830077J02Rik (ENSDORG00000000130) #14	Tmigd3 (ENSDORG00000000135) #15	Adora3 (ENSDORG00000024247) #16	Rap1a (ENSDORG00000011656) #17	Inka2 (ENSDORG00000011659) #18	Ddx20 (ENSDORG00000011660) #19	Kcnd3 (ENSDORG00000011661) #20	Cttnbp2nl (ENSDORG00000027299) #21	Wnt2b (ENSDORG00000025091) #22	St7l (ENSDORG00000015552) #23	ENSDORG00000000671 #24	Mov10 (ENSDORG00000000673) #25	Rhoc (ENSDORG00000003382) #26	Ppm1j (ENSDORG00000000680) #27	Tafa3 (ENSDORG00000000682) #28	ENSDORG00000002853 #29	ENSDORG00000014806 #30	Gbp5 (ENSDORG00000013912) #31	ENSDORG00000026684 #32	ENSDORG00000025437 #33	ENSDORG00000024961 #34	ENSDORG00000026024 #35	Kyat3 (ENSDORG00000011824) #36	Gtf2b (ENSDORG00000008028) #37
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00940000154557.c.a.d #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g.a.a ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Muroidea	ANCESTRAL SPECIES	6	ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00940000154557.c.a.d #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g.a.a ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000154557.c.a.c #9	ENSGT00940000154557.c.a.d.a.b #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT01090000262147	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g.a.a ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000154557.c.a.c #9	ENSGT00940000154557.c.a.d.a.b #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT01090000262147	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g.a.a ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000154557.c.a.d.b #9	ENSGT00940000154557.c.a.d.a.a #9	ENSGT00940000154557.c.a.d.a.b #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g.a.a ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Northern American deer mouse	MODERN SPECIES	19	ENSPEMG00000012567 #9	ENSPEMG00000007488 #9	Chil5 (ENSPEMG00000019959) #9	Pifo (ENSPEMG00000000041) #10	ENSPEMG00000019924 #11	Wdr77 (ENSPEMG00000019900) #12	ENSPEMG00000020053 #13	I830077J02Rik (ENSPEMG00000019698) #14	Tmigd3 (ENSPEMG00000019932) #15	Adora3 (ENSPEMG00000019889) #16	Rap1a (ENSPEMG00000030241) #17	Inka2 (ENSPEMG00000025785) #18	Ddx20 (ENSPEMG00000019595) #19	Kcnd3 (ENSPEMG00000020087) #20	Cttnbp2nl (ENSPEMG00000025093) #21	Wnt2b (ENSPEMG00000026096) #22	St7l (ENSPEMG00000019718) #23	ENSPEMG00000011887 ##24	Mov10 (ENSPEMG00000007910) #25	Rhoc (ENSPEMG00000019894) #26	Ppm1j (ENSPEMG00000019596) #27	Tafa3 (ENSPEMG00000019797) #28	Slc16a1 (ENSPEMG00000012987) ##29	Lrig2 (ENSPEMG00000023837)	Magi3 (ENSPEMG00000021592)	Phtf1 (ENSPEMG00000022049)	Rsbn1 (ENSPEMG00000020974)	Ptpn22 (ENSPEMG00000026650)	Bcl2l15 (ENSPEMG00000022471)	ENSPEMG00000031377	Ap4b1 (ENSPEMG00000021858)
Prairie vole	MODERN SPECIES	143	ENSMOCG00000013098 #9	ENSMOCG00000000112	ENSMOCG00000016226	Chil5 (ENSMOCG00000016005) #9	Pifo (ENSMOCG00000007744) #10	Ovgp1 (ENSMOCG00000007897) #11	Wdr77 (ENSMOCG00000000531) #12	ENSMOCG00000018208 #13	I830077J02Rik (ENSMOCG00000001066) #14	Adora3 (ENSMOCG00000009194) #16	Rap1a (ENSMOCG00000002767) #17	Inka2 (ENSMOCG00000012240) #18	Ddx20 (ENSMOCG00000012954) #19	Kcnd3 (ENSMOCG00000019614) #20	Cttnbp2nl (ENSMOCG00000014559) #21	Wnt2b (ENSMOCG00000013588) #22	St7l (ENSMOCG00000020030) #23	Capza1 (ENSMOCG00000007375) ##24	Mov10 (ENSMOCG00000007110) #25	Rhoc (ENSMOCG00000013270) #26	Ppm1j (ENSMOCG00000011058) #27	Tafa3 (ENSMOCG00000016194) #28	Slc16a1 (ENSMOCG00000016724) ##29	Lrig2 (ENSMOCG00000001665)	ENSMOCG00000019954	Magi3 (ENSMOCG00000012680)	Phtf1 (ENSMOCG00000001641)	Rsbn1 (ENSMOCG00000005658)	ENSMOCG00000015941	Bcl2l15 (ENSMOCG00000012353)
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00940000154557.c.a.c #9	ENSGT00940000154557.c.a.d.a.b #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT01090000262147	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g.a.a ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175.i
Chinese hamster chok1gshd	MODERN SPECIES	66	ENSCGRG00001023048 #9	Pifo (ENSCGRG00001012700) #10	Ovgp1 (ENSCGRG00001006238) #11	Wdr77 (ENSCGRG00001002232) #12	Atp5pb (ENSCGRG00001013168) #13	I830077J02Rik (ENSCGRG00001009120) #14	Tmigd3 (ENSCGRG00001018286) #15	Adora3 (ENSCGRG00001021966) #16	Rap1a (ENSCGRG00001016141) #17	Inka2 (ENSCGRG00001010315) #18	Ddx20 (ENSCGRG00001014132) #19	Kcnd3 (ENSCGRG00001015791) #20	ENSCGRG00001001537	Cttnbp2nl (ENSCGRG00001022371) #21	ENSCGRG00001004537	Wnt2b (ENSCGRG00001012445) #22	St7l (ENSCGRG00001014565) #23	Capza1 (ENSCGRG00001002836) ##24	Mov10 (ENSCGRG00001010914) #25	Rhoc (ENSCGRG00001021156) #26	Ppm1j (ENSCGRG00001010908) #27	Tafa3 (ENSCGRG00001000102) #28	Slc16a1 (ENSCGRG00001016479) ##29	Lrig2 (ENSCGRG00001000172)	ENSCGRG00001012904	Magi3 (ENSCGRG00001019918)	Phtf1 (ENSCGRG00001000594)	Rsbn1 (ENSCGRG00001018807)	Ptpn22 (ENSCGRG00001010081)	Bcl2l15 (ENSCGRG00001020305)	Ap4b1 (ENSCGRG00001011109)
Golden Hamster	MODERN SPECIES	681	Chia1 (ENSMAUG00000000308) #9	ENSMAUG00000014307 #9	Pifo (ENSMAUG00000012494) #10	Wdr77 (ENSMAUG00000011523) #12	Atp5pb (ENSMAUG00000014472) #13	ENSMAUG00000013010	I830077J02Rik (ENSMAUG00000012709) #14	Tmigd3 (ENSMAUG00000010720) #15	Adora3 (ENSMAUG00000014394) #16	Rap1a (ENSMAUG00000013379) #17	Inka2 (ENSMAUG00000011511) #18	Ddx20 (ENSMAUG00000010659) #19	Kcnd3 (ENSMAUG00000019508) #20	ENSMAUG00000014776	Cttnbp2nl (ENSMAUG00000013248) #21	Wnt2b (ENSMAUG00000005891) #22	St7l (ENSMAUG00000016886) #23	Capza1 (ENSMAUG00000015757) ##24	Mov10 (ENSMAUG00000013906) #25	Rhoc (ENSMAUG00000011420) #26	Ppm1j (ENSMAUG00000001898) #27	Tafa3 (ENSMAUG00000019199) #28	Slc16a1 (ENSMAUG00000014512) ##29	ENSMAUG00000017894	Lrig2 (ENSMAUG00000014920)	Magi3 (ENSMAUG00000007363)	Phtf1 (ENSMAUG00000007035)	Rsbn1 (ENSMAUG00000014143)	ENSMAUG00000013405	Bcl2l15 (ENSMAUG00000012761)	Ap4b1 (ENSMAUG00000009537)
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000154557.c.a.c #9	ENSGT00940000154557.c.a.d.a.b #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT01090000262147	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g.a.a ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Mus	ANCESTRAL SPECIES	7	ENSGT00940000154557.c.a.c #9	ENSGT00940000154557.c.a.d.a.b #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT01090000262147	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g.a.a ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000154557.c.a.c #9	ENSGT00940000154557.c.a.d.a.b #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT01090000262147	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g.a.a ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000154557.c.a.d.a.b #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT01090000262870	ENSGT01090000262147	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g.a.a ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000154557.c.a.d.a.b #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT01090000262870	ENSGT01090000262147	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g.a.a ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Steppe mouse	MODERN SPECIES	3244														ENSMSIG00000009885	Cttnbp2nl (ENSMSIG00000009897) #21	Wnt2b (ENSMSIG00000009937) #22	St7l (ENSMSIG00000009967) #23	ENSMSIG00000010040	Capza1 (ENSMSIG00000010067) ##24	Mov10 (ENSMSIG00000010092) #25	Rhoc (ENSMSIG00000010271) #26	Ppm1j (ENSMSIG00000010303) #27	Tafa3 (ENSMSIG00000010329) #28	ENSMSIG00000010355	Slc16a1 (ENSMSIG00000010368) ##29	Lrig2 (ENSMSIG00000010388)	ENSMSIG00000010520	Magi3 (ENSMSIG00000010539)	Phtf1 (ENSMSIG00000010806)	Rsbn1 (ENSMSIG00000011020)	Ptpn22 (ENSMSIG00000011040)
spretus	MODERN SPECIES	12	Chia1 (MGP_SPRETEiJ_G0026434) #9	Chil5 (MGP_SPRETEiJ_G0026433) #9	Pifo (MGP_SPRETEiJ_G0026432) #10	Ovgp1 (MGP_SPRETEiJ_G0026431) #11	Wdr77 (MGP_SPRETEiJ_G0026430) #12	Atp5pb (MGP_SPRETEiJ_G0026429) #13	I830077J02Rik (MGP_SPRETEiJ_G0026428) #14	Tmigd3 (MGP_SPRETEiJ_G0026427) #15	MGP_SPRETEiJ_G0026426 #16	Rap1a (MGP_SPRETEiJ_G0026425) #17	Inka2 (MGP_SPRETEiJ_G0026424) #18	Ddx20 (MGP_SPRETEiJ_G0026423) #19	Kcnd3 (MGP_SPRETEiJ_G0026422) #20	MGP_SPRETEiJ_G0026421	Cttnbp2nl (MGP_SPRETEiJ_G0026420) #21	Wnt2b (MGP_SPRETEiJ_G0026419) #22	St7l (MGP_SPRETEiJ_G0026418) #23	Capza1 (MGP_SPRETEiJ_G0026417) ##24	Mov10 (MGP_SPRETEiJ_G0026416) #25	Rhoc (MGP_SPRETEiJ_G0026415) #26	Ppm1j (MGP_SPRETEiJ_G0026414) #27	Tafa3 (MGP_SPRETEiJ_G0026413) #28	Slc16a1 (MGP_SPRETEiJ_G0026412) ##29	Lrig2 (MGP_SPRETEiJ_G0026411)	Magi3 (MGP_SPRETEiJ_G0026410)	Phtf1 (MGP_SPRETEiJ_G0026409)	Rsbn1 (MGP_SPRETEiJ_G0026408)	Ptpn22 (MGP_SPRETEiJ_G0026407)	Bcl2l15 (MGP_SPRETEiJ_G0026406)	MGP_SPRETEiJ_G0026405	MGP_SPRETEiJ_G0026404
Mouse	MODERN SPECIES	12	Chil3 (ENSMUSG00000040809) #9	Chia1 (ENSMUSG00000062778) #9	Chil5 (ENSMUSG00000043873) #9	Pifo (ENSMUSG00000010136) #10	Ovgp1 (ENSMUSG00000074340) #11	Wdr77 (ENSMUSG00000000561) #12	Atp5pb (ENSMUSG00000000563) #13	I830077J02Rik (ENSMUSG00000074342) #14	Tmigd3 (ENSMUSG00000074344) #15	Adora3 (ENSMUSG00000000562) #16	Rap1a (ENSMUSG00000068798) #17	Inka2 (ENSMUSG00000048458) #18	Ddx20 (ENSMUSG00000027905) #19	Kcnd3 (ENSMUSG00000040896) #20	Cttnbp2nl (ENSMUSG00000062127) #21	Wnt2b (ENSMUSG00000027840) #22	St7l (ENSMUSG00000045576) #23	Capza1 (ENSMUSG00000070372) ##24	Mov10 (ENSMUSG00000002227) #25	Rhoc (ENSMUSG00000002233) #26	Ppm1j (ENSMUSG00000002228) #27	Tafa3 (ENSMUSG00000055865) #28	Slc16a1 (ENSMUSG00000032902) ##29	Lrig2 (ENSMUSG00000032913)	Magi3 (ENSMUSG00000052539)	Phtf1 (ENSMUSG00000058388)	Rsbn1 (ENSMUSG00000044098)	Ptpn22 (ENSMUSG00000027843)	Bcl2l15 (ENSMUSG00000044165)	Ap4b1 (ENSMUSG00000032952)	Dclre1b (ENSMUSG00000027845)
Ryukyu mouse	MODERN SPECIES	12	Chia1 (MGP_CAROLIEiJ_G0025485) #9	Chil5 (MGP_CAROLIEiJ_G0025484) #9	Pifo (MGP_CAROLIEiJ_G0025483) #10	Ovgp1 (MGP_CAROLIEiJ_G0025482) #11	Wdr77 (MGP_CAROLIEiJ_G0025481) #12	Atp5pb (MGP_CAROLIEiJ_G0025480) #13	I830077J02Rik (MGP_CAROLIEiJ_G0025479) #14	Tmigd3 (MGP_CAROLIEiJ_G0025478) #15	Adora3 (MGP_CAROLIEiJ_G0025477) #16	Rap1a (MGP_CAROLIEiJ_G0025476) #17	Inka2 (MGP_CAROLIEiJ_G0025475) #18	Ddx20 (MGP_CAROLIEiJ_G0025474) #19	Kcnd3 (MGP_CAROLIEiJ_G0025473) #20	MGP_CAROLIEiJ_G0025472	Cttnbp2nl (MGP_CAROLIEiJ_G0025471) #21	Wnt2b (MGP_CAROLIEiJ_G0025470) #22	St7l (MGP_CAROLIEiJ_G0025469) #23	Capza1 (MGP_CAROLIEiJ_G0025468) ##24	Mov10 (MGP_CAROLIEiJ_G0025467) #25	Rhoc (MGP_CAROLIEiJ_G0025466) #26	Ppm1j (MGP_CAROLIEiJ_G0025465) #27	Tafa3 (MGP_CAROLIEiJ_G0025464) #28	Slc16a1 (MGP_CAROLIEiJ_G0025463) ##29	Lrig2 (MGP_CAROLIEiJ_G0025462)	Magi3 (MGP_CAROLIEiJ_G0025461)	Phtf1 (MGP_CAROLIEiJ_G0025460)	Rsbn1 (MGP_CAROLIEiJ_G0025459)	Ptpn22 (MGP_CAROLIEiJ_G0025458)	Bcl2l15 (MGP_CAROLIEiJ_G0025457)	MGP_CAROLIEiJ_G0025456	MGP_CAROLIEiJ_G0025455
Shrew mouse	MODERN SPECIES	17	Chia1 (MGP_PahariEiJ_G0026930) #9	Chil5 (MGP_PahariEiJ_G0026929) #9	Pifo (MGP_PahariEiJ_G0026928) #10	Ovgp1 (MGP_PahariEiJ_G0026927) #11	Wdr77 (MGP_PahariEiJ_G0026926) #12	Atp5pb (MGP_PahariEiJ_G0026925) #13	I830077J02Rik (MGP_PahariEiJ_G0026924) #14	Tmigd3 (MGP_PahariEiJ_G0026923) #15	Adora3 (MGP_PahariEiJ_G0026922) #16	Rap1a (MGP_PahariEiJ_G0026921) #17	Inka2 (MGP_PahariEiJ_G0026920) #18	Ddx20 (MGP_PahariEiJ_G0026919) #19	Kcnd3 (MGP_PahariEiJ_G0026918) #20	MGP_PahariEiJ_G0026917	Cttnbp2nl (MGP_PahariEiJ_G0026916) #21	Wnt2b (MGP_PahariEiJ_G0026915) #22	St7l (MGP_PahariEiJ_G0026914) #23	Capza1 (MGP_PahariEiJ_G0026913) ##24	Mov10 (MGP_PahariEiJ_G0026912) #25	Rhoc (MGP_PahariEiJ_G0026911) #26	Ppm1j (MGP_PahariEiJ_G0026910) #27	Tafa3 (MGP_PahariEiJ_G0026909) #28	Slc16a1 (MGP_PahariEiJ_G0026908) ##29	Lrig2 (MGP_PahariEiJ_G0026907)	Magi3 (MGP_PahariEiJ_G0026906)	Phtf1 (MGP_PahariEiJ_G0026905)	Rsbn1 (MGP_PahariEiJ_G0026904)	MGP_PahariEiJ_G0026903	Ptpn22 (MGP_PahariEiJ_G0026902)	Bcl2l15 (MGP_PahariEiJ_G0026901)	MGP_PahariEiJ_G0026900
Rat	MODERN SPECIES	11	Prdx1l1 (ENSRNOG00000017695)	AABR07012788.1 (ENSRNOG00000051068) #9	Pifo (ENSRNOG00000016842) #10	Wdr77 (ENSRNOG00000016394) #12	Atp5pb (ENSRNOG00000064742) #13	C2h1orf162 (ENSRNOG00000070434) #14	Adora3 (ENSRNOG00000015788) #16	Tmigd3 (ENSRNOG00000043375) #15	Rap1a (ENSRNOG00000032463) #17	Inka2 (ENSRNOG00000015691) #18	Ddx20 (ENSRNOG00000015274) #19	Kcnd3 (ENSRNOG00000014686) #20	ENSRNOG00000066674	ENSRNOG00000068611	Cttnbp2nl (ENSRNOG00000014479) #21	Wnt2b (ENSRNOG00000014385) #22	St7l (ENSRNOG00000014002) #23	Capza1 (ENSRNOG00000013538) ##24	Mov10 (ENSRNOG00000012946) #25	Rhoc (ENSRNOG00000012630) #26	Ppm1j (ENSRNOG00000012481) #27	Tafa3 (ENSRNOG00000030253) #28	Slc16a1 (ENSRNOG00000019996) ##29	Lrig2 (ENSRNOG00000019957)	Rplp0l1 (ENSRNOG00000031358)	AABR07012763.1 (ENSRNOG00000057707)	Magi3 (ENSRNOG00000019885)	Phtf1 (ENSRNOG00000019785)	Rsbn1 (ENSRNOG00000019671)	Ptpn22 (ENSRNOG00000019614)	Bcl2l15 (ENSRNOG00000037149)
Upper Galilee mountains blind mole rat	MODERN SPECIES	868					Ovgp1 (ENSNGAG00000023031) #11	ENSNGAG00000003051 #12	ENSNGAG00000023617 #13	I830077J02Rik (ENSNGAG00000018819) #14	Tmigd3 (ENSNGAG00000021259) #15	Adora3 (ENSNGAG00000001830) #16	Rap1a (ENSNGAG00000022775) #17	Inka2 (ENSNGAG00000015197) #18	Ddx20 (ENSNGAG00000022953) #19	Kcnd3 (ENSNGAG00000011906) #20	Cttnbp2nl (ENSNGAG00000021422) #21	Wnt2b (ENSNGAG00000016171) #22	St7l (ENSNGAG00000024221) #23	ENSNGAG00000022738 ##24	Mov10 (ENSNGAG00000021868) #25	ENSNGAG00000013328 #26	Ppm1j (ENSNGAG00000021142) #27	Tafa3 (ENSNGAG00000018382) #28	Slc16a1 (ENSNGAG00000014061) ##29	Lrig2 (ENSNGAG00000010221)	Magi3 (ENSNGAG00000011689)	ENSNGAG00000016204	Phtf1 (ENSNGAG00000015016)	Rsbn1 (ENSNGAG00000019425)	ENSNGAG00000017059	Bcl2l15 (ENSNGAG00000023256)	Ap4b1 (ENSNGAG00000003659)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Long-tailed chinchilla	MODERN SPECIES	142	DRAM2 (ENSCLAG00000007313)	CEPT1 (ENSCLAG00000006226) #7	DENND2D (ENSCLAG00000005887) #8	PIFO (ENSCLAG00000007375) #10	OVGP1 (ENSCLAG00000005245) #11	WDR77 (ENSCLAG00000005791) #12	ATP5PB (ENSCLAG00000006182) #13	C1orf162 (ENSCLAG00000009693) #14	ENSCLAG00000009052 #15	ADORA3 (ENSCLAG00000006054) #16	RAP1A (ENSCLAG00000006589) #17	INKA2 (ENSCLAG00000007395) #18	DDX20 (ENSCLAG00000008874) #19	KCND3 (ENSCLAG00000005748) #20	CTTNBP2NL (ENSCLAG00000006818) #21	WNT2B (ENSCLAG00000005379) #22	ST7L (ENSCLAG00000007732) #23	CAPZA1 (ENSCLAG00000007602) ##24	MOV10 (ENSCLAG00000008493) #25	RHOC (ENSCLAG00000004444) #26	PPM1J (ENSCLAG00000005118) #27	TAFA3 (ENSCLAG00000005391) #28	SLC16A1 (ENSCLAG00000006864) ##29	LRIG2 (ENSCLAG00000004883)	MAGI3 (ENSCLAG00000005341)	PHTF1 (ENSCLAG00000010050)	RSBN1 (ENSCLAG00000008858)	ENSCLAG00000009628	BCL2L15 (ENSCLAG00000013554)	AP4B1 (ENSCLAG00000006193)	HIPK1 (ENSCLAG00000004892)
Degu	MODERN SPECIES	181	ENSODEG00000008262 #7	DENND2D (ENSODEG00000008171) #8	ENSODEG00000019481	PIFO (ENSODEG00000007650) #10	OVGP1 (ENSODEG00000010601) #11	WDR77 (ENSODEG00000008128) #12	ENSODEG00000009577 #13	ENSODEG00000008789 #15	ADORA3 (ENSODEG00000007861) #16	ENSODEG00000007477	ENSODEG00000008652 #17	INKA2 (ENSODEG00000009526) #18	ENSODEG00000007653 #19	KCND3 (ENSODEG00000008613) #20	CTTNBP2NL (ENSODEG00000008068) #21	WNT2B (ENSODEG00000008783) #22	ST7L (ENSODEG00000007468) #23	ENSODEG00000007252 ##24	MOV10 (ENSODEG00000010401) #25	ENSODEG00000008244 #26	PPM1J (ENSODEG00000007627) #27	TAFA3 (ENSODEG00000009074) #28	SLC16A1 (ENSODEG00000007835) ##29	LRIG2 (ENSODEG00000012585)	ENSODEG00000009254	ENSODEG00000019722	MAGI3 (ENSODEG00000007160)	PHTF1 (ENSODEG00000007432)	ENSODEG00000008326 #7	RSBN1 (ENSODEG00000007878)	ENSODEG00000007130
Guinea pig	MODERN SPECIES	2	ENSCPOG00000039442	DRAM2 (ENSCPOG00000003496)	CEPT1 (ENSCPOG00000011067) #7	DENND2D (ENSCPOG00000003677) #8	PIFO (ENSCPOG00000033762) #10	OVGP1 (ENSCPOG00000000902) #11	WDR77 (ENSCPOG00000025009) #12	ATP5PB (ENSCPOG00000014070) #13	C1orf162 (ENSCPOG00000025561) #14	ADORA3 (ENSCPOG00000032151) #16	RAP1A (ENSCPOG00000032437) #17	INKA2 (ENSCPOG00000001816) #18	DDX20 (ENSCPOG00000032340) #19	KCND3 (ENSCPOG00000001820) #20	CTTNBP2NL (ENSCPOG00000040118) #21	WNT2B (ENSCPOG00000000194) #22	ST7L (ENSCPOG00000014528) #23	CAPZA1 (ENSCPOG00000014532) ##24	MOV10 (ENSCPOG00000014537) #25	RHOC (ENSCPOG00000014541) #26	PPM1J (ENSCPOG00000004145) #27	TAFA3 (ENSCPOG00000036826) #28	SLC16A1 (ENSCPOG00000022989) ##29	LRIG2 (ENSCPOG00000006833)	MAGI3 (ENSCPOG00000006971)	PHTF1 (ENSCPOG00000006981)	RSBN1 (ENSCPOG00000006990)	ENSCPOG00000037879	AP4B1 (ENSCPOG00000001286)	ENSCPOG00000032000	HIPK1 (ENSCPOG00000001289)
Naked mole-rat female	MODERN SPECIES	10	ENSHGLG00000036915 #11	WDR77 (ENSHGLG00000008077) #12	ENSHGLG00000004364 #13	ENSHGLG00000041308	ENSHGLG00000004637 #15	ADORA3 (ENSHGLG00000006832) #16	RAP1A (ENSHGLG00000008139) #17	FAM212B (ENSHGLG00000032533) #18	DDX20 (ENSHGLG00000014848) #19	ENSHGLG00000017438 #20	ENSHGLG00000038826	ENSHGLG00000017681	ENSHGLG00000042226	ENSHGLG00000016608 #21	ENSHGLG00000003197	WNT2B (ENSHGLG00000014959) #22	ST7L (ENSHGLG00000018040) #23	ENSHGLG00000045694 ##24	MOV10 (ENSHGLG00000004970) #25	RHOC (ENSHGLG00000032070) #26	PPM1J (ENSHGLG00000009548) #27	TAFA3 (ENSHGLG00000018506) #28	ENSHGLG00000034195 ##29	ENSHGLG00000016346 ##29	LRIG2 (ENSHGLG00000016354)	ENSHGLG00000035626	MAGI3 (ENSHGLG00000005209)	PHTF1 (ENSHGLG00000015252)	RSBN1 (ENSHGLG00000009455)	ENSHGLG00000033150	PTPN22 (ENSHGLG00000010840)
Sciuridae	ANCESTRAL SPECIES		ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251.n #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.f.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Marmotini	ANCESTRAL SPECIES	62				ENSGT00390000001017.e #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.ib.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251.n #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.f.a #24	ENSGT00950000183119.a.e.a.d.g ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a.q #26	ENSGT00940000160965 #27	ENSGT00940000155644.c.a #28	ENSGT00940000155644.c.b #28	ENSGT00940000154955.e.b #29	ENSGT00940000155644.d #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a
Alpin marmot	MODERN SPECIES	79		ENSMMMG00000011580 #9	ENSMMMG00000011608 #10	ENSMMMG00000011617 #10	ENSMMMG00000011629 #11	WDR77 (ENSMMMG00000011929) #12	ENSMMMG00000011946 #13	C1orf162 (ENSMMMG00000011956) #14	ENSMMMG00000011967 #15	ADORA3 (ENSMMMG00000011975) #16	RAP1A (ENSMMMG00000012006) #17	INKA2 (ENSMMMG00000012022) #18	DDX20 (ENSMMMG00000012030) #19	KCND3 (ENSMMMG00000012044) #20	CTTNBP2NL (ENSMMMG00000012103) #21	WNT2B (ENSMMMG00000012112) #22	ST7L (ENSMMMG00000012123) #23	CAPZA1 (ENSMMMG00000012224) #24	MOV10 (ENSMMMG00000012241) #25	ENSMMMG00000012297 #26	ENSMMMG00000012304 #27	ENSMMMG00000012316 #28	ENSMMMG00000012321 #29	SLC16A1 (ENSMMMG00000012618) ##29	LRIG2 (ENSMMMG00000012626)	MAGI3 (ENSMMMG00000012706)	PHTF1 (ENSMMMG00000012813)	RSBN1 (ENSMMMG00000013010)	PTPN22 (ENSMMMG00000013024)	BCL2L15 (ENSMMMG00000013046)	AP4B1 (ENSMMMG00000013063)
Marmotini_b	ANCESTRAL SPECIES	74				ENSGT00390000001017.e #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.ib.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251.n #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.g ##24	ENSGT00940000156024.g #25	ENSGT00950000182945.b.a.a.b.a.q #26	ENSGT00940000160965 #27	ENSGT00940000155644.c.a #28	ENSGT00940000154955.e.b #29	ENSGT00940000155644.d #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096
Arctic ground squirrel	MODERN SPECIES	134			ENSUPAG00010022009	ENSUPAG00010022012 #11	WDR77 (ENSUPAG00010022061) #12	ATP5PB (ENSUPAG00010022065) #13	C1orf162 (ENSUPAG00010022067) #14	ENSUPAG00010022070 #15	ADORA3 (ENSUPAG00010022072) #16	RAP1A (ENSUPAG00010022075) #17	INKA2 (ENSUPAG00010022078) #18	DDX20 (ENSUPAG00010022080) #19	KCND3 (ENSUPAG00010022085) #20	CTTNBP2NL (ENSUPAG00010022096) #21	ST7L (ENSUPAG00010022108) #23	WNT2B (ENSUPAG00010022130) #22	CAPZA1 (ENSUPAG00010022133) ##24	MOV10 (ENSUPAG00010022136) #25	PPM1J (ENSUPAG00010022145) #27	TAFA3 (ENSUPAG00010022150) #28	ENSUPAG00010022155 #29	SLC16A1 (ENSUPAG00010022230) ##29	LRIG2 (ENSUPAG00010022233)	ENSUPAG00010022242	MAGI3 (ENSUPAG00010022248)	PHTF1 (ENSUPAG00010022262)	RSBN1 (ENSUPAG00010022293)	AP4B1 (ENSUPAG00010022296)	DCLRE1B (ENSUPAG00010022313)	HIPK1 (ENSUPAG00010022316)	OLFML3 (ENSUPAG00010022319)
Squirrel	MODERN SPECIES	290			PIFO (ENSSTOG00000031578) #10	OVGP1 (ENSSTOG00000023994) #11	WDR77 (ENSSTOG00000025877) #12	ENSSTOG00000007630 #13	ENSSTOG00000028567 #14	ENSSTOG00000000483 #15	ADORA3 (ENSSTOG00000025181) #16	RAP1A (ENSSTOG00000027847) #17	INKA2 (ENSSTOG00000001760) #18	DDX20 (ENSSTOG00000029089) #19	KCND3 (ENSSTOG00000001773) #20	CTTNBP2NL (ENSSTOG00000011437) #21	ST7L (ENSSTOG00000020270) #23	WNT2B (ENSSTOG00000011442) #22	ENSSTOG00000015956 #24	ENSSTOG00000015963 #25	ENSSTOG00000022123 #26	PPM1J (ENSSTOG00000015975) #27	TAFA3 (ENSSTOG00000032343) #28	SLC16A1 (ENSSTOG00000006137) ##29	LRIG2 (ENSSTOG00000000595)	MAGI3 (ENSSTOG00000005528)	PHTF1 (ENSSTOG00000005566)	RSBN1 (ENSSTOG00000005592)	PTPN22 (ENSSTOG00000014683)	BCL2L15 (ENSSTOG00000014693)	AP4B1 (ENSSTOG00000014697)	DCLRE1B (ENSSTOG00000014699)	HIPK1 (ENSSTOG00000020558)
Eurasian red squirrel	MODERN SPECIES		DRAM2 (ENSSVLG00005016915)	CEPT1 (ENSSVLG00005016962) #7	DENND2D (ENSSVLG00005017048) #8	ENSSVLG00005017351 #9	PIFO (ENSSVLG00005017626) #10	OVGP1 (ENSSVLG00005017787) #11	WDR77 (ENSSVLG00005017918) #12	ENSSVLG00005017977 #13	C1orf162 (ENSSVLG00005018121) #14	TMIGD3 (ENSSVLG00005018210) #15	ENSSVLG00005018277 #17	INKA2 (ENSSVLG00005018314) #18	DDX20 (ENSSVLG00005018335) #19	KCND3 (ENSSVLG00005018411) #20	CTTNBP2NL (ENSSVLG00005018565) #21	WNT2B (ENSSVLG00005018609) #22	ST7L (ENSSVLG00005018716) #23	ENSSVLG00005018884 #24	MOV10 (ENSSVLG00005019002) #25	RHOC (ENSSVLG00005019061) #26	PPM1J (ENSSVLG00005019163) #27	TAFA3 (ENSSVLG00005019351) #28	ENSSVLG00005019446 #29	SLC16A1 (ENSSVLG00005019541) ##29	LRIG2 (ENSSVLG00005019679)	ENSSVLG00005019855	MAGI3 (ENSSVLG00005019925)	PHTF1 (ENSSVLG00005020069)	RSBN1 (ENSSVLG00005020283)	PTPN22 (ENSSVLG00005020484)	BCL2L15 (ENSSVLG00005021402)
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00940000163351	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00930000151073 #15	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Rabbit	MODERN SPECIES	4	CHI3L2 (ENSOCUG00000015772)	PIFO (ENSOCUG00000028213) #10	OVGP1 (ENSOCUG00000015946) #11	WDR77 (ENSOCUG00000007801) #12	ENSOCUG00000007809 #13	C1orf162 (ENSOCUG00000007816) #14	ADORA3 (ENSOCUG00000023239) #16	ENSOCUG00000007822 #15	ENSOCUG00000024498	RAP1A (ENSOCUG00000030320) #17	INKA2 (ENSOCUG00000017680) #18	DDX20 (ENSOCUG00000025939) #19	KCND3 (ENSOCUG00000014279) #20	ENSOCUG00000023372	CTTNBP2NL (ENSOCUG00000023315) #21	WNT2B (ENSOCUG00000000266) #22	ENSOCUG00000000269 #23	CAPZA1 (ENSOCUG00000000270) #24	MOV10 (ENSOCUG00000000276) #25	ENSOCUG00000027213 #26	PPM1J (ENSOCUG00000006310) #27	TAFA3 (ENSOCUG00000000280) #28	SLC16A1 (ENSOCUG00000016776) ##29	ENSOCUG00000035073	LRIG2 (ENSOCUG00000010256)	ENSOCUG00000024668	MAGI3 (ENSOCUG00000017382)	PHTF1 (ENSOCUG00000003752)	RSBN1 (ENSOCUG00000003759)	PTPN22 (ENSOCUG00000003763)	BCL2L15 (ENSOCUG00000003775)
Pika	MODERN SPECIES	1795															CTTNBP2NL (ENSOPRG00000009157) #21	WNT2B (ENSOPRG00000009177) #22	ST7L (ENSOPRG00000009188) #23	CAPZA1 (ENSOPRG00000009218) #24	MOV10 (ENSOPRG00000009237) #25	RHOC (ENSOPRG00000009284) #26
Tree shrew	MODERN SPECIES	1539																WNT2B (ENSTBEG00000015379) #22	ST7L (ENSTBEG00000015412) #23
Primates	ANCESTRAL SPECIES	4	ENSGT00940000163351	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00950000182931.A #8	ENSGT00940000163351	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00390000010711 #12	ENSGT00390000001958.p #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Lemuriformes	ANCESTRAL SPECIES		ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00940000163351	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00390000010711 #12	ENSGT00390000001958.p #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Mouse lemur	MODERN SPECIES	11	MSH4 (ENSMICG00000017811)	ENSMICG00000017810	ACADM (ENSMICG00000017809)	SLC44A5 (ENSMICG00000012206)	LHX8 (ENSMICG00000012199)	TYW3 (ENSMICG00000015883)	CRYZ (ENSMICG00000015873)	ENSMICG00000000880	ADORA3 (ENSMICG00000031902) #16	ENSMICG00000011501 #17	INKA2 (ENSMICG00000033017) #18	DDX20 (ENSMICG00000011509) #19	KCND3 (ENSMICG00000046146) #20	CTTNBP2NL (ENSMICG00000009868) #21	ENSMICG00000017384	WNT2B (ENSMICG00000003171) #22	ST7L (ENSMICG00000003173) #23	CAPZA1 (ENSMICG00000003182) #24	MOV10 (ENSMICG00000003187) #25	RHOC (ENSMICG00000003200) #26	PPM1J (ENSMICG00000035392) #27	TAFA3 (ENSMICG00000003208) #28	ENSMICG00000012818 ##29	ENSMICG00000030251	LRIG2 (ENSMICG00000001333)	MAGI3 (ENSMICG00000042078)	PHTF1 (ENSMICG00000001360)	RSBN1 (ENSMICG00000001369)	PTPN22 (ENSMICG00000001385)	BCL2L15 (ENSMICG00000044441)	AP4B1 (ENSMICG00000001394)
Lemuriformes_a	ANCESTRAL SPECIES	31	ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00940000163351	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00390000010711 #12	ENSGT00390000001958.p #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Coquerels sifaka	MODERN SPECIES	312															CTTNBP2NL (ENSPCOG00000018565) #21	WNT2B (ENSPCOG00000000657) #22	ST7L (ENSPCOG00000026016) #23	CAPZA1 (ENSPCOG00000016605) #24	MOV10 (ENSPCOG00000005180) #25	RHOC (ENSPCOG00000016989) #26	PPM1J (ENSPCOG00000023155) #27	TAFA3 (ENSPCOG00000026544) #28	ENSPCOG00000024992 #29	SLC16A1 (ENSPCOG00000000196) ##29	ENSPCOG00000014866	LRIG2 (ENSPCOG00000022796)	MAGI3 (ENSPCOG00000018778)	PHTF1 (ENSPCOG00000015525)	RSBN1 (ENSPCOG00000023227)	PTPN22 (ENSPCOG00000015770)	BCL2L15 (ENSPCOG00000028135)
Greater bamboo lemur	MODERN SPECIES	507	DENND2D (ENSPSMG00000010765) #8	ENSPSMG00000010739	CHI3L2 (ENSPSMG00000010734)	PIFO (ENSPSMG00000010697) #10	ENSPSMG00000010689	WDR77 (ENSPSMG00000010667) #12	ATP5PB (ENSPSMG00000010639) #13	C1orf162 (ENSPSMG00000010617) #14	TMIGD3 (ENSPSMG00000010613) #15	RAP1A (ENSPSMG00000010516) #17	ENSPSMG00000010468	DDX20 (ENSPSMG00000010456) #19	ENSPSMG00000010429	KCND3 (ENSPSMG00000010421) #20	CTTNBP2NL (ENSPSMG00000010396) #21	WNT2B (ENSPSMG00000010388) #22	ST7L (ENSPSMG00000010180) #23	CAPZA1 (ENSPSMG00000010026) #24	MOV10 (ENSPSMG00000009983) #25	RHOC (ENSPSMG00000009860) #26	PPM1J (ENSPSMG00000009821) #27	TAFA3 (ENSPSMG00000009787) #28
Bushbaby	MODERN SPECIES	188					WDR77 (ENSOGAG00000030741) #12	ENSOGAG00000011486 #13	C1orf162 (ENSOGAG00000008150) #14	TMIGD3 (ENSOGAG00000033613) #15	ENSOGAG00000030415 #16	ENSOGAG00000027410	RAP1A (ENSOGAG00000030644) #17	INKA2 (ENSOGAG00000010502) #18	DDX20 (ENSOGAG00000010503) #19	KCND3 (ENSOGAG00000010504) #20	CTTNBP2NL (ENSOGAG00000033049) #21	WNT2B (ENSOGAG00000014065) #22	ST7L (ENSOGAG00000014069) #23	CAPZA1 (ENSOGAG00000014074) #24	MOV10 (ENSOGAG00000014080) #25	RHOC (ENSOGAG00000027678) #26	PPM1J (ENSOGAG00000014088) #27	TAFA3 (ENSOGAG00000014095) #28	SLC16A1 (ENSOGAG00000004969) ##29	LRIG2 (ENSOGAG00000003959)	MAGI3 (ENSOGAG00000000693)	PHTF1 (ENSOGAG00000000695)	RSBN1 (ENSOGAG00000013910)	PTPN22 (ENSOGAG00000013912)	BCL2L15 (ENSOGAG00000013916)	AP4B1 (ENSOGAG00000026777)	DCLRE1B (ENSOGAG00000013917)
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00940000154720.b	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00940000154720.b.pb	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00940000154720.b.pb	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00910000145979	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000163351	ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00910000145979	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00390000013102.e.a.m.b	ENSGT00390000000475.sb.u	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000163351	ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00390000013102.e.a.m.b	ENSGT00390000000475.sb.u.e	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000163351	ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00390000013102.e.a.m.b	ENSGT00390000000475.sb.u.e	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00940000163351	ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Pan	ANCESTRAL SPECIES		ENSGT00950000182931.A #8	ENSGT00940000163351	ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00910000148129	ENSGT00940000163704.h	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096
Chimpanzee	MODERN SPECIES		DENND2D (ENSPTRG00000001090) #8	CHI3L2 (ENSPTRG00000001092)	ENSPTRG00000045154 ##9	CHIA (ENSPTRG00000049663) #9	PIFO (ENSPTRG00000001095) #10	OVGP1 (ENSPTRG00000001097) #11	WDR77 (ENSPTRG00000001098) #12	ATP5PB (ENSPTRG00000001099) #13	C1H1orf162 (ENSPTRG00000001100) #14	TMIGD3 (ENSPTRG00000001101) #15	RAP1A (ENSPTRG00000001102) #17	INKA2 (ENSPTRG00000001104) #18	DDX20 (ENSPTRG00000001105) #19	KCND3 (ENSPTRG00000001106) #20	CTTNBP2NL (ENSPTRG00000001107) #21	WNT2B (ENSPTRG00000001108) #22	ST7L (ENSPTRG00000001109) #23	CAPZA1 (ENSPTRG00000001110) #24	MOV10 (ENSPTRG00000001111) #25	RHOC (ENSPTRG00000001112) #26	PPM1J (ENSPTRG00000001113) #27	TAFA3 (ENSPTRG00000001114) #28	ENSPTRG00000051943	ENSPTRG00000043085	SLC16A1 (ENSPTRG00000001116) ##29	LRIG2 (ENSPTRG00000001120)	ENSPTRG00000051751	ENSPTRG00000049946	ENSPTRG00000052291	MAGI3 (ENSPTRG00000001121)	PHTF1 (ENSPTRG00000001123)
Bonobo	MODERN SPECIES		DENND2D (ENSPPAG00000037282) #8	CHI3L2 (ENSPPAG00000038288)	ENSPPAG00000034524 ##9	CHIA (ENSPPAG00000022214) #9	PIFO (ENSPPAG00000005642) #10	OVGP1 (ENSPPAG00000025014) #11	WDR77 (ENSPPAG00000038773) #12	ENSPPAG00000040192 #13	C1orf162 (ENSPPAG00000037238) #14	TMIGD3 (ENSPPAG00000035113) #15	RAP1A (ENSPPAG00000040050) #17	INKA2 (ENSPPAG00000021509) #18	DDX20 (ENSPPAG00000031680) #19	KCND3 (ENSPPAG00000039961) #20	CTTNBP2NL (ENSPPAG00000028003) #21	WNT2B (ENSPPAG00000026756) #22	ST7L (ENSPPAG00000037378) #23	CAPZA1 (ENSPPAG00000033937) #24	MOV10 (ENSPPAG00000031079) #25	RHOC (ENSPPAG00000032447) #26	PPM1J (ENSPPAG00000023616) #27	TAFA3 (ENSPPAG00000026811) #28	ENSPPAG00000002404	ENSPPAG00000028885	SLC16A1 (ENSPPAG00000031036) ##29	ENSPPAG00000038598	PHTF1 (ENSPPAG00000028420)	RSBN1 (ENSPPAG00000028704)	PTPN22 (ENSPPAG00000036012)	BCL2L15 (ENSPPAG00000039569)	AP4B1 (ENSPPAG00000038448)
Human	MODERN SPECIES		DENND2D (ENSG00000162777) #8	CHI3L2 (ENSG00000064886)	CHIA (ENSG00000134216) #9	PIFO (ENSG00000173947) #10	OVGP1 (ENSG00000085465) #11	WDR77 (ENSG00000116455) #12	ATP5PB (ENSG00000116459) #13	C1orf162 (ENSG00000143110) #14	TMIGD3 (ENSG00000121933) #15	ADORA3 (ENSG00000282608) #16	RAP1A (ENSG00000116473) #17	INKA2 (ENSG00000197852) #18	DDX20 (ENSG00000064703) #19	KCND3 (ENSG00000171385) #20	CTTNBP2NL (ENSG00000143079) #21	WNT2B (ENSG00000134245) #22	ST7L (ENSG00000007341) #23	CAPZA1 (ENSG00000116489) #24	MOV10 (ENSG00000155363) #25	RHOC (ENSG00000155366) #26	ENSG00000271810	PPM1J (ENSG00000155367) #27	TAFA3 (ENSG00000184599) #28	SLC16A1 (ENSG00000155380) ##29	LRIG2 (ENSG00000198799)	MAGI3 (ENSG00000081026)	PHTF1 (ENSG00000116793)	RSBN1 (ENSG00000081019)	PTPN22 (ENSG00000134242)	BCL2L15 (ENSG00000188761)	AP4B1 (ENSG00000134262)
Gorilla	MODERN SPECIES		ENSGGOG00000016018	ENSGGOG00000039363	ENSGGOG00000039604 ##9	CHIA (ENSGGOG00000008523) #9	PIFO (ENSGGOG00000008535) #10	OVGP1 (ENSGGOG00000005204) #11	WDR77 (ENSGGOG00000005208) #12	ATP5PB (ENSGGOG00000005215) #13	C1orf162 (ENSGGOG00000005921) #14	TMIGD3 (ENSGGOG00000005924) #15	ENSGGOG00000003037	INKA2 (ENSGGOG00000027861) #18	DDX20 (ENSGGOG00000015576) #19	KCND3 (ENSGGOG00000015582) #20	CTTNBP2NL (ENSGGOG00000002231) #21	WNT2B (ENSGGOG00000003613) #22	ST7L (ENSGGOG00000034881) #23	ENSGGOG00000022483	ENSGGOG00000038612	MOV10 (ENSGGOG00000002731) #25	RHOC (ENSGGOG00000002741) #26	PPM1J (ENSGGOG00000002743) #27	TAFA3 (ENSGGOG00000002749) #28	ENSGGOG00000037218	SLC16A1 (ENSGGOG00000015526) ##29	ENSGGOG00000037334	LRIG2 (ENSGGOG00000022639)	ENSGGOG00000023056	ENSGGOG00000026153	MAGI3 (ENSGGOG00000006209)	PHTF1 (ENSGGOG00000014726)
Orangutan	MODERN SPECIES		CHI3L2 (ENSPPYG00000001038)	ENSPPYG00000001037 ##9	CHIA (ENSPPYG00000001036) #9	ENSPPYG00000001035 #10	ENSPPYG00000037725	OVGP1 (ENSPPYG00000001034) #11	WDR77 (ENSPPYG00000001033) #12	C1orf162 (ENSPPYG00000001031) #14	ATP5PB (ENSPPYG00000001032) #13	TMIGD3 (ENSPPYG00000001030) #15	RAP1A (ENSPPYG00000001028) #17	INKA2 (ENSPPYG00000001027) #18	DDX20 (ENSPPYG00000001026) #19	KCND3 (ENSPPYG00000001025) #20	CTTNBP2NL (ENSPPYG00000001024) #21	WNT2B (ENSPPYG00000001023) #22	ST7L (ENSPPYG00000001022) #23	CAPZA1 (ENSPPYG00000001021) #24	MOV10 (ENSPPYG00000001020) #25	RHOC (ENSPPYG00000001018) #27	ENSPPYG00000001017 #28	ENSPPYG00000035274	ENSPPYG00000001016	ENSPPYG00000041354	SLC16A1 (ENSPPYG00000001014) ##29	LRIG2 (ENSPPYG00000001013)	ENSPPYG00000034824	ENSPPYG00000032770	MAGI3 (ENSPPYG00000001011)	PHTF1 (ENSPPYG00000001010)	RSBN1 (ENSPPYG00000001009)
Gibbon	MODERN SPECIES	2	ENSNLEG00000030395 ##9	CHIA (ENSNLEG00000003831) #9	PIFO (ENSNLEG00000003881) #10	ENSNLEG00000033638	OVGP1 (ENSNLEG00000003907) #11	WDR77 (ENSNLEG00000003918) #12	ATP5PB (ENSNLEG00000003971) #13	C1orf162 (ENSNLEG00000027786) #14	TMIGD3 (ENSNLEG00000028673) #15	RAP1A (ENSNLEG00000004018) #17	INKA2 (ENSNLEG00000004037) #18	DDX20 (ENSNLEG00000004040) #19	KCND3 (ENSNLEG00000004095) #20	ENSNLEG00000033662	CTTNBP2NL (ENSNLEG00000004112) #21	WNT2B (ENSNLEG00000004104) #22	ENSNLEG00000004065	ST7L (ENSNLEG00000004126) #23	CAPZA1 (ENSNLEG00000028431) #24	MOV10 (ENSNLEG00000004226) #25	RHOC (ENSNLEG00000004234) #26	PPM1J (ENSNLEG00000004240) #27	ENSNLEG00000004286	SLC16A1 (ENSNLEG00000004297) ##29	LRIG2 (ENSNLEG00000004313)	MAGI3 (ENSNLEG00000004350)	PHTF1 (ENSNLEG00000004383)	RSBN1 (ENSNLEG00000004426)	PTPN22 (ENSNLEG00000004445)	BCL2L15 (ENSNLEG00000027711)	AP4B1 (ENSNLEG00000004580)
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00940000154720.b.pb	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00910000145979	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00510000047030.xb.a.d	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000163351	ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a #13	ENSGT00390000015005 #14	ENSGT00950000182857.a.a.b.a.r.a.b.b.b.a	ENSGT00930000151073 #15	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00910000145979	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00510000047030.xb.a.d	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096
Vervet Monkey	MODERN SPECIES	12	DENND2D (ENSCSAG00000001571) #8	CHI3L2 (ENSCSAG00000001572)	ENSCSAG00000001573 ##9	PIFO (ENSCSAG00000001574) #10	OVGP1 (ENSCSAG00000001575) #11	WDR77 (ENSCSAG00000001576) #12	ATP5PB (ENSCSAG00000001577) #13	C1orf162 (ENSCSAG00000001578) #14	ENSCSAG00000000170	TMIGD3 (ENSCSAG00000001579) #15	RAP1A (ENSCSAG00000001580) #17	INKA2 (ENSCSAG00000001581) #18	DDX20 (ENSCSAG00000001582) #19	KCND3 (ENSCSAG00000001583) #20	CTTNBP2NL (ENSCSAG00000001586) #21	WNT2B (ENSCSAG00000001587) #22	ST7L (ENSCSAG00000001589) #23	CAPZA1 (ENSCSAG00000001594) #24	MOV10 (ENSCSAG00000001600) #25	RHOC (ENSCSAG00000001602) #26	PPM1J (ENSCSAG00000001607) #27	TAFA3 (ENSCSAG00000001609) #28	SLC16A1 (ENSCSAG00000001611) ##29	LRIG2 (ENSCSAG00000001617)	MAGI3 (ENSCSAG00000001630)	RSBN1 (ENSCSAG00000001635)	PTPN22 (ENSCSAG00000001636)	BCL2L15 (ENSCSAG00000001637)	AP4B1 (ENSCSAG00000001639)	DCLRE1B (ENSCSAG00000001642)	HIPK1 (ENSCSAG00000001645)
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000163351	ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a #13	ENSGT00390000015005 #14	ENSGT00950000182857.a.a.b.a.r.a.b.b.b.a	ENSGT00930000151073 #15	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00910000145979	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00510000047030.xb.a.d	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00950000182931.A #8	ENSGT00940000163351	ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a.e #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00910000145979	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00510000047030.xb.a.d	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096
Olive baboon	MODERN SPECIES		CHI3L2 (ENSPANG00000004608)	ENSPANG00000011949 ##9	CHIA (ENSPANG00000015724) #9	PIFO (ENSPANG00000008849) #10	OVGP1 (ENSPANG00000016078) #11	WDR77 (ENSPANG00000012473) #12	ATP5PB (ENSPANG00000004607) #13	C1orf162 (ENSPANG00000044615) #14	TMIGD3 (ENSPANG00000013353) #15	RAP1A (ENSPANG00000013352) #17	INKA2 (ENSPANG00000005229) #18	DDX20 (ENSPANG00000017985) #19	KCND3 (ENSPANG00000009312) #20	ENSPANG00000041941	CTTNBP2NL (ENSPANG00000007192) #21	WNT2B (ENSPANG00000023529) #22	ST7L (ENSPANG00000005529) #23	CAPZA1 (ENSPANG00000016077) #24	MOV10 (ENSPANG00000011819) #25	RHOC (ENSPANG00000014084) #26	PPM1J (ENSPANG00000004417) #27	TAFA3 (ENSPANG00000031926) #28	ENSPANG00000014057	SLC16A1 (ENSPANG00000006341) ##29	LRIG2 (ENSPANG00000023528)	MAGI3 (ENSPANG00000016896)	PHTF1 (ENSPANG00000019967)	RSBN1 (ENSPANG00000019090)	PTPN22 (ENSPANG00000004483)	BCL2L15 (ENSPANG00000018739)	AP4B1 (ENSPANG00000010749)
Cercopithecinae_d	ANCESTRAL SPECIES	49	ENSGT00950000182931.A #8	ENSGT00940000163351	ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a.e #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00910000145979	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00390000013102.e.a.m.b	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096
Sooty mangabey	MODERN SPECIES	246															CTTNBP2NL (ENSCATG00000031085) #21	WNT2B (ENSCATG00000014895) #22	ENSCATG00000022037	ST7L (ENSCATG00000031918) #23	CAPZA1 (ENSCATG00000032649) #24	MOV10 (ENSCATG00000036718) #25	RHOC (ENSCATG00000045222) #26	PPM1J (ENSCATG00000013926) #27	TAFA3 (ENSCATG00000038790) #28	ENSCATG00000036800	SLC16A1 (ENSCATG00000031291) ##29	LRIG2 (ENSCATG00000029386)	ENSCATG00000041564	ENSCATG00000041691	MAGI3 (ENSCATG00000040829)	PHTF1 (ENSCATG00000041622)	RSBN1 (ENSCATG00000009799)
Drill	MODERN SPECIES	1360	DENND2D (ENSMLEG00000043757) #8	CHI3L2 (ENSMLEG00000015156)	ENSMLEG00000038064 ##9	CHIA (ENSMLEG00000043827) #9	PIFO (ENSMLEG00000030326) #10	OVGP1 (ENSMLEG00000038492) #11	WDR77 (ENSMLEG00000038080) #12	ENSMLEG00000042629 #13	C1orf162 (ENSMLEG00000032911) #14	TMIGD3 (ENSMLEG00000043418) #15	RAP1A (ENSMLEG00000028596) #17	INKA2 (ENSMLEG00000022943) #18	DDX20 (ENSMLEG00000005722) #19	KCND3 (ENSMLEG00000042640) #20	CTTNBP2NL (ENSMLEG00000017567) #21	WNT2B (ENSMLEG00000032741) #22	ST7L (ENSMLEG00000040496) #23	ENSMLEG00000034064	ENSMLEG00000035790	CAPZA1 (ENSMLEG00000035737) #24	MOV10 (ENSMLEG00000001940) #25	RHOC (ENSMLEG00000023164) #26	PPM1J (ENSMLEG00000043770) #27	TAFA3 (ENSMLEG00000035101) #28	SLC16A1 (ENSMLEG00000039579) ##29	LRIG2 (ENSMLEG00000041869)	ENSMLEG00000037440	MAGI3 (ENSMLEG00000032185)	PHTF1 (ENSMLEG00000036566)	RSBN1 (ENSMLEG00000044249)	PTPN22 (ENSMLEG00000035739)
Macaca	ANCESTRAL SPECIES		ENSGT00940000163351	ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a.g #13	ENSGT00390000015005 #14	ENSGT00950000182857.a.a.b.a.r.a.b.b.b.a	ENSGT00930000151073 #15	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00910000145979	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Pig-tailed macaque	MODERN SPECIES	556	CHI3L2 (ENSMNEG00000037931)	ENSMNEG00000029808 ##9	CHIA (ENSMNEG00000032841) #9	PIFO (ENSMNEG00000027237) #10	OVGP1 (ENSMNEG00000036501) #11	WDR77 (ENSMNEG00000030129) #12	ENSMNEG00000041454 #13	C1orf162 (ENSMNEG00000034601) #14	ENSMNEG00000005161	TMIGD3 (ENSMNEG00000038209) #15	RAP1A (ENSMNEG00000031184) #17	INKA2 (ENSMNEG00000040750) #18	DDX20 (ENSMNEG00000005757) #19	KCND3 (ENSMNEG00000035414) #20	CTTNBP2NL (ENSMNEG00000036126) #21	WNT2B (ENSMNEG00000037237) #22	ENSMNEG00000032002	ST7L (ENSMNEG00000041208) #23	CAPZA1 (ENSMNEG00000032031) #24	MOV10 (ENSMNEG00000040033) #25	RHOC (ENSMNEG00000036794) #26	PPM1J (ENSMNEG00000034093) #27	TAFA3 (ENSMNEG00000026429) #28	ENSMNEG00000036594	SLC16A1 (ENSMNEG00000041688) ##29	LRIG2 (ENSMNEG00000043055)	ENSMNEG00000029222	ENSMNEG00000035375	MAGI3 (ENSMNEG00000033832)	PHTF1 (ENSMNEG00000031836)	RSBN1 (ENSMNEG00000038008)
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a.g #13	ENSGT00390000015005 #14	ENSGT00950000182857.a.a.b.a.r.a.b.b.b.a	ENSGT00930000151073 #15	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.b.a	ENSGT00950000182852.B #21	ENSGT00390000018566.i.d	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00510000047030.xb.a.d	ENSGT01100000263539.b.a.b.b.b.b.b	ENSGT00940000154955.f ##29	ENSGT01100000263676.b.b.a.c.a	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958
Rhesus	MODERN SPECIES		CHI3L2 (ENSMMUG00000002455)	ENSMMUG00000002454 ##9	CHIA (ENSMMUG00000008857) #9	PIFO (ENSMMUG00000053581) #10	OVGP1 (ENSMMUG00000003309) #11	ATP5PB (ENSMMUG00000065322) #13	C1H1orf162 (ENSMMUG00000003579) #14	TMIGD3 (ENSMMUG00000003581) #15	RAP1A (ENSMMUG00000014486) #17	INKA2 (ENSMMUG00000052184) #18	DDX20 (ENSMMUG00000014489) #19	KCND3 (ENSMMUG00000050825) #20	ENSMMUG00000057625	CTTNBP2NL (ENSMMUG00000018455) #21	ENSMMUG00000037458	WNT2B (ENSMMUG00000007765) #22	ST7L (ENSMMUG00000007766) #23	CAPZA1 (ENSMMUG00000015668) #24	MOV10 (ENSMMUG00000059489) #25	PPM1J (ENSMMUG00000007767) #27	TAFA3 (ENSMMUG00000058665) #28	ENSMMUG00000057278	SLC16A1 (ENSMMUG00000006171) ##29	ENSMMUG00000064630	LRIG2 (ENSMMUG00000019098)	MAGI3 (ENSMMUG00000017817)	PHTF1 (ENSMMUG00000017819)	RSBN1 (ENSMMUG00000017823)	PTPN22 (ENSMMUG00000006786)	BCL2L15 (ENSMMUG00000006787)	DCLRE1B (ENSMMUG00000019527)
Crab-eating macaque	MODERN SPECIES		CHIA (ENSMFAG00000003339) #9	PIFO (ENSMFAG00000038084) #10	OVGP1 (ENSMFAG00000034315) #11	WDR77 (ENSMFAG00000030055) #12	ATP5PB (ENSMFAG00000037534) #13	C1orf162 (ENSMFAG00000034319) #14	ENSMFAG00000011493	TMIGD3 (ENSMFAG00000002528) #15	RAP1A (ENSMFAG00000034202) #17	INKA2 (ENSMFAG00000038293) #18	DDX20 (ENSMFAG00000031755) #19	KCND3 (ENSMFAG00000002047) #20	ENSMFAG00000061193	CTTNBP2NL (ENSMFAG00000054875) #21	ENSMFAG00000007433	WNT2B (ENSMFAG00000002295) #22	ST7L (ENSMFAG00000037326) #23	CAPZA1 (ENSMFAG00000035179) #24	ENSMFAG00000001491 #26	MOV10 (ENSMFAG00000002283) #25	ENSMFAG00000064876 #28	ENSMFAG00000027212	ENSMFAG00000053511	ENSMFAG00000050047	SLC16A1 (ENSMFAG00000035894) ##29	ENSMFAG00000047894	ENSMFAG00000062348	ENSMFAG00000051444	ENSMFAG00000064265	LRIG2 (ENSMFAG00000000102)	MAGI3 (ENSMFAG00000040138)
Rhinopithecus	ANCESTRAL SPECIES	10	ENSGT00940000163351	ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a.c.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00510000047030.xb.a.d	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000153298.n.a.a.a.b	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00940000169252
Golden snub-nosed monkey	MODERN SPECIES	3344	ENSRROG00000044336 ##9	CHIA (ENSRROG00000029001) #9	PIFO (ENSRROG00000045188) #10	ENSRROG00000037346	OVGP1 (ENSRROG00000044113) #11	WDR77 (ENSRROG00000043838) #12	ENSRROG00000037065 #13	C1orf162 (ENSRROG00000027897) #14	TMIGD3 (ENSRROG00000024975) #15	RAP1A (ENSRROG00000043025) #17	INKA2 (ENSRROG00000024632) #18	DDX20 (ENSRROG00000030608) #19	KCND3 (ENSRROG00000034849) #20	ENSRROG00000009633	CTTNBP2NL (ENSRROG00000031464) #21	WNT2B (ENSRROG00000033069) #22	ST7L (ENSRROG00000036748) #23	CAPZA1 (ENSRROG00000038535) #24	MOV10 (ENSRROG00000041135) #25	RHOC (ENSRROG00000035409) #26	PPM1J (ENSRROG00000042626) #27	TAFA3 (ENSRROG00000044261) #28	ENSRROG00000042524	SLC16A1 (ENSRROG00000045095) ##29	LRIG2 (ENSRROG00000045450)	ENSRROG00000035234	ENSRROG00000026617
Black snub-nosed monkey	MODERN SPECIES	299	ENSRBIG00000035219 ##9	CHIA (ENSRBIG00000030484) #9	PIFO (ENSRBIG00000026378) #10	ENSRBIG00000028657	OVGP1 (ENSRBIG00000043088) #11	WDR77 (ENSRBIG00000033413) #12	ENSRBIG00000036835 #13	C1orf162 (ENSRBIG00000040804) #14	TMIGD3 (ENSRBIG00000027992) #15	RAP1A (ENSRBIG00000016227) #17	INKA2 (ENSRBIG00000020811) #18	DDX20 (ENSRBIG00000030629) #19	KCND3 (ENSRBIG00000027724) #20	ENSRBIG00000020563	CTTNBP2NL (ENSRBIG00000038104) #21	WNT2B (ENSRBIG00000027268) #22	ST7L (ENSRBIG00000042439) #23	CAPZA1 (ENSRBIG00000015622) #24	MOV10 (ENSRBIG00000040802) #25	RHOC (ENSRBIG00000040896) #26	PPM1J (ENSRBIG00000030076) #27	TAFA3 (ENSRBIG00000040034) #28	SLC16A1 (ENSRBIG00000029892) ##29	LRIG2 (ENSRBIG00000032197)	ENSRBIG00000033233	ENSRBIG00000032312	MAGI3 (ENSRBIG00000030469)	PHTF1 (ENSRBIG00000033612)	RSBN1 (ENSRBIG00000038594)	PTPN22 (ENSRBIG00000039476)	ENSRBIG00000028387
Platyrrhini	ANCESTRAL SPECIES		ENSGT00950000182931.A #8	ENSGT00940000163351	ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Cebidae	ANCESTRAL SPECIES	1	ENSGT00950000182931.A #8	ENSGT00940000163351	ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Cebidae_a	ANCESTRAL SPECIES	41	ENSGT00950000182931.A #8	ENSGT00940000163351	ENSGT00940000154557.c.b ##9	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.t.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251.g #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a.d.b #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.f ##29	ENSGT00390000008859.b.d.k.a.b	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Bolivian squirrel monkey	MODERN SPECIES	98	DENND2D (ENSSBOG00000002690) #8	CHI3L2 (ENSSBOG00000031446)	ENSSBOG00000035934 ##9	CHIA (ENSSBOG00000031858) #9	ENSSBOG00000034771	PIFO (ENSSBOG00000035544) #10	ENSSBOG00000022640 #12	ATP5PB (ENSSBOG00000018275) #13	C1orf162 (ENSSBOG00000035875) #14	TMIGD3 (ENSSBOG00000031608) #15	RAP1A (ENSSBOG00000019474) #17	INKA2 (ENSSBOG00000033642) #18	DDX20 (ENSSBOG00000024789) #19	KCND3 (ENSSBOG00000022440) #20	CTTNBP2NL (ENSSBOG00000030528) #21	WNT2B (ENSSBOG00000034163) #22	ST7L (ENSSBOG00000035753) #23	CAPZA1 (ENSSBOG00000029789) #24	ENSSBOG00000035311	MOV10 (ENSSBOG00000005229) #25	ENSSBOG00000028169 #26	PPM1J (ENSSBOG00000030653) #27	TAFA3 (ENSSBOG00000032256) #28	ENSSBOG00000011467	SLC16A1 (ENSSBOG00000032694) ##29	ENSSBOG00000025769	ENSSBOG00000005704	LRIG2 (ENSSBOG00000024574)	MAGI3 (ENSSBOG00000034381)	ENSSBOG00000009268	PHTF1 (ENSSBOG00000031692)
Capuchin	MODERN SPECIES	32	MTO1 (ENSCCAG00000020119)	ENSCCAG00000033087	SLC17A5 (ENSCCAG00000038020)	CD109 (ENSCCAG00000027471)	ENSCCAG00000013592	COL12A1 (ENSCCAG00000029086)	ENSCCAG00000024466	TMEM30A (ENSCCAG00000025332)	FILIP1 (ENSCCAG00000036105) ##21	RAP1A (ENSCCAG00000034175) #17	INKA2 (ENSCCAG00000035044) #18	DDX20 (ENSCCAG00000026759) #19	KCND3 (ENSCCAG00000036329) #20	ENSCCAG00000026900	CTTNBP2NL (ENSCCAG00000027542) #21	WNT2B (ENSCCAG00000030621) #22	ST7L (ENSCCAG00000031301) #23	CAPZA1 (ENSCCAG00000023499) #24	MOV10 (ENSCCAG00000034901) #25	RHOC (ENSCCAG00000010980) #26	PPM1J (ENSCCAG00000016743) #27	TAFA3 (ENSCCAG00000036845) #28	ENSCCAG00000025186	ENSCCAG00000020811	ENSCCAG00000030295	SLC16A1 (ENSCCAG00000035715) ##29	ENSCCAG00000029855	LRIG2 (ENSCCAG00000028440)	ENSCCAG00000037055	ENSCCAG00000016565	MAGI3 (ENSCCAG00000031367)
Marmoset	MODERN SPECIES	19	CHI3L2 (ENSCJAG00000013226)	ENSCJAG00000013268 ##9	CHIA (ENSCJAG00000013278) #9	PIFO (ENSCJAG00000013286) #10	OVGP1 (ENSCJAG00000013301) #11	WDR77 (ENSCJAG00000013344) #12	ATP5PB (ENSCJAG00000013353) #13	C1orf162 (ENSCJAG00000013381) #14	TMIGD3 (ENSCJAG00000013385) #15	ENSCJAG00000084304	RAP1A (ENSCJAG00000013392) #17	KCND3 (ENSCJAG00000013456) #20	DDX20 (ENSCJAG00000013428) #19	ENSCJAG00000083135	CTTNBP2NL (ENSCJAG00000058885) #21	WNT2B (ENSCJAG00000013473) #22	ST7L (ENSCJAG00000013490) #23	CAPZA1 (ENSCJAG00000013548) #24	MOV10 (ENSCJAG00000013592) #25	RHOC (ENSCJAG00000042030) #26	PPM1J (ENSCJAG00000013680) #27	ENSCJAG00000069199 #28	SLC16A1 (ENSCJAG00000039688) ##29	ENSCJAG00000071583	ENSCJAG00000072462	LRIG2 (ENSCJAG00000013709)	ENSCJAG00000045357	MAGI3 (ENSCJAG00000011928)	PHTF1 (ENSCJAG00000012018)	RSBN1 (ENSCJAG00000012063)	PTPN22 (ENSCJAG00000012107)
Mas night monkey	MODERN SPECIES	648																WNT2B (ENSANAG00000032630) #22	ST7L (ENSANAG00000021532) #23	CAPZA1 (ENSANAG00000032620) #24	ENSANAG00000025564	MOV10 (ENSANAG00000034430) #25	RHOC (ENSANAG00000020910) #26	PPM1J (ENSANAG00000026432) #27	TAFA3 (ENSANAG00000029759) #28	SLC16A1 (ENSANAG00000024305) ##29	ENSANAG00000021970	LRIG2 (ENSANAG00000023071)	MAGI3 (ENSANAG00000021344)	PHTF1 (ENSANAG00000038095)	RSBN1 (ENSANAG00000032046)	PTPN22 (ENSANAG00000019287)	BCL2L15 (ENSANAG00000024457)
Tarsier	MODERN SPECIES	3702																WNT2B (ENSTSYG00000033599) #22	ST7L (ENSTSYG00000006258) #23	CAPZA1 (ENSTSYG00000006259) ##24	MOV10 (ENSTSYG00000034936) #25	RHOC (ENSTSYG00000034077) #26	PPM1J (ENSTSYG00000027535) #27
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Eulipotyphla	ANCESTRAL SPECIES	559																ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24
Hedgehog	MODERN SPECIES	3080																WNT2B (ENSEEUG00000014174) #22	ST7L (ENSEEUG00000014235) #23	CAPZA1 (ENSEEUG00000014415) #24
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162989.c	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Suina	ANCESTRAL SPECIES	32	ENSGT00940000154557.c.a #9	ENSGT00390000001017.j #10	ENSGT00940000162989.c	ENSGT00390000001017.i #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Pig	MODERN SPECIES	12	CHIA (ENSSSCG00000023706) #9	ENSSSCG00000039977 #10	ENSSSCG00000057886 #10	PGB (ENSSSCG00000006792)	OVGP1 (ENSSSCG00000006791) #11	WDR77 (ENSSSCG00000006790) #12	ATP5PB (ENSSSCG00000037772) #13	ENSSSCG00000025485 #14	ADORA3 (ENSSSCG00000006788) #15	ENSSSCG00000033957	RAP1A (ENSSSCG00000006785) #17	INKA2 (ENSSSCG00000036030) #18	DDX20 (ENSSSCG00000006783) #19	KCND3 (ENSSSCG00000026680) #20	CTTNBP2NL (ENSSSCG00000006781) #21	WNT2B (ENSSSCG00000006780) #22	ST7L (ENSSSCG00000006779) #23	CAPZA1 (ENSSSCG00000006775) #24	MOV10 (ENSSSCG00000006776) #25	RHOC (ENSSSCG00000006777) #26	PPM1J (ENSSSCG00000006774) #27	TAFA3 (ENSSSCG00000054939) #28	ENSSSCG00000060579	ENSSSCG00000006771 #29	ENSSSCG00000006770	ENSSSCG00000063479 ##29	LRIG2 (ENSSSCG00000034581)	MAGI3 (ENSSSCG00000006767)	PHTF1 (ENSSSCG00000006766)	RSBN1 (ENSSSCG00000030154)	PTPN22 (ENSSSCG00000006764)
Chacoan peccary	MODERN SPECIES	215	CHIA (ENSCWAG00000000901) #9	ENSCWAG00000000866 #10	ENSCWAG00000000477	ENSCWAG00000000390 #10	ENSCWAG00000000302	OVGP1 (ENSCWAG00000000271) #11	WDR77 (ENSCWAG00000000242) #12	ENSCWAG00000000188 #13	ENSCWAG00000000148 #14	TMIGD3 (ENSCWAG00000000106) #15	RAP1A (ENSCWAG00000000076) #17	INKA2 (ENSCWAG00000004463) #18	DDX20 (ENSCWAG00000004423) #19	KCND3 (ENSCWAG00000004329) #20	CTTNBP2NL (ENSCWAG00000004286) #21	WNT2B (ENSCWAG00000004240) #22	ST7L (ENSCWAG00000004057) #23	ENSCWAG00000003990 #24	MOV10 (ENSCWAG00000003921) #25	RHOC (ENSCWAG00000003888) #26	PPM1J (ENSCWAG00000003807) #27	TAFA3 (ENSCWAG00000003777) #28	ENSCWAG00000003745 #29	ENSCWAG00000003720 ##29	LRIG2 (ENSCWAG00000003699)	MAGI3 (ENSCWAG00000003669)	PHTF1 (ENSCWAG00000003629)	RSBN1 (ENSCWAG00000003607)	PTPN22 (ENSCWAG00000003032)	BCL2L15 (ENSCWAG00000002937)	AP4B1 (ENSCWAG00000002910)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162989.c	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00390000001017.l #10	ENSGT00940000162989.c	ENSGT00390000001017.k #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Cetacea	ANCESTRAL SPECIES		ENSGT00940000165936	ENSGT00940000154557.c.a #9	ENSGT00390000001017.l #10	ENSGT00940000162989.c	ENSGT00390000001017.k #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a.h #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000165936	ENSGT00940000154557.c.a #9	ENSGT00390000001017.l #10	ENSGT00940000162989.c	ENSGT00390000001017.k #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a.h #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000165936	ENSGT00940000154557.c.a #9	ENSGT00390000001017.l #10	ENSGT00940000162989.c	ENSGT00390000001017.k #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a.h #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000165936	ENSGT00940000154557.c.a #9	ENSGT00390000001017.l #10	ENSGT00940000162989.c	ENSGT00390000001017.k #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a.h #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00960000186913.c	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096
Monodontidae	ANCESTRAL SPECIES		ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00940000165936	ENSGT00940000154557.c.a #9	ENSGT00390000001017.l #10	ENSGT00390000010711.g #12	ENSGT00390000001958.n.a.h #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00960000186913.c	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096
Narwhal	MODERN SPECIES	304	DRAM2 (ENSMMNG00015018445)	CEPT1 (ENSMMNG00015018402) #7	DENND2D (ENSMMNG00015018341) #8	ENSMMNG00015017870	CHIA (ENSMMNG00015017712) #9	PIFO (ENSMMNG00015017677) #10	WDR77 (ENSMMNG00015017655) #12	ATP5PB (ENSMMNG00015017619) #13	C1orf162 (ENSMMNG00015017580) #14	TMIGD3 (ENSMMNG00015017537) #15	RAP1A (ENSMMNG00015017506) #17	INKA2 (ENSMMNG00015017485) #18	DDX20 (ENSMMNG00015017446) #19	KCND3 (ENSMMNG00015017380) #20	CTTNBP2NL (ENSMMNG00015017327) #21	WNT2B (ENSMMNG00015017278) #22	ST7L (ENSMMNG00015016977) #23	CAPZA1 (ENSMMNG00015016891) #24	MOV10 (ENSMMNG00015016785) #25	RHOC (ENSMMNG00015016738) #26	PPM1J (ENSMMNG00015016659) #27	TAFA3 (ENSMMNG00015016628) #28	ENSMMNG00015016605 #29	ENSMMNG00015016573	ENSMMNG00015016557 ##29	LRIG2 (ENSMMNG00015016485)	ENSMMNG00015016455	ENSMMNG00015016435	MAGI3 (ENSMMNG00015016371)	PHTF1 (ENSMMNG00015016285)	RSBN1 (ENSMMNG00015016184)
Beluga whale	MODERN SPECIES	74	ENSDLEG00000014689	CHIA (ENSDLEG00000014820) #9	ENSDLEG00000014836 #10	ENSDLEG00000014857 #10	ENSDLEG00000014888 #12	OVGP1 (ENSDLEG00000014907) #11	ENSDLEG00000014938 #12	ENSDLEG00000014947 #13	ADORA3 (ENSDLEG00000014971) #16	RAP1A (ENSDLEG00000014980) #17	FAM212B (ENSDLEG00000015000) #18	DDX20 (ENSDLEG00000015010) #19	KCND3 (ENSDLEG00000015024) #20	ST7L (ENSDLEG00000015036) #23	CTTNBP2NL (ENSDLEG00000015110) #21	WNT2B (ENSDLEG00000015121) #22	CAPZA1 (ENSDLEG00000015133) #24	MOV10 (ENSDLEG00000015148) #25	RHOC (ENSDLEG00000015225) #26	PPM1J (ENSDLEG00000015240) #27	FAM19A3 (ENSDLEG00000015257) #28	SLC16A1 (ENSDLEG00000015270) ##29	ENSDLEG00000015303	LRIG2 (ENSDLEG00000015322)	ENSDLEG00000015425	MAGI3 (ENSDLEG00000015437)	ENSDLEG00000015463	PHTF1 (ENSDLEG00000015505)	RSBN1 (ENSDLEG00000015513)	ENSDLEG00000015519	ENSDLEG00000015527
Vaquita	MODERN SPECIES		ENSPSNG00000017411	CHIA (ENSPSNG00000017767) #9	ENSPSNG00000017976 #10	ENSPSNG00000018040	ENSPSNG00000018100 #10	OVGP1 (ENSPSNG00000018211) #11	WDR77 (ENSPSNG00000018333) #12	ENSPSNG00000018380 #13	C1orf162 (ENSPSNG00000000039) #14	TMIGD3 (ENSPSNG00000000054) #15	RAP1A (ENSPSNG00000000077) #17	INKA2 (ENSPSNG00000000085) #18	DDX20 (ENSPSNG00000000108) #19	KCND3 (ENSPSNG00000000230) #20	CTTNBP2NL (ENSPSNG00000000291) #21	WNT2B (ENSPSNG00000000322) #22	ST7L (ENSPSNG00000000464) #23	CAPZA1 (ENSPSNG00000000594) #24	MOV10 (ENSPSNG00000000620) #25	RHOC (ENSPSNG00000000662) #26	PPM1J (ENSPSNG00000000696) #27	TAFA3 (ENSPSNG00000000757) #28	SLC16A1 (ENSPSNG00000000795) ##29	LRIG2 (ENSPSNG00000000869)	ENSPSNG00000000959	MAGI3 (ENSPSNG00000000989)	ENSPSNG00000001046	PHTF1 (ENSPSNG00000001106)	RSBN1 (ENSPSNG00000001187)	PTPN22 (ENSPSNG00000001432)	BCL2L15 (ENSPSNG00000001733)
Dolphin	MODERN SPECIES	751															ENSTTRG00000009949 #21	WNT2B (ENSTTRG00000009957) #22	ST7L (ENSTTRG00000009963) #23	CAPZA1 (ENSTTRG00000009976) #24	MOV10 (ENSTTRG00000009983) #25	RHOC (ENSTTRG00000010008) #26	ENSTTRG00000010013 #27
Sperm whale	MODERN SPECIES	15	CHI3L2 (ENSPCTG00005003089)	ENSPCTG00005002849	CHIA (ENSPCTG00005002774) #9	ENSPCTG00005002752 #10	ENSPCTG00005002743 #10	OVGP1 (ENSPCTG00005002695) #11	WDR77 (ENSPCTG00005002656) #12	ATP5PB (ENSPCTG00005002629) #13	C1orf162 (ENSPCTG00005002605) #14	ENSPCTG00005002585 #15	ENSPCTG00005002576 #18	RAP1A (ENSPCTG00005002547) #17	ENSPCTG00005002528	KCND3 (ENSPCTG00005002492) #20	CTTNBP2NL (ENSPCTG00005002466) #21	WNT2B (ENSPCTG00005002451) #22	ST7L (ENSPCTG00005002219) #23	CAPZA1 (ENSPCTG00005002149) #24	MOV10 (ENSPCTG00005002086) #25	RHOC (ENSPCTG00005002061) #26	PPM1J (ENSPCTG00005002033) #27	TAFA3 (ENSPCTG00005002012) #28	ENSPCTG00005002004	ENSPCTG00005001991	SLC16A1 (ENSPCTG00005001963) ##29	LRIG2 (ENSPCTG00005001890)	MAGI3 (ENSPCTG00005001838)	PHTF1 (ENSPCTG00005001771)	RSBN1 (ENSPCTG00005001718)	PTPN22 (ENSPCTG00005001654)	BCL2L15 (ENSPCTG00005001602)
Blue whale	MODERN SPECIES		CHIA (ENSBMSG00010008641) #9	ENSBMSG00010008660 #10	ENSBMSG00010008672	ENSBMSG00010008693	ENSBMSG00010008706 #10	OVGP1 (ENSBMSG00010008731) #11	WDR77 (ENSBMSG00010008752) #12	ENSBMSG00010008767 #13	C1orf162 (ENSBMSG00010008781) #14	TMIGD3 (ENSBMSG00010008799) #15	ENSBMSG00010008815	INKA2 (ENSBMSG00010008828) #18	DDX20 (ENSBMSG00010008840) #19	KCND3 (ENSBMSG00010008877) #20	CTTNBP2NL (ENSBMSG00010008911) #21	WNT2B (ENSBMSG00010008924) #22	ST7L (ENSBMSG00010008960) #23	ENSBMSG00010009003 #24	MOV10 (ENSBMSG00010009012) #25	RHOC (ENSBMSG00010009025) #26	PPM1J (ENSBMSG00010009046) #27	TAFA3 (ENSBMSG00010009066) #28	SLC16A1 (ENSBMSG00010009080) ##29	LRIG2 (ENSBMSG00010009101)	ENSBMSG00010009111	ENSBMSG00010009119	ENSBMSG00010009123	MAGI3 (ENSBMSG00010009134)	PHTF1 (ENSBMSG00010009188)	ENSBMSG00010009419	PTPN22 (ENSBMSG00010009461)
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000162989.c	ENSGT00940000162223.b #11	ENSGT00390000001017.k #10	ENSGT00940000163644	ENSGT00940000162223.a #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Yarkand deer	MODERN SPECIES	12	ENSCHYG00000008629	ENSCHYG00000008426 #11	ENSCHYG00000008388 #10	ENSCHYG00000008237	ENSCHYG00000008093 #11	WDR77 (ENSCHYG00000008032) #12	ENSCHYG00000007985 #13	C1orf162 (ENSCHYG00000007944) #14	TMIGD3 (ENSCHYG00000007896) #15	RAP1A (ENSCHYG00000007851) #17	INKA2 (ENSCHYG00000007838) #18	DDX20 (ENSCHYG00000007715) #19	KCND3 (ENSCHYG00000007683) #20	ENSCHYG00000007673	CTTNBP2NL (ENSCHYG00000007594) #21	WNT2B (ENSCHYG00000007553) #22	ST7L (ENSCHYG00000007457) #23	CAPZA1 (ENSCHYG00000007396) #24	ENSCHYG00000007380	MOV10 (ENSCHYG00000007244) #25	ENSCHYG00000007204 #26	PPM1J (ENSCHYG00000007120) #27	ENSCHYG00000021662 #28	ENSCHYG00000021598	SLC16A1 (ENSCHYG00000021485) ##29	LRIG2 (ENSCHYG00000021183)	MAGI3 (ENSCHYG00000020532)	PHTF1 (ENSCHYG00000020034)	RSBN1 (ENSCHYG00000019892)	PTPN22 (ENSCHYG00000019743)	BCL2L15 (ENSCHYG00000019696)
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000162989.c	ENSGT00940000162223.b #11	ENSGT00390000001017.k #10	ENSGT00940000163644	ENSGT00940000162223.a #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000181698	ENSGT00940000162223.b #11	ENSGT00390000001017.k #10	ENSGT00940000163644	ENSGT00940000162223.a #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000162989.c	ENSGT00940000181698	ENSGT00940000162223.a.b #11	ENSGT00390000001017.k #10	ENSGT00940000162223.a.a #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000008767.a.a.a.b.f.k.b	ENSGT00390000018096	ENSGT00940000157025
Goat	MODERN SPECIES	22	ENSCHIG00000022367	OVN (ENSCHIG00000016636) #11	ENSCHIG00000018096	WDR77 (ENSCHIG00000023007) #12	ATP5PB (ENSCHIG00000012236) #13	C1orf162 (ENSCHIG00000025730) #14	TMIGD3 (ENSCHIG00000010825) #15	ADORA3 (ENSCHIG00000008671) #16	RAP1A (ENSCHIG00000017703) #17	INKA2 (ENSCHIG00000025570) #18	DDX20 (ENSCHIG00000011219) #19	KCND3 (ENSCHIG00000019455) #20	CTTNBP2NL (ENSCHIG00000018320) #21	ENSCHIG00000011859	ST7L (ENSCHIG00000025568) #23	WNT2B (ENSCHIG00000009091) #22	CAPZA1 (ENSCHIG00000023138) #24	MOV10 (ENSCHIG00000022479) #25	RHOC (ENSCHIG00000024084) #26	PPM1J (ENSCHIG00000013435) #27	ENSCHIG00000018209 #29	ENSCHIG00000016601 ##29	LRIG2 (ENSCHIG00000021380)	MAGI3 (ENSCHIG00000013616)	PHTF1 (ENSCHIG00000016393)	RSBN1 (ENSCHIG00000015190)	PTPN22 (ENSCHIG00000014330)	ENSCHIG00000006454	BCL2L15 (ENSCHIG00000012371)	AP4B1 (ENSCHIG00000022344)	DCLRE1B (ENSCHIG00000023732)
Rambouillet Sheep	MODERN SPECIES		ENSOARG00020010749 #10	ENSOARG00020011028	ENSOARG00020011625 #11	ENSOARG00020011762 #10	ENSOARG00020011829 #10	OVGP1 (ENSOARG00020011897) #11	WDR77 (ENSOARG00020012024) #12	ENSOARG00020012190 #13	C1orf162 (ENSOARG00020012347) #14	RAP1A (ENSOARG00020012648) #17	INKA2 (ENSOARG00020012728) #18	DDX20 (ENSOARG00020012777) #19	KCND3 (ENSOARG00020012910) #20	CTTNBP2NL (ENSOARG00020013081) #21	ST7L (ENSOARG00020013173) #23	WNT2B (ENSOARG00020013948) #22	ENSOARG00020014006 #24	MOV10 (ENSOARG00020014075) #25	RHOC (ENSOARG00020014447) #26	PPM1J (ENSOARG00020014499) #27	TAFA3 (ENSOARG00020014692) #28	SLC16A1 (ENSOARG00020014766) ##29	LRIG2 (ENSOARG00020014858)	ENSOARG00020015101 #29	MAGI3 (ENSOARG00020015385)	PHTF1 (ENSOARG00020015861)	RSBN1 (ENSOARG00020016188)	ENSOARG00020019995	BCL2L15 (ENSOARG00020020041)	AP4B1 (ENSOARG00020020107)	DCLRE1B (ENSOARG00020020246)
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000162989.c	ENSGT00940000181698	ENSGT00940000162223.b #11	ENSGT00390000001017.k #10	ENSGT00940000163644	ENSGT00940000162223.a #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00960000191271	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00390000006922.m.b.a.d	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958
Bos	ANCESTRAL SPECIES		ENSGT00940000162989.c	ENSGT00940000181698	ENSGT00940000162223.b #11	ENSGT00390000001017.k #10	ENSGT00940000163644	ENSGT00940000162223.a #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965.d #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00960000191271	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00390000006922.m.b.a.d	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000162989.c	ENSGT00940000181698	ENSGT00940000162223.b #11	ENSGT00390000001017.k #10	ENSGT00940000163644	ENSGT00940000162223.a #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965.d #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00960000191271	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00390000006922.m.b.a.d	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005015938 #10	ENSBIXG00005002542	ENSBIXG00005016026	ENSBIXG00005016051 #10	OVGP1 (ENSBIXG00005016174) #11	ENSBIXG00005016292 #13	C1orf162 (ENSBIXG00005016331) #14	TMIGD3 (ENSBIXG00005016366) #15	RAP1A (ENSBIXG00005016406) #17	ENSBIXG00005005506	INKA2 (ENSBIXG00005016422) #18	DDX20 (ENSBIXG00005006446) #19	KCND3 (ENSBIXG00005016552) #20	ENSBIXG00005016579	CTTNBP2NL (ENSBIXG00005016617) #21	WNT2B (ENSBIXG00005016642) #22	ENSBIXG00005016666	ST7L (ENSBIXG00005017004) #23	CAPZA1 (ENSBIXG00005017096) #24	MOV10 (ENSBIXG00005006582) #25	RHOC (ENSBIXG00005017234) #26	PPM1J (ENSBIXG00005017328) #27	TAFA3 (ENSBIXG00005017363) #28	ENSBIXG00005017390	SLC16A1 (ENSBIXG00005007332) ##29	LRIG2 (ENSBIXG00005017655)	ENSBIXG00005017729	MAGI3 (ENSBIXG00005006759)	PHTF1 (ENSBIXG00005017948)	RSBN1 (ENSBIXG00005002921)	PTPN22 (ENSBIXG00005018325)
Cow	MODERN SPECIES	22	ENSBTAG00000023535	ENSBTAG00000053654	ENSBTAG00000024849 #11	ENSBTAG00000002489 #10	ENSBTAG00000034841	OVGP1 (ENSBTAG00000005973) #11	WDR77 (ENSBTAG00000014102) #12	ATP5PB (ENSBTAG00000006441) #13	C3H1orf162 (ENSBTAG00000052822) #14	TMIGD3 (ENSBTAG00000039738) #15	RAP1A (ENSBTAG00000050904) #17	INKA2 (ENSBTAG00000022580) #18	DDX20 (ENSBTAG00000018717) #19	KCND3 (ENSBTAG00000031654) #20	CTTNBP2NL (ENSBTAG00000021602) #21	WNT2B (ENSBTAG00000014291) #22	ST7L (ENSBTAG00000014294) #23	CAPZA1 (ENSBTAG00000014295) #24	MOV10 (ENSBTAG00000014297) #25	RHOC (ENSBTAG00000014299) #26	PPM1J (ENSBTAG00000006081) #27	TAFA3 (ENSBTAG00000052841) #28	ENSBTAG00000049434 #29	ENSBTAG00000055008	SLC16A1 (ENSBTAG00000015107) ##29	LRIG2 (ENSBTAG00000008525)	ENSBTAG00000027172	MAGI3 (ENSBTAG00000019611)	PHTF1 (ENSBTAG00000019615)	RSBN1 (ENSBTAG00000031940)	PTPN22 (ENSBTAG00000019617)
Bos_a	ANCESTRAL SPECIES	32	ENSGT00390000001017.l #10	ENSGT00940000162989.c	ENSGT00940000181698	ENSGT00940000162223.b #11	ENSGT00390000001017.k #10	ENSGT00940000162223.a #11	ENSGT00390000010711 #12	ENSGT00390000001958.n.a #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965.d #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00390000006922.m.b.a.d	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018741.i.a	ENSGT00390000018096
Wild yak	MODERN SPECIES	52														CTTNBP2NL (ENSBMUG00000001950) #21	ST7L (ENSBMUG00000002092) #23	WNT2B (ENSBMUG00000002152) #22	CAPZA1 (ENSBMUG00000002236) #24	MOV10 (ENSBMUG00000002294) #25	RHOC (ENSBMUG00000002344) #26	PPM1J (ENSBMUG00000002406) #27	TAFA3 (ENSBMUG00000002427) #28	SLC16A1 (ENSBMUG00000002463) ##29	LRIG2 (ENSBMUG00000002511)	ENSBMUG00000002547	MAGI3 (ENSBMUG00000002625)	PHTF1 (ENSBMUG00000002732)	RSBN1 (ENSBMUG00000002763)	PTPN22 (ENSBMUG00000002884)	BCL2L15 (ENSBMUG00000002963)	ENSBMUG00000002972	AP4B1 (ENSBMUG00000003008)
Domestic yak	MODERN SPECIES	22	ENSBGRG00000003424 ##9	ENSBGRG00000003449 #10	ENSBGRG00000003517	OVGP1 (ENSBGRG00000003565) #11	ENSBGRG00000003845 #10	WDR77 (ENSBGRG00000003894) #12	ATP5PB (ENSBGRG00000003935) #13	ENSBGRG00000004068 #14	TMIGD3 (ENSBGRG00000004138) #15	RAP1A (ENSBGRG00000004345) #17	INKA2 (ENSBGRG00000004403) #18	DDX20 (ENSBGRG00000004420) #19	KCND3 (ENSBGRG00000004468) #20	CTTNBP2NL (ENSBGRG00000004551) #21	ST7L (ENSBGRG00000004608) #23	WNT2B (ENSBGRG00000005038) #22	ENSBGRG00000005079	CAPZA1 (ENSBGRG00000005101) #24	MOV10 (ENSBGRG00000005173) #25	RHOC (ENSBGRG00000005321) #26	ENSBGRG00000004287 #27	ENSBGRG00000004388 #27	TAFA3 (ENSBGRG00000004407) #28	SLC16A1 (ENSBGRG00000004446) ##29	LRIG2 (ENSBGRG00000004542)	ENSBGRG00000004572	MAGI3 (ENSBGRG00000004622)	PHTF1 (ENSBGRG00000004890)	RSBN1 (ENSBGRG00000005063)	PTPN22 (ENSBGRG00000005181)	ENSBGRG00000005668
American bison	MODERN SPECIES	3366	ENSBBBG00000009796 #10	ENSBBBG00000009818	ENSBBBG00000009825	ENSBBBG00000009858 #11	ENSBBBG00000001651 #10	ENSBBBG00000009924 #11	WDR77 (ENSBBBG00000009940) #12	ENSBBBG00000009954 #13	C1orf162 (ENSBBBG00000009963) #14	TMIGD3 (ENSBBBG00000009970) #15	RAP1A (ENSBBBG00000009983) #17	INKA2 (ENSBBBG00000009986) #18	DDX20 (ENSBBBG00000001696) #19	KCND3 (ENSBBBG00000010024) #20	CTTNBP2NL (ENSBBBG00000010047) #21	WNT2B (ENSBBBG00000010055) #22	ST7L (ENSBBBG00000010148) #23	CAPZA1 (ENSBBBG00000001721) #24	MOV10 (ENSBBBG00000010240) #25	ENSBBBG00000000132 #26	PPM1J (ENSBBBG00000000080) #27	TAFA3 (ENSBBBG00000000053) #28	ENSBBBG00000010297 #29	ENSBBBG00000007392	ENSBBBG00000010320 ##29	LRIG2 (ENSBBBG00000001792)	ENSBBBG00000010355	MAGI3 (ENSBBBG00000010439)	PHTF1 (ENSBBBG00000010604)	RSBN1 (ENSBBBG00000010658)	PTPN22 (ENSBBBG00000010840)
Siberian musk deer	MODERN SPECIES	98	ENSMMSG00000008385 #11	ENSMMSG00000008505 #10	ENSMMSG00000008563 #11	WDR77 (ENSMMSG00000008635) #12	ENSMMSG00000008717 #13	C1orf162 (ENSMMSG00000008788) #14	TMIGD3 (ENSMMSG00000008818) #15	ENSMMSG00000008856	RAP1A (ENSMMSG00000008888) #17	INKA2 (ENSMMSG00000008934) #18	DDX20 (ENSMMSG00000008956) #19	KCND3 (ENSMMSG00000009020) #20	ENSMMSG00000009132	CTTNBP2NL (ENSMMSG00000009143) #21	ENSMMSG00000009168	WNT2B (ENSMMSG00000009189) #22	ST7L (ENSMMSG00000009251) #23	CAPZA1 (ENSMMSG00000009368) #24	MOV10 (ENSMMSG00000009432) #25	RHOC (ENSMMSG00000009557) #26	PPM1J (ENSMMSG00000009611) #27	TAFA3 (ENSMMSG00000009742) #28	ENSMMSG00000009760 #29	ENSMMSG00000009792	ENSMMSG00000009820	ENSMMSG00000009834 ##29	LRIG2 (ENSMMSG00000009918)	MAGI3 (ENSMMSG00000010012)	PHTF1 (ENSMMSG00000010111)	ENSMMSG00000010306	RSBN1 (ENSMMSG00000010323)
Camelidae	ANCESTRAL SPECIES	29	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.o #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Arabian camel	MODERN SPECIES	35	DENND2D (ENSCDRG00005001214) #8	CHIA (ENSCDRG00005001168) #9	PIFO (ENSCDRG00005001125) #10	ENSCDRG00005001051 #11	WDR77 (ENSCDRG00005001004) #12	ENSCDRG00005000969 #13	C1orf162 (ENSCDRG00005000936) #14	TMIGD3 (ENSCDRG00005000901) #15	ENSCDRG00005000857	RAP1A (ENSCDRG00005000845) #17	INKA2 (ENSCDRG00005000834) #18	DDX20 (ENSCDRG00005000809) #19	KCND3 (ENSCDRG00005000784) #20	CTTNBP2NL (ENSCDRG00005000760) #21	ENSCDRG00005000751	WNT2B (ENSCDRG00005000739) #22	ST7L (ENSCDRG00005000571) #23	CAPZA1 (ENSCDRG00005000502) #24	MOV10 (ENSCDRG00005000430) #25	RHOC (ENSCDRG00005000382) #26	PPM1J (ENSCDRG00005000330) #27	TAFA3 (ENSCDRG00005000289) #28	ENSCDRG00005000249 #29	ENSCDRG00005000217 ##29	LRIG2 (ENSCDRG00005000125)	MAGI3 (ENSCDRG00005006117)	PHTF1 (ENSCDRG00005006008)	RSBN1 (ENSCDRG00005005951)	PTPN22 (ENSCDRG00005005810)	ENSCDRG00005005752	AP4B1 (ENSCDRG00005005713)
Alpaca	MODERN SPECIES	853															CTTNBP2NL (ENSVPAG00000005354) #21	WNT2B (ENSVPAG00000005356) #22	ST7L (ENSVPAG00000005358) #23	CAPZA1 (ENSVPAG00000005361) #24
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000154557.c.b ##9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000165936	ENSGT00940000154557.c.b ##9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Chiroptera	ANCESTRAL SPECIES	38	ENSGT00940000165936	ENSGT00940000154557.c.b ##9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Megabat	MODERN SPECIES	629																WNT2B (ENSPVAG00000002472) #22	ST7L (ENSPVAG00000002473) #23	CAPZA1 (ENSPVAG00000002475) #24	MOV10 (ENSPVAG00000002477) #25	RHOC (ENSPVAG00000002488) #26	PPM1J (ENSPVAG00000002493) #27	TAFA3 (ENSPVAG00000002496) #28
Microchiroptera	ANCESTRAL SPECIES	35	ENSGT00940000165936	ENSGT00940000154557.c.b ##9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Microbat	MODERN SPECIES	1038	DENND2D (ENSMLUG00000005114) #8	ENSMLUG00000009000 ##9	ENSMLUG00000010599 ##9	PIFO (ENSMLUG00000012396) #10	ENSMLUG00000012403	OVGP1 (ENSMLUG00000012407) #11	WDR77 (ENSMLUG00000012412) #12	ENSMLUG00000012417 #13	ENSMLUG00000012427 #15	ADORA3 (ENSMLUG00000027034) #16	RAP1A (ENSMLUG00000010571) #17	INKA2 (ENSMLUG00000009665) #18	DDX20 (ENSMLUG00000009676) #19	KCND3 (ENSMLUG00000009699) #20	CTTNBP2NL (ENSMLUG00000009737) #21	WNT2B (ENSMLUG00000009754) #22	ST7L (ENSMLUG00000009757) #23	CAPZA1 (ENSMLUG00000009796) #24	MOV10 (ENSMLUG00000009815) #25	RHOC (ENSMLUG00000025586) #26	PPM1J (ENSMLUG00000009847) #27	TAFA3 (ENSMLUG00000009867) #28	SLC16A1 (ENSMLUG00000005454) ##29	LRIG2 (ENSMLUG00000005456)	ENSMLUG00000002347	PHTF1 (ENSMLUG00000002367)	RSBN1 (ENSMLUG00000007416)	PTPN22 (ENSMLUG00000007430)	BCL2L15 (ENSMLUG00000007445)	ENSMLUG00000007458	DCLRE1B (ENSMLUG00000007477)
Greater horseshoe bat	MODERN SPECIES	14	ENSRFEG00010011002	ENSRFEG00010011181 ##9	ENSRFEG00010011574 ##9	PIFO (ENSRFEG00010011650) #10	ENSRFEG00010011822	WDR77 (ENSRFEG00010011876) #12	ENSRFEG00010012045 #13	C1orf162 (ENSRFEG00010012182) #14	TMIGD3 (ENSRFEG00010012229) #15	RAP1A (ENSRFEG00010012354) #17	INKA2 (ENSRFEG00010012415) #18	DDX20 (ENSRFEG00010012452) #19	KCND3 (ENSRFEG00010012538) #20	CTTNBP2NL (ENSRFEG00010012603) #21	ST7L (ENSRFEG00010012674) #23	WNT2B (ENSRFEG00010012963) #22	CAPZA1 (ENSRFEG00010013059) #24	MOV10 (ENSRFEG00010013132) #25	RHOC (ENSRFEG00010013211) #26	PPM1J (ENSRFEG00010013269) #27	TAFA3 (ENSRFEG00010013461) #28	ENSRFEG00010013514 ##29	LRIG2 (ENSRFEG00010013581)	ENSRFEG00010013698	MAGI3 (ENSRFEG00010013783)	PHTF1 (ENSRFEG00010013922)	RSBN1 (ENSRFEG00010014156)	PTPN22 (ENSRFEG00010014261)	BCL2L15 (ENSRFEG00010014468)	AP4B1 (ENSRFEG00010014570)	DCLRE1B (ENSRFEG00010014716)
Equus	ANCESTRAL SPECIES	3	ENSGT00950000183117.a.b #7	ENSGT00950000182931.A #8	ENSGT00940000163351	ENSGT00390000001017 #10	ENSGT00940000162989.c	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00390000007084.d	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096
Donkey	MODERN SPECIES	7	DRAM2 (ENSEASG00005005403)	CEPT1 (ENSEASG00005005407) #7	DENND2D (ENSEASG00005005415) #8	CHI3L2 (ENSEASG00005005420)	PIFO (ENSEASG00005005425) #10	ENSEASG00005005431	WDR77 (ENSEASG00005005441) #12	ATP5PB (ENSEASG00005005443) #13	C1orf162 (ENSEASG00005031971) #14	TMIGD3 (ENSEASG00005005446) #15	RAP1A (ENSEASG00005005448) #17	INKA2 (ENSEASG00005029164) #18	DDX20 (ENSEASG00005005454) #19	KCND3 (ENSEASG00005005457) #20	CTTNBP2NL (ENSEASG00005005465) #21	WNT2B (ENSEASG00005005467) #22	ST7L (ENSEASG00005005471) #23	CAPZA1 (ENSEASG00005005479) #24	MOV10 (ENSEASG00005005486) #25	RHOC (ENSEASG00005005492) #26	PPM1J (ENSEASG00005005493) #27	TAFA3 (ENSEASG00005005497) #28	ENSEASG00005034504 #29	ENSEASG00005037410 ##29	LRIG2 (ENSEASG00005005502)	ENSEASG00005005507	MAGI3 (ENSEASG00005005514)	PHTF1 (ENSEASG00005005521)	RSBN1 (ENSEASG00005005523)	PTPN22 (ENSEASG00005005531)	BCL2L15 (ENSEASG00005029753)
Horse	MODERN SPECIES	26	DRAM2 (ENSECAG00000011242)	CEPT1 (ENSECAG00000009032) #7	DENND2D (ENSECAG00000002508) #8	CHI3L2 (ENSECAG00000023849)	PIFO (ENSECAG00000023736) #10	ENSECAG00000044272	WDR77 (ENSECAG00000018629) #12	ATP5PB (ENSECAG00000018599) #13	ENSECAG00000046756 #15	ADORA3 (ENSECAG00000033327) #16	ENSECAG00000016434 #17	INKA2 (ENSECAG00000002928) #18	DDX20 (ENSECAG00000013565) #19	KCND3 (ENSECAG00000011594) #20	CTTNBP2NL (ENSECAG00000010817) #21	WNT2B (ENSECAG00000004705) #22	ST7L (ENSECAG00000019081) #23	CAPZA1 (ENSECAG00000016995) #24	MOV10 (ENSECAG00000011530) #25	RHOC (ENSECAG00000044625) #26	PPM1J (ENSECAG00000007948) #27	TAFA3 (ENSECAG00000005328) #28	ENSECAG00000047726 #29	SLC16A1 (ENSECAG00000021627) ##29	LRIG2 (ENSECAG00000018698)	ENSECAG00000037106	MAGI3 (ENSECAG00000012982)	PHTF1 (ENSECAG00000008416)	RSBN1 (ENSECAG00000008072)	PTPN22 (ENSECAG00000024298)	ENSECAG00000048631
Carnivora	ANCESTRAL SPECIES	1	ENSGT00390000001017 #10	ENSGT00940000163644.g.b	ENSGT00940000163644.g.a	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000163644.g.b	ENSGT00940000163644.g.a	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.c #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00510000047760.k.a	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Cat	MODERN SPECIES	239	CHIA (ENSFCAG00000028709) #9	ENSFCAG00000039867 #10	PGB2 (ENSFCAG00000040956) #11	PGB1 (ENSFCAG00000046664)	WDR77 (ENSFCAG00000005651) #12	ATP5PB (ENSFCAG00000028321) #13	CC1H1orf162 (ENSFCAG00000044929) #14	ADORA3 (ENSFCAG00000029569) #16	RAP1A (ENSFCAG00000030756) #17	INKA2 (ENSFCAG00000040364) #18	DDX20 (ENSFCAG00000025736) #19	KCND3 (ENSFCAG00000002673) #20	ENSFCAG00000030032	ST7L (ENSFCAG00000013302) #23	CTTNBP2NL (ENSFCAG00000013300) #21	WNT2B (ENSFCAG00000036315) #22	CAPZA1 (ENSFCAG00000013303) #24	MOV10 (ENSFCAG00000013305) #25	PPM1J (ENSFCAG00000014429) #27	TAFA3 (ENSFCAG00000013307) #28	SLC16A1 (ENSFCAG00000004315) ##29	LRIG2 (ENSFCAG00000026331)	MAGI3 (ENSFCAG00000009236)	PHTF1 (ENSFCAG00000028605)	RSBN1 (ENSFCAG00000027733)	PTPN22 (ENSFCAG00000009238)	BCL2L15 (ENSFCAG00000009239)	AP4B1 (ENSFCAG00000009240)	DCLRE1B (ENSFCAG00000040507)	HIPK1 (ENSFCAG00000009242)	OLFML3 (ENSFCAG00000009243)
Panthera	ANCESTRAL SPECIES	4	ENSGT00940000163644.g.b	ENSGT00940000163644.g.a	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.c #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00510000047760.k.a	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00390000001017 #10	ENSGT00940000163644.g.b	ENSGT00940000163644.g.a	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.c #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00510000047760.k.a	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
leopard	MODERN SPECIES	31	CHIA (ENSPPRG00000005241) #9	PIFO (ENSPPRG00000004236) #10	ENSPPRG00000003526	ENSPPRG00000003335	OVGP1 (ENSPPRG00000002990) #11	WDR77 (ENSPPRG00000002294) #12	ENSPPRG00000001921 #13	ENSPPRG00000001496 #15	ADORA3 (ENSPPRG00000001196) #16	RAP1A (ENSPPRG00000000474) #17	INKA2 (ENSPPRG00000000290) #18	DDX20 (ENSPPRG00000022979) #19	KCND3 (ENSPPRG00000023105) #20	ENSPPRG00000018976	CTTNBP2NL (ENSPPRG00000016873) #21	WNT2B (ENSPPRG00000016238) #22	ST7L (ENSPPRG00000014650) #23	CAPZA1 (ENSPPRG00000009375) #24	MOV10 (ENSPPRG00000007950) #25	RHOC (ENSPPRG00000003991) #26	PPM1J (ENSPPRG00000002873) #27	TAFA3 (ENSPPRG00000002023) #28	ENSPPRG00000001627 #29	ENSPPRG00000000446 ##29	LRIG2 (ENSPPRG00000000185)	MAGI3 (ENSPPRG00000023059)	PHTF1 (ENSPPRG00000013575)	RSBN1 (ENSPPRG00000008959)	ENSPPRG00000006556	BCL2L15 (ENSPPRG00000005485)	AP4B1 (ENSPPRG00000005145)
lion	MODERN SPECIES	8	CEPT1 (ENSPLOG00000005105) #7	DENND2D (ENSPLOG00000005053) #8	CHIA (ENSPLOG00000004941) #9	ENSPLOG00000004922	OVGP1 (ENSPLOG00000004911) #11	WDR77 (ENSPLOG00000004899) #12	ATP5PB (ENSPLOG00000004879) #13	ENSPLOG00000004854 #14	ADORA3 (ENSPLOG00000004840) #16	RAP1A (ENSPLOG00000004823) #17	INKA2 (ENSPLOG00000004808) #18	DDX20 (ENSPLOG00000020749) #19	KCND3 (ENSPLOG00000020694) #20	ENSPLOG00000020663	CTTNBP2NL (ENSPLOG00000020641) #21	WNT2B (ENSPLOG00000020600) #22	ST7L (ENSPLOG00000020474) #23	ENSPLOG00000020394 #24	MOV10 (ENSPLOG00000020222) #25	RHOC (ENSPLOG00000020186) #26	PPM1J (ENSPLOG00000020096) #27	TAFA3 (ENSPLOG00000020057) #28	ENSPLOG00000020035 #29	ENSPLOG00000020002 ##29	LRIG2 (ENSPLOG00000019954)	MAGI3 (ENSPLOG00000019634)	PHTF1 (ENSPLOG00000019325)	RSBN1 (ENSPLOG00000019230)	PTPN22 (ENSPLOG00000018355)	BCL2L15 (ENSPLOG00000018045)	AP4B1 (ENSPLOG00000017914)
Tiger	MODERN SPECIES	81	ENSPTIG00000010240	PIFO (ENSPTIG00000008395) #10	ENSPTIG00000007525	OVGP1 (ENSPTIG00000005531) #11	WDR77 (ENSPTIG00000003575) #12	ATP5PB (ENSPTIG00000022106) #13	C1orf162 (ENSPTIG00000022095) #14	ADORA3 (ENSPTIG00000022080) #16	ENSPTIG00000022060 #15	RAP1A (ENSPTIG00000022040) #17	INKA2 (ENSPTIG00000022035) #18	ENSPTIG00000021955 #19	ENSPTIG00000021906	KCND3 (ENSPTIG00000021413) #20	CTTNBP2NL (ENSPTIG00000021251) #21	WNT2B (ENSPTIG00000019917) #22	ST7L (ENSPTIG00000005238) #23	CAPZA1 (ENSPTIG00000003403) #24	MOV10 (ENSPTIG00000016249) #25	RHOC (ENSPTIG00000014819) #26	PPM1J (ENSPTIG00000013710) #27	TAFA3 (ENSPTIG00000013385) #28	ENSPTIG00000010945 #29	ENSPTIG00000009769 ##29	LRIG2 (ENSPTIG00000009001)	MAGI3 (ENSPTIG00000021471)	PHTF1 (ENSPTIG00000013775)	RSBN1 (ENSPTIG00000012973)	ENSPTIG00000011661	BCL2L15 (ENSPTIG00000010775)	AP4B1 (ENSPTIG00000008022)
Caniformia	ANCESTRAL SPECIES	2	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644.g.b	ENSGT00940000163644.g.a	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Canidae	ANCESTRAL SPECIES	18	ENSGT00940000154557.c.a #9	ENSGT00390000001017.g #10	ENSGT00940000163644.g.b	ENSGT00390000001017.h #10	ENSGT00940000163644.g.a	ENSGT00940000162223 #11	ENSGT00390000010711.i #12	ENSGT00390000001958.e #13	ENSGT00390000015005 #14	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b.a #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00940000163248.l	ENSGT00940000164092	ENSGT00940000163248.k	ENSGT00940000164168	ENSGT00440000039991
Red fox	MODERN SPECIES	180							ENSVVUG00000016305	ENSVVUG00000016287 #10	OVGP1 (ENSVVUG00000016278) #11	ADORA3 (ENSVVUG00000016258) #16	RAP1A (ENSVVUG00000016250) #17	INKA2 (ENSVVUG00000016243) #18	DDX20 (ENSVVUG00000016236) #19	KCND3 (ENSVVUG00000016230) #20	CTTNBP2NL (ENSVVUG00000016219) #21	WNT2B (ENSVVUG00000016215) #22	ST7L (ENSVVUG00000016179) #23	CAPZA1 (ENSVVUG00000016105) #24	MOV10 (ENSVVUG00000016071) #25	RHOC (ENSVVUG00000016051) #26	PPM1J (ENSVVUG00000016017) #27	TAFA3 (ENSVVUG00000016005) #28	ENSVVUG00000015995 ##29	ENSVVUG00000015991 #29	LRIG2 (ENSVVUG00000015931)	MAGI3 (ENSVVUG00000015809)	ENSVVUG00000015768	ENSVVUG00000015763	ENSVVUG00000015758	IVL (ENSVVUG00000015746)	ENSVVUG00000015741
Canis_lupus	ANCESTRAL SPECIES	10				ENSGT00390000001017.h #10	ENSGT00940000163644.g.a.a	ENSGT00940000162223 #11	ENSGT00390000010711.i #12	ENSGT00390000015005 #14	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00390000009786.u.a.b.a	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b.a #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00940000164092	ENSGT00940000163248.k	ENSGT00940000164168	ENSGT01050000246051	ENSGT00780000122937
Dog	MODERN SPECIES	8				ENSCAFG00845008808	ENSCAFG00845008673 #10	ENSCAFG00845008615	ENSCAFG00845008533 #11	ENSCAFG00845008469 #14	ADORA3 (ENSCAFG00845008429) #16	RAP1A (ENSCAFG00845008254) #17	INKA2 (ENSCAFG00845008216) #18	DDX20 (ENSCAFG00845008144) #19	KCND3 (ENSCAFG00845008017) #20	ENSCAFG00845007793	CTTNBP2NL (ENSCAFG00845007745) #21	WNT2B (ENSCAFG00845007687) #22	ST7L (ENSCAFG00845007407) #23	CAPZA1 (ENSCAFG00845006727) #24	MOV10 (ENSCAFG00845006911) #25	RHOC (ENSCAFG00845006667) #26	PPM1J (ENSCAFG00845006424) #27	TAFA3 (ENSCAFG00845006369) #28	ENSCAFG00845006291 ##29	LRIG2 (ENSCAFG00845006193)	MAGI3 (ENSCAFG00845005973)	ENSCAFG00845005870	ENSCAFG00845005843	PRR9 (ENSCAFG00845026679)	ENSCAFG00845026661	ENSCAFG00845026646	ENSCAFG00845026586
Dingo	MODERN SPECIES	223						ENSCAFG00020007955 #10	OVGP1 (ENSCAFG00020007980) #11	ENSCAFG00020007983 #12	ADORA3 (ENSCAFG00020007993) #16	RAP1A (ENSCAFG00020008027) #17	INKA2 (ENSCAFG00020008030) #18	DDX20 (ENSCAFG00020008055) #19	KCND3 (ENSCAFG00020008441) #20	ENSCAFG00020008492	CTTNBP2NL (ENSCAFG00020008495) #21	WNT2B (ENSCAFG00020008500) #22	CAPZA1 (ENSCAFG00020008507) #24	MOV10 (ENSCAFG00020008556) #25	RHOC (ENSCAFG00020008569) #26	PPM1J (ENSCAFG00020008575) #27	TAFA3 (ENSCAFG00020008583) #28	ENSCAFG00020008611 #29	ENSCAFG00020008635 ##29	LRIG2 (ENSCAFG00020008658)	MAGI3 (ENSCAFG00020008708)	ENSCAFG00020009346	ENSCAFG00020009355	ENSCAFG00020009390	ENSCAFG00020009395	LCE7A (ENSCAFG00020009396)	ENSCAFG00020009400
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644.g.b	ENSGT00940000163644.g.a	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Mustelinae	ANCESTRAL SPECIES	47	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000163644.g.b	ENSGT00940000163644.g.a	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
American mink	MODERN SPECIES	366	CHIA (ENSNVIG00000000368) #9	PIFO (ENSNVIG00000000505) #10	ENSNVIG00000000590	ENSNVIG00000000630	ENSNVIG00000000706 #11	MEP50 (ENSNVIG00000000841) #12	ATP5PB (ENSNVIG00000000953) #13	C1orf162 (ENSNVIG00000001003) #14	ENSNVIG00000001026 #15	ADORA3 (ENSNVIG00000001050) #16	RAP1A (ENSNVIG00000001103) #17	INKA2 (ENSNVIG00000001144) #18	DDX20 (ENSNVIG00000001179) #19	KCND3 (ENSNVIG00000001280) #20	CTTNBP2NL (ENSNVIG00000001459) #21	WNT2B (ENSNVIG00000001502) #22	ST7L (ENSNVIG00000001532) #23	CAPZA1 (ENSNVIG00000001623) #24	MOV10 (ENSNVIG00000001682) #25	RHOC (ENSNVIG00000001815) #26	PPM1J (ENSNVIG00000001869) #27	TAFA3 (ENSNVIG00000001972) #28
Ferret	MODERN SPECIES	312	DENND2D (ENSMPUG00000004249) #8	CHIA (ENSMPUG00000004304) #9	ENSMPUG00000004330 #10	ENSMPUG00000004336	OVGP1 (ENSMPUG00000004475) #11	WDR77 (ENSMPUG00000004756) #12	ATP5PB (ENSMPUG00000004772) #13	ENSMPUG00000004819 #15	ADORA3 (ENSMPUG00000004839) #16	RAP1A (ENSMPUG00000004842) #17	INKA2 (ENSMPUG00000004912) #18	DDX20 (ENSMPUG00000004921) #19	KCND3 (ENSMPUG00000004931) #20	CTTNBP2NL (ENSMPUG00000004952) #21	ST7L (ENSMPUG00000004958) #23	WNT2B (ENSMPUG00000004969) #22	CAPZA1 (ENSMPUG00000004977) #24	MOV10 (ENSMPUG00000004985) #25	RHOC (ENSMPUG00000005141) #26	PPM1J (ENSMPUG00000005170) #27	TAFA3 (ENSMPUG00000005231) #28	ENSMPUG00000005243 #29	ENSMPUG00000005249 ##29	LRIG2 (ENSMPUG00000005254)	MAGI3 (ENSMPUG00000005267)	PHTF1 (ENSMPUG00000005281)	RSBN1 (ENSMPUG00000005293)	PTPN22 (ENSMPUG00000005305)	BCL2L15 (ENSMPUG00000005322)	AP4B1 (ENSMPUG00000005335)	DCLRE1B (ENSMPUG00000005347)
Ursidae	ANCESTRAL SPECIES	32	ENSGT00940000154557.d ##9	ENSGT00390000001017 #10	ENSGT00940000163644.g.b	ENSGT00940000163644.g.a	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958.h #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.e.a ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Giant Panda	MODERN SPECIES	11	CEPT1 (ENSAMEG00000005727) #7	DENND2D (ENSAMEG00000005697) #8	PIFO (ENSAMEG00000005665) #10	ENSAMEG00000029447	PGB2 (ENSAMEG00000005567)	WDR77 (ENSAMEG00000005454) #12	ATP5PB (ENSAMEG00000026613) #13	C1orf162 (ENSAMEG00000005430) #14	TMIGD3 (ENSAMEG00000005422) #15	RAP1A (ENSAMEG00000005384) #17	INKA2 (ENSAMEG00000005378) #18	DDX20 (ENSAMEG00000005344) #19	KCND3 (ENSAMEG00000003632) #20	CTTNBP2NL (ENSAMEG00000003620) #21	ST7L (ENSAMEG00000003590) #23	WNT2B (ENSAMEG00000003598) #22	CAPZA1 (ENSAMEG00000003570) #24	MOV10 (ENSAMEG00000003505) #25	RHOC (ENSAMEG00000003493) #26	PPM1J (ENSAMEG00000003477) #27	TAFA3 (ENSAMEG00000031120) #28	ENSAMEG00000028802 #29	ENSAMEG00000003449 ##29	LRIG2 (ENSAMEG00000003413)	MAGI3 (ENSAMEG00000003390)	PHTF1 (ENSAMEG00000003343)	RSBN1 (ENSAMEG00000003339)	PTPN22 (ENSAMEG00000003307)	BCL2L15 (ENSAMEG00000003302)	AP4B1 (ENSAMEG00000003279)	HIPK1 (ENSAMEG00000003215)
Ursus	ANCESTRAL SPECIES	70	ENSGT00940000154557.d ##9	ENSGT00390000001017 #10	ENSGT00940000163644.g.b	ENSGT00940000163644.g.a	ENSGT00940000162223.c #11	ENSGT00390000010711 #12	ENSGT00390000001958.h #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29
Polar bear	MODERN SPECIES	255	PIFO (ENSUMAG00000013709) #10	ENSUMAG00000013714	ENSUMAG00000013716	ENSUMAG00000013735 #11	ENSUMAG00000013859	WDR77 (ENSUMAG00000013868) #12	ATP5PB (ENSUMAG00000013875) #13	C1orf162 (ENSUMAG00000013876) #14	ENSUMAG00000013881 #15	ADORA3 (ENSUMAG00000013887) #16	RAP1A (ENSUMAG00000013890) #17	INKA2 (ENSUMAG00000013892) #18	DDX20 (ENSUMAG00000013897) #19	KCND3 (ENSUMAG00000013918) #20	CTTNBP2NL (ENSUMAG00000013946) #21	WNT2B (ENSUMAG00000013949) #22	ST7L (ENSUMAG00000014015) #23	CAPZA1 (ENSUMAG00000014563) #24	MOV10 (ENSUMAG00000014721) #25	RHOC (ENSUMAG00000015654) #26	PPM1J (ENSUMAG00000015659) #27	TAFA3 (ENSUMAG00000015665) #28	ENSUMAG00000015670 #29
American black bear	MODERN SPECIES	379															CTTNBP2NL (ENSUAMG00000006710) #21	WNT2B (ENSUAMG00000006712) #22	ST7L (ENSUAMG00000006715) #23	CAPZA1 (ENSUAMG00000006717) #24	MOV10 (ENSUAMG00000006720) #25	RHOC (ENSUAMG00000006721) #26	PPM1J (ENSUAMG00000006724) #27	TAFA3 (ENSUAMG00000006726) #28
Atlantogenata	ANCESTRAL SPECIES	26	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162989.c	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Afrotheria	ANCESTRAL SPECIES	31	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162989.c	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Afrotheria_a	ANCESTRAL SPECIES	31	ENSGT00940000154557.c.a #9	ENSGT00390000001017 #10	ENSGT00940000162989.c	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955.e.b #29	ENSGT00940000154955.f ##29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Elephant	MODERN SPECIES	26	CHIA (ENSLAFG00000018294) #9	PIFO (ENSLAFG00000000550) #10	ENSLAFG00000026035	ENSLAFG00000030474	ENSLAFG00000017713 #11	WDR77 (ENSLAFG00000004805) #12	ATP5PB (ENSLAFG00000004809) #13	C1orf162 (ENSLAFG00000004811) #14	ENSLAFG00000027080 #15	ADORA3 (ENSLAFG00000004812) #16	RAP1A (ENSLAFG00000000086) #17	INKA2 (ENSLAFG00000029670) #18	DDX20 (ENSLAFG00000014646) #19	KCND3 (ENSLAFG00000014648) #20	CTTNBP2NL (ENSLAFG00000023083) #21	WNT2B (ENSLAFG00000022115) #22	ST7L (ENSLAFG00000000234) #23	CAPZA1 (ENSLAFG00000000238) #24	MOV10 (ENSLAFG00000000239) #25	RHOC (ENSLAFG00000030194) #26	PPM1J (ENSLAFG00000013073) #27	TAFA3 (ENSLAFG00000011245) #28	SLC16A1 (ENSLAFG00000012938) #29	ENSLAFG00000027758 ##29	LRIG2 (ENSLAFG00000022642)	ENSLAFG00000029115	MAGI3 (ENSLAFG00000008032)	PHTF1 (ENSLAFG00000008042)	RSBN1 (ENSLAFG00000008049)	PTPN22 (ENSLAFG00000008050)	BCL2L15 (ENSLAFG00000008055)
Hyrax	MODERN SPECIES	2427																WNT2B (ENSPCAG00000003591) #22	ST7L (ENSPCAG00000003628) #23	CAPZA1 (ENSPCAG00000003707) #24	MOV10 (ENSPCAG00000003786) #25	RHOC (ENSPCAG00000003910) #26	PPM1J (ENSPCAG00000003961) #27	ENSPCAG00000004020 #28
Tenrec	MODERN SPECIES	3861															CTTNBP2NL (ENSETEG00000002378) #21	WNT2B (ENSETEG00000002381) #22	ST7L (ENSETEG00000002385) #23	ENSETEG00000002388	CAPZA1 (ENSETEG00000002390) #24	MOV10 (ENSETEG00000002395) #25	RHOC (ENSETEG00000002399) #26
Xenarthra	ANCESTRAL SPECIES	239						ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00390000015005 #14	ENSGT00930000151073 #15	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00390000000873.a.a #23	ENSGT00940000159166 #22	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27
Sloth	MODERN SPECIES	9145																WNT2B (ENSCHOG00000010217) #22
Armadillo	MODERN SPECIES	3108					ENSDNOG00000046177 #12	ENSDNOG00000031419 #13	ENSDNOG00000002467 #14	TMIGD3 (ENSDNOG00000004748) #15	RAP1A (ENSDNOG00000007809) #17	INKA2 (ENSDNOG00000043204) #18	DDX20 (ENSDNOG00000030865) #19	ENSDNOG00000049590 #20	ENSDNOG00000003964 #20	CTTNBP2NL (ENSDNOG00000043863) #21	ST7L (ENSDNOG00000036591) #23	WNT2B (ENSDNOG00000001790) #22	ENSDNOG00000036861 #24	MOV10 (ENSDNOG00000007631) #25	RHOC (ENSDNOG00000012825) #26	PPM1J (ENSDNOG00000017928) #27
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000165936	ENSGT00940000154557 #9	ENSGT00390000001017 #10	ENSGT00940000162989.c.c	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Opossum	MODERN SPECIES	1	CHIA (ENSMODG00000001467) #9	PIFO (ENSMODG00000025691) #10	ENSMODG00000001433	ENSMODG00000023235	ENSMODG00000001372	ENSMODG00000001338 #11	WDR77 (ENSMODG00000001364) #12	ATP5PB (ENSMODG00000001351) #13	ADORA3 (ENSMODG00000046968) #16	ENSMODG00000049351	ENSMODG00000001323 #17	INKA2 (ENSMODG00000038120) #18	DDX20 (ENSMODG00000001311) #19	KCND3 (ENSMODG00000001282) #20	CTTNBP2NL (ENSMODG00000040523) #21	WNT2B (ENSMODG00000001196) #22	ST7L (ENSMODG00000001162) #23	CAPZA1 (ENSMODG00000036946) #24	MOV10 (ENSMODG00000001008) #25	RHOC (ENSMODG00000000981) #26	ENSMODG00000027725 #28	SLC16A1 (ENSMODG00000000929) #29	LRIG2 (ENSMODG00000000908)	MAGI3 (ENSMODG00000000874)	PHTF1 (ENSMODG00000000803)	RSBN1 (ENSMODG00000000742)	ENSMODG00000000719	BCL2L15 (ENSMODG00000000706)	AP4B1 (ENSMODG00000000699)	DCLRE1B (ENSMODG00000000672)	HIPK1 (ENSMODG00000000665)
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000165936	ENSGT00940000154557 #9	ENSGT00390000001017 #10	ENSGT00940000162989.c.c	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b.e	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Diprotodontia	ANCESTRAL SPECIES	5	ENSGT00950000182931.A #8	ENSGT00940000163351	ENSGT00940000154557 #9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b.e	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Diprotodontia_a	ANCESTRAL SPECIES	6	ENSGT00950000182931.A #8	ENSGT00940000163351	ENSGT00940000154557 #9	ENSGT00390000001017 #10	ENSGT00940000163644	ENSGT00940000162223 #11	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00930000151073 #15	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b.e	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
koala	MODERN SPECIES	4	DENND2D (ENSPCIG00000021982) #8	CHI3L2 (ENSPCIG00000021992)	CHIA (ENSPCIG00000022003) #9	ENSPCIG00000032895 #10	ENSPCIG00000027740	ENSPCIG00000027738 #11	ENSPCIG00000027736 #12	ATP5PB (ENSPCIG00000027732) #13	ENSPCIG00000027725 #15	ADORA3 (ENSPCIG00000027729) #16	RAP1A (ENSPCIG00000027723) #17	INKA2 (ENSPCIG00000027722) #18	DDX20 (ENSPCIG00000027721) #19	KCND3 (ENSPCIG00000027716) #20	CTTNBP2NL (ENSPCIG00000035950) #21	WNT2B (ENSPCIG00000002621) #22	ST7L (ENSPCIG00000002636) #23	CAPZA1 (ENSPCIG00000002665) #24	MOV10 (ENSPCIG00000002681) #25	PPM1J (ENSPCIG00000002707) #27	TAFA3 (ENSPCIG00000035663) #28	SLC16A1 (ENSPCIG00000002726) #29	LRIG2 (ENSPCIG00000002741)	ENSPCIG00000002753	MAGI3 (ENSPCIG00000002776)	PHTF1 (ENSPCIG00000002828)	RSBN1 (ENSPCIG00000030831)	ENSPCIG00000032515	BCL2L15 (ENSPCIG00000035032)	AP4B1 (ENSPCIG00000020805)	DCLRE1B (ENSPCIG00000031622)
Common wonbat	MODERN SPECIES	920				ENSVURG00010008895 #9	ENSVURG00010008873 #10	ENSVURG00010008862	ENSVURG00010008853 #11	WDR77 (ENSVURG00010008840) #12	ATP5PB (ENSVURG00010008809) #13	TMIGD3 (ENSVURG00010008780) #15	RAP1A (ENSVURG00010008769) #17	INKA2 (ENSVURG00010008763) #18	DDX20 (ENSVURG00010008652) #19	KCND3 (ENSVURG00010008613) #20	CTTNBP2NL (ENSVURG00010008595) #21	WNT2B (ENSVURG00010008584) #22	ST7L (ENSVURG00010008340) #23	ENSVURG00010008322 #24	MOV10 (ENSVURG00010008273) #25	RHOC (ENSVURG00010008254) #26	PPM1J (ENSVURG00010008231) #27	TAFA3 (ENSVURG00010008220) #28	SLC16A1 (ENSVURG00010008207) #29	LRIG2 (ENSVURG00010008184)	MAGI3 (ENSVURG00010007775)	ENSVURG00010007649	RSBN1 (ENSVURG00010007620)	PTPN22 (ENSVURG00010007583)	BCL2L15 (ENSVURG00010007567)	AP4B1 (ENSVURG00010007547)	DCLRE1B (ENSVURG00010007535)
Wallaby	MODERN SPECIES	12718																WNT2B (ENSMEUG00000002308) #22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000012514 #9	ENSSHAG00000012627 #9	PIFO (ENSSHAG00000012723) #10	ENSSHAG00000012762	ENSSHAG00000012931	ENSSHAG00000013052 #11	WDR77 (ENSSHAG00000029976) #12	ATP5PB (ENSSHAG00000013185) #13	ENSSHAG00000013320 #15	ADORA3 (ENSSHAG00000013411) #16	RAP1A (ENSSHAG00000014117) #17	INKA2 (ENSSHAG00000030633) #18	DDX20 (ENSSHAG00000014518) #19	KCND3 (ENSSHAG00000023027) #20	CTTNBP2NL (ENSSHAG00000024029) #21	WNT2B (ENSSHAG00000017161) #22	ST7L (ENSSHAG00000017238) #23	CAPZA1 (ENSSHAG00000030863) #24	MOV10 (ENSSHAG00000000450) #25	PPM1J (ENSSHAG00000002272) #27	ENSSHAG00000027304 #28	SLC16A1 (ENSSHAG00000031010) #29	LRIG2 (ENSSHAG00000007869)	MAGI3 (ENSSHAG00000010442)	PHTF1 (ENSSHAG00000011937)	RSBN1 (ENSSHAG00000030446)	PTPN22 (ENSSHAG00000026786)	BCL2L15 (ENSSHAG00000013069)	AP4B1 (ENSSHAG00000013155)	DCLRE1B (ENSSHAG00000013211)	HIPK1 (ENSSHAG00000013450)
Platypus	MODERN SPECIES	18	GPR37L1 (ENSOANG00000040858)	ELF3 (ENSOANG00000005784)	GUCA1B (ENSOANG00000002014)	GUCA1A (ENSOANG00000002015)	ENSOANG00000050013	ENSOANG00000036517	WDR77 (ENSOANG00000002018) #12	ATP5PB (ENSOANG00000002019) #13	ADORA3 (ENSOANG00000004236) #16	RAP1A (ENSOANG00000043174) #17	INKA2 (ENSOANG00000044025) #18	ENSOANG00000043615 #19	ENSOANG00000040432	KCND3 (ENSOANG00000044751) #20	CTTNBP2NL (ENSOANG00000047002) #21	WNT2B (ENSOANG00000007583) #22	ST7L (ENSOANG00000013889) #23	CAPZA1 (ENSOANG00000039310) #24	MOV10 (ENSOANG00000022581) #25	RHOC (ENSOANG00000047237) #26	PPM1J (ENSOANG00000002615) #27	TAFA3 (ENSOANG00000002614) #28	SLC16A1 (ENSOANG00000036530) #29	LRIG2 (ENSOANG00000002648)	MAGI3 (ENSOANG00000002645)	RSBN1 (ENSOANG00000002642)	PTPN22 (ENSOANG00000002998)	AP4B1 (ENSOANG00000002999)	HIPK1 (ENSOANG00000050845)	OLFML3 (ENSOANG00000045486)	SYT6 (ENSOANG00000041111)
Sauria	ANCESTRAL SPECIES	24	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00950000182977.A.h	ENSGT00390000018096	ENSGT00940000157025
Lepidosauria	ANCESTRAL SPECIES	6	ENSGT00940000160260	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.b ##26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00950000182977.A.h	ENSGT00390000018096	ENSGT00940000157025
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000160260	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.k #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.b ##26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00950000182977.A.h	ENSGT00390000018096	ENSGT00940000157025
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000160260	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.k #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B.e #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.b ##26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00950000182977.A.h	ENSGT00390000018096	ENSGT00940000157025
Common wall lizard	MODERN SPECIES	14	IRF6 (ENSPMRG00000006027)	GUCA1B (ENSPMRG00000006038)	GUCA1A (ENSPMRG00000006048)	GUCA1ANB (ENSPMRG00000006056)	C6orf132 (ENSPMRG00000006062)	WDR77 (ENSPMRG00000006067) #12	ENSPMRG00000006074	ENSPMRG00000006075 #13	ENSPMRG00000006083 #16	ENSPMRG00000006087 #16	RAP1A (ENSPMRG00000006096) #17	INKA2 (ENSPMRG00000006109) #18	DDX20 (ENSPMRG00000006115) #19	KCND3 (ENSPMRG00000006124) #20	ENSPMRG00000006131 #21	WNT2B (ENSPMRG00000006134) #22	ST7L (ENSPMRG00000006195) #23	CAPZA1 (ENSPMRG00000006376) #24	MOV10 (ENSPMRG00000006402) #25	ENSPMRG00000006418 ##26	PPM1J (ENSPMRG00000006434) #27	TAFA3 (ENSPMRG00000006452) #28	ENSPMRG00000006460	ENSPMRG00000006477	SLC16A1 (ENSPMRG00000006485) #29	LRIG2 (ENSPMRG00000006503)	ENSPMRG00000006523	ENSPMRG00000006528	PHTF1 (ENSPMRG00000006539)	RSBN1 (ENSPMRG00000006554)	PTPN22 (ENSPMRG00000003036)
Argentine black and white tegu	MODERN SPECIES	28	C1orf74 (ENSSMRG00000004463)	IRF6 (ENSSMRG00000004459)	GUCA1B (ENSSMRG00000004455)	GUCA1A (ENSSMRG00000004446)	GUCA1ANB (ENSSMRG00000004443)	ENSSMRG00000004441	WDR77 (ENSSMRG00000004435) #12	ATP5PB (ENSSMRG00000004429) #13	ADORA3 (ENSSMRG00000004425) #16	RAP1A (ENSSMRG00000004415) #17	ENSSMRG00000004409	INKA2 (ENSSMRG00000004400) #18	DDX20 (ENSSMRG00000004314) #19	KCND3 (ENSSMRG00000004290) #20	CTTNBP2NL (ENSSMRG00000004254) #21	WNT2B (ENSSMRG00000004250) #22	ST7L (ENSSMRG00000004244) #23	CAPZA1 (ENSSMRG00000004242) #24	MOV10 (ENSSMRG00000004240) #25	ENSSMRG00000004230 ##26	PPM1J (ENSSMRG00000004228) #27	TAFA3 (ENSSMRG00000004227) #28	SLC16A1 (ENSSMRG00000004225) #29	LRIG2 (ENSSMRG00000004221)	MAGI3 (ENSSMRG00000004207)	PHTF1 (ENSSMRG00000004196)	RSBN1 (ENSSMRG00000004191)	PTPN22 (ENSSMRG00000004169)	ENSSMRG00000004164	ENSSMRG00000004163	AP4B1 (ENSSMRG00000004155)
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.k #16	ENSGT00940000164058	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.b ##26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000160097.c.b	ENSGT00940000160260	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.b ##26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Elapidae_a	ANCESTRAL SPECIES	3	ENSGT00940000160097.c.b	ENSGT00940000160260	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.b ##26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00960000192735	ENSGT00940000157025	ENSGT00940000158175
Acanthophiinae	ANCESTRAL SPECIES	2	ENSGT00940000160097.c.b	ENSGT00940000160260	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.b ##26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00960000192735	ENSGT00940000157025	ENSGT00940000158175
Mainland tiger snake	MODERN SPECIES	69	C1orf74 (ENSNSUG00000013952)	TRAF3IP3 (ENSNSUG00000013951)	ENSNSUG00000013950	ENSNSUG00000013949	GUCA1B (ENSNSUG00000013948)	GUCA1A (ENSNSUG00000013947)	GUCA1ANB (ENSNSUG00000013946)	C6orf132 (ENSNSUG00000013945)	WDR77 (ENSNSUG00000013944) #12	ATP5PB (ENSNSUG00000013943) #13	RAP1A (ENSNSUG00000013942) #17	INKA2 (ENSNSUG00000013941) #18	DDX20 (ENSNSUG00000013890) #19	KCND3 (ENSNSUG00000013886) #20	CTTNBP2NL (ENSNSUG00000013875) #21	WNT2B (ENSNSUG00000013874) #22	ST7L (ENSNSUG00000013873) #23	CAPZA1 (ENSNSUG00000013872) #24	MOV10 (ENSNSUG00000013738) #25	ENSNSUG00000013737 ##26	PPM1J (ENSNSUG00000013736) #27	TAFA3 (ENSNSUG00000013734) #28	SLC16A1 (ENSNSUG00000013733) #29	LRIG2 (ENSNSUG00000013732)	MAGI3 (ENSNSUG00000013731)	PHTF1 (ENSNSUG00000013729)	RSBN1 (ENSNSUG00000013728)	ENSNSUG00000013726	ENSNSUG00000013724	AP4B1 (ENSNSUG00000013722)	DCLRE1B (ENSNSUG00000013711)
Eastern brown snake	MODERN SPECIES	57	HSD11B1 (ENSPTXG00000006551)	TRAF3IP3 (ENSPTXG00000006552)	C1orf74 (ENSPTXG00000006553)	IRF6 (ENSPTXG00000006554)	GUCA1B (ENSPTXG00000006555)	GUCA1A (ENSPTXG00000006556)	GUCA1ANB (ENSPTXG00000006557)	C6orf132 (ENSPTXG00000006558)	WDR77 (ENSPTXG00000006559) #12	ATP5PB (ENSPTXG00000006560) #13	RAP1A (ENSPTXG00000006561) #17	INKA2 (ENSPTXG00000006563) #18	DDX20 (ENSPTXG00000006564) #19	KCND3 (ENSPTXG00000006566) #20	CTTNBP2NL (ENSPTXG00000006568) #21	WNT2B (ENSPTXG00000006569) #22	ST7L (ENSPTXG00000006570) #23	CAPZA1 (ENSPTXG00000006571) #24	MOV10 (ENSPTXG00000006573) #25	ENSPTXG00000007551 ##26	PPM1J (ENSPTXG00000007559) #27	ENSPTXG00000007591	SLC16A1 (ENSPTXG00000007608) #29	LRIG2 (ENSPTXG00000007609)	MAGI3 (ENSPTXG00000007612)	PHTF1 (ENSPTXG00000007617)	RSBN1 (ENSPTXG00000007621)	ENSPTXG00000007625	AP4B1 (ENSPTXG00000007627)	DCLRE1B (ENSPTXG00000007632)	HIPK1 (ENSPTXG00000007635)
Blue-lipped sea krait	MODERN SPECIES	7280																WNT2B (ENSLLTG00000003281) #22
Indian cobra	MODERN SPECIES	2	HSD11B1 (ENSNNAG00000007021)	C1orf74 (ENSNNAG00000007009)	TRAF3IP3 (ENSNNAG00000006967)	IRF6 (ENSNNAG00000006946)	GUCA1B (ENSNNAG00000006930)	GUCA1A (ENSNNAG00000006908)	GUCA1ANB (ENSNNAG00000006898)	C6orf132 (ENSNNAG00000006875)	WDR77 (ENSNNAG00000006851) #12	ATP5PB (ENSNNAG00000006822) #13	RAP1A (ENSNNAG00000006802) #17	INKA2 (ENSNNAG00000006790) #18	DDX20 (ENSNNAG00000006745) #19	KCND3 (ENSNNAG00000006714) #20	CTTNBP2NL (ENSNNAG00000006693) #21	WNT2B (ENSNNAG00000006682) #22	ST7L (ENSNNAG00000006605) #23	CAPZA1 (ENSNNAG00000006567) #24	MOV10 (ENSNNAG00000006503) #25	ENSNNAG00000006484 ##26	PPM1J (ENSNNAG00000006468) #27	TAFA3 (ENSNNAG00000006455) #28	SLC16A1 (ENSNNAG00000006442) #29	LRIG2 (ENSNNAG00000006399)	MAGI3 (ENSNNAG00000006329)	PHTF1 (ENSNNAG00000006285)	RSBN1 (ENSNNAG00000006255)	PTPN22 (ENSNNAG00000006216)	BCL2L15 (ENSNNAG00000006208)	AP4B1 (ENSNNAG00000006177)	DCLRE1B (ENSNNAG00000006167)
Lizard	MODERN SPECIES	3	GUCA1A (ENSACAG00000006019)	GUCA1ANB (ENSACAG00000006037)	C6orf132 (ENSACAG00000039371)	WDR77 (ENSACAG00000037494) #12	ATP5PB (ENSACAG00000036967) #13	ADORA3 (ENSACAG00000006155) #16	ENSACAG00000028340	ENSACAG00000006188	ENSACAG00000029082	INKA2 (ENSACAG00000035327) #18	DDX20 (ENSACAG00000006235) #19	ENSACAG00000039132 #20	ENSACAG00000036320	ENSACAG00000040196	CTTNBP2NL (ENSACAG00000042030) #21	WNT2B (ENSACAG00000017925) #22	ST7L (ENSACAG00000017929) #23	CAPZA1 (ENSACAG00000017934) #24	MOV10 (ENSACAG00000017938) #25	ENSACAG00000037551	ENSACAG00000041408 ##26	PPM1J (ENSACAG00000017942) #27	TAFA3 (ENSACAG00000035727) #28	SLC16A1 (ENSACAG00000017946) #29	LRIG2 (ENSACAG00000017947)	AP4B1 (ENSACAG00000002204)	DCLRE1B (ENSACAG00000044026)	HIPK1 (ENSACAG00000002309)	OLFML3 (ENSACAG00000045151)	ENSACAG00000036998	SYT6 (ENSACAG00000002524)
tuatara	MODERN SPECIES	186															CTTNBP2NL (ENSSPUG00000013321) #21	WNT2B (ENSSPUG00000013308) #22	ST7L (ENSSPUG00000013291) #23	CAPZA1 (ENSSPUG00000013282) #24	MOV10 (ENSSPUG00000013262) #25	ENSSPUG00000013248 ##26	ENSSPUG00000013216	PPM1J (ENSSPUG00000013195) #27	TAFA3 (ENSSPUG00000013163) #28	ENSSPUG00000013147	SLC16A1 (ENSSPUG00000013137) #29	ENSSPUG00000013127	LRIG2 (ENSSPUG00000013085)	MAGI3 (ENSSPUG00000013025)	PHTF1 (ENSSPUG00000012872)	RSBN1 (ENSSPUG00000012807)	PTPN22 (ENSSPUG00000012773)
Archelosauria	ANCESTRAL SPECIES	22	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00950000182977.A.h	ENSGT00390000018096	ENSGT00940000157025
Cryptodira	ANCESTRAL SPECIES	27	ENSGT00940000160260	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT01000000218223	ENSGT00950000182977.A.h	ENSGT00390000018096
Testudinoidea	ANCESTRAL SPECIES	33	ENSGT00940000160260	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT01000000221725	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.b ##26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00950000182977.A.h	ENSGT00390000018096
Emydidae	ANCESTRAL SPECIES	25	ENSGT00940000160260	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT01000000221725	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.b ##26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00950000182977.A.h	ENSGT00390000018096
painted turtle	MODERN SPECIES	775	TRAF3IP3 (ENSCPBG00000021277)	C1orf74 (ENSCPBG00000021275)	IRF6 (ENSCPBG00000021272)	GUCA1B (ENSCPBG00000021270)	GUCA1A (ENSCPBG00000021269)	GUCA1ANB (ENSCPBG00000021268)	C6orf132 (ENSCPBG00000021266)	WDR77 (ENSCPBG00000021264) #12	ATP5PB (ENSCPBG00000021263) #13	ADORA3 (ENSCPBG00000021261) #16	RAP1A (ENSCPBG00000021259) #17	INKA2 (ENSCPBG00000021258) #18	DDX20 (ENSCPBG00000021256) #19	KCND3 (ENSCPBG00000021253) #20	CTTNBP2NL (ENSCPBG00000021252) #21	WNT2B (ENSCPBG00000021251) #22	ST7L (ENSCPBG00000020519) #23	CAPZA1 (ENSCPBG00000018976) #24	MOV10 (ENSCPBG00000018937) #25	ENSCPBG00000018933 ##26	PPM1J (ENSCPBG00000018491) #27	TAFA3 (ENSCPBG00000018482) #28	SLC16A1 (ENSCPBG00000018477) #29	LRIG2 (ENSCPBG00000018461)	MAGI3 (ENSCPBG00000017027)	PHTF1 (ENSCPBG00000016998)
Three-toed box turtle	MODERN SPECIES	404	TRAF3IP3 (ENSTMTG00000018166)	C1orf74 (ENSTMTG00000018221)	IRF6 (ENSTMTG00000018233)	GUCA1B (ENSTMTG00000018254)	GUCA1A (ENSTMTG00000018271)	GUCA1ANB (ENSTMTG00000018284)	C6orf132 (ENSTMTG00000018298)	WDR77 (ENSTMTG00000018355) #12	ENSTMTG00000018380	ADORA3 (ENSTMTG00000018391) #16	RAP1A (ENSTMTG00000018416) #17	INKA2 (ENSTMTG00000018439) #18	DDX20 (ENSTMTG00000018452) #19	KCND3 (ENSTMTG00000018489) #20	CTTNBP2NL (ENSTMTG00000018548) #21	WNT2B (ENSTMTG00000018557) #22	ST7L (ENSTMTG00000018800) #23	CAPZA1 (ENSTMTG00000020635) #24	ENSTMTG00000020641	MOV10 (ENSTMTG00000020657) #25	ENSTMTG00000020736 ##26	PPM1J (ENSTMTG00000020762) #27	TAFA3 (ENSTMTG00000020993) #28	SLC16A1 (ENSTMTG00000021007) #29	LRIG2 (ENSTMTG00000021013)	MAGI3 (ENSTMTG00000021024)	PHTF1 (ENSTMTG00000021036)	RSBN1 (ENSTMTG00000021045)	ENSTMTG00000021052	ENSTMTG00000021060	BCL2L15 (ENSTMTG00000021065)
Testudinidae	ANCESTRAL SPECIES	42	ENSGT00940000160260	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a #16	ENSGT00940000160251 #17	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT01000000221725	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.b ##26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00950000182977.A.h	ENSGT00390000018096
Goode s thornscrub tortoise	MODERN SPECIES	18	TRAF3IP3 (ENSGEVG00005003436)	C1orf74 (ENSGEVG00005003447)	IRF6 (ENSGEVG00005003458)	GUCA1B (ENSGEVG00005003473)	GUCA1A (ENSGEVG00005003480)	GUCA1ANB (ENSGEVG00005003485)	C6orf132 (ENSGEVG00005003492)	ENSGEVG00005003507 #12	ENSGEVG00005003525 #13	ENSGEVG00005000153 #16	RAP1A (ENSGEVG00005000181) #17	INKA2 (ENSGEVG00005000258) #18	DDX20 (ENSGEVG00005000388) #19	KCND3 (ENSGEVG00005000440) #20	CTTNBP2NL (ENSGEVG00005000498) #21	WNT2B (ENSGEVG00005000590) #22	ST7L (ENSGEVG00005001196) #23	CAPZA1 (ENSGEVG00005002138) #24	ENSGEVG00005002161	MOV10 (ENSGEVG00005002178) #25	ENSGEVG00005002209 ##26	PPM1J (ENSGEVG00005002290) #27	TAFA3 (ENSGEVG00005002496) #28	SLC16A1 (ENSGEVG00005002503) #29	LRIG2 (ENSGEVG00005002516)	MAGI3 (ENSGEVG00005002855)	PHTF1 (ENSGEVG00005003592)	RSBN1 (ENSGEVG00005003706)	PTPN22 (ENSGEVG00005003735)	BCL2L15 (ENSGEVG00005003775)	AP4B1 (ENSGEVG00005003783)
Abingdon island giant tortoise	MODERN SPECIES	155																WNT2B (ENSCABG00000013872) #22	ST7L (ENSCABG00000013902) #23	CAPZA1 (ENSCABG00000014050) #24	ENSCABG00000014083	MOV10 (ENSCABG00000014102) #25	ENSCABG00000014396 ##26	PPM1J (ENSCABG00000014399) #27	TAFA3 (ENSCABG00000014650) #28	SLC16A1 (ENSCABG00000014654) #29
Chinese turtle	MODERN SPECIES	740	C1orf74 (ENSPSIG00000003596)	IRF6 (ENSPSIG00000003597)	GUCA1A (ENSPSIG00000003611)	GUCA1ANB (ENSPSIG00000001184)	ENSPSIG00000003623	ENSPSIG00000001202	WDR77 (ENSPSIG00000003624) #12	ATP5PB (ENSPSIG00000003628) #13	ADORA3 (ENSPSIG00000003631) #16	RAP1A (ENSPSIG00000003633) #17	INKA2 (ENSPSIG00000003634) #18	DDX20 (ENSPSIG00000003636) #19	ENSPSIG00000003643 #20	ENSPSIG00000003647 #20	CTTNBP2NL (ENSPSIG00000003650) #21	WNT2B (ENSPSIG00000003656) #22	ST7L (ENSPSIG00000003658) #23	CAPZA1 (ENSPSIG00000003661) #24	MOV10 (ENSPSIG00000003671) #25	RHOC (ENSPSIG00000003676) #26	PPM1J (ENSPSIG00000003680) #27	TAFA3 (ENSPSIG00000003688) #28	SLC16A1 (ENSPSIG00000003691) #29	LRIG2 (ENSPSIG00000003702)	ENSPSIG00000001218	MAGI3 (ENSPSIG00000003709)	PHTF1 (ENSPSIG00000003712)	RSBN1 (ENSPSIG00000003721)	HIPK1 (ENSPSIG00000003724)	ENSPSIG00000003734	AP4B1 (ENSPSIG00000003735)
Archosauria	ANCESTRAL SPECIES	23	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.n #16	ENSGT00940000160251 #17	ENSGT01030000234555.a.a.b.a.b.a.m #16	ENSGT00940000164058	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT01000000218223	ENSGT00390000018096	ENSGT00940000157025
Australian saltwater crocodile	MODERN SPECIES	53	TRAF3IP3 (ENSCPRG00005000061)	C1orf74 (ENSCPRG00005000052)	IRF6 (ENSCPRG00005015863)	GUCA1B (ENSCPRG00005015860)	GUCA1A (ENSCPRG00005015855)	ENSCPRG00005015853	WDR77 (ENSCPRG00005015852) #12	ATP5PB (ENSCPRG00005015850) #13	ENSCPRG00005015844 #16	ENSCPRG00005015841 #16	ENSCPRG00005015836	INKA2 (ENSCPRG00005015828) #18	DDX20 (ENSCPRG00005015827) #19	KCND3 (ENSCPRG00005015817) #20	CTTNBP2NL (ENSCPRG00005015808) #21	WNT2B (ENSCPRG00005015805) #22	ST7L (ENSCPRG00005015520) #23	ENSCPRG00005015479	CAPZA1 (ENSCPRG00005015473) #24	MOV10 (ENSCPRG00005015465) #25	RHOC (ENSCPRG00005015463) #26	PPM1J (ENSCPRG00005015439) #27	TAFA3 (ENSCPRG00005015432) #28	SLC16A1 (ENSCPRG00005015423) #29	LRIG2 (ENSCPRG00005015418)	MAGI3 (ENSCPRG00005015161)	ENSCPRG00005015045	RSBN1 (ENSCPRG00005015033)	ENSCPRG00005015024	ENSCPRG00005015020	ENSCPRG00005015015
Aves	ANCESTRAL SPECIES	25	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.n #16	ENSGT00940000160251 #17	ENSGT01030000234555.a.a.b.a.b.a.m #16	ENSGT00940000164058	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Neognathae	ANCESTRAL SPECIES	24	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.n #16	ENSGT00940000160251 #17	ENSGT01030000234555.a.a.b.a.b.a.m #16	ENSGT00940000164058	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Neognathae_b	ANCESTRAL SPECIES	24	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.n #16	ENSGT00940000160251 #17	ENSGT01030000234555.a.a.b.a.b.a.m #16	ENSGT00940000164058	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00990000204522	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Neognathae_c	ANCESTRAL SPECIES	27	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.n #16	ENSGT01030000234555.a.a.b.a.b.a.m #16	ENSGT00940000164058	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00990000204522	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025
Golden eagle	MODERN SPECIES	16	C1orf74 (ENSACCG00020012197)	IRF6 (ENSACCG00020012177)	GUCA1B (ENSACCG00020012146)	GUCA1A (ENSACCG00020012118)	GUCA1ANB (ENSACCG00020012095)	C6orf132 (ENSACCG00020012073)	WDR77 (ENSACCG00020012012) #12	ATP5PB (ENSACCG00020011976) #13	ENSACCG00020011950 #16	ENSACCG00020011892 #16	ENSACCG00020011862	INKA2 (ENSACCG00020011819) #18	DDX20 (ENSACCG00020011778) #19	KCND3 (ENSACCG00020011750) #20	CTTNBP2NL (ENSACCG00020011726) #21	WNT2B (ENSACCG00020011689) #22	ST7L (ENSACCG00020011647) #23	CAPZA1 (ENSACCG00020011605) #24	MOV10 (ENSACCG00020011568) #25	RHOC (ENSACCG00020011542) #26	PPM1J (ENSACCG00020011003) #27	TAFA3 (ENSACCG00020010992) #28	SLC16A1 (ENSACCG00020010983) #29	LRIG2 (ENSACCG00020010968)	MAGI3 (ENSACCG00020010934)	PHTF1 (ENSACCG00020010878)	RSBN1 (ENSACCG00020010821)	ENSACCG00020010773	ENSACCG00020010753	BCL2L15 (ENSACCG00020010737)	AP4B1 (ENSACCG00020010726)
Kakapo	MODERN SPECIES	30	ENSSHBG00005014478	GRM4 (ENSSHBG00005014485)	NUDT3 (ENSSHBG00005014490)	SMIM29 (ENSSHBG00005014502)	RPS10 (ENSSHBG00005014508)	PACSIN1 (ENSSHBG00005014517)	SPDEF (ENSSHBG00005014525)	ILRUN (ENSSHBG00005014536)	SNRPC (ENSSHBG00005014545)	ENSSHBG00005014557	ENSSHBG00005014571	INKA2 (ENSSHBG00005014581) #18	DDX20 (ENSSHBG00005014590) #19	KCND3 (ENSSHBG00005014608) #20	CTTNBP2NL (ENSSHBG00005014616) #21	WNT2B (ENSSHBG00005014626) #22	ST7L (ENSSHBG00005014637) #23	CAPZA1 (ENSSHBG00005014643) #24	MOV10 (ENSSHBG00005014656) #25	RHOC (ENSSHBG00005014686) #26	PPM1J (ENSSHBG00005014694) #27	TAFA3 (ENSSHBG00005014713) #28	SLC16A1 (ENSSHBG00005014725) #29	LRIG2 (ENSSHBG00005014732)	MAGI3 (ENSSHBG00005014772)	PHTF1 (ENSSHBG00005014943)	RSBN1 (ENSSHBG00005001001)	ENSSHBG00005001004	AP4B1 (ENSSHBG00005001005)	DCLRE1B (ENSSHBG00005005849)	HIPK1 (ENSSHBG00005005909)
Passeriformes	ANCESTRAL SPECIES	21	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00960000189479	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.n #16	ENSGT00940000160251 #17	ENSGT00940000164058	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496
Great tit	MODERN SPECIES	19	TRAF3IP3 (ENSPMJG00000017563)	C1orf74 (ENSPMJG00000017565)	IRF6 (ENSPMJG00000017566)	GUCA1B (ENSPMJG00000017568)	GUCA1A (ENSPMJG00000017569)	ENSPMJG00000017570	C6orf132 (ENSPMJG00000017571)	WDR77 (ENSPMJG00000017572) #12	ATP5PB (ENSPMJG00000017573) #13	ADORA3 (ENSPMJG00000017574) #16	RAP1A (ENSPMJG00000017575) #17	INKA2 (ENSPMJG00000017576) #18	DDX20 (ENSPMJG00000017577) #19	KCND3 (ENSPMJG00000017578) #20	CTTNBP2NL (ENSPMJG00000017580) #21	WNT2B (ENSPMJG00000017581) #22	ST7L (ENSPMJG00000017582) #23	CAPZA1 (ENSPMJG00000017583) #24	MOV10 (ENSPMJG00000017584) #25	RHOC (ENSPMJG00000017585) #26	PPM1J (ENSPMJG00000017589) #27	TAFA3 (ENSPMJG00000017591) #28	SLC16A1 (ENSPMJG00000017594) #29	LRIG2 (ENSPMJG00000017596)	MAGI3 (ENSPMJG00000017600)
Passeriformes_d	ANCESTRAL SPECIES	21	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00960000189479	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.n #16	ENSGT00940000164058	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496
Flycatcher	MODERN SPECIES	18	ENSFALG00000027139	ELK4 (ENSFALG00000000609)	MFSD4A (ENSFALG00000000613)	CDK18 (ENSFALG00000000616)	KLHDC8A (ENSFALG00000000617)	TMCC2 (ENSFALG00000000625)	WDR77 (ENSFALG00000000642) #12	DSTYK (ENSFALG00000000621)	ADORA3 (ENSFALG00000025248) #16	ENSFALG00000025619	ENSFALG00000024242	DDX20 (ENSFALG00000000666) #19	ENSFALG00000023135	KCND3 (ENSFALG00000000668) #20	CTTNBP2NL (ENSFALG00000000670) #21	WNT2B (ENSFALG00000000672) #22	ST7L (ENSFALG00000000682) #23	CAPZA1 (ENSFALG00000000695) #24	MOV10 (ENSFALG00000000722) #25	RHOC (ENSFALG00000026186) #26	PPM1J (ENSFALG00000000741) #27	TAFA3 (ENSFALG00000027415) #28	SLC16A1 (ENSFALG00000024820) #29	LRIG2 (ENSFALG00000000761)	MAGI3 (ENSFALG00000000766)
Passeriformes_g	ANCESTRAL SPECIES	24	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00960000189479	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.n #16	ENSGT00940000164058	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496
Medium ground finch	MODERN SPECIES	265			ENSGFOG00000012745	ENSGFOG00000012751	IRF6 (ENSGFOG00000012769)	GUCA1B (ENSGFOG00000012771)	GUCA1A (ENSGFOG00000012776)	WDR77 (ENSGFOG00000012780) #12	ATP5PB (ENSGFOG00000012785) #13	ADORA3 (ENSGFOG00000012791) #16	ENSGFOG00000012796	INKA2 (ENSGFOG00000012799) #18	DDX20 (ENSGFOG00000012801) #19	KCND3 (ENSGFOG00000012804) #20	CTTNBP2NL (ENSGFOG00000012807) #21	WNT2B (ENSGFOG00000012809) #22	ST7L (ENSGFOG00000012831) #23	CAPZA1 (ENSGFOG00000013340) #24	MOV10 (ENSGFOG00000013346) #25	RHOC (ENSGFOG00000013350) #26	PPM1J (ENSGFOG00000013355) #27	TAFA3 (ENSGFOG00000013365) #28	SLC16A1 (ENSGFOG00000013369) #29	LRIG2 (ENSGFOG00000013375)	MAGI3 (ENSGFOG00000013383)
Passeroidea	ANCESTRAL SPECIES	24	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00960000189479	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.n #16	ENSGT00940000164058	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000169090	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496
Common canary	MODERN SPECIES	62	HSD11B1 (ENSSCAG00000015616)	TRAF3IP3 (ENSSCAG00000015613)	IRF6 (ENSSCAG00000015608)	GUCA1B (ENSSCAG00000015605)	GUCA1A (ENSSCAG00000015601)	ENSSCAG00000015597	WDR77 (ENSSCAG00000015588) #12	ATP5PB (ENSSCAG00000015584) #13	ADORA3 (ENSSCAG00000015580) #16	ENSSCAG00000015574	INKA2 (ENSSCAG00000015572) #18	DDX20 (ENSSCAG00000015565) #19	ENSSCAG00000015561	KCND3 (ENSSCAG00000015558) #20	CTTNBP2NL (ENSSCAG00000015553) #21	WNT2B (ENSSCAG00000015547) #22	ST7L (ENSSCAG00000015539) #23	CAPZA1 (ENSSCAG00000015533) #24	MOV10 (ENSSCAG00000015526) #25	RHOC (ENSSCAG00000015520) #26	PPM1J (ENSSCAG00000015498) #27	TAFA3 (ENSSCAG00000015489) #28	SLC16A1 (ENSSCAG00000015486) #29	LRIG2 (ENSSCAG00000015466)	MAGI3 (ENSSCAG00000015302)
Zebra finch	MODERN SPECIES	19	ENSTGUG00000001496	ENSTGUG00000001493	ENSTGUG00000028430	ENSTGUG00000001485	ENSTGUG00000001480	ENSTGUG00000023336	ENSTGUG00000021654	ENSTGUG00000020910	ENSTGUG00000001465 #12	ENSTGUG00000001462 #13	RAP1A (ENSTGUG00000001456)	ENSTGUG00000023092 #18	ENSTGUG00000027469 #19	KCND3 (ENSTGUG00000013643) #20	CTTNBP2NL (ENSTGUG00000023106) #21	WNT2B (ENSTGUG00000017545) #22	ST7L (ENSTGUG00000017538) #23	CAPZA1 (ENSTGUG00000017536) #24	MOV10 (ENSTGUG00000017534) #25	ENSTGUG00000017533 ##26	PPM1J (ENSTGUG00000022043) #27	TAFA3 (ENSTGUG00000029508) #28	SLC16A1 (ENSTGUG00000017527) #29	LRIG2 (ENSTGUG00000017525)	MAGI3 (ENSTGUG00000017520)
Galloanserae	ANCESTRAL SPECIES	35	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.n #16	ENSGT01030000234555.a.a.b.a.b.a.m #16	ENSGT00940000164058	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Phasianidae	ANCESTRAL SPECIES	22	ENSGT00940000160260	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.n #16	ENSGT00940000164058	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Japanese quail	MODERN SPECIES	18	TRAF3IP3 (ENSCJPG00005016654)	C1orf74 (ENSCJPG00005016655)	IRF6 (ENSCJPG00005016656)	GUCA1B (ENSCJPG00005016657)	GUCA1A (ENSCJPG00005016658)	GUCA1ANB (ENSCJPG00005016659)	ENSCJPG00005016660	WDR77 (ENSCJPG00005016661) #12	ATP5PB (ENSCJPG00005016662) #13	ADORA3 (ENSCJPG00005016663) #16	ENSCJPG00005016664	INKA2 (ENSCJPG00005016665) #18	DDX20 (ENSCJPG00005016666) #19	KCND3 (ENSCJPG00005016667) #20	CTTNBP2NL (ENSCJPG00005016669) #21	WNT2B (ENSCJPG00005016670) #22	ST7L (ENSCJPG00005016671) #23	CAPZA1 (ENSCJPG00005016672) #24	MOV10 (ENSCJPG00005016673) #25	RHOC (ENSCJPG00005016674) #26	PPM1J (ENSCJPG00005016675) #27	TAFA3 (ENSCJPG00005016676) #28	SLC16A1 (ENSCJPG00005016677) #29	LRIG2 (ENSCJPG00005016678)	MAGI3 (ENSCJPG00005016688)	PHTF1 (ENSCJPG00005016848)	RSBN1 (ENSCJPG00005017322)	ENSCJPG00005017323	BCL2L15 (ENSCJPG00005017324)	AP4B1 (ENSCJPG00005017325)	DCLRE1B (ENSCJPG00005017326)
Phasianidae_b	ANCESTRAL SPECIES	22	ENSGT00940000160260	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.n #16	ENSGT00940000164058	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Chicken	MODERN SPECIES	18	TRAF3IP3 (ENSGALG00010027209)	C1orf74 (ENSGALG00010027743)	IRF6 (ENSGALG00010027212)	GUCA1B (ENSGALG00010027222)	GUCA1A (ENSGALG00010027535)	GUCA1ANB (ENSGALG00010027550)	C6orf132 (ENSGALG00010027557)	WDR77 (ENSGALG00010027563) #12	ATP5PB (ENSGALG00010027569) #13	ADORA3 (ENSGALG00010027577) #16	RAP1A (ENSGALG00010025245)	INKA2 (ENSGALG00010027271) #18	DDX20 (ENSGALG00010027272) #19	KCND3 (ENSGALG00010027277) #20	CTTNBP2NL (ENSGALG00010027284) #21	WNT2B (ENSGALG00010027417) #22	ST7L (ENSGALG00010027438) #23	CAPZA1 (ENSGALG00010027457) #24	MOV10 (ENSGALG00010027499) #25	RHOC (ENSGALG00010027510) #26	PPM1J (ENSGALG00010027516) #27	TAFA3 (ENSGALG00010027257) #28	SLC16A1 (ENSGALG00010024452) #29	ENSGALG00010027862	LRIG2 (ENSGALG00010027245)	MAGI3 (ENSGALG00010027252)	PHTF1 (ENSGALG00010027256)	RSBN1 (ENSGALG00010027894)	PTPN22 (ENSGALG00010027911)	BCL2L15 (ENSGALG00010027395)	AP4B1 (ENSGALG00010027402)
Turkey	MODERN SPECIES	20	HIPK1 (ENSMGAG00000005437)	DCLRE1B (ENSMGAG00000015672)	ENSMGAG00000005551	ENSMGAG00000005540	PTPN22 (ENSMGAG00000005570)	RSBN1 (ENSMGAG00000005145)	ENSMGAG00000005012	ENSMGAG00000005078	LRIG2 (ENSMGAG00000004738)	ENSMGAG00000005120 #29	ENSMGAG00000004999 #28	ENSMGAG00000004965 #27	RHOC (ENSMGAG00000004926) #26	CAPZA1 (ENSMGAG00000004831) #24	ENSMGAG00000004879 #25	WNT2B (ENSMGAG00000022187) #22	ENSMGAG00000004810 #23	CTTNBP2NL (ENSMGAG00000004774) #21	ENSMGAG00000004690 #20	ENSMGAG00000004624 #19	INKA2 (ENSMGAG00000004622) #18	RAP1A (ENSMGAG00000004577)	ENSMGAG00000004475	ENSMGAG00000004533 #13	ENSMGAG00000004569 #16	ENSMGAG00000017313	ENSMGAG00000004523 #12	ENSMGAG00000004503	ENSMGAG00000015669	IRF6 (ENSMGAG00000004431)	ENSMGAG00000004403
Anatidae	ANCESTRAL SPECIES	42	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00390000014226	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.n #16	ENSGT01030000234555.a.a.b.a.b.a.m #16	ENSGT00940000164058	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.e.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.b.a #26	ENSGT00940000160965 #27	ENSGT00940000155644 #28	ENSGT00940000154955 #29	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00390000018096	ENSGT00940000157025	ENSGT00940000158175
Pink-footed goose	MODERN SPECIES	129	C1orf74 (ENSABRG00000008712)	IRF6 (ENSABRG00000008706)	GUCA1B (ENSABRG00000008693)	GUCA1A (ENSABRG00000008685)	GUCA1ANB (ENSABRG00000008678)	C6orf132 (ENSABRG00000008666)	WDR77 (ENSABRG00000008653) #12	ATP5PB (ENSABRG00000008638) #13	ENSABRG00000008629 #16	ENSABRG00000008626 #16	ENSABRG00000008615	INKA2 (ENSABRG00000008604) #18	DDX20 (ENSABRG00000008596) #19	KCND3 (ENSABRG00000008587) #20	CTTNBP2NL (ENSABRG00000008563) #21	WNT2B (ENSABRG00000008544) #22	ST7L (ENSABRG00000008528) #23	CAPZA1 (ENSABRG00000007917) #24	MOV10 (ENSABRG00000007887) #25	RHOC (ENSABRG00000007834) #26	PPM1J (ENSABRG00000007816) #27	TAFA3 (ENSABRG00000007811) #28	ENSABRG00000007810
Duck	MODERN SPECIES	18	C1orf74 (ENSAPLG00000026419)	IRF6 (ENSAPLG00000009319)	GUCA1B (ENSAPLG00000028513)	GUCA1A (ENSAPLG00000031133)	GUCA1ANB (ENSAPLG00000001761)	C6orf132 (ENSAPLG00000017218)	WDR77 (ENSAPLG00000013403) #12	ATP5PB (ENSAPLG00000013428) #13	ENSAPLG00000013694 #16	ENSAPLG00000013695 #16	ENSAPLG00000013698	INKA2 (ENSAPLG00000013825) #18	DDX20 (ENSAPLG00000013826) #19	KCND3 (ENSAPLG00000013982) #20	CTTNBP2NL (ENSAPLG00000020349) #21	WNT2B (ENSAPLG00000014558) #22	ST7L (ENSAPLG00000014708) #23	CAPZA1 (ENSAPLG00000015264) #24	MOV10 (ENSAPLG00000015955) #25	ENSAPLG00000016291 ##26	TAFA3 (ENSAPLG00000016404) #28	SLC16A1 (ENSAPLG00000000583) #29	LRIG2 (ENSAPLG00000001904)	MAGI3 (ENSAPLG00000002599)	PHTF1 (ENSAPLG00000004512)	RSBN1 (ENSAPLG00000004887)	RAB29 (ENSAPLG00000004926)	NUCKS1 (ENSAPLG00000026584)	SLC45A3 (ENSAPLG00000005321)	ENSAPLG00000005477	LGR6 (ENSAPLG00000006712)
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	518	IRF6 (ENSSCUG00000007262)	GUCA1B (ENSSCUG00000007261)	GUCA1A (ENSSCUG00000007258)	GUCA1ANB (ENSSCUG00000007257)	C6orf132 (ENSSCUG00000007256)	WDR77 (ENSSCUG00000007255) #12	ATP5PB (ENSSCUG00000007252) #13	ADORA3 (ENSSCUG00000007250) #16	ENSSCUG00000007247	INKA2 (ENSSCUG00000007245) #18	DDX20 (ENSSCUG00000007240) #19	ENSSCUG00000007242	KCND3 (ENSSCUG00000007237) #20	CTTNBP2NL (ENSSCUG00000007230) #21	ENSSCUG00000007225 #22	WNT2B (ENSSCUG00000007222) #22	ST7L (ENSSCUG00000007216) #23	CAPZA1 (ENSSCUG00000007214) #24	PPM1J (ENSSCUG00000007209) #27	TAFA3 (ENSSCUG00000007201) #28	SLC16A1 (ENSSCUG00000007195) #29	LRIG2 (ENSSCUG00000007191)	MAGI3 (ENSSCUG00000007137)	PHTF1 (ENSSCUG00000007071)	RSBN1 (ENSSCUG00000007057)	PTPN22 (ENSSCUG00000007053)	AP4B1 (ENSSCUG00000007051)	HIPK1 (ENSSCUG00000007050)	SYT6 (ENSSCUG00000007041)	TRIM33 (ENSSCUG00000006993)	BCAS2 (ENSSCUG00000006961)
African ostrich	MODERN SPECIES	518	TRAF3IP3 (ENSSCUG00000007264)	IRF6 (ENSSCUG00000007262)	GUCA1B (ENSSCUG00000007261)	GUCA1A (ENSSCUG00000007258)	GUCA1ANB (ENSSCUG00000007257)	C6orf132 (ENSSCUG00000007256)	WDR77 (ENSSCUG00000007255) #12	ATP5PB (ENSSCUG00000007252) #13	ADORA3 (ENSSCUG00000007250) #16	ENSSCUG00000007247	INKA2 (ENSSCUG00000007245) #18	DDX20 (ENSSCUG00000007240) #19	ENSSCUG00000007242	KCND3 (ENSSCUG00000007237) #20	CTTNBP2NL (ENSSCUG00000007230) #21	ENSSCUG00000007225 #22	WNT2B (ENSSCUG00000007222) #22	ST7L (ENSSCUG00000007216) #23	CAPZA1 (ENSSCUG00000007214) #24	PPM1J (ENSSCUG00000007209) #27	TAFA3 (ENSSCUG00000007201) #28	SLC16A1 (ENSSCUG00000007195) #29	LRIG2 (ENSSCUG00000007191)	MAGI3 (ENSSCUG00000007137)	PHTF1 (ENSSCUG00000007071)	RSBN1 (ENSSCUG00000007057)	PTPN22 (ENSSCUG00000007053)	AP4B1 (ENSSCUG00000007051)	HIPK1 (ENSSCUG00000007050)	SYT6 (ENSSCUG00000007041)	TRIM33 (ENSSCUG00000006993)
Anura	ANCESTRAL SPECIES	68	ENSGT00940000160260	ENSGT00390000002240	ENSGT00940000157451	ENSGT00940000157530.a	ENSGT00940000160607	ENSGT00940000163431	ENSGT00390000010711 #12	ENSGT00390000001958 #13	ENSGT01030000234555.a.a.b.a.b.a.t #16	ENSGT01030000234555.a.a.b.a.b.a.s #16	ENSGT00940000164058	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343 #20	ENSGT00950000182852.B #21	ENSGT00940000159166 #22	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.f ##24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.b ##26	ENSGT00940000160965 #27	ENSGT00940000154955 #29	ENSGT00940000155644 #28	ENSGT00940000158791	ENSGT00940000156496	ENSGT00390000011648.b	ENSGT00390000001969.a	ENSGT00940000160958	ENSGT00940000157025	ENSGT00940000158175	ENSGT00940000155356
Frog	MODERN SPECIES	2	shroom2 (ENSXETG00000031194)	ENSXETG00000045111	gpr143 (ENSXETG00000015784)	tbl1x (ENSXETG00000015786)	adora3.1 (ENSXETG00000031634) #16	adora3.2 (ENSXETG00000025809) #16	adora3.3 (ENSXETG00000013556) #16	rap1a (ENSXETG00000013562)	ENSXETG00000042318	inka2 (ENSXETG00000013567) #18	ddx20 (ENSXETG00000013568) #19	kcnd3 (ENSXETG00000013577) #20	ENSXETG00000047250	cttnbp2nl (ENSXETG00000006909) #21	ENSXETG00000045727	wnt2b (ENSXETG00000006908) #22	ENSXETG00000044757	st7l (ENSXETG00000006902) #23	capza1 (ENSXETG00000025061) ##24	mov10 (ENSXETG00000006901) #25	rhoc (ENSXETG00000006898) ##26	ppm1j (ENSXETG00000017214)	slc16a1 (ENSXETG00000017213) #29	tafa3 (ENSXETG00000040547) #28	lrig2 (ENSXETG00000013203)	ENSXETG00000049038	ENSXETG00000039908	magi3 (ENSXETG00000013195)	rsbn1 (ENSXETG00000031729)	ptpn22 (ENSXETG00000046633)	ap4b1 (ENSXETG00000013187)
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000002686 #16	ENSLLEG00000002732	ENSLLEG00000002789 #16	ENSLLEG00000002833	INKA2 (ENSLLEG00000005571) #18	DDX20 (ENSLLEG00000005637) #19	KCND3 (ENSLLEG00000005672) #20	ENSLLEG00000005690	ENSLLEG00000005700	ENSLLEG00000005714	ENSLLEG00000005722	ENSLLEG00000005748	CTTNBP2NL (ENSLLEG00000005768) #21	ENSLLEG00000005832	ENSLLEG00000005866	WNT2B (ENSLLEG00000005914) #22	ENSLLEG00000006038	ST7L (ENSLLEG00000006082) #23	ENSLLEG00000006475	ENSLLEG00000006570 ##24	ENSLLEG00000007333	ENSLLEG00000007347	ENSLLEG00000007358	ENSLLEG00000007396 #25	ENSLLEG00000007634	ENSLLEG00000007664 #25	ENSLLEG00000007787	ENSLLEG00000007802	ENSLLEG00000007820 ##26	ENSLLEG00000007872	PPM1J (ENSLLEG00000007892) #27
Coelacanth	MODERN SPECIES	237	HSD11B1 (ENSLACG00000018614)	ENSLACG00000022582	TRAF3IP3 (ENSLACG00000018605)	C1orf74 (ENSLACG00000018603)	IRF6 (ENSLACG00000018600)	GUCA1B (ENSLACG00000018596)	WDR77 (ENSLACG00000018582) #12	ATP5PB (ENSLACG00000018579) #13	ENSLACG00000018576 #15	rap1ab (ENSLACG00000018518)	INKA2 (ENSLACG00000018507) #18	DDX20 (ENSLACG00000018491) #19	kcnd3 (ENSLACG00000018457) #20	kcnd3 (ENSLACG00000018405) #20	CTTNBP2NL (ENSLACG00000018169) #21	WNT2B (ENSLACG00000018074) #22	ST7L (ENSLACG00000017994) #23	CAPZA1 (ENSLACG00000017963) #24	MOV10 (ENSLACG00000017920) #25	ENSLACG00000017909 ##26	PPM1J (ENSLACG00000017833) #27	TAFA3 (ENSLACG00000017687) #28	ENSLACG00000017134	SLC16A1 (ENSLACG00000016978) #29	LRIG2 (ENSLACG00000016847)	MAGI3 (ENSLACG00000016389)	PHTF1 (ENSLACG00000016250)	RSBN1 (ENSLACG00000016161)	PTPN22 (ENSLACG00000016001)	DCLRE1B (ENSLACG00000015870)	AP4B1 (ENSLACG00000015784)
Actinopterygii	ANCESTRAL SPECIES	197	ENSGT00940000158083	ENSGT00940000157665	ENSGT00940000156361.B	ENSGT00390000014494	ENSGT00950000182931.B.a.b ##8	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00950000182839.B.a.b	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00940000165619	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343.a.a #20	ENSGT00940000159166 #22	ENSGT00940000155343.a.b #20	ENSGT00950000182852.B #21	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a #24	ENSGT00940000156024 #25
Neopterygii	ANCESTRAL SPECIES	226												ENSGT00940000165619	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343.a.a #20	ENSGT00940000159166 #22	ENSGT00940000155343.a.b #20	ENSGT00950000182852.B #21	ENSGT00940000166225	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a #24	ENSGT00940000156024 #25	ENSGT00950000182945.b.a.a.a.a ##26	ENSGT00940000166858	ENSGT00940000155644.a.b #28	ENSGT00940000154955 #29	ENSGT00940000157025
Osteoglossocephalai	ANCESTRAL SPECIES	62	ENSGT00940000160431	ENSGT00940000160784	ENSGT00940000154563	ENSGT00940000155199	ENSGT00950000182825.A.a.a	ENSGT00390000016889	ENSGT00940000157076.j	ENSGT00390000008224	ENSGT00730000111186	ENSGT00940000159825.a.b	ENSGT00390000017780.f	ENSGT00940000165619.b	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343.a.a #20	ENSGT00940000159166 #22	ENSGT00950000183119.a.b #24	ENSGT00940000155343.a.b #20	ENSGT00950000182852.B #21	ENSGT00940000166225	ENSGT00390000000873.a.a #23	ENSGT00950000183119.a.a #24	ENSGT00940000156024.i.b #25	ENSGT00950000182945.b.a.a.a.a ##26	ENSGT00940000166858	ENSGT00940000155644.a.b #28	ENSGT00940000154955 #29	ENSGT00390000003368	ENSGT00970000193609	ENSGT00940000165906	ENSGT00940000158152.a.a
Clupeocephala	ANCESTRAL SPECIES	653																ENSGT00940000159166 #22	ENSGT00940000156024.i.a #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26
Otomorpha	ANCESTRAL SPECIES	92	ENSGT00950000182931.A.a.b #8	ENSGT00390000012058.c.b	ENSGT00940000154171.A	ENSGT01030000234528.B.a.a.b.a	ENSGT01030000234528.B.a.a.a	ENSGT00940000153216.a.b	ENSGT00390000009278.b	ENSGT00940000154570.a.b	ENSGT00940000167828	ENSGT00940000160362	ENSGT00390000014577.b	ENSGT00390000004248	ENSGT00940000154955.b #29	ENSGT00950000182945.b.a.a.a.a.b.b ##26	ENSGT00940000156024.i.a #25	ENSGT00940000159166 #22	ENSGT00950000183119.a.b #24	ENSGT00950000182852.B.b #21	ENSGT00940000155343.a.a #20	ENSGT00940000158400 #19	ENSGT00530000063849.B #18	ENSGT00940000165619.b	ENSGT00390000017780.f	ENSGT00940000159825.a.b	ENSGT00730000111186	ENSGT00390000008224	ENSGT00940000157076.j.c	ENSGT00390000016889	ENSGT00940000160431	ENSGT00940000154102.a.h	ENSGT01050000244888.a.b
Clupeiformes	ANCESTRAL SPECIES	86	ENSGT01030000234528.B.a.a.b.a	ENSGT01030000234528.B.a.a.a	ENSGT00940000153216.a.b	ENSGT00390000009278.b	ENSGT00940000154570.a.b	ENSGT00940000167828	ENSGT00940000165157	ENSGT00940000154570.a.a	ENSGT00940000159410	ENSGT00940000160362	ENSGT00390000014577.b	ENSGT00390000004248	ENSGT00940000154955.b #29	ENSGT00950000182945.b.a.a.a.a.b.b ##26	ENSGT00940000156024.i.a #25	ENSGT00940000159166 #22	ENSGT00950000183119.a.b #24	ENSGT00950000182852.B.b #21	ENSGT00940000155343.a.a #20
Denticle herring	MODERN SPECIES	1	INKA2 (ENSDCDG00000028421) #18	ddx20 (ENSDCDG00000028401) #19	efhd2 (ENSDCDG00000028396)	ENSDCDG00000028393	ela2 (ENSDCDG00000028056)	ela2l (ENSDCDG00000027863)	tmem51a (ENSDCDG00000027817)	kazna (ENSDCDG00000027812)	ENSDCDG00000027803	ENSDCDG00000027785	rimkla (ENSDCDG00000027778)	slc16a1b (ENSDCDG00000027771) #29	TAFA3 (ENSDCDG00000027763) #28	rhocb (ENSDCDG00000027759) ##26	mov10b.1 (ENSDCDG00000027664) #25	wnt2bb (ENSDCDG00000027631) #22	capza1b (ENSDCDG00000027075) #24	cttnbp2nlb (ENSDCDG00000027049) #21	ENSDCDG00000027046	kcnd3 (ENSDCDG00000027039) #20	ENSDCDG00000027034	pfkfb2a (ENSDCDG00000026508)	GFUS (ENSDCDG00000024118)	chrna4b (ENSDCDG00000023975)	atp6ap1b (ENSDCDG00000023963)	GDI1 (ENSDCDG00000023631)	ITIH6 (ENSDCDG00000023158)	pfkfb1 (ENSDCDG00000022375)	ccn5 (ENSDCDG00000022338)	zgc:136971 (ENSDCDG00000022335)	ENSDCDG00000022321
Atlantic herring	MODERN SPECIES	20	fam219aa (ENSCHAG00000005359)	PRDM2 (ENSCHAG00000005397)	FOXJ3 (ENSCHAG00000005424)	rimkla (ENSCHAG00000005458)	zmynd12 (ENSCHAG00000005512)	slc16a1b (ENSCHAG00000005537) #29	ENSCHAG00000005566	ENSCHAG00000005596	ENSCHAG00000005602	ENSCHAG00000005615	ENSCHAG00000005621	TAFA3 (ENSCHAG00000005632) #28	ENSCHAG00000005641	ENSCHAG00000005660 ##26	mov10b.1 (ENSCHAG00000005748) #25	wnt2bb (ENSCHAG00000006681) #22	NEU3 (ENSCHAG00000006736)	ENSCHAG00000006746	ENSCHAG00000006783	NEU3 (ENSCHAG00000006769)	ENSCHAG00000006866	NEU3 (ENSCHAG00000006992)	NEU3 (ENSCHAG00000007041)	NEU3 (ENSCHAG00000007073)	capza1b (ENSCHAG00000007166) #24	cttnbp2nlb (ENSCHAG00000007944) #21	ENSCHAG00000007954	ENSCHAG00000007961	kcnd3 (ENSCHAG00000000783) #20	ENSCHAG00000000955	scube3 (ENSCHAG00000001573)
Otophysi	ANCESTRAL SPECIES	91							ENSGT00390000009278.b	ENSGT00940000154570.a.b	ENSGT00940000167828	ENSGT00390000014577.b	ENSGT00390000004248	ENSGT00940000154955.b #29	ENSGT00940000155644.a.a #28	ENSGT00950000182945.b.a.a.a.a.b.b ##26	ENSGT00940000156024.i.a #25	ENSGT00940000159166 #22	ENSGT00950000183119.a.b #24	ENSGT00950000182852.B.b #21	ENSGT00940000155343.a.a #20	ENSGT00940000158400 #19	ENSGT00530000063849.B #18	ENSGT00940000165619.b	ENSGT00940000158896	ENSGT00390000013828.i	ENSGT00390000017402	ENSGT00940000153314.b.a.b	ENSGT00940000159249.b	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553
Characiphysae	ANCESTRAL SPECIES	30	ENSGT00390000014553	ENSGT00940000162724	ENSGT00390000002421.b	ENSGT00940000153798.A.b.g	ENSGT00940000159249.b	ENSGT00940000153314.b.a.b	ENSGT00390000017402	ENSGT00390000013828.i	ENSGT00940000158896	ENSGT00940000165619.b	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343.a.a #20	ENSGT00950000182852.B.b #21	ENSGT00950000183119.a.b #24	ENSGT00940000159166 #22	ENSGT00940000156024.i.a #25	ENSGT00950000182945.b.a.a.a.a.b.b ##26	ENSGT00940000155644.a.a #28	ENSGT00940000154955.b #29	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT00940000153838.b	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546	ENSGT00510000047658
Channel catfish	MODERN SPECIES	24	ptpn1 (ENSIPUG00000005605)	Adipor1 (ENSIPUG00000005586)	klhl12 (ENSIPUG00000005510)	tuba5 (ENSIPUG00000005489)	kdm5bb (ENSIPUG00000005126)	LMOD1 (ENSIPUG00000005077)	ENSIPUG00000005064	ENSIPUG00000005049	ENSIPUG00000005040	rap1a (ENSIPUG00000004949)	fam212b (ENSIPUG00000004933) #18	ddx20 (ENSIPUG00000004876) #19	kcnd3 (ENSIPUG00000004845) #20	cttnbp2nl (ENSIPUG00000004840) #21	capza1b (ENSIPUG00000004811) #24	wnt2b (ENSIPUG00000004785) #22	mov10b.1 (ENSIPUG00000004768) #25	rhocb (ENSIPUG00000004722) ##26	tafa3b (ENSIPUG00000004707) #28	mmp9 (ENSIPUG00000004630)	mmp9 (ENSIPUG00000004597)	znf335 (ENSIPUG00000004567)	PGA4 (ENSIPUG00000004544)	ENSIPUG00000004526	pepa (ENSIPUG00000004486)	prok1 (ENSIPUG00000004469)	lamtor5 (ENSIPUG00000004452)	ENSIPUG00000004441	slc16a4 (ENSIPUG00000004419)	RBM15 (ENSIPUG00000004415)	ALX3 (ENSIPUG00000004410)
Characiphysae_b	ANCESTRAL SPECIES	34	ENSGT00940000158724.a	ENSGT00940000163565	ENSGT00390000014553	ENSGT00940000162724	ENSGT00390000002421.b	ENSGT00940000153798.A.b.g	ENSGT00940000159249.b	ENSGT00940000153314.b.a.b	ENSGT00390000017402	ENSGT00390000013828.i	ENSGT00940000158896	ENSGT00940000165619.b	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343.a.a #20	ENSGT00940000159166 #22	ENSGT00940000156024.i.a #25	ENSGT00950000182945.b.a.a.a.a.b.b ##26	ENSGT00940000155644.a.a #28	ENSGT00940000154955.b #29	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT00940000153838.b	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546	ENSGT00510000047658
Electric eel	MODERN SPECIES	50	clybl (ENSEEEG00000002195)	si:ch211-184m13.4 (ENSEEEG00000002194)	ptpn1 (ENSEEEG00000002193)	adipor1b (ENSEEEG00000002192)	KLHL12 (ENSEEEG00000002191)	tuba5 (ENSEEEG00000002190)	kdm5bb (ENSEEEG00000002166)	LMOD1 (ENSEEEG00000002163)	ENSEEEG00000002162	ENSEEEG00000002151	INKA2 (ENSEEEG00000002149) #18	ddx20 (ENSEEEG00000002137) #19	kcnd3 (ENSEEEG00000002134) #20	cttnbp2nlb (ENSEEEG00000002128) #21	capza1b (ENSEEEG00000002096) #24	wnt2bb (ENSEEEG00000002086) #22	mov10b.1 (ENSEEEG00000001881) #25	rhocb (ENSEEEG00000001855) ##26	tafa3b (ENSEEEG00000001854) #28	slc16a1b (ENSEEEG00000001852) #29	zmynd12 (ENSEEEG00000001849)	rimkla (ENSEEEG00000001846)	ENSEEEG00000001845	ENSEEEG00000001843	kazna (ENSEEEG00000001842)	tmem51a (ENSEEEG00000001839)	abl2 (ENSEEEG00000001837)	fnbp1l (ENSEEEG00000001813)	bcar3 (ENSEEEG00000001806)	paox1 (ENSEEEG00000001804)	zgc:171480 (ENSEEEG00000001802)
Characoidei	ANCESTRAL SPECIES	77	ENSGT00450000040404.a	ENSGT00940000155503.a	ENSGT00940000163979	ENSGT00940000158724.a	ENSGT00940000163565	ENSGT00940000162724	ENSGT00390000002421.b	ENSGT00940000153798.A.b.g	ENSGT00390000017402	ENSGT00390000013828.i	ENSGT00940000158896	ENSGT00940000165619.b	ENSGT00530000063849.B #18	ENSGT00940000158400 #19	ENSGT00940000155343.a.a #20	ENSGT00940000159166 #22	ENSGT00940000156024.i.a #25	ENSGT00950000182945.b.a.a.a.a.b.b ##26	ENSGT00940000155644.a.a #28	ENSGT00940000154955.b #29	ENSGT00390000004248	ENSGT00390000014577.b	ENSGT00940000167828	ENSGT00940000154570.a.b	ENSGT00390000009278.b	ENSGT00940000153838.b	ENSGT00950000183047.c.b	ENSGT00940000154130.a.a.b	ENSGT00940000165232	ENSGT00940000157546	ENSGT00510000047658
Red-bellied piranha	MODERN SPECIES	28	peds1 (ENSPNAG00000018533)	cebpb (ENSPNAG00000018508)	ptpn1 (ENSPNAG00000018498)	adipor1b (ENSPNAG00000018477)	KLHL12 (ENSPNAG00000018453)	tuba5 (ENSPNAG00000018411)	kdm5bb (ENSPNAG00000018385)	LMOD1 (ENSPNAG00000018254)	ENSPNAG00000018245	ENSPNAG00000018233	ENSPNAG00000018215	INKA2 (ENSPNAG00000018158) #18	ddx20 (ENSPNAG00000018148) #19	ENSPNAG00000018097 #20	ENSPNAG00000018073	wnt2bb (ENSPNAG00000017949) #22	MOV10 (ENSPNAG00000017939) #25	ENSPNAG00000017916 #25	rhocb (ENSPNAG00000017896) ##26	tafa3b (ENSPNAG00000017715) #28	slc16a1b (ENSPNAG00000017696) #29	zmynd12 (ENSPNAG00000017676)	rimkla (ENSPNAG00000017669)	ENSPNAG00000017649	kazna (ENSPNAG00000017625)	tmem51a (ENSPNAG00000005790)	abl2 (ENSPNAG00000017552)	fnbp1l (ENSPNAG00000003480)	bcar3 (ENSPNAG00000017382)	paox1 (ENSPNAG00000017334)	zgc:171480 (ENSPNAG00000017309)
Mexicana tetra	MODERN SPECIES	21	stap2b (ENSAMXG00000033465)	mpnd (ENSAMXG00000031702)	sh3gl1b (ENSAMXG00000033757)	rorca (ENSAMXG00000009363)	ENSAMXG00000042701	ENSAMXG00000034786	ENSAMXG00000038446	ENSAMXG00000041147	rap1aa (ENSAMXG00000033390)	INKA2 (ENSAMXG00000036052) #18	ddx20 (ENSAMXG00000040738) #19	kcnd3 (ENSAMXG00000035304) #20	ENSAMXG00000029698	cttnbp2nlb (ENSAMXG00000000044) #21	capza1b (ENSAMXG00000034501) #24	wnt2bb (ENSAMXG00000038011) #22	mov10b.1 (ENSAMXG00000000035) #25	rhocb (ENSAMXG00000000033) ##26	tafa3b (ENSAMXG00000033165) #28	ENSAMXG00000043705	nsfb (ENSAMXG00000019876)	ENSAMXG00000041001	ENSAMXG00000030776	ENSAMXG00000019946	NEURL4 (ENSAMXG00000019983)	ENSAMXG00000031200	ENSAMXG00000035481	POLR2A (ENSAMXG00000020046)	capgb (ENSAMXG00000031347)	ENSAMXG00000030948	ENSAMXG00000039749
Cyprinoidei	ANCESTRAL SPECIES	7	ENSGT00940000157524	ENSGT00390000013347.b	ENSGT00940000166103	ENSGT00940000157677	ENSGT00940000157756	ENSGT00390000009278.b	ENSGT00940000154570.a.b	ENSGT00940000167828	ENSGT00390000014577.b	ENSGT00390000004248	ENSGT00940000154955.b #29	ENSGT00940000155644.a.a #28	ENSGT00950000182945.b.a.a.a.a.b.b ##26	ENSGT00940000156024.i.a.d #25	ENSGT00940000156024.i.a.c #25	ENSGT00940000159166 #22	ENSGT00950000183119.a.b #24	ENSGT00950000182852.B.b #21	ENSGT00940000155343.a.a #20	ENSGT00940000158400 #19	ENSGT00530000063849.B #18	ENSGT00940000164058.i	ENSGT00940000165619.a	ENSGT01030000234963	ENSGT00940000159825.a.a	ENSGT00940000157076.j.d.a	ENSGT00950000182825.A.a.a	ENSGT00940000155199.f	ENSGT00940000158041	ENSGT00940000162137	ENSGT00940000163703.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	443												ENSGT00940000155644.a.a.a.b #28	ENSGT00950000182945.b.a.a.a.a.b.b.b ##26	ENSGT00940000156024.i.a.d.a #25	ENSGT00940000156024.i.a.c.a.a #25	ENSGT00940000159166.c #22	ENSGT00950000183119.a.b.a #24	ENSGT00950000182852.B.b.b #21	ENSGT00940000155343.a.a.d #20	ENSGT00940000158400.a #19	ENSGT00530000063849.B.c #18	ENSGT00940000165619.a	ENSGT01030000234963.g.a	ENSGT00940000159825.a.a	ENSGT00940000157076.j.d.a.b	ENSGT00950000182825.A.a.a.g	ENSGT00940000155199.f.b	ENSGT00940000154563.ib.a.a	ENSGT00940000158041.i	ENSGT00940000162137.h	ENSGT00940000163703.a.c
Cyprininae_a	ANCESTRAL SPECIES	226												ENSGT00940000155644.a.a.a.b #28	ENSGT00950000182945.b.a.a.a.a.b.b.b ##26	ENSGT00940000156024.i.a.d.a #25	ENSGT00940000156024.i.a.c.a.a #25	ENSGT00940000159166.c #22	ENSGT00950000183119.a.b.a #24	ENSGT00950000182852.B.b.b #21	ENSGT00940000155343.a.a.d #20	ENSGT00940000158400.a #19	ENSGT00530000063849.B.c #18	ENSGT00940000165619.a	ENSGT01030000234963.g.a	ENSGT00940000159825.a.a	ENSGT00940000157076.j.d.a.b	ENSGT00950000182825.A.a.a.g	ENSGT00940000155199.f.b	ENSGT00940000154563.ib.a.a	ENSGT00940000158041.i	ENSGT00940000162137.h	ENSGT00940000163703.a.c
Golden-line barbel	MODERN SPECIES	837												ENSSGRG00000042264	tafa3b (ENSSGRG00000042265) #28	rhocb (ENSSGRG00000042267) ##26	mov10b.1 (ENSSGRG00000042309) #25	wnt2bb (ENSSGRG00000042432) #22	capza1b (ENSSGRG00000042434) #24	cttnbp2nlb (ENSSGRG00000042465) #21
Common carp reference	MODERN SPECIES	23	zgc:136971 (ENSCCRG00000009374)	ENSCCRG00000076258	sema3bl (ENSCCRG00000002256)	sema3b (ENSCCRG00000047665)	ENSCCRG00000066785	kazna (ENSCCRG00000002005)	ENSCCRG00000049139	zmynd12 (ENSCCRG00000049171)	rimkla (ENSCCRG00000058880)	slc16a1b (ENSCCRG00000057843) #29	ENSCCRG00000057003	tafa3b (ENSCCRG00000060094) #28	rhocb (ENSCCRG00000055601) ##26	mov10b.2 (ENSCCRG00000044456) #25	mov10b.1 (ENSCCRG00000044361) #25	wnt2bb (ENSCCRG00000066457) #22	capza1b (ENSCCRG00000082703) #24	cttnbp2nlb (ENSCCRG00000065411) #21	kcnd3 (ENSCCRG00000077756) #20	ddx20 (ENSCCRG00000004492) #19	INKA2 (ENSCCRG00000065341) #18	ENSCCRG00000057383	ENSCCRG00000068665	ENSCCRG00000004480	kdm5bb (ENSCCRG00000004457)	tuba5 (ENSCCRG00000064801)	ENSCCRG00000010072	ENSCCRG00000082062	slc52a3 (ENSCCRG00000044878)	scrt2 (ENSCCRG00000066365)	ENSCCRG00000076967
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	48	sema3b (ENSCARG00000044055)	tmem51a (ENSCARG00000043970)	kazna (ENSCARG00000043854)	ENSCARG00000043815	rimkla (ENSCARG00000043775)	zmynd12 (ENSCARG00000043722)	slc16a1b (ENSCARG00000043697) #29	PREX1 (ENSCARG00000041849)	kcnq2a (ENSCARG00000041259)	dnase1l1l (ENSCARG00000040968)	vgll4l (ENSCARG00000040911)	slc20a1a (ENSCARG00000040879)	odf2b (ENSCARG00000040809)	mov10b.2 (ENSCARG00000039971) #25	mov10b.1 (ENSCARG00000038065) #25	wnt2bb (ENSCARG00000037964) #22	capza1b (ENSCARG00000036540) #24	cttnbp2nlb (ENSCARG00000036462) #21	kcnd3 (ENSCARG00000036422) #20	ddx20 (ENSCARG00000036303) #19	INKA2 (ENSCARG00000036280) #18	ENSCARG00000036265	ENSCARG00000036256	LMOD1 (ENSCARG00000036195)	kdm5bb (ENSCARG00000035316)	adra2b (ENSCARG00000035271)	dusp2 (ENSCARG00000035266)	NPC1L1 (ENSCARG00000034713)	gck (ENSCARG00000034445)	myl7 (ENSCARG00000034168)	TBC1D10A (ENSCARG00000011888)
Goldfish	MODERN SPECIES	48	impdh2 (ENSCARG00000015487)	arih2 (ENSCARG00000015281)	xpc (ENSCARG00000015114)	slc13a3 (ENSCARG00000014137)	mc3r (ENSCARG00000014097)	tcf15 (ENSCARG00000014092)	SRXN1 (ENSCARG00000014089)	scrt2 (ENSCARG00000014074)	slc52a3 (ENSCARG00000014067)	peds1 (ENSCARG00000014062)	cebpb (ENSCARG00000014054)	ptpn1 (ENSCARG00000014024)	tafa3b (ENSCARG00000014015) #28	rhocb (ENSCARG00000014002) ##26	mov10b.1 (ENSCARG00000013305) #25	wnt2bb (ENSCARG00000013251) #22	capza1b (ENSCARG00000013012) #24	cttnbp2nlb (ENSCARG00000012953) #21	kcnd3 (ENSCARG00000012941) #20	ddx20 (ENSCARG00000012907) #19	INKA2 (ENSCARG00000012899) #18	ENSCARG00000012872	ENSCARG00000012859	kdm5bb (ENSCARG00000012582)	tuba5 (ENSCARG00000012557)	KLHL12 (ENSCARG00000012520)	adipor1b (ENSCARG00000012502)	ptpn1 (ENSCARG00000012475)	cebpb (ENSCARG00000012466)	peds1 (ENSCARG00000012454)	scrt2 (ENSCARG00000012442)
Cyprininae	ANCESTRAL SPECIES	27	ENSGT00390000013347.b.k	ENSGT00940000166103.e.b	ENSGT00940000157677.h	ENSGT00940000157756.l	ENSGT00390000009278.b.b	ENSGT00940000154570.a.b.d	ENSGT00940000167828.a	ENSGT00390000014577.b.c	ENSGT00390000004248.e	ENSGT00940000154955.b.b #29	ENSGT00940000155644.a.a.a.a.a #28	ENSGT00940000155644.a.a.b #28	ENSGT00950000182945.b.a.a.a.a.b.b.a ##26	ENSGT00940000156024.i.a.d.b #25	ENSGT00940000156024.i.a.c.a.b #25	ENSGT00940000159166.d #22	ENSGT00950000183119.a.b.b #24	ENSGT00950000182852.B.b.a #21	ENSGT00940000155343.a.a.c #20	ENSGT00940000158400.b #19	ENSGT00530000063849.B.d #18	ENSGT00940000164058.i	ENSGT01030000234963.g.b	ENSGT00940000157076.j.d.a.a	ENSGT00950000182825.A.a.a.h	ENSGT00940000155199.f.a	ENSGT00940000154563.ib.a.b	ENSGT00940000158041.j	ENSGT00940000162137.g	ENSGT00940000163703.a.d	ENSGT00390000003774.a.b.f
Goldfish	MODERN SPECIES	2780															rhocb (ENSCARG00000057775) ##26	wnt2bb (ENSCARG00000057786) #22	capza1b (ENSCARG00000057824) #24	cttnbp2nlb (ENSCARG00000058147) #21	ENSCARG00000058180	kcnd3 (ENSCARG00000058190) #20	ddx20 (ENSCARG00000058210) #19	INKA2 (ENSCARG00000058234) #18	rap1aa (ENSCARG00000058240)	ENSCARG00000058286	ENSCARG00000058296	kdm5bb (ENSCARG00000058344)	tuba5 (ENSCARG00000061103)	KLHL12 (ENSCARG00000061161)	adipor1b (ENSCARG00000061192)	ptpn1 (ENSCARG00000061312)	cebpb (ENSCARG00000061377)
Cyprininae_a	ANCESTRAL SPECIES	45	ENSGT00940000157524.r	ENSGT00390000013347.b.k	ENSGT00940000166103.e.b	ENSGT00940000157677.h	ENSGT00940000157756.l	ENSGT00390000009278.b.b	ENSGT00940000154570.a.b.d	ENSGT00940000167828.a	ENSGT00390000014577.b.c	ENSGT00390000004248.e	ENSGT00940000154955.b.b #29	ENSGT00940000155644.a.a.b #28	ENSGT00950000182945.b.a.a.a.a.b.b.a ##26	ENSGT00940000156024.i.a.d.b #25	ENSGT00940000156024.i.a.c.a.b #25	ENSGT00940000159166.d #22	ENSGT00950000183119.a.b.b #24	ENSGT00950000182852.B.b.a #21	ENSGT00940000155343.a.a.c #20	ENSGT00940000158400.b #19	ENSGT00530000063849.B.d #18	ENSGT00940000164058.i	ENSGT01030000234963.g.b	ENSGT00940000157076.j.d.a.a	ENSGT00940000155199.f.a	ENSGT00940000154563.ib.a.b	ENSGT00940000158041.j	ENSGT00940000162137.g	ENSGT00940000163703.a.d	ENSGT00390000003774.a.b.f	ENSGT00940000154491.d.a.c
Common carp reference	MODERN SPECIES	17	ifrd2 (ENSCCRG00000002280)	zgc:136971 (ENSCCRG00000002266)	sema3bl (ENSCCRG00000049576)	sema3b (ENSCCRG00000002043)	ENSCCRG00000054920	tmem51a (ENSCCRG00000061686)	kazna (ENSCCRG00000013392)	ENSCCRG00000070464	rimkla (ENSCCRG00000082546)	zmynd12 (ENSCCRG00000049147)	slc16a1b (ENSCCRG00000062142) #29	tafa3b (ENSCCRG00000052791) #28	rhocb (ENSCCRG00000034344) ##26	mov10b.2 (ENSCCRG00000029171) #25	mov10b.1 (ENSCCRG00000045543) #25	wnt2bb (ENSCCRG00000044225) #22	capza1b (ENSCCRG00000044103) #24	cttnbp2nlb (ENSCCRG00000061834) #21	kcnd3 (ENSCCRG00000057442) #20	ddx20 (ENSCCRG00000042049) #19	INKA2 (ENSCCRG00000056453) #18	rap1aa (ENSCCRG00000055648)	kdm5bb (ENSCCRG00000001690)	ENSCCRG00000072172	ENSCCRG00000010044	ENSCCRG00000010050	ENSCCRG00000010059	cebpb (ENSCCRG00000077511)	peds1 (ENSCCRG00000069283)	slc52a3 (ENSCCRG00000028560)	scrt2 (ENSCCRG00000028559)
Golden-line barbel	MODERN SPECIES	145	amt (ENSSGRG00000030578)	ifrd2 (ENSSGRG00000030571)	sema3bl (ENSSGRG00000030559)	sema3b (ENSSGRG00000029793)	tmem51a (ENSSGRG00000029778)	ENSSGRG00000029777	kazna (ENSSGRG00000029776)	ENSSGRG00000029774	rimkla (ENSSGRG00000029773)	zmynd12 (ENSSGRG00000029772)	slc16a1b (ENSSGRG00000029771) #29	tafa3b (ENSSGRG00000029770) #28	rhocb (ENSSGRG00000029740) ##26	mov10b.2 (ENSSGRG00000029739) #25	mov10b.1 (ENSSGRG00000029161) #25	ENSSGRG00000029147 #22	capza1b (ENSSGRG00000028935) #24	cttnbp2nlb (ENSSGRG00000028923) #21
Zebrafish	MODERN SPECIES	23	zgc:136971 (ENSDARG00000055970)	sema3bl (ENSDARG00000007560)	sema3b (ENSDARG00000011672)	tmem51a (ENSDARG00000068575)	ENSDARG00000093606	kazna (ENSDARG00000076923)	si:ch211-156j16.1 (ENSDARG00000092035)	ENSDARG00000090721	rimkla (ENSDARG00000016830)	zmynd12 (ENSDARG00000017055)	slc16a1b (ENSDARG00000068572) #29	tafa3b (ENSDARG00000020292) #28	rhocb (ENSDARG00000018328) ##26	mov10b.2 (ENSDARG00000056065) #25	mov10b.1 (ENSDARG00000061177) #25	wnt2bb (ENSDARG00000032234) #22	capza1b (ENSDARG00000056090) #24	cttnbp2nlb (ENSDARG00000056091) #21	kcnd3 (ENSDARG00000056101) #20	ddx20 (ENSDARG00000061204) #19	ENSDARG00000109841	INKA2 (ENSDARG00000073900) #18	rap1aa (ENSDARG00000012553)	LMOD1 (ENSDARG00000056111)	kdm5bb (ENSDARG00000003098)	tuba5 (ENSDARG00000042708)	KLHL12 (ENSDARG00000112728)	adipor1b (ENSDARG00000042717)	klhl12 (ENSDARG00000100631)	ptpn1 (ENSDARG00000007923)	cebpb (ENSDARG00000042725)
Euteleosteomorpha	ANCESTRAL SPECIES	484																ENSGT00940000159166 #22	ENSGT00940000156024.i.a #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26
Acanthomorphata	ANCESTRAL SPECIES	3	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26
Euacanthomorphacea	ANCESTRAL SPECIES	2	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00980000201100	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00950000183123	ENSGT00940000158801	ENSGT00940000161892	ENSGT00990000208196	ENSGT00940000160794	ENSGT00940000161023.a
Percomorphaceae	ANCESTRAL SPECIES	7	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00980000201100	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00950000183123	ENSGT00940000158801	ENSGT00940000161892	ENSGT00990000208196	ENSGT00940000160794	ENSGT00940000161023.a
Percomorphaceae_B	ANCESTRAL SPECIES	6	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00980000201100	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000161892	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
Ovalentaria	ANCESTRAL SPECIES	6	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000161892	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
Ovalentaria_B	ANCESTRAL SPECIES	2	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b	ENSGT00940000161194
Pomacentridae	ANCESTRAL SPECIES	2	ENSGT01030000234555.a.a.b.a.b.a.d #16	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b	ENSGT00940000161194
Pomacentridae_A	ANCESTRAL SPECIES	12	ENSGT01030000234555.a.a.b.a.b.a.d #16	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b	ENSGT00940000161194
Amphiprion	ANCESTRAL SPECIES	22	ENSGT01030000234555.a.a.b.a.b.a.d #16	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00390000013158.d	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000159254.b	ENSGT00940000161194
Clown anemonefish	MODERN SPECIES	1963													ccdc115 (ENSAOCG00000006814)	ebp (ENSAOCG00000006829)	ENSAOCG00000006835	WNT2B (ENSAOCG00000006861) #22	mov10b.1 (ENSAOCG00000006885) #25	ENSAOCG00000002474 ##26	tafa3b (ENSAOCG00000006920) #28	ENSAOCG00000006935
Orange clownfish	MODERN SPECIES	22	TEAD3 (ENSAPEG00000005038)	ENSAPEG00000005020	tnnt2a (ENSAPEG00000004959)	lad1 (ENSAPEG00000004917)	ENSAPEG00000004889	ENSAPEG00000004837	phlda3 (ENSAPEG00000004819)	csrp1a (ENSAPEG00000004787)	ENSAPEG00000004749	mybpha (ENSAPEG00000004604)	ENSAPEG00000004570	apobec2b (ENSAPEG00000004591)	ccdc115 (ENSAPEG00000004554)	ebp (ENSAPEG00000004537)	ENSAPEG00000004529	WNT2B (ENSAPEG00000004514) #22	mov10b.1 (ENSAPEG00000004492) #25	ENSAPEG00000004482 ##26	tafa3b (ENSAPEG00000004440) #28	mrpl41 (ENSAPEG00000004381)	zgc:174906 (ENSAPEG00000004364)	csad (ENSAPEG00000004314)	znf740b (ENSAPEG00000004261)	copz1 (ENSAPEG00000004212)	nfe2 (ENSAPEG00000004195)	ENSAPEG00000004179	cbx5 (ENSAPEG00000004148)	ENSAPEG00000004127	ENSAPEG00000004115	hoxc4a (ENSAPEG00000004109)	hoxc6a (ENSAPEG00000004077)
Spiny chromis	MODERN SPECIES	584																WNT2B (ENSAPOG00000003045) #22	mov10b.1 (ENSAPOG00000003017) #25	ENSAPOG00000002943 ##26	tafa3b (ENSAPOG00000000061) #28
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	2282											ENSSPAG00000005201	apobec2b (ENSSPAG00000005253)	ccdc115 (ENSSPAG00000005271)	ebp (ENSSPAG00000005295)	ENSSPAG00000005303	WNT2B (ENSSPAG00000005315) #22
Bicolor damselfish	MODERN SPECIES	712																WNT2B (ENSSPAG00000018309) #22	mov10b.1 (ENSSPAG00000018366) #25	ENSSPAG00000018396 ##26	tafa3b (ENSSPAG00000018408) #28	zgc:174906 (ENSSPAG00000018423)	csad (ENSSPAG00000018434)	znf740b (ENSSPAG00000018479)	copz1 (ENSSPAG00000018487)	nfe2 (ENSSPAG00000018508)	ENSSPAG00000018518	cbx5 (ENSSPAG00000018533)
Cichlidae	ANCESTRAL SPECIES		ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b	ENSGT00940000161194
Pseudocrenilabrinae	ANCESTRAL SPECIES	5	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b	ENSGT00940000161194
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	17	ENSGT01030000234555.a.a.b.a.b.a.d #16	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b	ENSGT00940000161194
Haplochromini	ANCESTRAL SPECIES	18	ENSGT01030000234555.a.a.b.a.b.a.d #16	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b	ENSGT00940000161194
Burton s mouthbrooder	MODERN SPECIES	277	LGR6 (ENSHBUG00000006576)	ENSHBUG00000006548	ENSHBUG00000006534 #16	TEAD3 (ENSHBUG00000006501)	PKP1 (ENSHBUG00000006214)	tnnt2a (ENSHBUG00000006203)	ENSHBUG00000000151	phlda3 (ENSHBUG00000006149)	csrp1a (ENSHBUG00000006143)	NAV1 (ENSHBUG00000006096)	mybpha (ENSHBUG00000006003)	apobec2b (ENSHBUG00000005993)	ccdc115 (ENSHBUG00000005990)	ebp (ENSHBUG00000005979)	ENSHBUG00000005952	WNT2B (ENSHBUG00000005937) #22	mov10b.1 (ENSHBUG00000005915) #25	ENSHBUG00000005847 ##26	tafa3b (ENSHBUG00000000145) #28	zgc:174906 (ENSHBUG00000005800)	csad (ENSHBUG00000005789)	znf740b (ENSHBUG00000005736)	copz1 (ENSHBUG00000005700)	nfe2 (ENSHBUG00000005667)	hnrnpa1a (ENSHBUG00000005647)	cbx5 (ENSHBUG00000005637)	ENSHBUG00000005630	ENSHBUG00000005626	hoxc4a (ENSHBUG00000005600)	hoxc5a (ENSHBUG00000005594)	hoxc6a (ENSHBUG00000005591)
Haplochromini_A	ANCESTRAL SPECIES	22	ENSGT01030000234555.a.a.b.a.b.a.d #16	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00950000183123	ENSGT00940000158801	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b	ENSGT00940000161194
Haplochromini_B	ANCESTRAL SPECIES	19	ENSGT01030000234555.a.a.b.a.b.a.d #16	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000162700.f	ENSGT00940000156616.j	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b	ENSGT00940000161194
Zebra mbuna	MODERN SPECIES	1103	ENSMZEG00005027146	ENSMZEG00005027147 #16	TEAD3 (ENSMZEG00005027150)	PKP1 (ENSMZEG00005027151)	tnnt2a (ENSMZEG00005027152)	ENSMZEG00005027153	phlda3 (ENSMZEG00005027154)	csrp1a (ENSMZEG00005027155)	NAV1 (ENSMZEG00005027156)	mybpha (ENSMZEG00005027157)	ENSMZEG00005027158	apobec2b (ENSMZEG00005027159)	ccdc115 (ENSMZEG00005027160)	ebp (ENSMZEG00005027161)	ENSMZEG00005027162	WNT2B (ENSMZEG00005027163) #22	ENSMZEG00005027164 #25	ENSMZEG00005027165 ##26	tafa3b (ENSMZEG00005027166) #28	zgc:174906 (ENSMZEG00005027168)	csad (ENSMZEG00005027169)	znf740b (ENSMZEG00005027170)	copz1 (ENSMZEG00005027171)	nfe2 (ENSMZEG00005027172)	hnrnpa1a (ENSMZEG00005027173)	cbx5 (ENSMZEG00005027174)	ENSMZEG00005027175	ENSMZEG00005027176	hoxc4a (ENSMZEG00005027177)	hoxc5a (ENSMZEG00005027179)	hoxc6a (ENSMZEG00005027180)
Eastern happy	MODERN SPECIES	12	ENSACLG00000008241 #16	TEAD3 (ENSACLG00000008230)	PKP1 (ENSACLG00000008220)	tnnt2a (ENSACLG00000008198)	lad1 (ENSACLG00000008186)	ENSACLG00000008177	phlda3 (ENSACLG00000008171)	csrp1a (ENSACLG00000008160)	NAV1 (ENSACLG00000007688)	mybpha (ENSACLG00000007672)	ENSACLG00000007648	apobec2b (ENSACLG00000007634)	ccdc115 (ENSACLG00000007624)	ebp (ENSACLG00000007614)	ENSACLG00000007606	WNT2B (ENSACLG00000007593) #22	mov10b.1 (ENSACLG00000007569) #25	ENSACLG00000007550 ##26	tafa3b (ENSACLG00000007244) #28	zgc:174906 (ENSACLG00000007046)	csad (ENSACLG00000007024)	znf740b (ENSACLG00000007002)	copz1 (ENSACLG00000006973)	nfe2 (ENSACLG00000006956)	ENSACLG00000006940	cbx5 (ENSACLG00000006933)	ENSACLG00000006928	ENSACLG00000006920	hoxc4a (ENSACLG00000006907)	hoxc5a (ENSACLG00000006894)	hoxc6a (ENSACLG00000006891)
P. nyererei	MODERN SPECIES	342	LGR6 (ENSPNYG00000016209)	ENSPNYG00000016259 #16	TEAD3 (ENSPNYG00000016344)	PKP1 (ENSPNYG00000016498)	tnnt2a (ENSPNYG00000016519)	ENSPNYG00000016551	phlda3 (ENSPNYG00000016646)	csrp1a (ENSPNYG00000016657)	NAV1 (ENSPNYG00000016685)	mybpha (ENSPNYG00000016722)	ENSPNYG00000016739	apobec2b (ENSPNYG00000016747)	ccdc115 (ENSPNYG00000016756)	ebp (ENSPNYG00000016762)	ENSPNYG00000016778	WNT2B (ENSPNYG00000016787) #22	mov10b.1 (ENSPNYG00000016801) #25	ENSPNYG00000016821 ##26	tafa3b (ENSPNYG00000016834) #28	zgc:174906 (ENSPNYG00000016872)	csad (ENSPNYG00000016884)	znf740b (ENSPNYG00000016926)	copz1 (ENSPNYG00000016962)	nfe2 (ENSPNYG00000016999)	hnrnpa1b (ENSPNYG00000017019)	cbx5 (ENSPNYG00000017069)	ENSPNYG00000017101	hoxc4a (ENSPNYG00000017144)	hoxc5a (ENSPNYG00000017276)	hoxc6a (ENSPNYG00000017285)	hoxc8a (ENSPNYG00000017294)
Nile tilapia	MODERN SPECIES	12	ENSONIG00000012328 #16	TEAD3 (ENSONIG00000012323)	PKP1 (ENSONIG00000012321)	tnnt2a (ENSONIG00000012310)	TNNI1 (ENSONIG00000012306)	phlda3 (ENSONIG00000020541)	csrp1a (ENSONIG00000012304)	NAV1 (ENSONIG00000012297)	mybpha (ENSONIG00000012294)	ENSONIG00000012291	apobec2b (ENSONIG00000012289)	ENSONIG00000038500	ccdc115 (ENSONIG00000034538)	ebp (ENSONIG00000012285)	ENSONIG00000012284	WNT2B (ENSONIG00000003906) #22	mov10b.1 (ENSONIG00000012274) #25	ENSONIG00000012272 ##26	tafa3b (ENSONIG00000036941) #28	zgc:174906 (ENSONIG00000012269)	csad (ENSONIG00000012260)	znf740b (ENSONIG00000012259)	copz1 (ENSONIG00000012255)	nfe2 (ENSONIG00000032018)	hnrnpa1a (ENSONIG00000012248)	cbx5 (ENSONIG00000012244)	ENSONIG00000038042	ENSONIG00000012243	hoxc4a (ENSONIG00000012242)	hoxc5a (ENSONIG00000012241)	hoxc6a (ENSONIG00000012240)
Midas cichlid	MODERN SPECIES	124									NAV1 (ENSACIG00000002674)	mybpha (ENSACIG00000002535)	ENSACIG00000002496	apobec2b (ENSACIG00000002472)	ENSACIG00000002455	ebp (ENSACIG00000002444)	ENSACIG00000002433	WNT2B (ENSACIG00000002416) #22	ENSACIG00000002408
Atherinomorphae	ANCESTRAL SPECIES	3	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000159503	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
Cyprinodontiformes	ANCESTRAL SPECIES	4	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b.d	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00950000183123	ENSGT00940000158801	ENSGT00940000159503	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
Cyprinodontoidei	ANCESTRAL SPECIES	3	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b.d	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00950000183123	ENSGT00940000158801	ENSGT00940000159503	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
NAME_4	ANCESTRAL SPECIES	4	ENSGT00940000155067.b.b	ENSGT01030000234555.a.a.b.a.b.a.d #16	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00950000183123	ENSGT00940000158801	ENSGT00940000161892	ENSGT00940000159503	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a
Mummichog	MODERN SPECIES	252	ENSFHEG00000005872 #16	TEAD3 (ENSFHEG00000005865)	PKP1 (ENSFHEG00000005831)	tnnt2a (ENSFHEG00000005802)	ENSFHEG00000005670	phlda3 (ENSFHEG00000005663)	csrp1a (ENSFHEG00000005645)	NAV1 (ENSFHEG00000005605)	mybpha (ENSFHEG00000005550)	ENSFHEG00000005523	apobec2b (ENSFHEG00000005492)	ccdc115 (ENSFHEG00000005475)	ebp (ENSFHEG00000005469)	ENSFHEG00000005462	ENSFHEG00000005457	WNT2B (ENSFHEG00000005451) #22	ENSFHEG00000005435 #25	ENSFHEG00000005425	ENSFHEG00000005408 ##26
Sheepshead minnow	MODERN SPECIES	128										ENSCVAG00000012291	ENSCVAG00000012330	apobec2b (ENSCVAG00000012342)	ccdc115 (ENSCVAG00000012349)	ebp (ENSCVAG00000012358)	ENSCVAG00000012366	WNT2B (ENSCVAG00000012381) #22	ENSCVAG00000012443 #25	ENSCVAG00000012459 ##26	tafa3b (ENSCVAG00000012476) #28	zgc:174906 (ENSCVAG00000012488)	csad (ENSCVAG00000012522)	znf740b (ENSCVAG00000012538)	copz1 (ENSCVAG00000012605)	nfe2 (ENSCVAG00000012645)	hnrnpa1a (ENSCVAG00000012637)	cbx5 (ENSCVAG00000012677)	ENSCVAG00000012686	ENSCVAG00000012701	hoxc4a (ENSCVAG00000012708)	hoxc5a (ENSCVAG00000012711)	hoxc6a (ENSCVAG00000012714)
Poeciliinae	ANCESTRAL SPECIES	2	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b.d	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00950000183123	ENSGT00940000158801	ENSGT00940000159503	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
Poecilia	ANCESTRAL SPECIES	14	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b.d	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00950000183123	ENSGT00940000158801	ENSGT00940000159503	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
NAME_6	ANCESTRAL SPECIES	125	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b.d	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26
Amazon molly	MODERN SPECIES	482	TEAD3 (ENSPFOG00000003170)	PKP1 (ENSPFOG00000003088)	tnnt2a (ENSPFOG00000002884)	lad1 (ENSPFOG00000002836)	ENSPFOG00000002725	phlda3 (ENSPFOG00000020125)	csrp1a (ENSPFOG00000002623)	NAV1 (ENSPFOG00000001749)	mybpha (ENSPFOG00000001283)	ENSPFOG00000022284	apobec2b (ENSPFOG00000001216)	ENSPFOG00000001195	ccdc115 (ENSPFOG00000001163)	ebp (ENSPFOG00000001148)	ENSPFOG00000001126	WNT2B (ENSPFOG00000001031) #22	ENSPFOG00000000853 #25	ENSPFOG00000000709 ##26
Sailfin molly	MODERN SPECIES	199	LGR6 (ENSPLAG00000001836)	ENSPLAG00000001847	TEAD3 (ENSPLAG00000001870)	ENSPLAG00000001884	tnnt2a (ENSPLAG00000001896)	ENSPLAG00000001914	phlda3 (ENSPLAG00000001921)	csrp1a (ENSPLAG00000001930)	NAV1 (ENSPLAG00000001948)	mybpha (ENSPLAG00000002030)	ENSPLAG00000002061	apobec2b (ENSPLAG00000002074)	ccdc115 (ENSPLAG00000002084)	ebp (ENSPLAG00000002090)	ENSPLAG00000002092	WNT2B (ENSPLAG00000002097) #22
Guppy	MODERN SPECIES	459	ENSPREG00000019827 #16	ENSPREG00000019834 #16	TEAD3 (ENSPREG00000019842)	PKP1 (ENSPREG00000019858)	tnnt2a (ENSPREG00000019877)	ENSPREG00000019893	phlda3 (ENSPREG00000019915)	csrp1a (ENSPREG00000019919)	NAV1 (ENSPREG00000019950)	mybpha (ENSPREG00000020009)	ENSPREG00000020034	apobec2b (ENSPREG00000020060)	ccdc115 (ENSPREG00000020064)	ebp (ENSPREG00000020071)	ENSPREG00000020087	wnt2bb (ENSPREG00000020095) #22	mov10b.1 (ENSPREG00000020106) #25	ENSPREG00000020122 ##26	tafa3b (ENSPREG00000020139) #28	zgc:174906 (ENSPREG00000020167)	csad (ENSPREG00000020183)	znf740b (ENSPREG00000020222)	copz1 (ENSPREG00000020241)	nfe2 (ENSPREG00000020275)	ENSPREG00000020284	cbx5 (ENSPREG00000020291)	ENSPREG00000020298	ENSPREG00000020306	hoxc4a (ENSPREG00000020332)	hoxc5a (ENSPREG00000020334)	hoxc6a (ENSPREG00000020340)
Platyfish	MODERN SPECIES		ENSXMAG00000008205	ADORA3 (ENSXMAG00000022918) #16	TEAD3 (ENSXMAG00000008189)	PKP1 (ENSXMAG00000008184)	tnnt2a (ENSXMAG00000008178)	ENSXMAG00000008174	phlda3 (ENSXMAG00000019456)	csrp1a (ENSXMAG00000008165)	NAV1 (ENSXMAG00000008152)	mybpha (ENSXMAG00000008144)	ENSXMAG00000008141	apobec2b (ENSXMAG00000008134)	ccdc115 (ENSXMAG00000008131)	ebp (ENSXMAG00000008130)	ENSXMAG00000008129	wnt2bb (ENSXMAG00000008113) #22	mov10b.1 (ENSXMAG00000024782) #25	ENSXMAG00000019368 ##26	tafa3b (ENSXMAG00000021478) #28	ENSXMAG00000025267	ENSXMAG00000028022	zgc:174906 (ENSXMAG00000027144)	csad (ENSXMAG00000008102)	znf740b (ENSXMAG00000026779)	copz1 (ENSXMAG00000008084)	nfe2 (ENSXMAG00000008083)	ENSXMAG00000008076	cbx5 (ENSXMAG00000023539)	ENSXMAG00000028346	ENSXMAG00000025199	hoxc4a (ENSXMAG00000023829)
Aplocheiloidei	ANCESTRAL SPECIES		ENSGT01030000234555.a.a.b.a.b.a.d #16	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b.d	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000161892	ENSGT00940000181054	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
Mangrove rivulus	MODERN SPECIES	32	LGR6 (ENSKMAG00000020288)	ENSKMAG00000020307	TEAD3 (ENSKMAG00000020323)	PKP1 (ENSKMAG00000020344)	tnnt2a (ENSKMAG00000020366)	ENSKMAG00000020388	phlda3 (ENSKMAG00000020415)	csrp1a (ENSKMAG00000020434)	NAV1 (ENSKMAG00000020493)	mybpha (ENSKMAG00000020591)	ENSKMAG00000020605	apobec2b (ENSKMAG00000020631)	ENSKMAG00000020637	ENSKMAG00000020646	ebp (ENSKMAG00000020660)	WNT2B (ENSKMAG00000020684) #22	MOV10 (ENSKMAG00000020712) #25	ENSKMAG00000020750 ##26	tafa3b (ENSKMAG00000020773) #28	zgc:174906 (ENSKMAG00000020786)	csad (ENSKMAG00000020806)	znf740b (ENSKMAG00000020829)	copz1 (ENSKMAG00000020838)	nfe2 (ENSKMAG00000020850)	ENSKMAG00000020859	cbx5 (ENSKMAG00000020876)	ENSKMAG00000020886	ENSKMAG00000020893	hoxc4a (ENSKMAG00000020900)	hoxc5a (ENSKMAG00000020907)	hoxc6a (ENSKMAG00000020914)
Oryzias	ANCESTRAL SPECIES	4	ENSGT00940000155067.b.b	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b	ENSGT00940000161194
Oryzias_b	ANCESTRAL SPECIES	2	ENSGT00940000155067.b.b	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b	ENSGT00940000161194
Indian medaka	MODERN SPECIES	23	ENSOMEG00000014822	TEAD3 (ENSOMEG00000014856)	PKP1 (ENSOMEG00000014881)	tnnt2a (ENSOMEG00000014969)	ENSOMEG00000015033	phlda3 (ENSOMEG00000015044)	csrp1a (ENSOMEG00000015070)	NAV1 (ENSOMEG00000015259)	mybpha (ENSOMEG00000015334)	ENSOMEG00000015404	apobec2b (ENSOMEG00000015449)	ENSOMEG00000015467	ccdc115 (ENSOMEG00000015493)	ebp (ENSOMEG00000015512)	ENSOMEG00000015530	wnt2bb (ENSOMEG00000015549) #22	mov10b.1 (ENSOMEG00000015634) #25	ENSOMEG00000015673 ##26	tafa3b (ENSOMEG00000015707) #28	ENSOMEG00000015724	zgc:174906 (ENSOMEG00000015741)	csad (ENSOMEG00000015776)	znf740b (ENSOMEG00000015794)	copz1 (ENSOMEG00000015889)	nfe2 (ENSOMEG00000015930)	ENSOMEG00000015959	cbx5 (ENSOMEG00000015980)	ENSOMEG00000015989	hoxc4a (ENSOMEG00000000401)	hoxc8a (ENSOMEG00000016004)	hoxc9a (ENSOMEG00000016027)
Javanese ricefish	MODERN SPECIES	21	ENSOJAG00000019690	TEAD3 (ENSOJAG00000019600)	PKP1 (ENSOJAG00000019589)	tnnt2a (ENSOJAG00000019525)	ENSOJAG00000019449	phlda3 (ENSOJAG00000019415)	csrp1a (ENSOJAG00000019379)	NAV1 (ENSOJAG00000019010)	mybpha (ENSOJAG00000018941)	ENSOJAG00000018929	apobec2b (ENSOJAG00000018922)	ENSOJAG00000018909	ENSOJAG00000018899	ccdc115 (ENSOJAG00000018893)	ebp (ENSOJAG00000018874)	wnt2bb (ENSOJAG00000018835) #22	ENSOJAG00000018819	mov10b.1 (ENSOJAG00000018636) #25	ENSOJAG00000018604 ##26	tafa3b (ENSOJAG00000018597) #28	zgc:174906 (ENSOJAG00000018580)	ENSOJAG00000018526	ENSOJAG00000018506	znf740b (ENSOJAG00000018499)	copz1 (ENSOJAG00000018310)	nfe2 (ENSOJAG00000018288)	ENSOJAG00000018266	cbx5 (ENSOJAG00000018252)	ENSOJAG00000018244	hoxc4a (ENSOJAG00000018235)	hoxc5a (ENSOJAG00000018230)
Oryzias_a	ANCESTRAL SPECIES		ENSGT00940000159939	ENSGT00940000155067.b.b	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b	ENSGT00940000161194
Japanese Medaka HdrR	MODERN SPECIES	21	lgr6 (ENSORLG00000008434)	ENSORLG00000008369	ENSORLG00000008361	PKP1 (ENSORLG00000008336)	tnnt2a (ENSORLG00000024544)	ENSORLG00000008327	phlda3 (ENSORLG00000026910)	csrp1a (ENSORLG00000022573)	NAV1 (ENSORLG00000008252)	mybpha (ENSORLG00000008186)	ENSORLG00000023824	apobec2b (ENSORLG00000022372)	ccdc115 (ENSORLG00000008147)	ebp (ENSORLG00000008139)	ENSORLG00000008134	wnt2bb (ENSORLG00000008125) #22	ENSORLG00000008101 #25	rhocb (ENSORLG00000002742) ##26	tafa3b (ENSORLG00000008062) #28	zgc:174906 (ENSORLG00000024306)	csad (ENSORLG00000008058)	znf740b (ENSORLG00000008031)	copz1 (ENSORLG00000008024)	nfe2 (ENSORLG00000024998)	ENSORLG00000008001	cbx5 (ENSORLG00000023199)	ENSORLG00000027670	hoxc4a (ENSORLG00000007955)	hoxc5a (ENSORLG00000007942)	hoxc6a (ENSORLG00000025750)	hoxc8a (ENSORLG00000024149)
Chinese medaka	MODERN SPECIES	1092	zgc:194242 (ENSOSIG00000008645)	ube2t (ENSOSIG00000008646)	LGR6 (ENSOSIG00000008648)	ENSOSIG00000008652	TEAD3 (ENSOSIG00000008655)	PKP1 (ENSOSIG00000008685)	tnnt2a (ENSOSIG00000008689)	phlda3 (ENSOSIG00000008694)	csrp1a (ENSOSIG00000008696)	NAV1 (ENSOSIG00000008702)	ENSOSIG00000009886	apobec2b (ENSOSIG00000009888)	ccdc115 (ENSOSIG00000009892)	ebp (ENSOSIG00000009895)	ENSOSIG00000009897	wnt2bb (ENSOSIG00000009898) #22	MOV10 (ENSOSIG00000009903) #25	ENSOSIG00000009905 ##26	tafa3b (ENSOSIG00000009907) #28	zgc:174906 (ENSOSIG00000009909)	csad (ENSOSIG00000009929)	znf740b (ENSOSIG00000010656)	copz1 (ENSOSIG00000010659)	nfe2 (ENSOSIG00000010820)	ENSOSIG00000010821	cbx5 (ENSOSIG00000010823)	ENSOSIG00000010824	hoxc4a (ENSOSIG00000010826)	hoxc5a (ENSOSIG00000010828)	hoxc6a (ENSOSIG00000010829)	hoxc8a (ENSOSIG00000010831)
Percomorphaceae_C	ANCESTRAL SPECIES	4	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00980000201100	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000161892	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
Eupercaria	ANCESTRAL SPECIES	4	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00980000201100	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000161892	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a
Tetraodontidae	ANCESTRAL SPECIES	2	ENSGT00940000155067.b.b	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00950000183123	ENSGT00940000158801	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b	ENSGT00940000161194	ENSGT00940000160866	ENSGT00940000160855	ENSGT00940000160009
Tetraodon	MODERN SPECIES	24	zgc:194242 (ENSTNIG00000015027)	ube2t (ENSTNIG00000015028)	LGR6 (ENSTNIG00000015029)	ENSTNIG00000015030	TEAD3 (ENSTNIG00000015031)	PKP1 (ENSTNIG00000015032)	tnnt2a (ENSTNIG00000015033)	lad1 (ENSTNIG00000015034)	ENSTNIG00000015035	NAV1 (ENSTNIG00000015036)	mybpha (ENSTNIG00000015037)	ENSTNIG00000001468	APOBEC2 (ENSTNIG00000015038)	ENSTNIG00000001385	ENSTNIG00000015039	wnt2bb (ENSTNIG00000015040) #22	ENSTNIG00000015041 ##26	TAFA3 (ENSTNIG00000015042) #28	csad (ENSTNIG00000015043)	znf740b (ENSTNIG00000015044)	copz1 (ENSTNIG00000015045)	nfe2 (ENSTNIG00000015046)	hnrnpa1b (ENSTNIG00000015047)	cbx5 (ENSTNIG00000015048)	hoxc4a (ENSTNIG00000001759)	hoxc5a (ENSTNIG00000001760)	hoxc6a (ENSTNIG00000001761)	hoxc8a (ENSTNIG00000001762)	hoxc9a (ENSTNIG00000001763)	hoxc10a (ENSTNIG00000017168)	hoxc11a (ENSTNIG00000001772)
Eupecaria_A	ANCESTRAL SPECIES	4	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00980000201100	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000161892	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a
Eupecaria_B	ANCESTRAL SPECIES	5	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00980000201100	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000161892	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a
Perciformes	ANCESTRAL SPECIES	4	ENSGT01030000234555.a.a.b.a.b.a.d #16	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801.h	ENSGT00940000161892	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
Perciformes_a	ANCESTRAL SPECIES	2	ENSGT01030000234555.a.a.b.a.b.a.d #16	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801.h	ENSGT00940000161892	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
Channel bull blenny	MODERN SPECIES	21	TEAD3 (ENSCGOG00000008922)	PKP1 (ENSCGOG00000009065)	tnnt2a (ENSCGOG00000009111)	ENSCGOG00000009593	phlda3 (ENSCGOG00000009599)	csrp1a (ENSCGOG00000009604)	ENSCGOG00000009612	NAV1 (ENSCGOG00000009617)	mybpha (ENSCGOG00000009628)	ENSCGOG00000009666	apobec2b (ENSCGOG00000009696)	ENSCGOG00000009700	ccdc115 (ENSCGOG00000009711)	ebp (ENSCGOG00000009729)	ENSCGOG00000009746	WNT2B (ENSCGOG00000009756) #22	mov10b.1 (ENSCGOG00000009843) #25	ENSCGOG00000011024 ##26	tafa3b (ENSCGOG00000011069) #28	zgc:174906 (ENSCGOG00000011071)	csad (ENSCGOG00000011104)	znf740b (ENSCGOG00000012279)	copz1 (ENSCGOG00000012310)	ENSCGOG00000012875	nfe2 (ENSCGOG00000012901)	cbx5 (ENSCGOG00000012911)	ENSCGOG00000012918	ENSCGOG00000012931	hoxc4a (ENSCGOG00000012936)	hoxc5a (ENSCGOG00000012940)	hoxc6a (ENSCGOG00000012945)
Pike perch	MODERN SPECIES	257	ENSSLUG00000012062	ENSSLUG00000012067 #16	TEAD3 (ENSSLUG00000012074)	PKP1 (ENSSLUG00000012132)	tnnt2a (ENSSLUG00000012147)	ENSSLUG00000012153	phlda3 (ENSSLUG00000012166)	csrp1a (ENSSLUG00000012169)	mybpha (ENSSLUG00000012250)	ENSSLUG00000012277	apobec2b (ENSSLUG00000012289)	ENSSLUG00000012290	ccdc115 (ENSSLUG00000012292)	ebp (ENSSLUG00000012297)	ENSSLUG00000012301	WNT2B (ENSSLUG00000012306) #22
Cottioidei	ANCESTRAL SPECIES	2	ENSGT00940000155067.b.b	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801.h	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b	ENSGT00940000161194
Lumpfish	MODERN SPECIES	22	ube2t (ENSCLMG00005013680)	LGR6 (ENSCLMG00005013679)	ENSCLMG00005013678	TEAD3 (ENSCLMG00005013677)	PKP1 (ENSCLMG00005013675)	tnnt2a (ENSCLMG00005013674)	ENSCLMG00005013671	phlda3 (ENSCLMG00005013669)	csrp1a (ENSCLMG00005013668)	NAV1 (ENSCLMG00005013665)	ENSCLMG00005013621	apobec2b (ENSCLMG00005013620)	ccdc115 (ENSCLMG00005013619)	ebp (ENSCLMG00005013618)	ENSCLMG00005013616	WNT2B (ENSCLMG00005013614) #22	mov10b.1 (ENSCLMG00005011806) #25	ENSCLMG00005011796 ##26	tafa3b (ENSCLMG00005011793) #28	zgc:174906 (ENSCLMG00005011792)	csad (ENSCLMG00005009685)	znf740b (ENSCLMG00005009670)	copz1 (ENSCLMG00005009604)	nfe2 (ENSCLMG00005009600)	hnrnpa1a (ENSCLMG00005009597)	cbx5 (ENSCLMG00005009594)	ENSCLMG00005009591	ENSCLMG00005009589	hoxc4a (ENSCLMG00005009588)	hoxc5a (ENSCLMG00005009587)	hoxc6a (ENSCLMG00005009586)
Stickleback	MODERN SPECIES	11	PKP1 (ENSGACG00000009752)	tnnt2a (ENSGACG00000009747)	ENSGACG00000009743	ENSGACG00000009740	ENSGACG00000009730	phlda3 (ENSGACG00000009727)	csrp1a (ENSGACG00000009706)	NAV1 (ENSGACG00000009691)	mybpha (ENSGACG00000009683)	ENSGACG00000009673	apobec2b (ENSGACG00000009663)	ENSGACG00000009660	ccdc115 (ENSGACG00000009654)	ebp (ENSGACG00000009646)	ENSGACG00000009645	WNT2B (ENSGACG00000009636) #22	mov10b.1 (ENSGACG00000009612) #25	ENSGACG00000009574 ##26	tafa3b (ENSGACG00000009569) #28	zgc:174906 (ENSGACG00000009565)	csad (ENSGACG00000009463)	znf740b (ENSGACG00000009456)	copz1 (ENSGACG00000009444)	nfe2 (ENSGACG00000009442)	ENSGACG00000009435	cbx5 (ENSGACG00000009433)	ENSGACG00000009431	ENSGACG00000009430	ENSGACG00000009429	hoxc4a (ENSGACG00000009421)	hoxc5a (ENSGACG00000009416)
Eupecaria_C	ANCESTRAL SPECIES	5	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00980000201100	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00950000183123	ENSGT00940000158801	ENSGT00940000161892	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	15	ENSGT01030000234555.a.a.b.a.b.a.d #16	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000161892	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a
Large yellow croaker	MODERN SPECIES	487	TEAD3 (ENSLCRG00005004455)	PKP1 (ENSLCRG00005005166)	tnnt2a (ENSLCRG00005005169)	ENSLCRG00005005170	phlda3 (ENSLCRG00005005171)	csrp1a (ENSLCRG00005005174)	ENSLCRG00005005249	NAV1 (ENSLCRG00005005250)	mybpha (ENSLCRG00005005711)	ENSLCRG00005005713	apobec2b (ENSLCRG00005005714)	ENSLCRG00005005715	ccdc115 (ENSLCRG00005005716)	ebp (ENSLCRG00005005731)	ENSLCRG00005005733	wnt2bb (ENSLCRG00005005735) #22	ENSLCRG00005005736 #25	MOV10 (ENSLCRG00005005754) #25	ENSLCRG00005007180 ##26	tafa3b (ENSLCRG00005007181) #28	zgc:174906 (ENSLCRG00005007182)	csad (ENSLCRG00005007188)	znf740b (ENSLCRG00005010162)	copz1 (ENSLCRG00005010175)	nfe2 (ENSLCRG00005010621)	ENSLCRG00005010625	cbx5 (ENSLCRG00005010628)	ENSLCRG00005010629	ENSLCRG00005010631	hoxc4a (ENSLCRG00005010632)	hoxc5a (ENSLCRG00005010633)
Gilthead seabream	MODERN SPECIES	21	ENSSAUG00010014224	ENSSAUG00010014315	ENSSAUG00010014392	samhd1 (ENSSAUG00010014404)	phlda3 (ENSSAUG00010014856)	csrp1a (ENSSAUG00010014858)	NAV1 (ENSSAUG00010014865)	mybpha (ENSSAUG00010014947)	ENSSAUG00010014951	ENSSAUG00010014952	apobec2b (ENSSAUG00010014953)	ENSSAUG00010014954	ccdc115 (ENSSAUG00010014955)	ebp (ENSSAUG00010014956)	ENSSAUG00010014958	wnt2bb (ENSSAUG00010014959) #22	ENSSAUG00010014965 #25	ENSSAUG00010014995 #25	MOV10 (ENSSAUG00010018222) #25	ENSSAUG00010018846 ##26	tafa3b (ENSSAUG00010018847) #28	ENSSAUG00010018849	zgc:174906 (ENSSAUG00010018851)	csad (ENSSAUG00010018857)	znf740b (ENSSAUG00010019547)	copz1 (ENSSAUG00010019553)	nfe2 (ENSSAUG00010019562)	hnrnpa1b (ENSSAUG00010019563)	cbx5 (ENSSAUG00010019566)	ENSSAUG00010019570	ENSSAUG00010019572
Percomorphaceae_D	ANCESTRAL SPECIES	4	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000161892	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
Anabantaria	ANCESTRAL SPECIES	3	ENSGT01030000234555.a.a.b.a.b.a.d #16	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
Zig-zag eel	MODERN SPECIES	21	ENSMAMG00000008335	ENSMAMG00000026539 #16	ENSMAMG00000008285	PKP1 (ENSMAMG00000008273)	tnnt2a (ENSMAMG00000008247)	ENSMAMG00000008231	phlda3 (ENSMAMG00000008224)	csrp1a (ENSMAMG00000008204)	NAV1 (ENSMAMG00000008140)	mybpha (ENSMAMG00000008003)	ENSMAMG00000007968	apobec2b (ENSMAMG00000007926)	ccdc115 (ENSMAMG00000007913)	ebp (ENSMAMG00000026843)	ENSMAMG00000007890	ENSMAMG00000007866 #22	ENSMAMG00000007824 #25	ENSMAMG00000007807 #25	ENSMAMG00000026132 ##26	tafa3b (ENSMAMG00000007786) #28	zgc:174906 (ENSMAMG00000007756)	csad (ENSMAMG00000007702)	znf740b (ENSMAMG00000027286)	copz1 (ENSMAMG00000007647)	nfe2 (ENSMAMG00000007629)	ENSMAMG00000007606	cbx5 (ENSMAMG00000007589)	ENSMAMG00000024742	hoxc4a (ENSMAMG00000007567)	hoxc5a (ENSMAMG00000007559)	hoxc6a (ENSMAMG00000007554)
Anabantoidei	ANCESTRAL SPECIES	2	ENSGT01030000234555.a.a.b.a.b.a.d #16	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b	ENSGT00940000161194
Siamese fighting fish	MODERN SPECIES	18	TEAD3 (ENSBSLG00000008225)	PKP1 (ENSBSLG00000008376)	tnnt2a (ENSBSLG00000008433)	ENSBSLG00000008494	phlda3 (ENSBSLG00000008525)	csrp1a (ENSBSLG00000008550)	NAV1 (ENSBSLG00000008607)	mybpha (ENSBSLG00000009365)	ENSBSLG00000009413	ENSBSLG00000009438	apobec2b (ENSBSLG00000009447)	ENSBSLG00000009454	ccdc115 (ENSBSLG00000009462)	ebp (ENSBSLG00000009466)	ENSBSLG00000009478	WNT2B (ENSBSLG00000009490) #22	mov10b.1 (ENSBSLG00000009530) #25	ENSBSLG00000009770 ##26	tafa3b (ENSBSLG00000009819) #28	zgc:174906 (ENSBSLG00000009853)	znf740b (ENSBSLG00000009869)	copz1 (ENSBSLG00000009890)	nfe2 (ENSBSLG00000010070)	hnrnpa1a (ENSBSLG00000010079)	cbx5 (ENSBSLG00000010110)	hoxc4a (ENSBSLG00000010579)	hoxc5a (ENSBSLG00000010606)	hoxc6a (ENSBSLG00000010644)	hoxc8a (ENSBSLG00000010671)	hoxc9a (ENSBSLG00000010688)	hoxc10a (ENSBSLG00000010709)
Climbing perch	MODERN SPECIES	20	ENSATEG00000023330	PKP1 (ENSATEG00000023297)	tnnt2a (ENSATEG00000023286)	ENSATEG00000023274	phlda3 (ENSATEG00000023269)	csrp1a (ENSATEG00000023266)	NAV1 (ENSATEG00000023222)	mybpha (ENSATEG00000023168)	ENSATEG00000029160	ENSATEG00000023072	apobec2b (ENSATEG00000023043)	ENSATEG00000029676	ccdc115 (ENSATEG00000023039)	ebp (ENSATEG00000023035)	ENSATEG00000023033	ENSATEG00000023028 #22	ENSATEG00000027142 #25	ENSATEG00000023014 #25	ENSATEG00000025924 ##26	ENSATEG00000029432	tafa3b (ENSATEG00000027191) #28	zgc:174906 (ENSATEG00000022991)	znf740b (ENSATEG00000029541)	copz1 (ENSATEG00000022959)	nfe2 (ENSATEG00000026477)	ENSATEG00000022918	cbx5 (ENSATEG00000030136)	ENSATEG00000022897	ENSATEG00000029038	hoxc4a (ENSATEG00000022878)	hoxc5a (ENSATEG00000022872)
Carangaria	ANCESTRAL SPECIES	2	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000161892	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
Pleuronectoidei	ANCESTRAL SPECIES	14	ENSGT00940000157365	ENSGT00940000159939.h	ENSGT00940000155067.b.b	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000159166 #22	ENSGT00940000166364	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00950000183123	ENSGT00940000158801	ENSGT00940000161892	ENSGT00940000168241	ENSGT00940000160794	ENSGT00940000161023.a
Tongue sole	MODERN SPECIES	1	TCTE1 (ENSCSEG00000001107)	pim1 (ENSCSEG00000001104)	ENSCSEG00000001096	ENSCSEG00000001090	ENSCSEG00000001085	TEAD3 (ENSCSEG00000000878)	tnnt2a (ENSCSEG00000000775)	ENSCSEG00000000762	ENSCSEG00000000738	NAV1 (ENSCSEG00000000720)	mybpha (ENSCSEG00000000704)	ENSCSEG00000000697	apobec2b (ENSCSEG00000000690)	ccdc115 (ENSCSEG00000000687)	ebp (ENSCSEG00000000681)	WNT2B (ENSCSEG00000000675) #22	acss2 (ENSCSEG00000000649)	ENSCSEG00000000640	ENSCSEG00000000638	ENSCSEG00000000636	ENSCSEG00000000631	ENSCSEG00000000625	atp6ap1a (ENSCSEG00000000617)	ENSCSEG00000000609	tafazzin (ENSCSEG00000000597)	ndnl2 (ENSCSEG00000000585)	ENSCSEG00000000564	ENSCSEG00000000504	PDZD4 (ENSCSEG00000000480)	ENSCSEG00000000476	IQSEC2 (ENSCSEG00000000459)
Turbot	MODERN SPECIES	2	ENSSMAG00000037231	ENSSMAG00000005763	ENSSMAG00000005449	ENSSMAG00000005381	tnnt2a (ENSSMAG00000005351)	ENSSMAG00000005343	phlda3 (ENSSMAG00000005338)	ENSSMAG00000005320	ENSSMAG00000005154	mybpha (ENSSMAG00000005120)	ENSSMAG00000035937	apobec2b (ENSSMAG00000005110)	ENSSMAG00000027541	ccdc115 (ENSSMAG00000005059)	ebp (ENSSMAG00000005050)	ENSSMAG00000005032 #22	ENSSMAG00000005039	ENSSMAG00000004913 #25	ENSSMAG00000033443 ##26	tafa3b (ENSSMAG00000004885) #28	zgc:174906 (ENSSMAG00000023309)	csad (ENSSMAG00000004800)	znf740b (ENSSMAG00000004738)	copz1 (ENSSMAG00000004686)	nfe2 (ENSSMAG00000032096)	hnrnpa1b (ENSSMAG00000004641)	cbx5 (ENSSMAG00000004605)	ENSSMAG00000004592	hoxc4a (ENSSMAG00000004569)	hoxc5a (ENSSMAG00000004565)	hoxc6a (ENSSMAG00000004528)
Carangaria_A	ANCESTRAL SPECIES	1	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00940000158431.a.b	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000161892	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
Barramundi perch	MODERN SPECIES	629										ENSLCAG00010010619	apobec2b (ENSLCAG00010010629)	ENSLCAG00010010646	ccdc115 (ENSLCAG00010010650)	ebp (ENSLCAG00010010655)	ENSLCAG00010010658	WNT2B (ENSLCAG00010010660) #22	ENSLCAG00010010661 #25	ENSLCAG00010010668 #25
Seriola	ANCESTRAL SPECIES	8	ENSGT01030000234555.a.a.b.a.b.a.d #16	ENSGT00950000182956.b.b.b.e.b	ENSGT00940000156735.d	ENSGT00940000154709.a.b.a.b	ENSGT00730000112095	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000156616.j	ENSGT00390000012929	ENSGT00530000063715.a	ENSGT00940000166364	ENSGT00940000159166 #22	ENSGT00940000156024.i.a.f #25	ENSGT00940000156024.i.a.e #25	ENSGT00950000182945.b.a.a.a.a.a.b ##26	ENSGT00940000155644.a.a #28	ENSGT00540000073797	ENSGT00940000158240	ENSGT00940000159609	ENSGT00390000004405.a	ENSGT00950000182892.a.a.a	ENSGT00940000165646.A	ENSGT00940000158801	ENSGT00940000161892	ENSGT00940000160794	ENSGT00940000161023.a	ENSGT00940000159254.b
Greater amberjack	MODERN SPECIES	23	ENSSDUG00000014808 #16	TEAD3 (ENSSDUG00000014772)	PKP1 (ENSSDUG00000014753)	tnnt2a (ENSSDUG00000014693)	lad1 (ENSSDUG00000014670)	ENSSDUG00000014657	phlda3 (ENSSDUG00000014656)	csrp1a (ENSSDUG00000014638)	NAV1 (ENSSDUG00000014606)	mybpha (ENSSDUG00000014584)	ENSSDUG00000014556	apobec2b (ENSSDUG00000014543)	ccdc115 (ENSSDUG00000014537)	ebp (ENSSDUG00000014525)	ENSSDUG00000014492	WNT2B (ENSSDUG00000014473) #22	ENSSDUG00000014418 #25	MOV10 (ENSSDUG00000014383) #25	ENSSDUG00000014362 ##26	tafa3b (ENSSDUG00000014351) #28	zgc:174906 (ENSSDUG00000014344)	csad (ENSSDUG00000014322)	znf740b (ENSSDUG00000014302)	copz1 (ENSSDUG00000014273)	nfe2 (ENSSDUG00000014264)	hnrnpa1a (ENSSDUG00000013908)	cbx5 (ENSSDUG00000013868)	ENSSDUG00000013860	hoxc4a (ENSSDUG00000013856)	hoxc5a (ENSSDUG00000013853)	hoxc6a (ENSSDUG00000013847)
Yellowtail amberjack	MODERN SPECIES	3093	ADORA3 (ENSSLDG00000002352) #16	TEAD3 (ENSSLDG00000002454)	PKP1 (ENSSLDG00000002826)	tnnt2a (ENSSLDG00000002845)	lad1 (ENSSLDG00000003041)	ENSSLDG00000003096	phlda3 (ENSSLDG00000003113)	csrp1a (ENSSLDG00000003139)	NAV1 (ENSSLDG00000003183)	mybpha (ENSSLDG00000003280)	apobec2b (ENSSLDG00000003321)	ENSSLDG00000003334	ccdc115 (ENSSLDG00000003357)	ebp (ENSSLDG00000003388)	ENSSLDG00000003403	WNT2B (ENSSLDG00000003413) #22	ENSSLDG00000003441 #25	ENSSLDG00000003521 #25	ENSSLDG00000003562 ##26	tafa3b (ENSSLDG00000003574) #28	zgc:174906 (ENSSLDG00000003594)	csad (ENSSLDG00000003612)	znf740b (ENSSLDG00000003633)	copz1 (ENSSLDG00000003673)	nfe2 (ENSSLDG00000003693)	hnrnpa1a (ENSSLDG00000003718)	cbx5 (ENSSLDG00000003859)	ENSSLDG00000003881	hoxc4a (ENSSLDG00000003886)	hoxc5a (ENSSLDG00000003893)	hoxc6a (ENSSLDG00000003902)
Tiger tail seahorse	MODERN SPECIES	112	ENSHCOG00000007755	ENSHCOG00000007747 #9	pm20d1.2 (ENSHCOG00000007739)	mfsd4ab (ENSHCOG00000007729)	ENSHCOG00000007698	ENSHCOG00000007687	fbxo44.3 (ENSHCOG00000007679)	dnajc11a (ENSHCOG00000007673)	ENSHCOG00000007639	ENSHCOG00000007627	ENSHCOG00000007599	tnfrsf9a (ENSHCOG00000007579)	dvl1b (ENSHCOG00000007572)	mxra8b (ENSHCOG00000007542)	aurkaip1 (ENSHCOG00000007535)	WNT2B (ENSHCOG00000007521) #22
Pinecone sodierfish	MODERN SPECIES	21	ENSMMDG00005010250	acot7 (ENSMMDG00005010252)	GPR153 (ENSMMDG00005010253)	her3 (ENSMMDG00005010255)	tas1r2.1 (ENSMMDG00005010259)	rer1 (ENSMMDG00005010334)	tp73 (ENSMMDG00005010339)	wrap73 (ENSMMDG00005010353)	TPRG1L (ENSMMDG00005010498)	ENSMMDG00005010499	ENSMMDG00005010501	ENSMMDG00005010505	ENSMMDG00005010506	ENSMMDG00005010508	ENSMMDG00005010510	wnt2bb (ENSMMDG00005010512) #22	ENSMMDG00005010517 #25	ENSMMDG00005010615 #25	ENSMMDG00005011430 ##26	tafa3b (ENSMMDG00005011432) #28	zgc:174906 (ENSMMDG00005011435)	znf740b (ENSMMDG00005011438)	copz1 (ENSMMDG00005011444)	nfe2 (ENSMMDG00005011664)	hnrnpa1a (ENSMMDG00005011666)	cbx5 (ENSMMDG00005011668)	ENSMMDG00005011671	ENSMMDG00005011672	hoxc4a (ENSMMDG00005011673)	hoxc6a (ENSMMDG00005011675)	hoxc5a (ENSMMDG00005011678)
Protacanthopterygii	ANCESTRAL SPECIES	478															ENSGT00940000156024.i.a #25	ENSGT00940000159166 #22
Northern pike	MODERN SPECIES	11	ENSELUG00000034309	ENSELUG00000034231	ENSELUG00000027391	ccnq (ENSELUG00000030631)	cfap126 (ENSELUG00000000891)	ENSELUG00000032308	ap4b1 (ENSELUG00000020320)	sephs3 (ENSELUG00000020249)	ENSELUG00000031420	ikbkg (ENSELUG00000020223)	ENSELUG00000020197	LGR6 (ENSELUG00000020164)	ube2t (ENSELUG00000001213)	etv7 (ENSELUG00000020000)	mov10b.1 (ENSELUG00000000566) #25	WNT2B (ENSELUG00000015488) #22	ENSELUG00000015513	ebp (ENSELUG00000015525)	ccdc115 (ENSELUG00000015591)	ENSELUG00000032781	mybpha (ENSELUG00000015671)	NAV1 (ENSELUG00000015750)	tnnt2a (ENSELUG00000015772)	ENSELUG00000000590	ENSELUG00000031633	ENSELUG00000015830	ENSELUG00000033887
Reedfish	MODERN SPECIES	274																ENSECRG00000021389 #22	st7l (ENSECRG00000021421) #23