Euteleostomi	DUPLICATION
Euteleostomi	ANCESTRAL SPECIES	182														ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000157118.c.b ##32	ENSGT00390000004923.A	ENSGT00390000003245	ENSGT00940000153375	ENSGT00390000018108	ENSGT00950000182963.a.b	ENSGT00940000171296	ENSGT00940000156949
Sarcopterygii	ANCESTRAL SPECIES	379														ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32
Tetrapoda	ANCESTRAL SPECIES	119	ENSGT00390000017974	ENSGT01090000260070.C	ENSGT00940000159442	ENSGT00940000158787	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34
Amniota	ANCESTRAL SPECIES	35	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Mammalia	ANCESTRAL SPECIES	19	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Theria	ANCESTRAL SPECIES	16	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Eutheria	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Primates	ANCESTRAL SPECIES	4	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01100000263986	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT01100000267028	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000155720.j	ENSGT00940000165247	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00910000147438	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT01100000267028	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT01060000248564.a.b #10	ENSGT00940000155720.j	ENSGT00940000165247	ENSGT00910000147109	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00910000147438	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT01100000267028	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Cercopithecinae	ANCESTRAL SPECIES		ENSGT01060000248564.a.b #10	ENSGT00940000155720.j	ENSGT00940000165247	ENSGT00910000147109	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00910000147438	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT01100000267028	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT01060000248564.a.b #10	ENSGT00940000155720.j	ENSGT00940000165247	ENSGT00910000147109	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00910000147438	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT01100000267028	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Macaca	ANCESTRAL SPECIES		ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000155720.j	ENSGT00940000165247	ENSGT00910000147109	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT01100000263493.a.b.a.b.a.a.b.a.b.b.a.b.a.b #17	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000161621.A.a.b.b.b.a.a.a.a #33	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Crab-eating macaque	MODERN SPECIES		GALE (ENSMFAG00000001926) #7	HMGCL (ENSMFAG00000001549) #8	FUCA1 (ENSMFAG00000001050) #9	CNR2 (ENSMFAG00000009512) #10	PNRC2 (ENSMFAG00000041681) #11	SRSF10 (ENSMFAG00000046011) #12	MYOM3 (ENSMFAG00000035620) #13	IL22RA1 (ENSMFAG00000000068) #14	IFNLR1 (ENSMFAG00000050914) #15	GRHL3 (ENSMFAG00000042460) #16	ENSMFAG00000059335 #17	STPG1 (ENSMFAG00000038760) #18	NIPAL3 (ENSMFAG00000002140) #19	RCAN3 (ENSMFAG00000032259) #20	NCMAP (ENSMFAG00000060484) #21	SRRM1 (ENSMFAG00000025726) #22	CLIC4 (ENSMFAG00000038789) #23	RUNX3 (ENSMFAG00000031725) #24	ENSMFAG00000052857 #25	ENSMFAG00000062275 #26	SYF2 (ENSMFAG00000041831) #27	RSRP1 (ENSMFAG00000003728) #28	TMEM50A (ENSMFAG00000033857) #29	ENSMFAG00000042317 #30	MACO1 (ENSMFAG00000035460) #31	LDLRAP1 (ENSMFAG00000065124) #32	ENSMFAG00000051195 #33	MAN1C1 (ENSMFAG00000034191) #34	SELENON (ENSMFAG00000036435) #35	MTFR1L (ENSMFAG00000037554) #36	AUNIP (ENSMFAG00000041647) #37
Rhesus	MODERN SPECIES		CNR2 (ENSMMUG00000004217) #10	PNRC2 (ENSMMUG00000013783) #11	SRSF10 (ENSMMUG00000038562) #12	MYOM3 (ENSMMUG00000023052) #13	IL22RA1 (ENSMMUG00000063454) #14	IFNLR1 (ENSMMUG00000023057) #15	GRHL3 (ENSMMUG00000004463) #16	ENSMMUG00000063754 #17	STPG1 (ENSMMUG00000054255) #18	NIPAL3 (ENSMMUG00000004466) #19	ENSMMUG00000054190 ##26	RCAN3 (ENSMMUG00000022927) #20	ENSMMUG00000053036	ENSMMUG00000058954 ##17	NCMAP (ENSMMUG00000057675) #21	SRRM1 (ENSMMUG00000006645) #22	CLIC4 (ENSMMUG00000002416) #23	RUNX3 (ENSMMUG00000002420) #24	ENSMMUG00000057953 ##17	SYF2 (ENSMMUG00000002968) #27	RSRP1 (ENSMMUG00000002970) #28	TMEM50A (ENSMMUG00000032217) #29	RHCE (ENSMMUG00000011156) #30	MACO1 (ENSMMUG00000018014) #31	LDLRAP1 (ENSMMUG00000051142) #32	ENSMMUG00000063601	ENSMMUG00000050620	ENSMMUG00000057092 #33	MAN1C1 (ENSMMUG00000004788) #34	MTFR1L (ENSMMUG00000007854) #36	AUNIP (ENSMMUG00000007856) #37
Pig-tailed macaque	MODERN SPECIES	217	CNR2 (ENSMNEG00000005492) #10	ENSMNEG00000038158	ENSMNEG00000038324	SRSF10 (ENSMNEG00000041500) #12	ENSMNEG00000028650	MYOM3 (ENSMNEG00000030668) #13	IL22RA1 (ENSMNEG00000035805) #14	IFNLR1 (ENSMNEG00000034482) #15	ENSMNEG00000003315	ENSMNEG00000004352	GRHL3 (ENSMNEG00000028885) #16	STPG1 (ENSMNEG00000028123) #18	NIPAL3 (ENSMNEG00000043454) #19	RCAN3 (ENSMNEG00000045388) #20	NCMAP (ENSMNEG00000020288) #21	SRRM1 (ENSMNEG00000039415) #22	CLIC4 (ENSMNEG00000032964) #23	RUNX3 (ENSMNEG00000038114) #24	SYF2 (ENSMNEG00000030180) #27	RSRP1 (ENSMNEG00000031088) #28	TMEM50A (ENSMNEG00000028657) #29	ENSMNEG00000039154 #30	MACO1 (ENSMNEG00000031369) #31	LDLRAP1 (ENSMNEG00000027678) #32	MAN1C1 (ENSMNEG00000042958) #34	SELENON (ENSMNEG00000042835) #35	MTFR1L (ENSMNEG00000033505) #36	AUNIP (ENSMNEG00000029426) #37	STMN1 (ENSMNEG00000044643)	ENSMNEG00000027940	PAFAH2 (ENSMNEG00000023207)
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT01060000248564.a.b #10	ENSGT00940000155720.j	ENSGT00940000165247	ENSGT00910000147109	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00910000147438	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT01100000267028	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Olive baboon	MODERN SPECIES		CNR2 (ENSPANG00000025470) #10	ENSPANG00000011013	ENSPANG00000014462	ENSPANG00000021680 #12	ENSPANG00000037605 ##17	MYOM3 (ENSPANG00000003129) #13	IL22RA1 (ENSPANG00000021938) #14	IFNLR1 (ENSPANG00000014431) #15	ENSPANG00000045239	GRHL3 (ENSPANG00000024748) #16	STPG1 (ENSPANG00000023479) #18	NIPAL3 (ENSPANG00000005051) #19	ENSPANG00000043555	RCAN3 (ENSPANG00000005865) #20	NCMAP (ENSPANG00000033614) #21	SRRM1 (ENSPANG00000010194) #22	CLIC4 (ENSPANG00000023168) #23	ENSPANG00000040050 #17	RUNX3 (ENSPANG00000008140) #24	ENSPANG00000044753	SYF2 (ENSPANG00000008139) #27	RSRP1 (ENSPANG00000008896) #28	TMEM50A (ENSPANG00000005864) #29	ENSPANG00000010026 #30	MACO1 (ENSPANG00000000594) #31	LDLRAP1 (ENSPANG00000012319) #32	MAN1C1 (ENSPANG00000009808) #34	ENSPANG00000020847 #35	ENSPANG00000038573 #35	MTFR1L (ENSPANG00000005970) #36	AUNIP (ENSPANG00000008189) #37
Cercopithecinae_d	ANCESTRAL SPECIES	1	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000155720.j	ENSGT00940000165247	ENSGT00910000147109	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00910000147438	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Sooty mangabey	MODERN SPECIES	227	FUCA1 (ENSCATG00000030013) #9	CNR2 (ENSCATG00000006881) #10	ENSCATG00000033706	ENSCATG00000017417	SRSF10 (ENSCATG00000031598) #12	ENSCATG00000017493	MYOM3 (ENSCATG00000035070) #13	IL22RA1 (ENSCATG00000029904) #14	IFNLR1 (ENSCATG00000026704) #15	ENSCATG00000006798	GRHL3 (ENSCATG00000030059) #16	STPG1 (ENSCATG00000030007) #18	NIPAL3 (ENSCATG00000019829) #19	RCAN3 (ENSCATG00000033944) #20	NCMAP (ENSCATG00000017154) #21	SRRM1 (ENSCATG00000031303) #22	CLIC4 (ENSCATG00000033748) #23	RUNX3 (ENSCATG00000016885) #24	SYF2 (ENSCATG00000026917) #27	RSRP1 (ENSCATG00000033666) #28	TMEM50A (ENSCATG00000016342) #29	ENSCATG00000021309 #30	MACO1 (ENSCATG00000033846) #31	LDLRAP1 (ENSCATG00000029730) #32	MAN1C1 (ENSCATG00000031483) #34	SELENON (ENSCATG00000015472) #35	MTFR1L (ENSCATG00000020697) #36	AUNIP (ENSCATG00000019786) #37	PAQR7 (ENSCATG00000005096)	ENSCATG00000006529	STMN1 (ENSCATG00000016402)
Drill	MODERN SPECIES	691	HMGCL (ENSMLEG00000034060) #8	FUCA1 (ENSMLEG00000029638) #9	CNR2 (ENSMLEG00000005287) #10	ENSMLEG00000029313	ENSMLEG00000032459	ENSMLEG00000016013 #12	MYOM3 (ENSMLEG00000041098) #13	IL22RA1 (ENSMLEG00000038286) #14	IFNLR1 (ENSMLEG00000043990) #15	ENSMLEG00000027677	GRHL3 (ENSMLEG00000005584) #16	STPG1 (ENSMLEG00000040500) #18	NIPAL3 (ENSMLEG00000043209) #19	RCAN3 (ENSMLEG00000033022) #20	NCMAP (ENSMLEG00000033937) #21	SRRM1 (ENSMLEG00000038030) #22	CLIC4 (ENSMLEG00000043578) #23	RUNX3 (ENSMLEG00000040351) #24	SYF2 (ENSMLEG00000030248) #27	RSRP1 (ENSMLEG00000044189) #28	TMEM50A (ENSMLEG00000043168) #29	ENSMLEG00000034223 #30	MACO1 (ENSMLEG00000040422) #31	LDLRAP1 (ENSMLEG00000032888) #32
Vervet Monkey	MODERN SPECIES	12	LYPLA2 (ENSCSAG00000000932)	GALE (ENSCSAG00000000933) #7	HMGCL (ENSCSAG00000000934) #8	CNR2 (ENSCSAG00000000643) #10	PNRC2 (ENSCSAG00000000644) #11	SRSF10 (ENSCSAG00000000935) #12	MYOM3 (ENSCSAG00000000936) #13	IL22RA1 (ENSCSAG00000000937) #14	IFNLR1 (ENSCSAG00000000938) #15	GRHL3 (ENSCSAG00000000939) #16	STPG1 (ENSCSAG00000000940) #18	NIPAL3 (ENSCSAG00000000941) #19	ENSCSAG00000000942	RCAN3 (ENSCSAG00000000943) #20	NCMAP (ENSCSAG00000000944) #21	SRRM1 (ENSCSAG00000000945) #22	CLIC4 (ENSCSAG00000000946) #23	RUNX3 (ENSCSAG00000000947) #24	ENSCSAG00000000645	SYF2 (ENSCSAG00000000948) #27	RSRP1 (ENSCSAG00000000949) #28	TMEM50A (ENSCSAG00000000950) #29	ENSCSAG00000000951 #30	MACO1 (ENSCSAG00000000952) #31	LDLRAP1 (ENSCSAG00000000953) #32	MAN1C1 (ENSCSAG00000000954) #34	ENSCSAG00000000955 #35	ENSCSAG00000000956 #35	MTFR1L (ENSCSAG00000000958) #36	AUNIP (ENSCSAG00000000959) #37	PAQR7 (ENSCSAG00000000646)
Rhinopithecus	ANCESTRAL SPECIES	80	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000155720.j	ENSGT00940000165247	ENSGT00910000147109	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00910000147438	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.cb	ENSGT00390000005233.a
Golden snub-nosed monkey	MODERN SPECIES	3019	FUCA1 (ENSRROG00000031469) #9	CNR2 (ENSRROG00000010252) #10	ENSRROG00000043600	ENSRROG00000033982	ENSRROG00000034255	SRSF10 (ENSRROG00000043248) #12	MYOM3 (ENSRROG00000045079) #13	IL22RA1 (ENSRROG00000030912) #14	IFNLR1 (ENSRROG00000042009) #15	ENSRROG00000035787	GRHL3 (ENSRROG00000031177) #16	STPG1 (ENSRROG00000038964) #18	NIPAL3 (ENSRROG00000041947) #19	RCAN3 (ENSRROG00000032065) #20	NCMAP (ENSRROG00000045275) #21	SRRM1 (ENSRROG00000035151) #22	CLIC4 (ENSRROG00000013652) #23	RUNX3 (ENSRROG00000039320) #24	SYF2 (ENSRROG00000001347) #27	RSRP1 (ENSRROG00000037704) #28	TMEM50A (ENSRROG00000037442) #29	ENSRROG00000036964 #30	MACO1 (ENSRROG00000044580) #31	LDLRAP1 (ENSRROG00000041057) #32	MAN1C1 (ENSRROG00000033568) #34	SELENON (ENSRROG00000045479) #35	MTFR1L (ENSRROG00000034190) #36	AUNIP (ENSRROG00000040327) #37	PAQR7 (ENSRROG00000016432)	ENSRROG00000041015	ENSRROG00000028419
Black snub-nosed monkey	MODERN SPECIES	820	FUCA1 (ENSRBIG00000023857) #9	CNR2 (ENSRBIG00000029638) #10	ENSRBIG00000040730	ENSRBIG00000041810	ENSRBIG00000042394	ENSRBIG00000028456 #12	MYOM3 (ENSRBIG00000030907) #13	IL22RA1 (ENSRBIG00000038309) #14	IFNLR1 (ENSRBIG00000039009) #15	ENSRBIG00000037538	GRHL3 (ENSRBIG00000010295) #16	STPG1 (ENSRBIG00000040438) #18	NIPAL3 (ENSRBIG00000044771) #19	RCAN3 (ENSRBIG00000029315) #20	NCMAP (ENSRBIG00000038049) #21	SRRM1 (ENSRBIG00000035461) #22	CLIC4 (ENSRBIG00000039218) #23	RUNX3 (ENSRBIG00000041200) #24	SYF2 (ENSRBIG00000042970) #27	RSRP1 (ENSRBIG00000030694) #28
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000155720.j	ENSGT00940000165247	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00910000147438	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Hominidae	ANCESTRAL SPECIES	3	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000155720.j	ENSGT00940000165247	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00910000147438	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000155720.j	ENSGT00940000165247	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00910000147438	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b.c #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000155720.j	ENSGT00940000165247	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00910000147438	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b.c #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Pan	ANCESTRAL SPECIES		ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000155720.j	ENSGT00940000165247	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00910000147438	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a	ENSGT00940000161960	ENSGT00940000156072
Chimpanzee	MODERN SPECIES		HMGCL (ENSPTRG00000000339) #8	FUCA1 (ENSPTRG00000000340) #9	CNR2 (ENSPTRG00000024370) #10	ENSPTRG00000039900	PNRC2 (ENSPTRG00000022763)	SRSF10 (ENSPTRG00000044753) #12	MYOM3 (ENSPTRG00000000341) #13	IL22RA1 (ENSPTRG00000000342) #14	IFNLR1 (ENSPTRG00000000343) #15	ENSPTRG00000049446	GRHL3 (ENSPTRG00000000344) #16	STPG1 (ENSPTRG00000000345) #18	NIPAL3 (ENSPTRG00000000346) #19	RCAN3 (ENSPTRG00000045149) #20	NCMAP (ENSPTRG00000000348) #21	SRRM1 (ENSPTRG00000000349) #22	CLIC4 (ENSPTRG00000000350) #23	RUNX3 (ENSPTRG00000000351) #24	SYF2 (ENSPTRG00000000352) #27	RSRP1 (ENSPTRG00000000353) #28	MACO1 (ENSPTRG00000029594) #31	LDLRAP1 (ENSPTRG00000000362) #32	MAN1C1 (ENSPTRG00000000363) #34	SELENON (ENSPTRG00000022721) #35	MTFR1L (ENSPTRG00000000365) #36	AUNIP (ENSPTRG00000040706) #37	PAQR7 (ENSPTRG00000046691)	STMN1 (ENSPTRG00000000369)	PAFAH2 (ENSPTRG00000000370)	EXTL1 (ENSPTRG00000000371)	SLC30A2 (ENSPTRG00000000372)
Bonobo	MODERN SPECIES		HMGCL (ENSPPAG00000035201) #8	FUCA1 (ENSPPAG00000040238) #9	CNR2 (ENSPPAG00000013056) #10	ENSPPAG00000043708	ENSPPAG00000041814	SRSF10 (ENSPPAG00000032557) #12	MYOM3 (ENSPPAG00000033111) #13	IL22RA1 (ENSPPAG00000035561) #14	IFNLR1 (ENSPPAG00000039009) #15	ENSPPAG00000040945	GRHL3 (ENSPPAG00000027717) #16	STPG1 (ENSPPAG00000013443) #18	NIPAL3 (ENSPPAG00000034282) #19	RCAN3 (ENSPPAG00000030742) #20	NCMAP (ENSPPAG00000042429) #21	SRRM1 (ENSPPAG00000043918) #22	CLIC4 (ENSPPAG00000035372) #23	RUNX3 (ENSPPAG00000034809) #24	SYF2 (ENSPPAG00000036579) #27	ENSPPAG00000030483 #28	MACO1 (ENSPPAG00000042632) #31	LDLRAP1 (ENSPPAG00000026018) #32	MAN1C1 (ENSPPAG00000038533) #34	SELENON (ENSPPAG00000032038) #35	MTFR1L (ENSPPAG00000030443) #36	AUNIP (ENSPPAG00000031994) #37	PAQR7 (ENSPPAG00000011586)	ENSPPAG00000038785	PAFAH2 (ENSPPAG00000033860)	EXTL1 (ENSPPAG00000018172)	SLC30A2 (ENSPPAG00000036676)
Human	MODERN SPECIES		LYPLA2 (ENSG00000011009)	GALE (ENSG00000117308) #7	HMGCL (ENSG00000117305) #8	FUCA1 (ENSG00000179163) #9	CNR2 (ENSG00000188822) #10	PNRC2 (ENSG00000189266) #11	SRSF10 (ENSG00000188529) #12	MYOM3 (ENSG00000142661) #13	IL22RA1 (ENSG00000142677) #14	IFNLR1 (ENSG00000185436) #15	GRHL3 (ENSG00000158055) #16	STPG1 (ENSG00000001460) #18	NIPAL3 (ENSG00000001461) #19	RCAN3 (ENSG00000117602) #20	NCMAP (ENSG00000184454) #21	SRRM1 (ENSG00000133226) #22	CLIC4 (ENSG00000169504) #23	RUNX3 (ENSG00000020633) #24	SYF2 (ENSG00000117614) #27	RSRP1 (ENSG00000117616) #28	RHD (ENSG00000187010) #30	TMEM50A (ENSG00000183726) #29	RHCE (ENSG00000188672) #30	MACO1 (ENSG00000204178) #31	LDLRAP1 (ENSG00000157978) #32	MAN1C1 (ENSG00000117643) #34	SELENON (ENSG00000162430) #35	MTFR1L (ENSG00000117640) #36	AUNIP (ENSG00000127423) #37	PAQR7 (ENSG00000182749)	STMN1 (ENSG00000117632)
Gorilla	MODERN SPECIES		GALE (ENSGGOG00000004333) #7	HMGCL (ENSGGOG00000004339) #8	FUCA1 (ENSGGOG00000006733) #9	CNR2 (ENSGGOG00000022619) #10	ENSGGOG00000023737	ENSGGOG00000004412	ENSGGOG00000000392 #12	MYOM3 (ENSGGOG00000004080) #13	IL22RA1 (ENSGGOG00000004443) #14	IFNLR1 (ENSGGOG00000004445) #15	GRHL3 (ENSGGOG00000001792) #16	STPG1 (ENSGGOG00000001796) #18	NIPAL3 (ENSGGOG00000014858) #19	RCAN3 (ENSGGOG00000013360) #20	NCMAP (ENSGGOG00000012056) #21	SRRM1 (ENSGGOG00000005209) #22	CLIC4 (ENSGGOG00000005586) #23	RUNX3 (ENSGGOG00000004848) #24	SYF2 (ENSGGOG00000012796) #27	RSRP1 (ENSGGOG00000005343) #28	ENSGGOG00000017174 #30	TMEM50A (ENSGGOG00000012216) #29	ENSGGOG00000039842 #30	ENSGGOG00000024581	ENSGGOG00000043956	MACO1 (ENSGGOG00000007844) #31	LDLRAP1 (ENSGGOG00000007769) #32	MAN1C1 (ENSGGOG00000011458) #34	SELENON (ENSGGOG00000011465) #35	MTFR1L (ENSGGOG00000011477) #36	AUNIP (ENSGGOG00000022255) #37
Orangutan	MODERN SPECIES		PITHD1 (ENSPPYG00000001734)	LYPLA2 (ENSPPYG00000001733)	GALE (ENSPPYG00000001731) #8	FUCA1 (ENSPPYG00000001730) #9	CNR2 (ENSPPYG00000001729) #10	PNRC2 (ENSPPYG00000040540) #11	SRSF10 (ENSPPYG00000001726) #12	MYOM3 (ENSPPYG00000001724) #13	IL22RA1 (ENSPPYG00000001723) #14	IFNLR1 (ENSPPYG00000001722) #15	GRHL3 (ENSPPYG00000001721) #16	STPG1 (ENSPPYG00000001720) #18	NIPAL3 (ENSPPYG00000001719) #19	RCAN3 (ENSPPYG00000001718) #20	NCMAP (ENSPPYG00000001717) #21	SRRM1 (ENSPPYG00000001716) #22	CLIC4 (ENSPPYG00000001715) #23	RUNX3 (ENSPPYG00000001714) #24	SYF2 (ENSPPYG00000001713) #27	RSRP1 (ENSPPYG00000001712) #28	TMEM50A (ENSPPYG00000001711) #29	ENSPPYG00000001710 #30	MACO1 (ENSPPYG00000001709) #31	LDLRAP1 (ENSPPYG00000001708) #32	MAN1C1 (ENSPPYG00000001707) #34	SELENON (ENSPPYG00000001706) #35	MTFR1L (ENSPPYG00000001704) #36	ENSPPYG00000001703 #37	PAQR7 (ENSPPYG00000001702)	ENSPPYG00000001700	PAFAH2 (ENSPPYG00000001699)
Gibbon	MODERN SPECIES	16	ELOA (ENSNLEG00000034092)	PITHD1 (ENSNLEG00000008633)	ENSNLEG00000008646	GALE (ENSNLEG00000008652) #7	HMGCL (ENSNLEG00000008664) #8	FUCA1 (ENSNLEG00000008750) #9	CNR2 (ENSNLEG00000008780) #10	MYOM3 (ENSNLEG00000008781) #13	IL22RA1 (ENSNLEG00000008862) #14	IFNLR1 (ENSNLEG00000008884) #15	GRHL3 (ENSNLEG00000008898) #16	STPG1 (ENSNLEG00000008905) #18	NIPAL3 (ENSNLEG00000008932) #19	RCAN3 (ENSNLEG00000008954) #20	NCMAP (ENSNLEG00000029897) #21	SRRM1 (ENSNLEG00000008966) #22	CLIC4 (ENSNLEG00000008997) #23	ENSNLEG00000027779 #24	SYF2 (ENSNLEG00000035185) #27	RSRP1 (ENSNLEG00000009046) #28	TMEM50A (ENSNLEG00000009061) #29	ENSNLEG00000009072 #30	MACO1 (ENSNLEG00000009076) #31	ENSNLEG00000009087 #32	MAN1C1 (ENSNLEG00000009094) #34	ENSNLEG00000032231 #35	MTFR1L (ENSNLEG00000009129) #36	AUNIP (ENSNLEG00000009148) #37	ENSNLEG00000009154	PAFAH2 (ENSNLEG00000009179)	EXTL1 (ENSNLEG00000009153)
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01050000246666	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT01100000267028	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.a ##23	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Cebidae	ANCESTRAL SPECIES	1	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01050000246666	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT01100000267028	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Cebidae_a	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01050000246666	ENSGT00910000147109	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT01100000267028	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.k #22	ENSGT00940000155017.y.b #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390.a #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT01030000234597.a.a	ENSGT00390000005233.a	ENSGT00940000161960
Capuchin	MODERN SPECIES	87	GALE (ENSCCAG00000016761) #7	HMGCL (ENSCCAG00000023261) #8	FUCA1 (ENSCCAG00000031239) #9	ENSCCAG00000037107	SRSF10 (ENSCCAG00000022497) #12	ENSCCAG00000037165	MYOM3 (ENSCCAG00000032018) #13	IL22RA1 (ENSCCAG00000030616) #14	ENSCCAG00000034363 #15	GRHL3 (ENSCCAG00000035318) #16	STPG1 (ENSCCAG00000021150) #18	NIPAL3 (ENSCCAG00000017894) #19	ENSCCAG00000034415	RCAN3 (ENSCCAG00000026460) #20	NCMAP (ENSCCAG00000018432) #21	SRRM1 (ENSCCAG00000029474) #22	CLIC4 (ENSCCAG00000022797) ##23	ENSCCAG00000020399	RUNX3 (ENSCCAG00000020981) #24	SYF2 (ENSCCAG00000022459) #27	RSRP1 (ENSCCAG00000033350) #28	TMEM50A (ENSCCAG00000028013) #29	ENSCCAG00000020865 #30	MACO1 (ENSCCAG00000030283) #31	LDLRAP1 (ENSCCAG00000026769) #32	MAN1C1 (ENSCCAG00000024764) #34	ENSCCAG00000031215 #35	MTFR1L (ENSCCAG00000012327) #36	AUNIP (ENSCCAG00000030698) #37	ENSCCAG00000028161	PAFAH2 (ENSCCAG00000024562)
Bolivian squirrel monkey	MODERN SPECIES	110	GALE (ENSSBOG00000014768) #7	HMGCL (ENSSBOG00000021529) #8	FUCA1 (ENSSBOG00000029265) #9	ENSSBOG00000032675	ENSSBOG00000031058	ENSSBOG00000025293	SRSF10 (ENSSBOG00000019550) #12	MYOM3 (ENSSBOG00000030502) #13	IL22RA1 (ENSSBOG00000033008) #14	IFNLR1 (ENSSBOG00000022222) #15	GRHL3 (ENSSBOG00000022621) #16	STPG1 (ENSSBOG00000032662) #18	NIPAL3 (ENSSBOG00000002152) #19	RCAN3 (ENSSBOG00000007870) #20	NCMAP (ENSSBOG00000031499) #21	SRRM1 (ENSSBOG00000019884) #22	CLIC4 (ENSSBOG00000021456) #23	RUNX3 (ENSSBOG00000019630) #24	SYF2 (ENSSBOG00000020184) #27	ENSSBOG00000024990 #28	TMEM50A (ENSSBOG00000034646) #29	ENSSBOG00000031589	ENSSBOG00000029967 #30	MACO1 (ENSSBOG00000034570) #31	LDLRAP1 (ENSSBOG00000035348) #32	MAN1C1 (ENSSBOG00000020850) #34	SELENON (ENSSBOG00000019034) #35	MTFR1L (ENSSBOG00000031796) #36	AUNIP (ENSSBOG00000032673) #37	STMN1 (ENSSBOG00000029102)	PAFAH2 (ENSSBOG00000024807)
Marmoset	MODERN SPECIES	19	FUCA1 (ENSCJAG00000020898) #9	CNR2 (ENSCJAG00000033442) #10	ENSCJAG00000079703	ENSCJAG00000042708	ENSCJAG00000074386 #11	ENSCJAG00000044116 #12	MYOM3 (ENSCJAG00000020880) #13	IL22RA1 (ENSCJAG00000020877) #14	IFNLR1 (ENSCJAG00000020867) #15	ENSCJAG00000085973	GRHL3 (ENSCJAG00000020858) #16	STPG1 (ENSCJAG00000020857) #18	NIPAL3 (ENSCJAG00000020848) #19	RCAN3 (ENSCJAG00000020838) #20	NCMAP (ENSCJAG00000042100) #21	SRRM1 (ENSCJAG00000020822) #22	ENSCJAG00000039482 ##23	ENSCJAG00000079913	RUNX3 (ENSCJAG00000077193) #24	SYF2 (ENSCJAG00000046570) #27	RSRP1 (ENSCJAG00000018568) #28	TMEM50A (ENSCJAG00000044784) #29	ENSCJAG00000018582 #30	MACO1 (ENSCJAG00000018625) #31	LDLRAP1 (ENSCJAG00000009366) #32	MAN1C1 (ENSCJAG00000009386) #34	SELENON (ENSCJAG00000040406) #35	MTFR1L (ENSCJAG00000055837) #36	AUNIP (ENSCJAG00000009447) #37	PAQR7 (ENSCJAG00000021977)	ENSCJAG00000009462
Mas night monkey	MODERN SPECIES	1281	GALE (ENSANAG00000030425) #7	HMGCL (ENSANAG00000023122) #8	FUCA1 (ENSANAG00000029483) #9	ENSANAG00000023498	ENSANAG00000027454	PNRC2 (ENSANAG00000014936) #11	ENSANAG00000033337 #12	MYOM3 (ENSANAG00000027483) #13	IL22RA1 (ENSANAG00000027615) #14	IFNLR1 (ENSANAG00000024019) #15	GRHL3 (ENSANAG00000024626) #16	STPG1 (ENSANAG00000027593) #18	NIPAL3 (ENSANAG00000037657) #19	RCAN3 (ENSANAG00000023505) #20	NCMAP (ENSANAG00000026874) #21	SRRM1 (ENSANAG00000035606) #22	ENSANAG00000036667 ##23	ENSANAG00000036988	ENSANAG00000032169	RUNX3 (ENSANAG00000030013) #24	ENSANAG00000031918	SYF2 (ENSANAG00000032473) #27	RSRP1 (ENSANAG00000028529) #28	ENSANAG00000032582 #29	ENSANAG00000031924 #30	MACO1 (ENSANAG00000024751) #31	LDLRAP1 (ENSANAG00000023810) #32	MAN1C1 (ENSANAG00000030308) #34	SELENON (ENSANAG00000020436) #35	MTFR1L (ENSANAG00000026966) #36	PAQR7 (ENSANAG00000037034)
Simiiformes	ANCESTRAL SPECIES																	ENSGT00730000111080.b.l ##22
Catarrhini	ANCESTRAL SPECIES																	ENSGT00730000111080.b.l ##22
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00730000111080.b.l ##22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00730000111080.b.l ##22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00730000111080.b.l ##22
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00730000111080.b.l ##22
Cercopithecinae_d	ANCESTRAL SPECIES	128	ENSGT00940000162721	ENSGT00890000139472.a.b	ENSGT00390000013647	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00940000156974	ENSGT00940000159516	ENSGT00390000009320	ENSGT00940000163347	ENSGT00940000155476.h	ENSGT00940000160788	ENSGT00940000153500.a.a.k.a.b	ENSGT00940000162539	ENSGT00730000111080.b.l ##22	ENSGT00940000153425.b	ENSGT01000000214719.a	ENSGT00940000158723	ENSGT01070000253816.a.b	ENSGT00530000063353.b	ENSGT00390000009902	ENSGT01100000263512.b.b.b	ENSGT00940000162744	ENSGT00950000182941.b.a	ENSGT00940000154833.s.a	ENSGT00940000153460.c.b	ENSGT00510000047104	ENSGT00390000016655.a.a.a.b.d.b	ENSGT00390000016655.a.a.a.b.d.a	ENSGT00390000016655.a.a.a.a
Sooty mangabey	MODERN SPECIES	191	MAGEC1 (ENSCATG00000039200)	ENSCATG00000042375	LDOC1 (ENSCATG00000022558)	ENSCATG00000033320	ENSCATG00000013059	SOX3 (ENSCATG00000022430)	ENSCATG00000022130	ATP11C (ENSCATG00000038949)	MCF2 (ENSCATG00000040103)	F9 (ENSCATG00000009239)	ENSCATG00000022228	ENSCATG00000044658	ENSCATG00000040102	ZIC3 (ENSCATG00000036569)	GPR101 (ENSCATG00000021853)	ENSCATG00000037524 ##22	ENSCATG00000045019	RBMX (ENSCATG00000034355)	ENSCATG00000040831	ARHGEF6 (ENSCATG00000026357)	CD40LG (ENSCATG00000036087)	VGLL1 (ENSCATG00000029711)	HTATSF1 (ENSCATG00000029963)	BRS3 (ENSCATG00000033877)	ADGRG4 (ENSCATG00000042569)	MAP7D3 (ENSCATG00000036480)	ENSCATG00000035367	SLC9A6 (ENSCATG00000030282)	MMGT1 (ENSCATG00000040138)	ENSCATG00000026275	SAGE1 (ENSCATG00000008610)
Drill	MODERN SPECIES	1142												ENSMLEG00000035106	ZIC3 (ENSMLEG00000004378)	ENSMLEG00000031538	GPR101 (ENSMLEG00000026912)	ENSMLEG00000032221 ##22	ENSMLEG00000028215	ENSMLEG00000021095	ENSMLEG00000020799	ARHGEF6 (ENSMLEG00000026561)	CD40LG (ENSMLEG00000042928)	VGLL1 (ENSMLEG00000040123)	HTATSF1 (ENSMLEG00000035511)	BRS3 (ENSMLEG00000034212)	ADGRG4 (ENSMLEG00000029336)	MAP7D3 (ENSMLEG00000028761)	ENSMLEG00000006125
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00730000111080.b.l ##22
Golden snub-nosed monkey	MODERN SPECIES	771																ENSRROG00000041543 ##22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00730000111080.b.l ##22
Gibbon	MODERN SPECIES	449	ENSNLEG00000032077	ENSNLEG00000001381	LDOC1 (ENSNLEG00000002160)	ENSNLEG00000034744	SOX3 (ENSNLEG00000018830)	ENSNLEG00000027108	CXorf66 (ENSNLEG00000003353)	ATP11C (ENSNLEG00000003317)	MCF2 (ENSNLEG00000003068)	F9 (ENSNLEG00000003035)	ENSNLEG00000032994	ENSNLEG00000003011	ENSNLEG00000003005	ENSNLEG00000032935	GPR101 (ENSNLEG00000018828)	ENSNLEG00000031294 ##22	RBMX (ENSNLEG00000002964)	ENSNLEG00000035535	ARHGEF6 (ENSNLEG00000002838)	CD40LG (ENSNLEG00000002818)	VGLL1 (ENSNLEG00000002785)	HTATSF1 (ENSNLEG00000002746)	BRS3 (ENSNLEG00000002740)	ADGRG4 (ENSNLEG00000002681)	ENSNLEG00000035956	MAP7D3 (ENSNLEG00000002667)	ENSNLEG00000002560	SLC9A6 (ENSNLEG00000002336)	MMGT1 (ENSNLEG00000002320)	ENSNLEG00000002303	SAGE1 (ENSNLEG00000002235)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00730000111080.b.l ##22
Cebidae	ANCESTRAL SPECIES																	ENSGT00730000111080.b.l ##22
Marmoset	MODERN SPECIES	5	ENSCJAG00000047273	ENSCJAG00000074175	ENSCJAG00000047176	ENSCJAG00000048625	CHAC2 (ENSCJAG00000061560)	ASB3 (ENSCJAG00000010478)	ERLEC1 (ENSCJAG00000010521)	PSME4 (ENSCJAG00000010300)	ENSCJAG00000087191	TSPYL6 (ENSCJAG00000063293)	ENSCJAG00000010291	C2orf73 (ENSCJAG00000063846)	SPTBN1 (ENSCJAG00000010149)	EML6 (ENSCJAG00000010107)	RTN4 (ENSCJAG00000010079)	ENSCJAG00000056364 ##22	ENSCJAG00000073881	ENSCJAG00000083544	CLHC1 (ENSCJAG00000010057)	ENSCJAG00000010052	MTIF2 (ENSCJAG00000010030)	ENSCJAG00000022366	CCDC88A (ENSCJAG00000009891)	CFAP36 (ENSCJAG00000009868)	PPP4R3B (ENSCJAG00000009837)	PNPT1 (ENSCJAG00000009740)	EFEMP1 (ENSCJAG00000009690)	CCDC85A (ENSCJAG00000009663)	ENSCJAG00000058631	ENSCJAG00000079387	VRK2 (ENSCJAG00000009299)
Tarsier	MODERN SPECIES	5134	LYPLA2 (ENSTSYG00000028185)	GALE (ENSTSYG00000005706) #7	HMGCL (ENSTSYG00000000974) #8	FUCA1 (ENSTSYG00000002869) #9	ENSTSYG00000034899	SRSF10 (ENSTSYG00000009439) #12	MYOM3 (ENSTSYG00000012229) #13	IL22RA1 (ENSTSYG00000012304) #14	ENSTSYG00000035519	IFNLR1 (ENSTSYG00000012308) #15	GRHL3 (ENSTSYG00000006693) #16	STPG1 (ENSTSYG00000006713) #18	NIPAL3 (ENSTSYG00000012503) #19	RCAN3 (ENSTSYG00000007638) #20	NCMAP (ENSTSYG00000011530) #21	SRRM1 (ENSTSYG00000006782) #22
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01100000263986	ENSGT00530000063881.a.b.i #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01100000263986	ENSGT00530000063881.a.b.i #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Mouse lemur	MODERN SPECIES	11	GALE (ENSMICG00000005846) #7	HMGCL (ENSMICG00000005852) #8	FUCA1 (ENSMICG00000007213) #9	ENSMICG00000033155	ENSMICG00000033993	ENSMICG00000029165	ENSMICG00000047638 #12	MYOM3 (ENSMICG00000000527) #13	IL22RA1 (ENSMICG00000043393) #14	IFNLR1 (ENSMICG00000035775) #15	GRHL3 (ENSMICG00000000542) #16	STPG1 (ENSMICG00000000545) #18	NIPAL3 (ENSMICG00000034277) #19	RCAN3 (ENSMICG00000038019) #20	ENSMICG00000006550	SRRM1 (ENSMICG00000006553) #22	CLIC4 (ENSMICG00000038442) #23	RUNX3 (ENSMICG00000035257) #24	SYF2 (ENSMICG00000016191) #27	RSRP1 (ENSMICG00000016214) #28	TMEM50A (ENSMICG00000016225) #29	ENSMICG00000016235 #30	MACO1 (ENSMICG00000016248) #31	LDLRAP1 (ENSMICG00000047758) #32	MAN1C1 (ENSMICG00000012135) #34	ENSMICG00000012147 #35	ENSMICG00000035407 #35	MTFR1L (ENSMICG00000012175) #36	ENSMICG00000001965	AUNIP (ENSMICG00000028919) #37	STMN1 (ENSMICG00000010225)
Lemuriformes_a	ANCESTRAL SPECIES	7	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01100000263986	ENSGT00530000063881.a.b.i #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Greater bamboo lemur	MODERN SPECIES	278	GALE (ENSPSMG00000013302) #7	HMGCL (ENSPSMG00000013254) #8	FUCA1 (ENSPSMG00000013214) #9	CNR2 (ENSPSMG00000013198) #10	ENSPSMG00000013194	ENSPSMG00000013190 #11	SRSF10 (ENSPSMG00000013179) #12	MYOM3 (ENSPSMG00000013152) #13	IL22RA1 (ENSPSMG00000013103) #14	ENSPSMG00000013097 #15	GRHL3 (ENSPSMG00000013080) #16	STPG1 (ENSPSMG00000013046) #18	NIPAL3 (ENSPSMG00000013021) #19	RCAN3 (ENSPSMG00000012990) #20	NCMAP (ENSPSMG00000012955) #21	SRRM1 (ENSPSMG00000012843) #22	CLIC4 (ENSPSMG00000012750) #23	RUNX3 (ENSPSMG00000012742) #24	SYF2 (ENSPSMG00000012731) #27	RSRP1 (ENSPSMG00000012723) #28	TMEM50A (ENSPSMG00000012713) #29	ENSPSMG00000012560 #30	MACO1 (ENSPSMG00000012398) #31	LDLRAP1 (ENSPSMG00000012341) #32	MAN1C1 (ENSPSMG00000012288) #34	SELENON (ENSPSMG00000012249) #35	MTFR1L (ENSPSMG00000012241) #36	AUNIP (ENSPSMG00000012224) #37	PAQR7 (ENSPSMG00000012218)	STMN1 (ENSPSMG00000012209)	PAFAH2 (ENSPSMG00000012192)
Coquerels sifaka	MODERN SPECIES	481	PITHD1 (ENSPCOG00000013971)	ENSPCOG00000025740	GALE (ENSPCOG00000013051) #7	HMGCL (ENSPCOG00000016623) #8	FUCA1 (ENSPCOG00000015161) #9	ENSPCOG00000018607	SRSF10 (ENSPCOG00000022379) #12	MYOM3 (ENSPCOG00000021576) #13	IL22RA1 (ENSPCOG00000012770) #14	ENSPCOG00000020307 #15	GRHL3 (ENSPCOG00000023099) #16	STPG1 (ENSPCOG00000024230) #18	NIPAL3 (ENSPCOG00000019697) #19	ENSPCOG00000016756 #20	NCMAP (ENSPCOG00000015619) #21	SRRM1 (ENSPCOG00000021311) #22	CLIC4 (ENSPCOG00000016950) #23	RUNX3 (ENSPCOG00000023993) #24
Bushbaby	MODERN SPECIES	271	LYPLA2 (ENSOGAG00000032260)	GALE (ENSOGAG00000009375) #7	HMGCL (ENSOGAG00000009381) #8	FUCA1 (ENSOGAG00000009383) #9	CNR2 (ENSOGAG00000011818) #10	PNRC2 (ENSOGAG00000024747) #11	SRSF10 (ENSOGAG00000015374) #12	MYOM3 (ENSOGAG00000010702) #13	IL22RA1 (ENSOGAG00000024442) #14	ENSOGAG00000010712 #15	GRHL3 (ENSOGAG00000011027) #16	STPG1 (ENSOGAG00000011033) #18	NIPAL3 (ENSOGAG00000011036) #19	RCAN3 (ENSOGAG00000015460) #20	NCMAP (ENSOGAG00000008361) #21	SRRM1 (ENSOGAG00000010210) #22	ENSOGAG00000030641	ENSOGAG00000025062	CLIC4 (ENSOGAG00000014620) #23	RUNX3 (ENSOGAG00000025633) #24	SYF2 (ENSOGAG00000009962) #27	RSRP1 (ENSOGAG00000011942) #28	TMEM50A (ENSOGAG00000028512) #29	ENSOGAG00000011983 #30	MACO1 (ENSOGAG00000033230) #31	LDLRAP1 (ENSOGAG00000002101) #32	MAN1C1 (ENSOGAG00000002102) #34	ENSOGAG00000024972 #35	MTFR1L (ENSOGAG00000002104) #36	AUNIP (ENSOGAG00000034108) #37	PAQR7 (ENSOGAG00000024814)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Tree shrew	MODERN SPECIES	7692															NCMAP (ENSTBEG00000000111) #21	SRRM1 (ENSTBEG00000000100) #22
Glires	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Rodentia	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017.w.a #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Marmotini	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017.w.a.a #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.v	ENSGT00390000005233.a
Marmotini_b	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017.w.a.a #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.v	ENSGT00390000005233.a
Squirrel	MODERN SPECIES	74	LYPLA2 (ENSSTOG00000011918)	GALE (ENSSTOG00000011927) #7	HMGCL (ENSSTOG00000011933) #8	FUCA1 (ENSSTOG00000011938) #9	CNR2 (ENSSTOG00000011946) #10	PNRC2 (ENSSTOG00000000953) #11	SRSF10 (ENSSTOG00000000956) #12	MYOM3 (ENSSTOG00000000934) #13	IL22RA1 (ENSSTOG00000001510) #14	IFNLR1 (ENSSTOG00000022523) #15	GRHL3 (ENSSTOG00000023529) #16	STPG1 (ENSSTOG00000020596) #18	NIPAL3 (ENSSTOG00000002868) #19	RCAN3 (ENSSTOG00000002884) #20	NCMAP (ENSSTOG00000014647) #21	SRRM1 (ENSSTOG00000014640) #22	ENSSTOG00000002184 #23	RUNX3 (ENSSTOG00000022471) #24	SYF2 (ENSSTOG00000023984) #27	TMEM50A (ENSSTOG00000022246) #29	ENSSTOG00000013643 #30	MACO1 (ENSSTOG00000013650) #31	LDLRAP1 (ENSSTOG00000019764) #32	ENSSTOG00000034000 #34	SELENON (ENSSTOG00000032252) #35	MTFR1L (ENSSTOG00000023300) #36	AUNIP (ENSSTOG00000003781) #37	PAQR7 (ENSSTOG00000003791)	ENSSTOG00000021708	PAFAH2 (ENSSTOG00000002899)	EXTL1 (ENSSTOG00000022136)
Arctic ground squirrel	MODERN SPECIES	92																SRRM1 (ENSUPAG00010021790) #22	ENSUPAG00010021786 #23	RUNX3 (ENSUPAG00010021783) #24	SYF2 (ENSUPAG00010021777) #27	RSRP1 (ENSUPAG00010021775) #28	TMEM50A (ENSUPAG00010021773) #29	ENSUPAG00010021772 #30	MACO1 (ENSUPAG00010021769) #31	MAN1C1 (ENSUPAG00010021756) #34	SELENON (ENSUPAG00010021750) #35	MTFR1L (ENSUPAG00010021746) #36	AUNIP (ENSUPAG00010021743) #37	PAQR7 (ENSUPAG00010021741)	ENSUPAG00010021739	PAFAH2 (ENSUPAG00010021733)	EXTL1 (ENSUPAG00010021721)
Alpin marmot	MODERN SPECIES	15	GALE (ENSMMMG00000018757) #7	HMGCL (ENSMMMG00000018659) #8	FUCA1 (ENSMMMG00000018637) #9	CNR2 (ENSMMMG00000018629) #10	ENSMMMG00000018624	PNRC2 (ENSMMMG00000018622) #11	SRSF10 (ENSMMMG00000018592) #12	MYOM3 (ENSMMMG00000018557) #13	IL22RA1 (ENSMMMG00000018545) #14	IFNLR1 (ENSMMMG00000018513) #15	GRHL3 (ENSMMMG00000018480) #16	STPG1 (ENSMMMG00000018472) #18	NIPAL3 (ENSMMMG00000018457) #19	RCAN3 (ENSMMMG00000018455) #20	NCMAP (ENSMMMG00000018395) #21	SRRM1 (ENSMMMG00000018360) #22	CLIC4 (ENSMMMG00000018318) #23	ENSMMMG00000018312	ENSMMMG00000018294 #24	SYF2 (ENSMMMG00000018261) #27	RSRP1 (ENSMMMG00000018254) #28	TMEM50A (ENSMMMG00000018240) #29	ENSMMMG00000015263 #30	MACO1 (ENSMMMG00000015231) #31	LDLRAP1 (ENSMMMG00000015218) #32	MAN1C1 (ENSMMMG00000014472) #34	ENSMMMG00000014449 #35	ENSMMMG00000014442 #35	MTFR1L (ENSMMMG00000014427) #36	AUNIP (ENSMMMG00000014413) #37	PAQR7 (ENSMMMG00000014408)
Eurasian red squirrel	MODERN SPECIES		HMGCL (ENSSVLG00005000529) #8	FUCA1 (ENSSVLG00005000561) #9	CNR2 (ENSSVLG00005000589) #10	ENSSVLG00005000604	PNRC2 (ENSSVLG00005000620) #11	SRSF10 (ENSSVLG00005000670) #12	ENSSVLG00005000730	MYOM3 (ENSSVLG00005000787) #13	IL22RA1 (ENSSVLG00005000877) #14	IFNLR1 (ENSSVLG00005000894) #15	GRHL3 (ENSSVLG00005000932) #16	STPG1 (ENSSVLG00005001000) #18	NIPAL3 (ENSSVLG00005001037) #19	RCAN3 (ENSSVLG00005001080) #20	NCMAP (ENSSVLG00005001114) #21	SRRM1 (ENSSVLG00005001180) #22	ENSSVLG00005001230 #23	RUNX3 (ENSSVLG00005001263) #24	SYF2 (ENSSVLG00005001292) #27	RSRP1 (ENSSVLG00005001313) #28	TMEM50A (ENSSVLG00005001335) #29	ENSSVLG00005001369 #30	MACO1 (ENSSVLG00005001436) #31	LDLRAP1 (ENSSVLG00005001468) #32	MAN1C1 (ENSSVLG00005001513) #34	ENSSVLG00005001587 #35	MTFR1L (ENSSVLG00005001597) #36	AUNIP (ENSSVLG00005001627) #37	PAQR7 (ENSSVLG00005001646)	STMN1 (ENSSVLG00005001664)	PAFAH2 (ENSSVLG00005001686)
Hystricomorpha	DUPLICATION
Hystricomorpha	DUPLICATION
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450.lc #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.m.a #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450.lc #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.m.a #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Hystricomorpha_b	ANCESTRAL SPECIES	7	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450.lc #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.m.a #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Degu	DUPLICATION
Degu	MODERN SPECIES	133	PITHD1 (ENSODEG00000015391)	ENSODEG00000014635	GALE (ENSODEG00000015082) #7	HMGCL (ENSODEG00000014361) #8	FUCA1 (ENSODEG00000013698) #9	CNR2 (ENSODEG00000014788) #10	ENSODEG00000020207	MYOM3 (ENSODEG00000014259) #13	IL22RA1 (ENSODEG00000015339) #14	IFNLR1 (ENSODEG00000014258) #15	GRHL3 (ENSODEG00000014148) #16	STPG1 (ENSODEG00000014432) #18	NIPAL3 (ENSODEG00000015480) #19	RCAN3 (ENSODEG00000014403) #20	NCMAP (ENSODEG00000014196) #21	ENSODEG00000013381 #22	ENSODEG00000014994	CLIC4 (ENSODEG00000015014) #23	RUNX3 (ENSODEG00000013557) #24	ENSODEG00000020175	ENSODEG00000014338 #27	RSRP1 (ENSODEG00000014609) #28	ENSODEG00000014039 #29	ENSODEG00000013632 #30	MACO1 (ENSODEG00000014747) #31	LDLRAP1 (ENSODEG00000013216) #32	MAN1C1 (ENSODEG00000013579) #34	SELENON (ENSODEG00000014831) #35	MTFR1L (ENSODEG00000013501) #36	AUNIP (ENSODEG00000013714) #37	PAQR7 (ENSODEG00000020104)
Degu	MODERN SPECIES	93	KANSL3 (ENSODEG00000009383)	ENSODEG00000006964	FER1L5 (ENSODEG00000007379)	LMAN2L (ENSODEG00000007336)	CNNM4 (ENSODEG00000008343)	ENSODEG00000007080	ANKRD23 (ENSODEG00000007390)	ANKRD39 (ENSODEG00000008651)	SEMA4C (ENSODEG00000007356)	ENSODEG00000007357	ACTR1B (ENSODEG00000006779)	ZAP70 (ENSODEG00000008410)	ENSODEG00000008642	ENSODEG00000007216	ENSODEG00000006553	ENSODEG00000007221 #22	ENSODEG00000006920	ENSODEG00000007778	CNGA3 (ENSODEG00000008323)	INPP4A (ENSODEG00000007690)	COA5 (ENSODEG00000007739)	UNC50 (ENSODEG00000008280)	ENSODEG00000006992	ENSODEG00000007837	TSGA10 (ENSODEG00000008545)	LIPT1 (ENSODEG00000019699)	ENSODEG00000010546	LYG2 (ENSODEG00000010732)	LYG1 (ENSODEG00000009277)	ENSODEG00000019509	ENSODEG00000008190
Long-tailed chinchilla	MODERN SPECIES	159	LYPLA2 (ENSCLAG00000010904)	GALE (ENSCLAG00000011611) #7	HMGCL (ENSCLAG00000013961) #8	FUCA1 (ENSCLAG00000013057) #9	CNR2 (ENSCLAG00000014048) #10	ENSCLAG00000014105 #11	ENSCLAG00000015555 #12	MYOM3 (ENSCLAG00000014590) #13	IL22RA1 (ENSCLAG00000014220) #14	IFNLR1 (ENSCLAG00000011350) #15	GRHL3 (ENSCLAG00000011858) #16	STPG1 (ENSCLAG00000010905) #18	NIPAL3 (ENSCLAG00000008287) #19	RCAN3 (ENSCLAG00000008751) #20	NCMAP (ENSCLAG00000009955) #21	SRRM1 (ENSCLAG00000014592) #22	CLIC4 (ENSCLAG00000007919) #23	RUNX3 (ENSCLAG00000010119) #24	SYF2 (ENSCLAG00000008474) #27	ENSCLAG00000008988 #28	ENSCLAG00000009626 #29	ENSCLAG00000010154 #30	MACO1 (ENSCLAG00000010148) #31	LDLRAP1 (ENSCLAG00000013635) #32	MAN1C1 (ENSCLAG00000013310) #34	SELENON (ENSCLAG00000009093) #35	MTFR1L (ENSCLAG00000012749) #36	AUNIP (ENSCLAG00000014153) #37	PAQR7 (ENSCLAG00000017977)	STMN1 (ENSCLAG00000014558)	PAFAH2 (ENSCLAG00000010400)
Guinea pig	MODERN SPECIES	25	LYPLA2 (ENSCPOG00000033750)	GALE (ENSCPOG00000031845) #7	HMGCL (ENSCPOG00000008645) #8	FUCA1 (ENSCPOG00000003535) #9	CNR2 (ENSCPOG00000003537) #10	PNRC2 (ENSCPOG00000037509) #11	SRSF10 (ENSCPOG00000034102) #12	MYOM3 (ENSCPOG00000008018) #13	IL22RA1 (ENSCPOG00000024764) #14	IFNLR1 (ENSCPOG00000034175) #15	GRHL3 (ENSCPOG00000008841) #16	STPG1 (ENSCPOG00000008857) #18	NIPAL3 (ENSCPOG00000032188) #19	RCAN3 (ENSCPOG00000003363) #20	NCMAP (ENSCPOG00000037048) #21	SRRM1 (ENSCPOG00000015594) #22	CLIC4 (ENSCPOG00000038478) #23	RUNX3 (ENSCPOG00000038589) #24	SYF2 (ENSCPOG00000005326) #27	RSRP1 (ENSCPOG00000014651) #28	TMEM50A (ENSCPOG00000033045) #29	ENSCPOG00000020328 #30	MACO1 (ENSCPOG00000012618) #31	LDLRAP1 (ENSCPOG00000038658) #32	MAN1C1 (ENSCPOG00000012627) #34	SELENON (ENSCPOG00000030792) #35	MTFR1L (ENSCPOG00000030432) #36	AUNIP (ENSCPOG00000026702) #37	PAQR7 (ENSCPOG00000038910)	STMN1 (ENSCPOG00000035267)	PAFAH2 (ENSCPOG00000003472)
Naked mole-rat female	MODERN SPECIES	26	FUCA1 (ENSHGLG00000011473) #9	CNR2 (ENSHGLG00000042644) #10	PNRC2 (ENSHGLG00000044854) #11	SRSF10 (ENSHGLG00000046721) #12	ENSHGLG00000033166	MYOM3 (ENSHGLG00000012080) #13	IL22RA1 (ENSHGLG00000013047) #14	IFNLR1 (ENSHGLG00000048210) #15	ENSHGLG00000032213	GRHL3 (ENSHGLG00000012928) #16	STPG1 (ENSHGLG00000009919) #18	NIPAL3 (ENSHGLG00000047881) #19	RCAN3 (ENSHGLG00000010305) #20	ENSHGLG00000045032 #21	ENSHGLG00000037226	ENSHGLG00000017105 #22	ENSHGLG00000050374 #23	RUNX3 (ENSHGLG00000043838) #24	ENSHGLG00000045581	SYF2 (ENSHGLG00000044606) #27	TMEM50A (ENSHGLG00000017064) #29	ENSHGLG00000010472 #30	MACO1 (ENSHGLG00000010882) #31	LDLRAP1 (ENSHGLG00000012177) #32	MAN1C1 (ENSHGLG00000043962) #34	SELENON (ENSHGLG00000010947) #35	MTFR1L (ENSHGLG00000017097) #36	AUNIP (ENSHGLG00000035083) #37	PAQR7 (ENSHGLG00000012421)	ENSHGLG00000012564	ENSHGLG00000014002
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00730000111080.b.m.b #22
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000011602	ENSHGLG00000043091	ENSHGLG00000012034	ENSHGLG00000012179	ENSHGLG00000012324	SUCNR1 (ENSHGLG00000012430)	ENSHGLG00000045627	ENSHGLG00000032291	MBNL1 (ENSHGLG00000012911)	P2RY1 (ENSHGLG00000012962)	ENSHGLG00000013739	RAP2B (ENSHGLG00000032240)	ARHGEF26 (ENSHGLG00000017391)	DHX36 (ENSHGLG00000017407)	GPR149 (ENSHGLG00000013607)	ENSHGLG00000042929 #22	ENSHGLG00000049890	ENSHGLG00000039740	ENSHGLG00000041038	MME (ENSHGLG00000013970)	ENSHGLG00000035877	PLCH1 (ENSHGLG00000017434)	ENSHGLG00000019192	SLC33A1 (ENSHGLG00000042989)	ENSHGLG00000019482	ENSHGLG00000019405	ENSHGLG00000039018	KCNAB1 (ENSHGLG00000019332)	SSR3 (ENSHGLG00000037144)	ENSHGLG00000020605	ENSHGLG00000010960
Hystricomorpha	ANCESTRAL SPECIES	162																ENSGT00730000111080.b.n #22	ENSGT00910000148394
Naked mole-rat female	MODERN SPECIES	20	ZNF565 (ENSHGLG00000011257)	ENSHGLG00000011608	ENSHGLG00000017642	ENSHGLG00000014291	ENSHGLG00000048732	ENSHGLG00000044190	ZNF260 (ENSHGLG00000018250)	ZNF566 (ENSHGLG00000043971)	ENSHGLG00000017623	ENSHGLG00000015653	ENSHGLG00000014373	ENSHGLG00000050918	ENSHGLG00000048522	ZNF570 (ENSHGLG00000035445)	ZNF569 (ENSHGLG00000015479)	ENSHGLG00000021151 #22	ENSHGLG00000036251	ZNF527 (ENSHGLG00000014344)	ZNF383 (ENSHGLG00000035360)	ENSHGLG00000014546	ENSHGLG00000014646	ENSHGLG00000046953	ENSHGLG00000014176	ENSHGLG00000035688	ENSHGLG00000042254	ENSHGLG00000039259	ENSHGLG00000050653	ENSHGLG00000050735	ENSHGLG00000049196	ENSHGLG00000044662	ENSHGLG00000014474
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00730000111080.b.n #22
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00730000111080.b.n #22
Degu	DUPLICATION
Degu	MODERN SPECIES	175	SLC26A7 (ENSODEG00000005374)	RUNX1T1 (ENSODEG00000005303)	TRIQK (ENSODEG00000005257)	CIBAR1 (ENSODEG00000005214)	RBM12B (ENSODEG00000019204)	TMEM67 (ENSODEG00000005116)	PDP1 (ENSODEG00000005061)	CDH17 (ENSODEG00000004993)	ENSODEG00000004970	GEM (ENSODEG00000004933)	ENSODEG00000018916	ENSODEG00000018878	ENSODEG00000002650	ENSODEG00000018816	VIRMA (ENSODEG00000002449)	ENSODEG00000002361 #22	ESRP1 (ENSODEG00000002165)	DPY19L4 (ENSODEG00000003026)	ENSODEG00000018890	INTS8 (ENSODEG00000002766)	ENSODEG00000002694	TP53INP1 (ENSODEG00000002683)	ENSODEG00000002658 #12	ENSODEG00000002493	NDUFAF6 (ENSODEG00000002477)	ENSODEG00000002462	CFAP418 (ENSODEG00000002430)	GDF6 (ENSODEG00000002393)	MTERF3 (ENSODEG00000002232)	PTDSS1 (ENSODEG00000004210)	SDC2 (ENSODEG00000004200)
Degu	MODERN SPECIES	63	RRAGD (ENSODEG00000007559)	UBE2J1 (ENSODEG00000009168)	GABRR2 (ENSODEG00000007212)	ENSODEG00000019483	GABRR1 (ENSODEG00000008074)	PM20D2 (ENSODEG00000008228)	SRSF12 (ENSODEG00000009174)	ENSODEG00000007177 ##11	ENSODEG00000019379	RNGTT (ENSODEG00000007302)	ENSODEG00000019444	ENSODEG00000007826	CNR1 (ENSODEG00000008433) ##10	ENSODEG00000019610	SPACA1 (ENSODEG00000009288)	ENSODEG00000019473 #22	ENSODEG00000019522	AKIRIN2 (ENSODEG00000008203)	ORC3 (ENSODEG00000008073)	RARS2 (ENSODEG00000007822)	SLC35A1 (ENSODEG00000009238)	CFAP206 (ENSODEG00000007616)	ENSODEG00000008775	ENSODEG00000009562	C6orf163 (ENSODEG00000010057)	SMIM8 (ENSODEG00000007885)	ZNF292 (ENSODEG00000007524)	ENSODEG00000011652	Cga (ENSODEG00000009510)	HTR1E (ENSODEG00000019516)	ENSODEG00000019529
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT01080000259389	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Kangaroo rat	MODERN SPECIES	325	Lypla2 (ENSDORG00000011120)	Gale (ENSDORG00000011121) #7	Hmgcl (ENSDORG00000011123) #8	Fuca1 (ENSDORG00000000643) #9	Cnr2 (ENSDORG00000025264) #10	Pnrc2 (ENSDORG00000009138) #11	Srsf10 (ENSDORG00000024574) #12	Myom3 (ENSDORG00000013358) #13	Il22ra1 (ENSDORG00000029927) #14	Ifnlr1 (ENSDORG00000029083) #15	Grhl3 (ENSDORG00000001381) #16	Stpg1 (ENSDORG00000012246) #18	Nipal3 (ENSDORG00000015286) #19	Rcan3 (ENSDORG00000007662) #20	ENSDORG00000002716	ENSDORG00000028601 #22	Clic4 (ENSDORG00000008730) #23	Runx3 (ENSDORG00000024774) #24	Syf2 (ENSDORG00000001274) #27	Rsrp1 (ENSDORG00000025796) #28	Tmem50a (ENSDORG00000013839) #29	Rhd (ENSDORG00000013842) #30	Maco1 (ENSDORG00000000638) #31	Ldlrap1 (ENSDORG00000000640) #32	Man1c1 (ENSDORG00000013005) #34	Selenon (ENSDORG00000004349) #35	Mtfr1l (ENSDORG00000010828) #36	Aunip (ENSDORG00000010829) #37	Paqr7 (ENSDORG00000004272)	ENSDORG00000001797	Pafah2 (ENSDORG00000003820)
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Muroidea	ANCESTRAL SPECIES	3	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017.t #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017.t #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	111	Gale (ENSCGRG00001004708) #7	Hmgcl (ENSCGRG00001008106) #8	Fuca1 (ENSCGRG00001023492) #9	Cnr2 (ENSCGRG00001001683) #10	ENSCGRG00001014818	Pnrc2 (ENSCGRG00001012333) #11	Srsf10 (ENSCGRG00001017946) #12	Myom3 (ENSCGRG00001025061) #13	Il22ra1 (ENSCGRG00001016910) #14	Ifnlr1 (ENSCGRG00001021656) #15	Grhl3 (ENSCGRG00001012724) #16	Stpg1 (ENSCGRG00001019578) #18	Nipal3 (ENSCGRG00001009567) #19	Rcan3 (ENSCGRG00001021122) #20	Ncmap (ENSCGRG00001023666) #21	ENSCGRG00001014174 #22	Clic4 (ENSCGRG00001015756) #23	Runx3 (ENSCGRG00001017975) #24	Syf2 (ENSCGRG00001020733) #27	Rsrp1 (ENSCGRG00001024049) #28	ENSCGRG00001024623 #29	Rhd (ENSCGRG00001014832) #30	Maco1 (ENSCGRG00001024942) #31	Ldlrap1 (ENSCGRG00001003725) #32	Man1c1 (ENSCGRG00001009664) #34	Selenon (ENSCGRG00001024285) #35	Mtfr1l (ENSCGRG00001011875) #36	Aunip (ENSCGRG00001017106) #37	Paqr7 (ENSCGRG00001002911)	Stmn1 (ENSCGRG00001019131)	Pafah2 (ENSCGRG00001024932)
Chinese hamster chok1gshd	MODERN SPECIES	111	ENSCGRG00001006905	ENSCGRG00001006765	ENSCGRG00001005704	ENSCGRG00001009627	ENSCGRG00001009477	ENSCGRG00001006253	ENSCGRG00001005821	ENSCGRG00001007528	ENSCGRG00001005639	Ifne (ENSCGRG00001006683)	ENSCGRG00001020377	ENSCGRG00001019783	ENSCGRG00001016483	Cdkn2b (ENSCGRG00001014610)	Dmrta1 (ENSCGRG00001014289)	ENSCGRG00001013517 #22	ENSCGRG00001012785	Elavl2 (ENSCGRG00001024409)	Izumo3 (ENSCGRG00001023060)	ENSCGRG00001019319	Tusc1 (ENSCGRG00001012163)	Caap1 (ENSCGRG00001016530)	ENSCGRG00001008077	Plaa (ENSCGRG00001024275)	Lrrc19 (ENSCGRG00001023151)	Ift74 (ENSCGRG00001020714)	Tek (ENSCGRG00001018441)	Eqtn (ENSCGRG00001001186)	Mysm1 (ENSCGRG00001015762)	Jun (ENSCGRG00001011810)	Fggy (ENSCGRG00001024005)
Golden Hamster	MODERN SPECIES	709			Lypla2 (ENSMAUG00000015204)	Gale (ENSMAUG00000016163) #7	Cnr2 (ENSMAUG00000009347) #10	ENSMAUG00000020799	Srsf10 (ENSMAUG00000019452) #12	Myom3 (ENSMAUG00000011597) #13	Il22ra1 (ENSMAUG00000022084) #14	Ifnlr1 (ENSMAUG00000009183) #15	Grhl3 (ENSMAUG00000000979) #16	Stpg1 (ENSMAUG00000012732) #18	Nipal3 (ENSMAUG00000021437) #19	Rcan3 (ENSMAUG00000002939) #20	Ncmap (ENSMAUG00000014750) #21	Srrm1 (ENSMAUG00000015705) #22	Clic4 (ENSMAUG00000016358) #23	Runx3 (ENSMAUG00000010386) #24	Syf2 (ENSMAUG00000018974) #27	Rsrp1 (ENSMAUG00000021410) #28	Tmem50a (ENSMAUG00000018026) #29	Rhd (ENSMAUG00000010533) #30	Maco1 (ENSMAUG00000014109) #31	Ldlrap1 (ENSMAUG00000018853) #32	Man1c1 (ENSMAUG00000018414) #34	Mtfr1l (ENSMAUG00000006161) #36	Aunip (ENSMAUG00000015763) #37	Paqr7 (ENSMAUG00000009753)	Stmn1 (ENSMAUG00000011932)	Pafah2 (ENSMAUG00000009805)	Extl1 (ENSMAUG00000012590)
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017.t #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	11	Hmgcl (ENSPEMG00000012287) #8	Fuca1 (ENSPEMG00000012408) #9	Cnr2 (ENSPEMG00000029166) #10	ENSPEMG00000026104	Pnrc2 (ENSPEMG00000029931) #11	Srsf10 (ENSPEMG00000025144) #12	ENSPEMG00000018087	Myom3 (ENSPEMG00000003240) #13	Il22ra1 (ENSPEMG00000002020) #14	Ifnlr1 (ENSPEMG00000015999) #15	Grhl3 (ENSPEMG00000010574) #16	Stpg1 (ENSPEMG00000009528) #18	Nipal3 (ENSPEMG00000018226) #19	Rcan3 (ENSPEMG00000004682) #20	Ncmap (ENSPEMG00000018334) #21	ENSPEMG00000006254 #22	Clic4 (ENSPEMG00000020345) #23	Runx3 (ENSPEMG00000010606) #24	Syf2 (ENSPEMG00000008283) #27	Rsrp1 (ENSPEMG00000001612) #28	Tmem50a (ENSPEMG00000000635) #29	Rhd (ENSPEMG00000017512) #30	Maco1 (ENSPEMG00000018069) #31	Ldlrap1 (ENSPEMG00000016859) #32	Man1c1 (ENSPEMG00000011993) #34	Selenon (ENSPEMG00000021064) #35	Mtfr1l (ENSPEMG00000020917) #36	Aunip (ENSPEMG00000020908) #37	Paqr7 (ENSPEMG00000031192)	ENSPEMG00000020535	Pafah2 (ENSPEMG00000012512)
Northern American deer mouse	MODERN SPECIES	15	Ubl3 (ENSPEMG00000010779)	Katnal1 (ENSPEMG00000009164)	ENSPEMG00000000834	Uspl1 (ENSPEMG00000003660)	Alox5ap (ENSPEMG00000000576)	Medag (ENSPEMG00000000331)	Tex26 (ENSPEMG00000019024)	Wdr95 (ENSPEMG00000016428)	Hsph1 (ENSPEMG00000009941)	ENSPEMG00000025164	B3glct (ENSPEMG00000015898)	Rxfp2 (ENSPEMG00000018554)	ENSPEMG00000026224	ENSPEMG00000031372	ENSPEMG00000029204	ENSPEMG00000030363 #22	ENSPEMG00000011222	Zkscan5 (ENSPEMG00000010963)	Zkscan14 (ENSPEMG00000011797)	Atp5j2 (ENSPEMG00000013672)	Cpsf4 (ENSPEMG00000004508)	Ptcd1 (ENSPEMG00000013736)	Bud31 (ENSPEMG00000010947)	ENSPEMG00000015747	Arpc1b (ENSPEMG00000017147)	Arpc1a (ENSPEMG00000013996)	Kpna7 (ENSPEMG00000017218)	Smurf1 (ENSPEMG00000004784)	Trrap (ENSPEMG00000007905)	Tmem130 (ENSPEMG00000017312)	ENSPEMG00000030777
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Mus	ANCESTRAL SPECIES	3	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
spretus	MODERN SPECIES	13	Lypla2 (MGP_SPRETEiJ_G0027631)	Gale (MGP_SPRETEiJ_G0027630) #7	Hmgcl (MGP_SPRETEiJ_G0027629) #8	Fuca1 (MGP_SPRETEiJ_G0027628) #9	Cnr2 (MGP_SPRETEiJ_G0027627) #10	Pnrc2 (MGP_SPRETEiJ_G0027626) #11	MGP_SPRETEiJ_G0027625 #12	Myom3 (MGP_SPRETEiJ_G0027624) #13	Il22ra1 (MGP_SPRETEiJ_G0027623) #14	Ifnlr1 (MGP_SPRETEiJ_G0027622) #15	Grhl3 (MGP_SPRETEiJ_G0027621) #16	Stpg1 (MGP_SPRETEiJ_G0027620) #18	Nipal3 (MGP_SPRETEiJ_G0027619) #19	Rcan3 (MGP_SPRETEiJ_G0027618) #20	Ncmap (MGP_SPRETEiJ_G0027617) #21	Srrm1 (MGP_SPRETEiJ_G0027616) #22	Clic4 (MGP_SPRETEiJ_G0027615) #23	Runx3 (MGP_SPRETEiJ_G0027614) #24	Syf2 (MGP_SPRETEiJ_G0027613) #27	Rsrp1 (MGP_SPRETEiJ_G0027612) #28	Tmem50a (MGP_SPRETEiJ_G0027611) #29	Rhd (MGP_SPRETEiJ_G0027610) #30	Maco1 (MGP_SPRETEiJ_G0027609) #31	Ldlrap1 (MGP_SPRETEiJ_G0027608) #32	Man1c1 (MGP_SPRETEiJ_G0027607) #34	MGP_SPRETEiJ_G0027606 #35	Mtfr1l (MGP_SPRETEiJ_G0027605) #36	Aunip (MGP_SPRETEiJ_G0027604) #37	Paqr7 (MGP_SPRETEiJ_G0027603)	Stmn1 (MGP_SPRETEiJ_G0027602)	Pafah2 (MGP_SPRETEiJ_G0027601)
Steppe mouse	MODERN SPECIES	3343	ENSMSIG00000004429	Gale (ENSMSIG00000004402) #7	ENSMSIG00000004292 #9	Cnr2 (ENSMSIG00000004270) #10	ENSMSIG00000004251	Pnrc2 (ENSMSIG00000004244) #11	Srsf10 (ENSMSIG00000004072) #12	Myom3 (ENSMSIG00000003941) #13	ENSMSIG00000003908	Il22ra1 (ENSMSIG00000003862) #14	Ifnlr1 (ENSMSIG00000003842) #15	Grhl3 (ENSMSIG00000003754) #16	Stpg1 (ENSMSIG00000003729) #18	Nipal3 (ENSMSIG00000003656) #19	ENSMSIG00000003535 #20	Srrm1 (ENSMSIG00000003321) #22	Clic4 (ENSMSIG00000003290) #23	Runx3 (ENSMSIG00000003230) #24	Syf2 (ENSMSIG00000003195) #27	Rsrp1 (ENSMSIG00000003163) #28	Tmem50a (ENSMSIG00000003128) #29	Rhd (ENSMSIG00000003109) #30	Maco1 (ENSMSIG00000003059) #31	Ldlrap1 (ENSMSIG00000003038) #32	Man1c1 (ENSMSIG00000002960) #34	Selenon (ENSMSIG00000002898) #35	Mtfr1l (ENSMSIG00000002873) #36	Aunip (ENSMSIG00000002831) #37	Paqr7 (ENSMSIG00000002813)	Stmn1 (ENSMSIG00000002759)	Pafah2 (ENSMSIG00000002623)
Mouse	MODERN SPECIES	13	Lypla2 (ENSMUSG00000028670)	Gale (ENSMUSG00000028671) #7	Hmgcl (ENSMUSG00000028672) #8	Fuca1 (ENSMUSG00000028673) #9	Cnr2 (ENSMUSG00000062585) #10	Pnrc2 (ENSMUSG00000028675) #11	Srsf10 (ENSMUSG00000028676) #12	Myom3 (ENSMUSG00000037139) #13	Il22ra1 (ENSMUSG00000037157) #14	Ifnlr1 (ENSMUSG00000062157) #15	Grhl3 (ENSMUSG00000037188) #16	Stpg1 (ENSMUSG00000028801) #18	Nipal3 (ENSMUSG00000028803) #19	Rcan3 (ENSMUSG00000059713) #20	Ncmap (ENSMUSG00000043924) #21	Srrm1 (ENSMUSG00000028809) #22	Clic4 (ENSMUSG00000037242) #23	Runx3 (ENSMUSG00000070691) #24	Syf2 (ENSMUSG00000028821) #27	Rsrp1 (ENSMUSG00000037266) #28	Tmem50a (ENSMUSG00000028822) #29	Rhd (ENSMUSG00000028825) #30	Maco1 (ENSMUSG00000028826) #31	Ldlrap1 (ENSMUSG00000037295) #32	Man1c1 (ENSMUSG00000037306) #34	Selenon (ENSMUSG00000050989) #35	Mtfr1l (ENSMUSG00000046671) #36	Aunip (ENSMUSG00000078521) #37	Paqr7 (ENSMUSG00000037348)	Stmn1 (ENSMUSG00000028832)	Pafah2 (ENSMUSG00000037366)
Ryukyu mouse	MODERN SPECIES	13	Lypla2 (MGP_CAROLIEiJ_G0026651)	Gale (MGP_CAROLIEiJ_G0026650) #7	Hmgcl (MGP_CAROLIEiJ_G0026649) #8	Fuca1 (MGP_CAROLIEiJ_G0026648) #9	Cnr2 (MGP_CAROLIEiJ_G0026647) #10	Pnrc2 (MGP_CAROLIEiJ_G0026646) #11	Srsf10 (MGP_CAROLIEiJ_G0026645) #12	Myom3 (MGP_CAROLIEiJ_G0026644) #13	Il22ra1 (MGP_CAROLIEiJ_G0026643) #14	Ifnlr1 (MGP_CAROLIEiJ_G0026642) #15	Grhl3 (MGP_CAROLIEiJ_G0026641) #16	Stpg1 (MGP_CAROLIEiJ_G0026640) #18	Nipal3 (MGP_CAROLIEiJ_G0026639) #19	Rcan3 (MGP_CAROLIEiJ_G0026638) #20	Ncmap (MGP_CAROLIEiJ_G0026637) #21	Srrm1 (MGP_CAROLIEiJ_G0026636) #22	Clic4 (MGP_CAROLIEiJ_G0026635) #23	Runx3 (MGP_CAROLIEiJ_G0026634) #24	Syf2 (MGP_CAROLIEiJ_G0026633) #27	Rsrp1 (MGP_CAROLIEiJ_G0026632) #28	Tmem50a (MGP_CAROLIEiJ_G0026631) #29	Rhd (MGP_CAROLIEiJ_G0026630) #30	Maco1 (MGP_CAROLIEiJ_G0026629) #31	Ldlrap1 (MGP_CAROLIEiJ_G0026628) #32	Man1c1 (MGP_CAROLIEiJ_G0026627) #34	MGP_CAROLIEiJ_G0026626 #35	Mtfr1l (MGP_CAROLIEiJ_G0026625) #36	Aunip (MGP_CAROLIEiJ_G0026624) #37	Paqr7 (MGP_CAROLIEiJ_G0026623)	Stmn1 (MGP_CAROLIEiJ_G0026622)	Pafah2 (MGP_CAROLIEiJ_G0026621)
Shrew mouse	MODERN SPECIES	19	Lypla2 (MGP_PahariEiJ_G0028984)	Gale (MGP_PahariEiJ_G0028983) #7	Hmgcl (MGP_PahariEiJ_G0028982) #8	Fuca1 (MGP_PahariEiJ_G0028981) #9	Cnr2 (MGP_PahariEiJ_G0028980) #10	Pnrc2 (MGP_PahariEiJ_G0028979) #11	MGP_PahariEiJ_G0028978 #12	Myom3 (MGP_PahariEiJ_G0028977) #13	Il22ra1 (MGP_PahariEiJ_G0028976) #14	Ifnlr1 (MGP_PahariEiJ_G0028975) #15	Grhl3 (MGP_PahariEiJ_G0028974) #16	Stpg1 (MGP_PahariEiJ_G0028973) #18	Nipal3 (MGP_PahariEiJ_G0028972) #19	Rcan3 (MGP_PahariEiJ_G0028971) #20	Ncmap (MGP_PahariEiJ_G0028970) #21	Srrm1 (MGP_PahariEiJ_G0028969) #22	Clic4 (MGP_PahariEiJ_G0028968) #23	Runx3 (MGP_PahariEiJ_G0028967) #24	Syf2 (MGP_PahariEiJ_G0028966) #27	Rsrp1 (MGP_PahariEiJ_G0028965) #28	Tmem50a (MGP_PahariEiJ_G0028964) #29	Rhd (MGP_PahariEiJ_G0028963) #30	Maco1 (MGP_PahariEiJ_G0028962) #31	Ldlrap1 (MGP_PahariEiJ_G0028961) #32	Man1c1 (MGP_PahariEiJ_G0028960) #34	MGP_PahariEiJ_G0028959 #35	Mtfr1l (MGP_PahariEiJ_G0028958) #36	Aunip (MGP_PahariEiJ_G0028957) #37	Paqr7 (MGP_PahariEiJ_G0028956)	Stmn1 (MGP_PahariEiJ_G0028955)	Pafah2 (MGP_PahariEiJ_G0028954)
Rat	MODERN SPECIES	15	Hmgcl (ENSRNOG00000009422) #8	Fuca1 (ENSRNOG00000009325) #9	Cnr2 (ENSRNOG00000009260) #10	Pnrc2 (ENSRNOG00000009248)	Pnrc2 (ENSRNOG00000070268) #11	Srsf10 (ENSRNOG00000007992) #12	Myom3 (ENSRNOG00000032994) #13	Il22ra1 (ENSRNOG00000066331) #14	Ifnlr1 (ENSRNOG00000033984) #15	LOC500567 (ENSRNOG00000026676)	Grhl3 (ENSRNOG00000029427) #16	Stpg1 (ENSRNOG00000031448) #18	Nipal3 (ENSRNOG00000037165) #19	Rcan3 (ENSRNOG00000018576) #20	Ncmap (ENSRNOG00000048139) #21	Srrm1 (ENSRNOG00000018194) #22	Clic4 (ENSRNOG00000018109) #23	Runx3 (ENSRNOG00000054217) #24	Syf2 (ENSRNOG00000060597) #27	Rsrp1 (ENSRNOG00000017309)	Tmem50a (ENSRNOG00000017279) #29	Rhd (ENSRNOG00000017130) #30	Maco1 (ENSRNOG00000056156) #31	ENSRNOG00000067890	Ldlrap1 (ENSRNOG00000000151) #32	Man1c1 (ENSRNOG00000017087) #34	Selenon (ENSRNOG00000017078) #35	Mtfr1l (ENSRNOG00000016937) #36	Aunip (ENSRNOG00000022030) #37	Paqr7 (ENSRNOG00000022054)	Stmn1 (ENSRNOG00000016810)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1791													ENSNGAG00000015429	Ncmap (ENSNGAG00000017500) #21	ENSNGAG00000018839	Srrm1 (ENSNGAG00000014562) #22	ENSNGAG00000015217	Clic4 (ENSNGAG00000017080) #23	Runx3 (ENSNGAG00000001343) #24	Syf2 (ENSNGAG00000007912) #27	Rsrp1 (ENSNGAG00000011069) #28	Tmem50a (ENSNGAG00000015688) #29	Rhd (ENSNGAG00000018131) #30	ENSNGAG00000020189	Maco1 (ENSNGAG00000016146) #31	Ldlrap1 (ENSNGAG00000017589) #32	Man1c1 (ENSNGAG00000019464) #34
Lesser Egyptian jerboa	MODERN SPECIES	63	Pithd1 (ENSJJAG00000010008)	Lypla2 (ENSJJAG00000006819)	Gale (ENSJJAG00000011124) #7	Hmgcl (ENSJJAG00000013840) #8	Fuca1 (ENSJJAG00000012173) #9	Cnr2 (ENSJJAG00000005102) #10	ENSJJAG00000005186 #11	ENSJJAG00000009074 #12	Myom3 (ENSJJAG00000001690) #13	Il22ra1 (ENSJJAG00000017430) #14	Ifnlr1 (ENSJJAG00000011888) #15	ENSJJAG00000016170 #16	Stpg1 (ENSJJAG00000007414) #18	Nipal3 (ENSJJAG00000015416) #19	Rcan3 (ENSJJAG00000011623) #20	Srrm1 (ENSJJAG00000018643) #22	Clic4 (ENSJJAG00000023938) #23	Runx3 (ENSJJAG00000003722) #24	Syf2 (ENSJJAG00000013301) #27	Rsrp1 (ENSJJAG00000001101) #28	Maco1 (ENSJJAG00000002912) #31	Ldlrap1 (ENSJJAG00000009407) #32	Man1c1 (ENSJJAG00000011381) #34	Selenon (ENSJJAG00000007206) #35	Mtfr1l (ENSJJAG00000005254) #36	Paqr7 (ENSJJAG00000004766)	Stmn1 (ENSJJAG00000023623)	Pafah2 (ENSJJAG00000008153)	Slc30a2 (ENSJJAG00000012135)	Trim63 (ENSJJAG00000002973)	Pdik1l (ENSJJAG00000008196)
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00730000111080.b #22
Common shrew	MODERN SPECIES	1359																SRRM1 (ENSSARG00000013718) #22
Hedgehog	MODERN SPECIES	2997																SRRM1 (ENSEEUG00000013830) #22
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.i.a
Suina	ANCESTRAL SPECIES	10	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.i.a	ENSGT00390000005233.a
Chacoan peccary	MODERN SPECIES	808	GALE (ENSCWAG00000015839) #7	ENSCWAG00000015862 #8	FUCA1 (ENSCWAG00000003736) #9	CNR2 (ENSCWAG00000003894) #10	ENSCWAG00000003911	PNRC2 (ENSCWAG00000003934) #11	SRSF10 (ENSCWAG00000003966) #12	MYOM3 (ENSCWAG00000004061) #13	IL22RA1 (ENSCWAG00000004309) #14	IFNLR1 (ENSCWAG00000004382) #15	GRHL3 (ENSCWAG00000004657) #16	STPG1 (ENSCWAG00000004830) #18	NIPAL3 (ENSCWAG00000004914) #19	RCAN3 (ENSCWAG00000004967) #20	NCMAP (ENSCWAG00000005045) #21	SRRM1 (ENSCWAG00000005079) #22	CLIC4 (ENSCWAG00000005232) #23	RUNX3 (ENSCWAG00000005265) #24	SYF2 (ENSCWAG00000005335) #27	RSRP1 (ENSCWAG00000005360) #28	TMEM50A (ENSCWAG00000005387) #29	ENSCWAG00000005468 #30	MACO1 (ENSCWAG00000005993) #31	LDLRAP1 (ENSCWAG00000006041) #32	MAN1C1 (ENSCWAG00000006068) #34	SELENON (ENSCWAG00000006177) #35	MTFR1L (ENSCWAG00000006278) #36	AUNIP (ENSCWAG00000006323) #37	PAQR7 (ENSCWAG00000006353)	STMN1 (ENSCWAG00000006366)	PAFAH2 (ENSCWAG00000006390)
Pig	MODERN SPECIES	14	PITHD1 (ENSSSCG00000023495)	LYPLA2 (ENSSSCG00000023191)	GALE (ENSSSCG00000027827) #7	HMGCL (ENSSSCG00000026025) #8	FUCA1 (ENSSSCG00000027659) #9	CNR2 (ENSSSCG00000027849) #10	PNRC2 (ENSSSCG00000023326) #11	SRSF10 (ENSSSCG00000036293) #12	MYOM3 (ENSSSCG00000036534) #13	IL22RA1 (ENSSSCG00000038848) #14	IFNLR1 (ENSSSCG00000032860) #15	GRHL3 (ENSSSCG00000003539) #16	STPG1 (ENSSSCG00000003541) #18	NIPAL3 (ENSSSCG00000003543) #19	RCAN3 (ENSSSCG00000024818) #20	SRRM1 (ENSSSCG00000032947) #22	ENSSSCG00000042897	CLIC4 (ENSSSCG00000038994) #23	RUNX3 (ENSSSCG00000032686) #24	SYF2 (ENSSSCG00000037481) #27	RSRP1 (ENSSSCG00000034449) #28	TMEM50A (ENSSSCG00000024267) #29	RHCE (ENSSSCG00000026791) #30	MACO1 (ENSSSCG00000030682) #31	LDLRAP1 (ENSSSCG00000003549) #32	MAN1C1 (ENSSSCG00000023235) #34	SELENON (ENSSSCG00000003554) #35	MTFR1L (ENSSSCG00000003553) #36	AUNIP (ENSSSCG00000003552) #37	PAQR7 (ENSSSCG00000003551)	STMN1 (ENSSSCG00000026257)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000165247	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.i.a
Camelidae	ANCESTRAL SPECIES	3	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000165247	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.i.a	ENSGT00390000005233.a
Arabian camel	MODERN SPECIES	4	GALE (ENSCDRG00005003344) #7	HMGCL (ENSCDRG00005003396) #8	FUCA1 (ENSCDRG00005003479) #9	CNR2 (ENSCDRG00005003510) #10	ENSCDRG00005003543	PNRC2 (ENSCDRG00005003571) #11	SRSF10 (ENSCDRG00005003602) #12	MYOM3 (ENSCDRG00005003689) #13	IL22RA1 (ENSCDRG00005003864) #14	ENSCDRG00005003900 #15	GRHL3 (ENSCDRG00005003967) #16	STPG1 (ENSCDRG00005004130) #18	NIPAL3 (ENSCDRG00005004204) #19	RCAN3 (ENSCDRG00005004258) #20	NCMAP (ENSCDRG00005004364) #21	SRRM1 (ENSCDRG00005004402) #22	CLIC4 (ENSCDRG00005004479) #23	RUNX3 (ENSCDRG00005004492) #24	ENSCDRG00005004517	SYF2 (ENSCDRG00005004530) #27	ENSCDRG00005004554 #28	TMEM50A (ENSCDRG00005004599) #29	ENSCDRG00005004654 #30	MACO1 (ENSCDRG00005004933) #31	LDLRAP1 (ENSCDRG00005005069) #32	MAN1C1 (ENSCDRG00005005111) #34	ENSCDRG00005005197 #35	ENSCDRG00005005250 #35	MTFR1L (ENSCDRG00005005263) #36	AUNIP (ENSCDRG00005005301) #37	PAQR7 (ENSCDRG00005005321)
Alpaca	MODERN SPECIES	1327											GRHL3 (ENSVPAG00000007692) #16	STPG1 (ENSVPAG00000007694) #18	NIPAL3 (ENSVPAG00000007695) #19	RCAN3 (ENSVPAG00000007696) #20	NCMAP (ENSVPAG00000007697) #21	SRRM1 (ENSVPAG00000007698) #22	CLIC4 (ENSVPAG00000007699) #23
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000165247	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.i.a
Cetacea	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000165247	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b.c #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.i.a
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000165247	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b.c #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.i.a
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b.c #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.i.a
Odontoceti_b	ANCESTRAL SPECIES		ENSGT01060000248564.a.b #10	ENSGT00910000148416	ENSGT00940000165247	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000003738.a.a.b.d	ENSGT00390000004116 #21	ENSGT00940000164805	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b.c #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.j
Monodontidae	ANCESTRAL SPECIES		ENSGT01060000248564.a.b #10	ENSGT00910000148416	ENSGT00940000165247	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000003738.a.a.b.d	ENSGT00390000004116 #21	ENSGT00940000164805	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b.c #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.i.a
Beluga whale	MODERN SPECIES	51	CNR2 (ENSDLEG00000010661) #10	ENSDLEG00000010652	PNRC2 (ENSDLEG00000010644) #11	SRSF10 (ENSDLEG00000010621) #12	ENSDLEG00000010610	MYOM3 (ENSDLEG00000010532) #13	IL22RA1 (ENSDLEG00000010508) #14	IFNLR1 (ENSDLEG00000010494) #15	GRHL3 (ENSDLEG00000010465) #16	STPG1 (ENSDLEG00000010441) #18	NIPAL3 (ENSDLEG00000010403) #19	RCAN3 (ENSDLEG00000010384) #20	ENSDLEG00000010368	NCMAP (ENSDLEG00000010346) #21	ENSDLEG00000010333	SRRM1 (ENSDLEG00000010258) #22	CLIC4 (ENSDLEG00000010219) #23	RUNX3 (ENSDLEG00000010192) #24	ENSDLEG00000010163 #27	ENSDLEG00000010060 #27	RSRP1 (ENSDLEG00000010009) #28	TMEM50A (ENSDLEG00000009961) #29	ENSDLEG00000009903 #30	TMEM57 (ENSDLEG00000009846) #31	LDLRAP1 (ENSDLEG00000009815) #32	MAN1C1 (ENSDLEG00000009789) #34	SELENON (ENSDLEG00000009770) #35	MTFR1L (ENSDLEG00000009746) #36	AUNIP (ENSDLEG00000009735) #37	PAQR7 (ENSDLEG00000009730)	STMN1 (ENSDLEG00000009712)
Narwhal	MODERN SPECIES	304	CNR2 (ENSMMNG00015007838) #10	ENSMMNG00015007823	ENSMMNG00015007815	PNRC2 (ENSMMNG00015007804) #11	ENSMMNG00015007734 #12	MYOM3 (ENSMMNG00015007606) #13	IL22RA1 (ENSMMNG00015007559) #14	IFNLR1 (ENSMMNG00015007523) #15	GRHL3 (ENSMMNG00015007444) #16	STPG1 (ENSMMNG00015007411) #18	NIPAL3 (ENSMMNG00015007369) #19	RCAN3 (ENSMMNG00015007336) #20	ENSMMNG00015007318	ENSMMNG00015007308	NCMAP (ENSMMNG00015007295) #21	SRRM1 (ENSMMNG00015007227) #22	CLIC4 (ENSMMNG00015007165) #23	RUNX3 (ENSMMNG00015007131) #24	ENSMMNG00015007093 #27	ENSMMNG00015007068 #27	RSRP1 (ENSMMNG00015007041) #28	TMEM50A (ENSMMNG00015007015) #29	ENSMMNG00015006957 #30	MACO1 (ENSMMNG00015006910) #31	LDLRAP1 (ENSMMNG00015006880) #32	MAN1C1 (ENSMMNG00015006828) #34	ENSMMNG00015006784 #35	ENSMMNG00015006766 #35	ENSMMNG00015006725 #36	AUNIP (ENSMMNG00015006698) #37	PAQR7 (ENSMMNG00015006680)
Vaquita	MODERN SPECIES		FUCA1 (ENSPSNG00000000723) #9	CNR2 (ENSPSNG00000000742) #10	ENSPSNG00000000754	PNRC2 (ENSPSNG00000000768) #11	SRSF10 (ENSPSNG00000000799) #12	MYOM3 (ENSPSNG00000000862) #13	IL22RA1 (ENSPSNG00000000952) #14	IFNLR1 (ENSPSNG00000001009) #15	GRHL3 (ENSPSNG00000001087) #16	STPG1 (ENSPSNG00000001163) #18	NIPAL3 (ENSPSNG00000001223) #19	RCAN3 (ENSPSNG00000001266) #20	ENSPSNG00000001293	NCMAP (ENSPSNG00000001307) #21	ENSPSNG00000001318	SRRM1 (ENSPSNG00000001348) #22	CLIC4 (ENSPSNG00000001405) #23	RUNX3 (ENSPSNG00000001431) #24	ENSPSNG00000001460 #27	ENSPSNG00000001485 #27	RSRP1 (ENSPSNG00000001513) #28	TMEM50A (ENSPSNG00000001538) #29	ENSPSNG00000001626 #30	MACO1 (ENSPSNG00000001819) #31	LDLRAP1 (ENSPSNG00000001864) #32	MAN1C1 (ENSPSNG00000001893) #34	SELENON (ENSPSNG00000001946) #35	MTFR1L (ENSPSNG00000001982) #36	AUNIP (ENSPSNG00000002010) #37	PAQR7 (ENSPSNG00000002029)	STMN1 (ENSPSNG00000002046)
Dolphin	MODERN SPECIES	355																SRRM1 (ENSTTRG00000009365) #22	CLIC4 (ENSTTRG00000009381) #23	RUNX3 (ENSTTRG00000009396) #24
Sperm whale	MODERN SPECIES	14	LYPLA2 (ENSPCTG00005007766)	GALE (ENSPCTG00005007731) #7	HMGCL (ENSPCTG00005007679) #8	FUCA1 (ENSPCTG00005007572) #9	CNR2 (ENSPCTG00005007530) #10	ENSPCTG00005007522	PNRC2 (ENSPCTG00005007515) #11	SRSF10 (ENSPCTG00005007467) #12	GRHL3 (ENSPCTG00005007387) #16	IFNLR1 (ENSPCTG00005007312) #15	NIPAL3 (ENSPCTG00005007259) #19	RCAN3 (ENSPCTG00005007200) #20	NCMAP (ENSPCTG00005007165) #21	ENSPCTG00005007147	ENSPCTG00005007125	SRRM1 (ENSPCTG00005006969) #22	CLIC4 (ENSPCTG00005006926) #23	RUNX3 (ENSPCTG00005006898) #24	ENSPCTG00005006850 #27	ENSPCTG00005006738 #27	RSRP1 (ENSPCTG00005006694) #28	TMEM50A (ENSPCTG00005006647) #29	ENSPCTG00005005488 #30	MACO1 (ENSPCTG00005005347) #31	LDLRAP1 (ENSPCTG00005005304) #32	MAN1C1 (ENSPCTG00005005276) #34	SELENON (ENSPCTG00005005120) #35	MTFR1L (ENSPCTG00005005037) #36	AUNIP (ENSPCTG00005005872) #37	PAQR7 (ENSPCTG00005005864)	EXTL1 (ENSPCTG00005005827)
Blue whale	MODERN SPECIES		ENSBMSG00010005030	CNR2 (ENSBMSG00010005035) #10	ENSBMSG00010005073 #11	ENSBMSG00010005090 #12	MYOM3 (ENSBMSG00010005148) #13	IL22RA1 (ENSBMSG00010005209) #14	IFNLR1 (ENSBMSG00010005237) #15	GRHL3 (ENSBMSG00010005270) #16	STPG1 (ENSBMSG00010005319) #18	NIPAL3 (ENSBMSG00010005347) #19	RCAN3 (ENSBMSG00010005360) #20	ENSBMSG00010005385	ENSBMSG00010005393 #21	ENSBMSG00010005404	ENSBMSG00010005412	SRRM1 (ENSBMSG00010005436) #22	CLIC4 (ENSBMSG00010005464) #23	RUNX3 (ENSBMSG00010005477) #24	ENSBMSG00010005490 #27	ENSBMSG00010005498 #27	RSRP1 (ENSBMSG00010005505) #28	TMEM50A (ENSBMSG00010005519) #29	ENSBMSG00010005597 #30	MACO1 (ENSBMSG00010005847) #31	LDLRAP1 (ENSBMSG00010005875) #32	MAN1C1 (ENSBMSG00010005899) #34	SELENON (ENSBMSG00010005935) #35	ENSBMSG00010005965 #36	AUNIP (ENSBMSG00010005981) #37	PAQR7 (ENSBMSG00010006003)	ENSBMSG00010006015
Pecora	ANCESTRAL SPECIES	16	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000165247	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00960000188436	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.i.b
Yarkand deer	MODERN SPECIES	31	PITHD1 (ENSCHYG00000008305)	ENSCHYG00000008375	ENSCHYG00000008499 #7	FUCA1 (ENSCHYG00000008690) #9	CNR2 (ENSCHYG00000008760) #10	ENSCHYG00000008776	PNRC2 (ENSCHYG00000008795) #11	SRSF10 (ENSCHYG00000008859) #12	MYOM3 (ENSCHYG00000009326) #13	IL22RA1 (ENSCHYG00000009617) #14	IFNLR1 (ENSCHYG00000009691) #15	GRHL3 (ENSCHYG00000009786) #16	STPG1 (ENSCHYG00000010086) #18	NIPAL3 (ENSCHYG00000010238) #19	RCAN3 (ENSCHYG00000010444) #20	SRRM1 (ENSCHYG00000000242) #22	ENSCHYG00000000334	ENSCHYG00000000352 #23	RUNX3 (ENSCHYG00000000382) #24	SYF2 (ENSCHYG00000000406) #27	RSRP1 (ENSCHYG00000000419) #28	TMEM50A (ENSCHYG00000000448) #29	ENSCHYG00000000474 #30	MACO1 (ENSCHYG00000000511) #31	LDLRAP1 (ENSCHYG00000000571) #32	MAN1C1 (ENSCHYG00000000620) #34	ENSCHYG00000000668	ENSCHYG00000000679 #35	ENSCHYG00000000694 #35	MTFR1L (ENSCHYG00000000710) #36	ENSCHYG00000000762
Percora_a	ANCESTRAL SPECIES	5	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000165247	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00960000188436	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.i.b
Siberian musk deer	MODERN SPECIES	354	ENSMMSG00000008212 #8	FUCA1 (ENSMMSG00000008170) #9	CNR2 (ENSMMSG00000008162) #10	ENSMMSG00000008145	PNRC2 (ENSMMSG00000008137) #11	SRSF10 (ENSMMSG00000008099) #12	ENSMMSG00000008044	MYOM3 (ENSMMSG00000007928) #13	IL22RA1 (ENSMMSG00000007877) #14	IFNLR1 (ENSMMSG00000007799) #15	GRHL3 (ENSMMSG00000007665) #16	STPG1 (ENSMMSG00000007597) #18	NIPAL3 (ENSMMSG00000007511) #19	RCAN3 (ENSMMSG00000007436) #20	NCMAP (ENSMMSG00000007423) #21	SRRM1 (ENSMMSG00000007331) #22	ENSMMSG00000007285 #23	RUNX3 (ENSMMSG00000007223) #24	SYF2 (ENSMMSG00000007178) #27	RSRP1 (ENSMMSG00000007148) #28	ENSMMSG00000007119	TMEM50A (ENSMMSG00000007075) #29	ENSMMSG00000006479 #30	MACO1 (ENSMMSG00000006393) #31	LDLRAP1 (ENSMMSG00000006364) #32	MAN1C1 (ENSMMSG00000006256) #34	SELENON (ENSMMSG00000006176) #35	MTFR1L (ENSMMSG00000006135) #36	AUNIP (ENSMMSG00000006121) #37	PAQR7 (ENSMMSG00000006113)	STMN1 (ENSMMSG00000006084)
Bovidae	ANCESTRAL SPECIES	8	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000165247	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00960000188537	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00960000188436	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438
Bovinae	DUPLICATION
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000165247	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.e #22	ENSGT00960000188537	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00960000188436	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438
Bos	ANCESTRAL SPECIES	6	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000165247	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.e #22	ENSGT00960000188537	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00960000188436	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438
Bos_a	ANCESTRAL SPECIES	4								ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.e #22	ENSGT00960000188537	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00960000188436	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	24	PIANP (ENSBGRG00000000449)	ZNF384 (ENSBGRG00000000467)	ENSBGRG00000000548	ACRBP (ENSBGRG00000000596)	LPAR5 (ENSBGRG00000000647)	CHD4 (ENSBGRG00000000684)	NOP2 (ENSBGRG00000000846)	IFFO1 (ENSBGRG00000000872)	ENSBGRG00000001026	ENSBGRG00000001042	MRPL51 (ENSBGRG00000001145)	VAMP1 (ENSBGRG00000001169)	ENSBGRG00000001236	CD27 (ENSBGRG00000001262)	LTBR (ENSBGRG00000001281)	ENSBGRG00000001292 #22	SCNN1A (ENSBGRG00000001315)	TNFRSF1A (ENSBGRG00000001449)	PLEKHG6 (ENSBGRG00000001519)	CD9 (ENSBGRG00000001613)	VWF (ENSBGRG00000002102)	ANO2 (ENSBGRG00000010076)	NTF3 (ENSBGRG00000011039)	ENSBGRG00000011119	KCNA1 (ENSBGRG00000011151)	KCNA6 (ENSBGRG00000011193)	GALNT8 (ENSBGRG00000011211)	NDUFA9 (ENSBGRG00000011376)	AKAP3 (ENSBGRG00000011443)	DYRK4 (ENSBGRG00000011533)	RAD51AP1 (ENSBGRG00000011786)
Domestic yak	MODERN SPECIES	11	GALE (ENSBGRG00000005007) #7	HMGCL (ENSBGRG00000005125) #8	FUCA1 (ENSBGRG00000005227) #9	CNR2 (ENSBGRG00000005295) #10	ENSBGRG00000005315	PNRC2 (ENSBGRG00000005344) #11	ENSBGRG00000005382 #12	MYOM3 (ENSBGRG00000005605) #13	IL22RA1 (ENSBGRG00000006043) #14	IFNLR1 (ENSBGRG00000006084) #15	GRHL3 (ENSBGRG00000006200) #16	STPG1 (ENSBGRG00000006515) #18	NIPAL3 (ENSBGRG00000006640) #19	RCAN3 (ENSBGRG00000006726) #20	ENSBGRG00000006848 #21	ENSBGRG00000006897 #22	NOP10 (ENSBGRG00000007282)	CLIC4 (ENSBGRG00000007301) #23	RUNX3 (ENSBGRG00000007394) #24	ENSBGRG00000007540 #27	ENSBGRG00000007651	TMEM50A (ENSBGRG00000007668) #29	ENSBGRG00000007832 #30	MACO1 (ENSBGRG00000007916) #31	LDLRAP1 (ENSBGRG00000008061) #32	MAN1C1 (ENSBGRG00000008298) #34	ENSBGRG00000008465	ENSBGRG00000008512 #35	ENSBGRG00000008545 #35	MTFR1L (ENSBGRG00000008577) #36	ENSBGRG00000008672
Wild yak	MODERN SPECIES	1202						ENSBMUG00000022466	SRSF10 (ENSBMUG00000022433) #12	MYOM3 (ENSBMUG00000022329) #13	IL22RA1 (ENSBMUG00000022279) #14	IFNLR1 (ENSBMUG00000022271) #15	GRHL3 (ENSBMUG00000022241) #16	STPG1 (ENSBMUG00000022204) #18	NIPAL3 (ENSBMUG00000022179) #19	RCAN3 (ENSBMUG00000022148) #20	NCMAP (ENSBMUG00000022120) #21	ENSBMUG00000022094 #22
Bos_b	ANCESTRAL SPECIES	20	ENSGT00940000156197.c.a	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.e #22	ENSGT00960000188537	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00960000188436	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438
Hybrid Bos Indicus	MODERN SPECIES	11	GALE (ENSBIXG00005030410) #7	HMGCL (ENSBIXG00005030396) #8	FUCA1 (ENSBIXG00005030361) #9	CNR2 (ENSBIXG00005030340) #10	ENSBIXG00005030328	ENSBIXG00005030316 #11	SRSF10 (ENSBIXG00005030280) #12	MYOM3 (ENSBIXG00005030177) #13	IL22RA1 (ENSBIXG00005030112) #14	IFNLR1 (ENSBIXG00005030096) #15	GRHL3 (ENSBIXG00005030077) #16	STPG1 (ENSBIXG00005030049) #18	NIPAL3 (ENSBIXG00005030014) #19	ENSBIXG00005030007	RCAN3 (ENSBIXG00005029979) #20	SRRM1 (ENSBIXG00005029914) #22	CLIC4 (ENSBIXG00005029891) #23	RUNX3 (ENSBIXG00005029882) #24	ENSBIXG00005029871	SYF2 (ENSBIXG00005029859) #27	RSRP1 (ENSBIXG00005029845) #28	TMEM50A (ENSBIXG00005029829) #29	ENSBIXG00005029791 #30	MACO1 (ENSBIXG00005029757) #31	LDLRAP1 (ENSBIXG00005029721) #32	MAN1C1 (ENSBIXG00005029692) #34	ENSBIXG00005029678	SELENON (ENSBIXG00005029596) #35	MTFR1L (ENSBIXG00005029521) #36	AUNIP (ENSBIXG00005029499) #37	PAQR7 (ENSBIXG00005029478)
Cow	MODERN SPECIES	11	LYPLA2 (ENSBTAG00000011625)	GALE (ENSBTAG00000005002) #7	HMGCL (ENSBTAG00000021832) #8	FUCA1 (ENSBTAG00000030434) #9	CNR2 (ENSBTAG00000019371) #10	PNRC2 (ENSBTAG00000030435) #11	SRSF10 (ENSBTAG00000008072) #12	MYOM3 (ENSBTAG00000014885) #13	IL22RA1 (ENSBTAG00000001100) #14	IFNLR1 (ENSBTAG00000001101) #15	GRHL3 (ENSBTAG00000019791) #16	STPG1 (ENSBTAG00000010278) #18	NIPAL3 (ENSBTAG00000013048) #19	RCAN3 (ENSBTAG00000017452) #20	NCMAP (ENSBTAG00000012604) #21	SRRM1 (ENSBTAG00000013772) #22	ENSBTAG00000054129	CLIC4 (ENSBTAG00000009470) #23	RUNX3 (ENSBTAG00000050474) #24	SYF2 (ENSBTAG00000001651) #27	RSRP1 (ENSBTAG00000015222) #28	TMEM50A (ENSBTAG00000001296) #29	ENSBTAG00000001297 #30	MACO1 (ENSBTAG00000002988) #31	LDLRAP1 (ENSBTAG00000001050) #32	MAN1C1 (ENSBTAG00000003069) #34	ENSBTAG00000052666	SELENON (ENSBTAG00000021778) #35	MTFR1L (ENSBTAG00000021781) #36	AUNIP (ENSBTAG00000021786) #37	PAQR7 (ENSBTAG00000021787)
American bison	MODERN SPECIES	3363	GALE (ENSBBBG00000014832) #7	HMGCL (ENSBBBG00000014808) #8	FUCA1 (ENSBBBG00000006950) #9	CNR2 (ENSBBBG00000003584) #10	ENSBBBG00000014759	PNRC2 (ENSBBBG00000003581) #11	SRSF10 (ENSBBBG00000014740) #12	MYOM3 (ENSBBBG00000014693) #13	IL22RA1 (ENSBBBG00000014626) #14	IFNLR1 (ENSBBBG00000007937) #15	GRHL3 (ENSBBBG00000002862) #16	STPG1 (ENSBBBG00000014563) #18	NIPAL3 (ENSBBBG00000007602) #19	RCAN3 (ENSBBBG00000014529) #20	NCMAP (ENSBBBG00000014506) #21	SRRM1 (ENSBBBG00000014498) #22	ENSBBBG00000008150	CLIC4 (ENSBBBG00000003335) #23	ENSBBBG00000007127 #24	SYF2 (ENSBBBG00000003323) #27	RSRP1 (ENSBBBG00000006948) #28	TMEM50A (ENSBBBG00000014406) #29	ENSBBBG00000001411 #30	MACO1 (ENSBBBG00000003299) #31	LDLRAP1 (ENSBBBG00000014379) #32	MAN1C1 (ENSBBBG00000001416) #34	ENSBBBG00000014327	SELENON (ENSBBBG00000009117) #35	MTFR1L (ENSBBBG00000014312) #36	AUNIP (ENSBBBG00000003252) #37	PAQR7 (ENSBBBG00000014305)
Bovinae	ANCESTRAL SPECIES																	ENSGT00730000111080.b.f #22
Bos	ANCESTRAL SPECIES																	ENSGT00730000111080.b.f #22
Bos_a	ANCESTRAL SPECIES	59	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783.e.a	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00730000111539	ENSGT00940000162756	ENSGT00940000162109.B.e	ENSGT00940000162109.B.f	ENSGT00940000161951	ENSGT00940000162109.A	ENSGT00730000111080.b.f #22	ENSGT00860000134229	ENSGT00950000183472	ENSGT00940000165160	ENSGT00950000186363.b	ENSGT00950000186330	ENSGT00950000186363.a	ENSGT01050000245033.c.b.a.a.d	ENSGT01050000245033.c.b.a.b	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463	ENSGT00940000156294	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.a.a.b.a	ENSGT00940000155551
Domestic yak	MODERN SPECIES		RWDD2B (ENSBGRG00000000076)	USP16 (ENSBGRG00000000077)	ENSBGRG00000000078	MAP3K7CL (ENSBGRG00000000079)	BACH1 (ENSBGRG00000000080)	GRIK1 (ENSBGRG00000000082)	CLDN17 (ENSBGRG00000000083)	CLDN8 (ENSBGRG00000000084)	KRTAP24-1 (ENSBGRG00000000085)	ENSBGRG00000000086	ENSBGRG00000000088	ENSBGRG00000000089	ENSBGRG00000000090	KAP13.1 (ENSBGRG00000000091)	KRTAP15-1 (ENSBGRG00000000092)	ENSBGRG00000000093 #22	ENSBGRG00000000094	KRTAP19-3 (ENSBGRG00000000096)	KRTAP19-5 (ENSBGRG00000000097)	ENSBGRG00000000099	ENSBGRG00000000100	ENSBGRG00000000101	ENSBGRG00000000103	ENSBGRG00000000105	ENSBGRG00000000106	ENSBGRG00000000107	ENSBGRG00000000108	KRTAP8-1 (ENSBGRG00000000109)	KRTAP7-1 (ENSBGRG00000000110)	KAP11.1 (ENSBGRG00000000111)	TIAM1 (ENSBGRG00000000112)
Wild yak	MODERN SPECIES	1107							CLDN17 (ENSBMUG00000006881)	CLDN8 (ENSBMUG00000006867)	KRTAP24-1 (ENSBMUG00000006858)	KRTAP27-1 (ENSBMUG00000006852)	ENSBMUG00000006847	ENSBMUG00000006836	ENSBMUG00000006830	KRTAP13-3 (ENSBMUG00000006819)	KRTAP15-1 (ENSBMUG00000006813)	ENSBMUG00000006810 #22	ENSBMUG00000006803
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000156197.d	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00940000165247	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00960000188537	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a.i.b
Rambouillet Sheep	MODERN SPECIES	11	GALE (ENSOARG00020013234) #7	HMGCL (ENSOARG00020013128) #8	FUCA1 (ENSOARG00020012979) #9	CNR2 (ENSOARG00020012960) #10	ENSOARG00020012913	ENSOARG00020012860	SRSF10 (ENSOARG00020012698) #12	MYOM3 (ENSOARG00020012256) #13	IL22RA1 (ENSOARG00020012141) #14	IFNLR1 (ENSOARG00020011823) #15	GRHL3 (ENSOARG00020011379) #16	STPG1 (ENSOARG00020011141) #18	NIPAL3 (ENSOARG00020010878) #19	RCAN3 (ENSOARG00020010543) #20	NCMAP (ENSOARG00020010447) #21	SRRM1 (ENSOARG00020010009) #22	ENSOARG00020009955	CLIC4 (ENSOARG00020009910) #23	RUNX3 (ENSOARG00020009815) #24	SYF2 (ENSOARG00020009730) #27	RSRP1 (ENSOARG00020009704) #28	TMEM50A (ENSOARG00020009675) #29	ENSOARG00020009279 #30	MACO1 (ENSOARG00020009165) #31	LDLRAP1 (ENSOARG00020009117) #32	MAN1C1 (ENSOARG00020008879) #34	SELENON (ENSOARG00020008602) #35	MTFR1L (ENSOARG00020008503) #36	AUNIP (ENSOARG00020008461) #37	PAQR7 (ENSOARG00020008442)	STMN1 (ENSOARG00020008402)
Goat	DUPLICATION
Goat	MODERN SPECIES	11	ENSCHIG00000027165	GALE (ENSCHIG00000014259) #7	HMGCL (ENSCHIG00000026977) #8	FUCA1 (ENSCHIG00000005760) #9	CNR2 (ENSCHIG00000001088) #10	SRSF10 (ENSCHIG00000018516) #12	ENSCHIG00000023999	MYOM3 (ENSCHIG00000008403) #13	IL22RA1 (ENSCHIG00000025784) #14	IFNLR1 (ENSCHIG00000023981) #15	GRHL3 (ENSCHIG00000018972) #16	STPG1 (ENSCHIG00000014996) #18	NIPAL3 (ENSCHIG00000021129) #19	RCAN3 (ENSCHIG00000021890) #20	NCMAP (ENSCHIG00000019328) #21	SRRM1 (ENSCHIG00000014656) #22	ENSCHIG00000007783	CLIC4 (ENSCHIG00000011710) #23	RUNX3 (ENSCHIG00000024379) #24	SYF2 (ENSCHIG00000020874) #27	RSRP1 (ENSCHIG00000015600) #28	TMEM50A (ENSCHIG00000025877) #29	ENSCHIG00000026132 #30	MACO1 (ENSCHIG00000026786) #31	LDLRAP1 (ENSCHIG00000003548) #32	MAN1C1 (ENSCHIG00000017004) #34	SELENON (ENSCHIG00000021642) #35	MTFR1L (ENSCHIG00000021935) #36	AUNIP (ENSCHIG00000014935) #37	ENSCHIG00000023552	PAFAH2 (ENSCHIG00000020000)
Goat	MODERN SPECIES	8									NPY2R (ENSCHIG00000010029)	MAP9 (ENSCHIG00000010944)	TLL1 (ENSCHIG00000024381)	CPE (ENSCHIG00000025090)	MSMO1 (ENSCHIG00000012999)	KLHL2 (ENSCHIG00000009018)	ENSCHIG00000021994	ENSCHIG00000021159 #22	TMEM192 (ENSCHIG00000025377)	ENSCHIG00000019259	ENSCHIG00000010226	RBM46 (ENSCHIG00000000502)	LRAT (ENSCHIG00000017020)	ENSCHIG00000025097	FGG (ENSCHIG00000014747)	ENSCHIG00000018253	ENSCHIG00000006146	FGB (ENSCHIG00000014958)	PLRG1 (ENSCHIG00000014074)	SFRP2 (ENSCHIG00000022955)	RNF175 (ENSCHIG00000021987)	TLR2 (ENSCHIG00000025899)	TMEM131L (ENSCHIG00000020096)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00390000017845.h #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438
Chiroptera	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.h #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.h #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Greater horseshoe bat	MODERN SPECIES	27	HMGCL (ENSRFEG00010001760) #8	FUCA1 (ENSRFEG00010001794) #9	CNR2 (ENSRFEG00010001808) #10	ENSRFEG00010001822	PNRC2 (ENSRFEG00010001834) #11	SRSF10 (ENSRFEG00010001865) #12	ENSRFEG00010001898	MYOM3 (ENSRFEG00010001916) #13	IL22RA1 (ENSRFEG00010001972) #14	IFNLR1 (ENSRFEG00010001999) #15	GRHL3 (ENSRFEG00010002078) #16	STPG1 (ENSRFEG00010002240) #18	NIPAL3 (ENSRFEG00010002269) #19	RCAN3 (ENSRFEG00010002325) #20	NCMAP (ENSRFEG00010002384) #21	SRRM1 (ENSRFEG00010002423) #22	CLIC4 (ENSRFEG00010002473) #23	RUNX3 (ENSRFEG00010002500) #24	SYF2 (ENSRFEG00010002536) #27	RSRP1 (ENSRFEG00010002559) #28	TMEM50A (ENSRFEG00010002579) #29	ENSRFEG00010002597 #30	MACO1 (ENSRFEG00010002636) #31	LDLRAP1 (ENSRFEG00010002681) #32	MAN1C1 (ENSRFEG00010002833) #34	SELENON (ENSRFEG00010003076) #35	MTFR1L (ENSRFEG00010003144) #36	AUNIP (ENSRFEG00010003162) #37	PAQR7 (ENSRFEG00010003176)	STMN1 (ENSRFEG00010003199)	PAFAH2 (ENSRFEG00010003219)
Microbat	MODERN SPECIES	1474											ENSMLUG00000012056 #16	STPG1 (ENSMLUG00000012072) #18	NIPAL3 (ENSMLUG00000012077) #19	RCAN3 (ENSMLUG00000012084) #20	NCMAP (ENSMLUG00000006243) #21	SRRM1 (ENSMLUG00000006246) #22	CLIC4 (ENSMLUG00000001165) #23	RUNX3 (ENSMLUG00000003395) #24
Megabat	MODERN SPECIES	1606											GRHL3 (ENSPVAG00000005827) #16	STPG1 (ENSPVAG00000005828) #18	NIPAL3 (ENSPVAG00000005829) #19	RCAN3 (ENSPVAG00000005833) #20	NCMAP (ENSPVAG00000005835) #21	SRRM1 (ENSPVAG00000005836) #22	CLIC4 (ENSPVAG00000005838) #23	RUNX3 (ENSPVAG00000005839) #24	SYF2 (ENSPVAG00000005841) #27	RSRP1 (ENSPVAG00000005842) #28
Equus	ANCESTRAL SPECIES	2	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Horse	MODERN SPECIES	11	GALE (ENSECAG00000025140) #7	HMGCL (ENSECAG00000025131) #8	FUCA1 (ENSECAG00000024652) #9	CNR2 (ENSECAG00000005682) #10	PNRC2 (ENSECAG00000024629) #11	SRSF10 (ENSECAG00000023709) #12	ENSECAG00000050629	MYOM3 (ENSECAG00000021387) #13	IL22RA1 (ENSECAG00000016232) #14	IFNLR1 (ENSECAG00000013289) #15	GRHL3 (ENSECAG00000009866) #16	STPG1 (ENSECAG00000006581) #18	NIPAL3 (ENSECAG00000022826) #19	RCAN3 (ENSECAG00000020134) #20	NCMAP (ENSECAG00000042902) #21	SRRM1 (ENSECAG00000026981) #22	CLIC4 (ENSECAG00000016168) #23	RUNX3 (ENSECAG00000014360) #24	ENSECAG00000012023 #27	ENSECAG00000010440 #27	RSRP1 (ENSECAG00000007744) #28	TMEM50A (ENSECAG00000022212) #29	ENSECAG00000013140 #30	MACO1 (ENSECAG00000002018) #31	LDLRAP1 (ENSECAG00000019441) #32	MAN1C1 (ENSECAG00000014244) #34	SELENON (ENSECAG00000011412) #35	MTFR1L (ENSECAG00000008719) #36	ENSECAG00000051034	ENSECAG00000050748	AUNIP (ENSECAG00000007562) #37
Donkey	MODERN SPECIES	25	GALE (ENSEASG00005004377) #7	HMGCL (ENSEASG00005004364) #8	FUCA1 (ENSEASG00005004361) #9	CNR2 (ENSEASG00005027682) #10	ENSEASG00005004353	PNRC2 (ENSEASG00005028450) #11	SRSF10 (ENSEASG00005031579) #12	MYOM3 (ENSEASG00005004342) #13	IL22RA1 (ENSEASG00005004336) #14	IFNLR1 (ENSEASG00005004332) #15	GRHL3 (ENSEASG00005004315) #16	STPG1 (ENSEASG00005004298) #18	NIPAL3 (ENSEASG00005004287) #19	RCAN3 (ENSEASG00005004277) #20	ENSEASG00005031143 #21	SRRM1 (ENSEASG00005004270) #22	CLIC4 (ENSEASG00005004261) #23	RUNX3 (ENSEASG00005034237) #24	ENSEASG00005032869 #27	ENSEASG00005004224 #27	RSRP1 (ENSEASG00005004216) #28	TMEM50A (ENSEASG00005038339) #29	ENSEASG00005004204 #30	MACO1 (ENSEASG00005004196) #31	ENSEASG00005004192	LDLRAP1 (ENSEASG00005004188) #32	MAN1C1 (ENSEASG00005004181) #34	SELENON (ENSEASG00005004172) #35	MTFR1L (ENSEASG00005004168) #36	AUNIP (ENSEASG00005004165) #37	PAQR7 (ENSEASG00005037634)
Carnivora	DUPLICATION
Carnivora	DUPLICATION
Carnivora	ANCESTRAL SPECIES																	ENSGT00730000111080.b.i.a #22
Felidae	ANCESTRAL SPECIES	12	ENSGT00730000111366	ENSGT00390000012182	ENSGT00940000161825	ENSGT00940000158388	ENSGT00940000156803	ENSGT00970000197053	ENSGT00950000182974.a.a.a.a	ENSGT00950000183189.a.b.b	ENSGT00910000146020	ENSGT00940000165847	ENSGT00940000161248	ENSGT00940000165902.a.a	ENSGT00940000160971	ENSGT00940000162721	ENSGT00940000164798	ENSGT00730000111080.b.i.a #22	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00390000002517.a.b.b.d	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000163347	ENSGT00940000162864.b	ENSGT00940000160788	ENSGT00940000162539	ENSGT00940000163390	ENSGT00940000153425.a.a.b.b	ENSGT00940000158723	ENSGT01070000253816.a.b
Panthera	ANCESTRAL SPECIES	52			ENSGT00940000161825	ENSGT00390000012182	ENSGT00940000156803	ENSGT00970000197053	ENSGT00950000182974.a.a.a.a	ENSGT00950000183189.a.b.b	ENSGT00910000146020	ENSGT00940000165847	ENSGT00940000161248	ENSGT00940000165902.a.a	ENSGT00940000160971	ENSGT00940000162721	ENSGT00940000164798	ENSGT00730000111080.b.i.a #22	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00390000002517.a.b.b.d	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000163347	ENSGT00940000162864.b	ENSGT00940000160788	ENSGT00940000162539	ENSGT00940000163390	ENSGT00940000153425.a.a.b.b	ENSGT00940000158723	ENSGT01070000253816.a.b
Panthera_a	ANCESTRAL SPECIES	61			ENSGT00940000161825	ENSGT00390000012182	ENSGT00940000156803	ENSGT00970000197053	ENSGT00950000182974.a.a.a.a	ENSGT00950000183189.a.b.b	ENSGT00910000146020	ENSGT00940000165847	ENSGT00940000161248	ENSGT00940000165902.a.a	ENSGT00940000160971	ENSGT00940000162721	ENSGT00940000164798	ENSGT00730000111080.b.i.a #22	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00940000158878	ENSGT00390000002517.a.b.b.d	ENSGT00940000156974	ENSGT00940000159516	ENSGT00940000163347	ENSGT00940000162864.b	ENSGT00940000160788	ENSGT00940000162539	ENSGT00940000163390	ENSGT00940000153425.a.a.b.b	ENSGT00940000158723	ENSGT01070000253816.a.b
lion	MODERN SPECIES	88	GABRE (ENSPLOG00000005892)	GABRA3 (ENSPLOG00000005934)	ENSPLOG00000005970	GABRQ (ENSPLOG00000005996)	IDS (ENSPLOG00000006056)	ENSPLOG00000006094	AFF2 (ENSPLOG00000006146)	FMR1 (ENSPLOG00000006246)	ENSPLOG00000006302	ENSPLOG00000006349	SLITRK2 (ENSPLOG00000006369)	ENSPLOG00000006380	SLITRK4 (ENSPLOG00000006403)	LDOC1 (ENSPLOG00000006428)	ENSPLOG00000006437	ENSPLOG00000006454 #22	SOX3 (ENSPLOG00000006478)	ENSPLOG00000006490	ENSPLOG00000006507	ATP11C (ENSPLOG00000006614)	MCF2 (ENSPLOG00000007144)	F9 (ENSPLOG00000007909)	ENSPLOG00000008035	ENSPLOG00000008127	ENSPLOG00000008157	ZIC3 (ENSPLOG00000008170)	ENSPLOG00000008216	GPR101 (ENSPLOG00000008253)	ENSPLOG00000008345	RBMX (ENSPLOG00000008797)	ARHGEF6 (ENSPLOG00000008877)
Tiger	MODERN SPECIES	587															LDOC1 (ENSPTIG00000002231)	ENSPTIG00000022093 #22	ATP11C (ENSPTIG00000017162)	MCF2 (ENSPTIG00000015330)	F9 (ENSPTIG00000013754)	ENSPTIG00000013037	ENSPTIG00000001144	ENSPTIG00000000023	RBMXL1 (ENSPTIG00000021543)	ARHGEF6 (ENSPTIG00000020386)	CD40LG (ENSPTIG00000018836)	ENSPTIG00000018632	HTATSF1 (ENSPTIG00000016887)	BRS3 (ENSPTIG00000016297)	ADGRG4 (ENSPTIG00000008512)	MAP7D3 (ENSPTIG00000019671)	SLC9A6 (ENSPTIG00000021884)
Cat	MODERN SPECIES	252	ENSFCAG00000049417 #33	AFF2 (ENSFCAG00000004117)	ENSFCAG00000037477	ENSFCAG00000051077	ENSFCAG00000038940	FMR1 (ENSFCAG00000007228)	ENSFCAG00000049061	ENSFCAG00000024773	ENSFCAG00000052728	ENSFCAG00000031974	ENSFCAG00000051885	SLITRK4 (ENSFCAG00000040385)	LDOC1 (ENSFCAG00000024705)	ENSFCAG00000023837	ENSFCAG00000046108	ENSFCAG00000044640 #22	ENSFCAG00000052174	ENSFCAG00000053714	ENSFCAG00000028841	ENSFCAG00000047263	ATP11C (ENSFCAG00000012377)	ENSFCAG00000006072	MCF2 (ENSFCAG00000007214)	F9 (ENSFCAG00000007298)	FGF13 (ENSFCAG00000022557)	ZIC3 (ENSFCAG00000025684)	GPR101 (ENSFCAG00000043264)	TM9SF5 (ENSFCAG00000024179)	RBMX (ENSFCAG00000004779)	ARHGEF6 (ENSFCAG00000004169)	CD40LG (ENSFCAG00000039949)
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01100000263986	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.i.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Caniformia	ANCESTRAL SPECIES	2	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b.e.b.a #11	ENSGT00990000204354	ENSGT00530000063881.a.b.e.b.b #11	ENSGT01100000263986	ENSGT00530000063881.a.b.f #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.i.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b.e.b.b #11	ENSGT01100000263986	ENSGT00530000063881.a.b.f #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.i.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Ursidae	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01100000263986	ENSGT00530000063881.a.b.f #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.i.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Giant Panda	MODERN SPECIES	11	GALE (ENSAMEG00000009764) #7	HMGCL (ENSAMEG00000009804) #8	FUCA1 (ENSAMEG00000009835) #9	CNR2 (ENSAMEG00000020204) #10	ENSAMEG00000027433	PNRC2 (ENSAMEG00000020205) #11	SRSF10 (ENSAMEG00000009869) #12	MYOM3 (ENSAMEG00000009891) #13	IL22RA1 (ENSAMEG00000009970) #14	ENSAMEG00000009975 #15	GRHL3 (ENSAMEG00000009982) #16	STPG1 (ENSAMEG00000010024) #18	NIPAL3 (ENSAMEG00000010038) #19	RCAN3 (ENSAMEG00000010061) #20	NCMAP (ENSAMEG00000030328) #21	SRRM1 (ENSAMEG00000010075) #22	CLIC4 (ENSAMEG00000010080) #23	RUNX3 (ENSAMEG00000024625) #24	ENSAMEG00000010115 #27	ENSAMEG00000030094 #27	RSRP1 (ENSAMEG00000030675) #28	TMEM50A (ENSAMEG00000010163) #29	ENSAMEG00000010178 #30	MACO1 (ENSAMEG00000010212) #31	LDLRAP1 (ENSAMEG00000010238) #32	MAN1C1 (ENSAMEG00000010263) #34	SELENON (ENSAMEG00000010280) #35	MTFR1L (ENSAMEG00000010285) #36	AUNIP (ENSAMEG00000010293) #37	PAQR7 (ENSAMEG00000020206)	STMN1 (ENSAMEG00000010298)
Ursus	ANCESTRAL SPECIES		ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b.f #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978.c #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.i.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Polar bear	MODERN SPECIES	189	ELOA (ENSUMAG00000013208)	PITHD1 (ENSUMAG00000013205)	LYPLA2 (ENSUMAG00000013201)	HMGCL (ENSUMAG00000013193) #8	FUCA1 (ENSUMAG00000013190) #9	PNRC2 (ENSUMAG00000013185) #11	SRSF10 (ENSUMAG00000013183) #12	MYOM3 (ENSUMAG00000013158) #13	IL22RA1 (ENSUMAG00000013154) #14	IFNLR1 (ENSUMAG00000013152) #15	GRHL3 (ENSUMAG00000013146) #16	STPG1 (ENSUMAG00000013144) #18	NIPAL3 (ENSUMAG00000013130) #19	RCAN3 (ENSUMAG00000013127) #20	NCMAP (ENSUMAG00000013124) #21	SRRM1 (ENSUMAG00000013121) #22	CLIC4 (ENSUMAG00000013116) #23	ENSUMAG00000013115 #24	SYF2 (ENSUMAG00000013108) #27	TMEM50A (ENSUMAG00000013098) #29	ENSUMAG00000013091 #30	MACO1 (ENSUMAG00000013072) #31	LDLRAP1 (ENSUMAG00000013068) #32	MAN1C1 (ENSUMAG00000012846) #34	ENSUMAG00000012822 #35	MTFR1L (ENSUMAG00000012819) #36	AUNIP (ENSUMAG00000012816) #37	PAQR7 (ENSUMAG00000012813)	STMN1 (ENSUMAG00000012809)	PAFAH2 (ENSUMAG00000012805)	EXTL1 (ENSUMAG00000012796)
Mustelinae	ANCESTRAL SPECIES		ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00990000204354	ENSGT00530000063881.a.b.e.b.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.i.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Ferret	DUPLICATION
Ferret	DUPLICATION
Ferret	MODERN SPECIES	167	LYPLA2 (ENSMPUG00000015860)	GALE (ENSMPUG00000015848) #7	HMGCL (ENSMPUG00000015847) #8	FUCA1 (ENSMPUG00000015846) #9	CNR2 (ENSMPUG00000018822) #10	SRSF10 (ENSMPUG00000015845) #12	MYOM3 (ENSMPUG00000015844) #13	IL22RA1 (ENSMPUG00000015843) #14	IFNLR1 (ENSMPUG00000015842) #15	GRHL3 (ENSMPUG00000015840) #16	STPG1 (ENSMPUG00000015838) #18	NIPAL3 (ENSMPUG00000015837) #19	RCAN3 (ENSMPUG00000015835) #20	NCMAP (ENSMPUG00000015833) #21	ENSMPUG00000015831 #22	ENSMPUG00000015830 #22	CLIC4 (ENSMPUG00000015829) #23	RUNX3 (ENSMPUG00000015804) #24	ENSMPUG00000015802 #27	ENSMPUG00000015801 #27	RSRP1 (ENSMPUG00000015796) #28	ENSMPUG00000015794 #29	ENSMPUG00000015793 #30	MACO1 (ENSMPUG00000015792) #31	LDLRAP1 (ENSMPUG00000015779) #32	MAN1C1 (ENSMPUG00000015777) #34	MTFR1L (ENSMPUG00000015776) #36	AUNIP (ENSMPUG00000015775) #37	PAQR7 (ENSMPUG00000018819)	STMN1 (ENSMPUG00000015774)	PAFAH2 (ENSMPUG00000015773)
Ferret	MODERN SPECIES	167	PITHD1 (ENSMPUG00000015871)	LYPLA2 (ENSMPUG00000015860)	GALE (ENSMPUG00000015848) #7	HMGCL (ENSMPUG00000015847) #8	FUCA1 (ENSMPUG00000015846) #9	CNR2 (ENSMPUG00000018822) #10	SRSF10 (ENSMPUG00000015845) #12	MYOM3 (ENSMPUG00000015844) #13	IL22RA1 (ENSMPUG00000015843) #14	IFNLR1 (ENSMPUG00000015842) #15	GRHL3 (ENSMPUG00000015840) #16	STPG1 (ENSMPUG00000015838) #18	NIPAL3 (ENSMPUG00000015837) #19	RCAN3 (ENSMPUG00000015835) #20	NCMAP (ENSMPUG00000015833) #21	ENSMPUG00000015831 #22	ENSMPUG00000015830 #22	CLIC4 (ENSMPUG00000015829) #23	RUNX3 (ENSMPUG00000015804) #24	ENSMPUG00000015802 #27	ENSMPUG00000015801 #27	RSRP1 (ENSMPUG00000015796) #28	ENSMPUG00000015794 #29	ENSMPUG00000015793 #30	MACO1 (ENSMPUG00000015792) #31	LDLRAP1 (ENSMPUG00000015779) #32	MAN1C1 (ENSMPUG00000015777) #34	MTFR1L (ENSMPUG00000015776) #36	AUNIP (ENSMPUG00000015775) #37	PAQR7 (ENSMPUG00000018819)	STMN1 (ENSMPUG00000015774)
Ferret	MODERN SPECIES	395				ENSMPUG00000019373	MAP2K3 (ENSMPUG00000000007)	NATD1 (ENSMPUG00000000008)	TMEM11 (ENSMPUG00000000009)	DHRS7B (ENSMPUG00000000010)	USP22 (ENSMPUG00000000011)	TNFRSF13B (ENSMPUG00000000012)	ENSMPUG00000000013	ENSMPUG00000000014	PLD6 (ENSMPUG00000000015)	FLCN (ENSMPUG00000000016)	COPS3 (ENSMPUG00000000017)	ENSMPUG00000000018 #22	NT5M (ENSMPUG00000000019)	MED9 (ENSMPUG00000000020)	RASD1 (ENSMPUG00000000021)	PEMT (ENSMPUG00000000022)	RAI1 (ENSMPUG00000000023)	ENSMPUG00000019375	SREBF1 (ENSMPUG00000000024)	TOM1L2 (ENSMPUG00000000025)	DRC3 (ENSMPUG00000000026)	ATPAF2 (ENSMPUG00000000027)	GID4 (ENSMPUG00000000028)	DRG2 (ENSMPUG00000000029)	MYO15A (ENSMPUG00000000030)	ENSMPUG00000000031	ALKBH5 (ENSMPUG00000000032)
American mink	MODERN SPECIES	9	HMGCL (ENSNVIG00000023029) #8	FUCA1 (ENSNVIG00000023036) #9	CNR2 (ENSNVIG00000023039) #10	ENSNVIG00000023040	ENSNVIG00000023042 #11	ENSNVIG00000023043	SRSF10 (ENSNVIG00000023044) #12	MYOM3 (ENSNVIG00000023060) #13	IL22RA1 (ENSNVIG00000023071) #14	ENSNVIG00000023081 #15	G3XAF0 (ENSNVIG00000023092) #16	STPG1 (ENSNVIG00000023105) #18	NIPAL3 (ENSNVIG00000023120) #19	RCAN3 (ENSNVIG00000023123) #20	CA130 (ENSNVIG00000023144) #21	SRRM1 (ENSNVIG00000023151) #22	CLIC4 (ENSNVIG00000023177) #23	RUNX3 (ENSNVIG00000023179) #24	ENSNVIG00000023193 #27	ENSNVIG00000023198 #27	ENSNVIG00000023204	ENSNVIG00000023207 #29	ENSNVIG00000023223 #30	MACO1 (ENSNVIG00000023540) #31	LDLRAP1 (ENSNVIG00000023545) #32	MAN1C1 (ENSNVIG00000023546) #34	SELENON (ENSNVIG00000023550) #35	FA54B (ENSNVIG00000023557) #36	AUNIP (ENSNVIG00000023565) #37	PAQR7 (ENSNVIG00000023568)	STMN1 (ENSNVIG00000023571)
Canidae	ANCESTRAL SPECIES	14	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b.e.b.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.i.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Canis_lupus	DUPLICATION
Canis_lupus	ANCESTRAL SPECIES	6	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b.e.b.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.i.b.c #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Dog	MODERN SPECIES	11	PITHD1 (ENSCAFG00845014919)	LYPLA2 (ENSCAFG00845014869)	GALE (ENSCAFG00845014844) #7	HMGCL (ENSCAFG00845014812) #8	FUCA1 (ENSCAFG00845014722) #9	CNR2 (ENSCAFG00845014681) #10	ENSCAFG00845014636 #11	SRSF10 (ENSCAFG00845014602) #12	MYOM3 (ENSCAFG00845014559) #13	IL22RA1 (ENSCAFG00845014526) #14	IFNLR1 (ENSCAFG00845014506) #15	GRHL3 (ENSCAFG00845014434) #16	STPG1 (ENSCAFG00845014384) #18	NIPAL3 (ENSCAFG00845014315) #19	RCAN3 (ENSCAFG00845014238) #20	SRRM1 (ENSCAFG00845014121) #22	CLIC4 (ENSCAFG00845014085) #23	RUNX3 (ENSCAFG00845014056) #24	ENSCAFG00845014028 #27	ENSCAFG00845014016 #27	RSRP1 (ENSCAFG00845013985) #28	TMEM50A (ENSCAFG00845013963) #29	RHCE (ENSCAFG00845013884) #30	MACO1 (ENSCAFG00845013803) #31	LDLRAP1 (ENSCAFG00845013761) #32	MAN1C1 (ENSCAFG00845013691) #34	SELENON (ENSCAFG00845013639) #35	MTFR1L (ENSCAFG00845013602) #36	AUNIP (ENSCAFG00845013577) #37	PAQR7 (ENSCAFG00845013560)	STMN1 (ENSCAFG00845013518)
Dingo	MODERN SPECIES	41	LYPLA2 (ENSCAFG00020020050)	GALE (ENSCAFG00020020426) #7	HMGCL (ENSCAFG00020020448) #8	FUCA1 (ENSCAFG00020020481) #9	CNR2 (ENSCAFG00020020792) #10	ENSCAFG00020020794 #11	SRSF10 (ENSCAFG00020020795) #12	MYOM3 (ENSCAFG00020020819) #13	IL22RA1 (ENSCAFG00020020838) #14	IFNLR1 (ENSCAFG00020020851) #15	GRHL3 (ENSCAFG00020020873) #16	STPG1 (ENSCAFG00020020900) #18	NIPAL3 (ENSCAFG00020020911) #19	RCAN3 (ENSCAFG00020020917) #20	NCMAP (ENSCAFG00020020923) #21	ENSCAFG00020020948 #22	CLIC4 (ENSCAFG00020021078) #23	RUNX3 (ENSCAFG00020021086) #24	ENSCAFG00020021091 #27	ENSCAFG00020021094 #27	RSRP1 (ENSCAFG00020021098) #28	TMEM50A (ENSCAFG00020021099) #29	ENSCAFG00020021106 #30	MACO1 (ENSCAFG00020021111) #31	LDLRAP1 (ENSCAFG00020021133) #32	MAN1C1 (ENSCAFG00020021157) #34	SELENON (ENSCAFG00020021164) #35	MTFR1L (ENSCAFG00020021179) #36	AUNIP (ENSCAFG00020021184) #37	PAQR7 (ENSCAFG00020021189)	STMN1 (ENSCAFG00020021191)
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00730000111080.b.i.b.d #22
Dingo	MODERN SPECIES	67																ENSCAFG00020000003 #22
Red fox	MODERN SPECIES	92	LYPLA2 (ENSVVUG00000026893)	GALE (ENSVVUG00000026896) #7	HMGCL (ENSVVUG00000026898) #8	FUCA1 (ENSVVUG00000026900) #9	CNR2 (ENSVVUG00000026902) #10	PNRC2 (ENSVVUG00000026903) #11	SRSF10 (ENSVVUG00000026904) #12	MYOM3 (ENSVVUG00000026907) #13	IL22RA1 (ENSVVUG00000026914) #14	IFNLR1 (ENSVVUG00000026916) #15	GRHL3 (ENSVVUG00000026921) #16	STPG1 (ENSVVUG00000026938) #18	NIPAL3 (ENSVVUG00000026941) #19	RCAN3 (ENSVVUG00000026946) #20	NCMAP (ENSVVUG00000026947) #21	SRRM1 (ENSVVUG00000026966) #22	CLIC4 (ENSVVUG00000027166) #23	ENSVVUG00000027170 #24	SYF2 (ENSVVUG00000027175) #27	ENSVVUG00000027181 #27	RSRP1 (ENSVVUG00000027183) #28	TMEM50A (ENSVVUG00000027187) #29	ENSVVUG00000027188 #30	ENSVVUG00000027192 #31	ENSVVUG00000027236	MON1B (ENSVVUG00000027241)	ADAMTS18 (ENSVVUG00000027276)	NUDT7 (ENSVVUG00000027350)	VAT1L (ENSVVUG00000027352)	CLEC3A (ENSVVUG00000027354)	ENSVVUG00000027356
Felidae	ANCESTRAL SPECIES	18	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01100000263986	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.i.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Panthera	ANCESTRAL SPECIES	4	ENSGT00490000043398	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01100000263986	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.i.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Tiger	MODERN SPECIES	187	ENSPTIG00000021824	LYPLA2 (ENSPTIG00000021650)	GALE (ENSPTIG00000020604) #7	HMGCL (ENSPTIG00000019236) #8	FUCA1 (ENSPTIG00000018718) #9	ENSPTIG00000017652	SRSF10 (ENSPTIG00000014137) #12	MYOM3 (ENSPTIG00000011472) #13	IL22RA1 (ENSPTIG00000010118) #14	IFNLR1 (ENSPTIG00000001878) #15	GRHL3 (ENSPTIG00000018353) #16	STPG1 (ENSPTIG00000016802) #18	NIPAL3 (ENSPTIG00000014687) #19	RCAN3 (ENSPTIG00000012025) #20	NCMAP (ENSPTIG00000011435) #21	ENSPTIG00000008778 #22	CLIC4 (ENSPTIG00000008083) #23	ENSPTIG00000007036 #27	ENSPTIG00000005711 #27	TMEM50A (ENSPTIG00000004884) #29	ENSPTIG00000015194 #30	MACO1 (ENSPTIG00000011078) #31	LDLRAP1 (ENSPTIG00000010439) #32	MAN1C1 (ENSPTIG00000005865) #34	SELENON (ENSPTIG00000022104) #35	MTFR1L (ENSPTIG00000021874) #36	AUNIP (ENSPTIG00000021670) #37	STMN1 (ENSPTIG00000020918)	ENSPTIG00000001971	PAFAH2 (ENSPTIG00000020048)
Panthera_a	ANCESTRAL SPECIES	14	ENSGT00490000043398	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01100000263986	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.i.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.g.a #27	ENSGT00390000017845.g.b #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
leopard	MODERN SPECIES	37	GALE (ENSPPRG00000006979) #7	HMGCL (ENSPPRG00000006454) #8	FUCA1 (ENSPPRG00000006290) #9	CNR2 (ENSPPRG00000021440) #10	ENSPPRG00000006224	ENSPPRG00000005806 #12	ENSPPRG00000005415	MYOM3 (ENSPPRG00000005245) #13	IL22RA1 (ENSPPRG00000004976) #14	IFNLR1 (ENSPPRG00000004546) #15	GRHL3 (ENSPPRG00000003815) #16	STPG1 (ENSPPRG00000003504) #18	NIPAL3 (ENSPPRG00000003415) #19	RCAN3 (ENSPPRG00000003225) #20	NCMAP (ENSPPRG00000002624) #21	SRRM1 (ENSPPRG00000002509) #22	CLIC4 (ENSPPRG00000002006) #23	RUNX3 (ENSPPRG00000001924) #24	ENSPPRG00000001651 #27	ENSPPRG00000001638 #27	RSRP1 (ENSPPRG00000001204) #28	TMEM50A (ENSPPRG00000000857) #29	ENSPPRG00000000586 #30	MACO1 (ENSPPRG00000000258) #31	LDLRAP1 (ENSPPRG00000000074) #32	MAN1C1 (ENSPPRG00000022702) #34	SELENON (ENSPPRG00000022102) #35	MTFR1L (ENSPPRG00000019260) #36	AUNIP (ENSPPRG00000017004) #37	PAQR7 (ENSPPRG00000021047)	STMN1 (ENSPPRG00000016135)
lion	MODERN SPECIES	8	GALE (ENSPLOG00000015230) #7	HMGCL (ENSPLOG00000015136) #8	FUCA1 (ENSPLOG00000015034) #9	CNR2 (ENSPLOG00000015018) #10	ENSPLOG00000014980	PNRC2 (ENSPLOG00000014964) #11	SRSF10 (ENSPLOG00000014940) #12	MYOM3 (ENSPLOG00000014604) #13	IL22RA1 (ENSPLOG00000014491) #14	ENSPLOG00000014455 #15	GRHL3 (ENSPLOG00000014191) #16	STPG1 (ENSPLOG00000014029) #18	NIPAL3 (ENSPLOG00000013946) #19	RCAN3 (ENSPLOG00000013806) #20	NCMAP (ENSPLOG00000013758) #21	ENSPLOG00000013665 #22	CLIC4 (ENSPLOG00000013602) #23	RUNX3 (ENSPLOG00000013543) #24	ENSPLOG00000013477 #27	ENSPLOG00000013438 #27	RSRP1 (ENSPLOG00000013415) #28	TMEM50A (ENSPLOG00000013372) #29	ENSPLOG00000013211 #30	MACO1 (ENSPLOG00000013097) #31	LDLRAP1 (ENSPLOG00000013029) #32	MAN1C1 (ENSPLOG00000012845) #34	SELENON (ENSPLOG00000012695) #35	AUNIP (ENSPLOG00000012594) #37	MTFR1L (ENSPLOG00000012537) #36	PAQR7 (ENSPLOG00000012514)	STMN1 (ENSPLOG00000012470)
Cat	MODERN SPECIES	239	PITHD1 (ENSFCAG00000043044)	LYPLA2 (ENSFCAG00000031177)	GALE (ENSFCAG00000011819) #7	FUCA1 (ENSFCAG00000007927) #9	CNR2 (ENSFCAG00000012895) #10	ENSFCAG00000041805	PNRC2 (ENSFCAG00000052022) #11	SRSF10 (ENSFCAG00000045556) #12	MYOM3 (ENSFCAG00000006117) #13	IL22RA1 (ENSFCAG00000006118) #14	IFNLR1 (ENSFCAG00000042719) #15	GRHL3 (ENSFCAG00000019048) #16	STPG1 (ENSFCAG00000002066) #18	NIPAL3 (ENSFCAG00000002067) #19	RCAN3 (ENSFCAG00000041570) #20	SRRM1 (ENSFCAG00000000678) #22	CLIC4 (ENSFCAG00000044507) #23	RUNX3 (ENSFCAG00000036616) #24	ENSFCAG00000043095 #27	ENSFCAG00000010324 #27	RSRP1 (ENSFCAG00000029142) #28	TMEM50A (ENSFCAG00000012788) #29	ENSFCAG00000012789 #30	MACO1 (ENSFCAG00000012790) #31	LDLRAP1 (ENSFCAG00000036460) #32	MAN1C1 (ENSFCAG00000012792) #34	SELENON (ENSFCAG00000012793) #35	MTFR1L (ENSFCAG00000012794) #36	PAQR7 (ENSFCAG00000026046)	ENSFCAG00000040721	PAFAH2 (ENSFCAG00000012798)
Carnivora	ANCESTRAL SPECIES	82																ENSGT00730000111080.b.j #22	ENSGT00910000148394
Caniformia	ANCESTRAL SPECIES	108																ENSGT00730000111080.b.j #22	ENSGT00910000148394
Caniformia_b	ANCESTRAL SPECIES	122																ENSGT00730000111080.b.j #22	ENSGT00910000148394
Ursidae	ANCESTRAL SPECIES	147																ENSGT00730000111080.b.j #22	ENSGT00910000148394
Ursus	ANCESTRAL SPECIES	437																ENSGT00730000111080.b.j #22	ENSGT00910000148394
American black bear	MODERN SPECIES	7600																ENSUAMG00000011740 #22	ENSUAMG00000011738
Atlantogenata	ANCESTRAL SPECIES	4	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450.b #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.c #27	ENSGT00390000017845.d #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Xenarthra	ANCESTRAL SPECIES	27	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450.b #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.c #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37
Sloth	MODERN SPECIES	2594																SRRM1 (ENSCHOG00000000027) #22
Armadillo	MODERN SPECIES	2239	LYPLA2 (ENSDNOG00000011285)	GALE (ENSDNOG00000011299) #7	HMGCL (ENSDNOG00000038631) #8	ENSDNOG00000011323 #9	CNR2 (ENSDNOG00000011342) #10	PNRC2 (ENSDNOG00000023948) #11	ENSDNOG00000044047 #12	MYOM3 (ENSDNOG00000012772) #13	IL22RA1 (ENSDNOG00000045320) #14	ENSDNOG00000038570 #15	GRHL3 (ENSDNOG00000013939) #16	STPG1 (ENSDNOG00000032430) #18	NIPAL3 (ENSDNOG00000014003) #19	RCAN3 (ENSDNOG00000011357) #20	NCMAP (ENSDNOG00000000914) #21	SRRM1 (ENSDNOG00000049141) #22	ENSDNOG00000042215 #23	RUNX3 (ENSDNOG00000043493) #24	SYF2 (ENSDNOG00000047605) #27	ENSDNOG00000035528 #28	TMEM50A (ENSDNOG00000036245) #29	ENSDNOG00000017485 #30	MACO1 (ENSDNOG00000005372) #31	LDLRAP1 (ENSDNOG00000025498) #32	MAN1C1 (ENSDNOG00000046261) #34	SELENON (ENSDNOG00000015062) #35	MTFR1L (ENSDNOG00000015087) #36	AUNIP (ENSDNOG00000044053) #37
Afrotheria	ANCESTRAL SPECIES	15	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450.b #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.c #27	ENSGT00390000017845.d #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Tenrec	MODERN SPECIES	7509															NCMAP (ENSETEG00000006813) #21	SRRM1 (ENSETEG00000006817) #22
Afrotheria_a	ANCESTRAL SPECIES	15	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450.b #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845.c #27	ENSGT00390000017845.d #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a
Elephant	MODERN SPECIES	332	LYPLA2 (ENSLAFG00000017315)	GALE (ENSLAFG00000017319) #7	HMGCL (ENSLAFG00000017326) #8	FUCA1 (ENSLAFG00000015305) #9	CNR2 (ENSLAFG00000012676) #10	PNRC2 (ENSLAFG00000014701) #11	SRSF10 (ENSLAFG00000026905) #12	MYOM3 (ENSLAFG00000003712) #13	IL22RA1 (ENSLAFG00000003722) #14	IFNLR1 (ENSLAFG00000031890) #15	GRHL3 (ENSLAFG00000001618) #16	STPG1 (ENSLAFG00000001619) #18	NIPAL3 (ENSLAFG00000012374) #19	RCAN3 (ENSLAFG00000017638) #20	NCMAP (ENSLAFG00000014893) #21	SRRM1 (ENSLAFG00000013830) #22	CLIC4 (ENSLAFG00000017470) #23	RUNX3 (ENSLAFG00000008382) #24	ENSLAFG00000023150 #27	ENSLAFG00000030814 #27	RSRP1 (ENSLAFG00000022865) #28	TMEM50A (ENSLAFG00000014756) #29	ENSLAFG00000014759 #30	MACO1 (ENSLAFG00000001213) #31	LDLRAP1 (ENSLAFG00000001214) #32	MAN1C1 (ENSLAFG00000004643) #34	SELENON (ENSLAFG00000021561) #35	MTFR1L (ENSLAFG00000002306) #36	AUNIP (ENSLAFG00000022386) #37	PAQR7 (ENSLAFG00000000368)	ENSLAFG00000006089
Hyrax	MODERN SPECIES	6303															ENSPCAG00000015132	SRRM1 (ENSPCAG00000015138) #22
Marsupialia	ANCESTRAL SPECIES	10	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027.a.b	ENSGT00940000164027.a.a	ENSGT00940000164027.b	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c.j #9	ENSGT00440000035378.c.i #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027.a.b	ENSGT00940000164027.a.a	ENSGT00940000164027.b	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37
Diprotodontia	ANCESTRAL SPECIES	3	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c.j #9	ENSGT00440000035378.c.i #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027.a.b	ENSGT00940000164027.a.a	ENSGT00940000164027.b	ENSGT00390000005972 #35	ENSGT00950000183215.c.b.f #36	ENSGT00950000183215.c.b.e #36
Diprotodontia_a	ANCESTRAL SPECIES	4	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c.j #9	ENSGT00440000035378.c.i #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027.a.b	ENSGT00940000164027.a.a	ENSGT00940000164027.b	ENSGT00390000005972 #35	ENSGT00950000183215.c.b.e #36	ENSGT00390000003280 #37
Common wonbat	MODERN SPECIES	1084	HMGCL (ENSVURG00010023158) #8	ENSVURG00010023154 #9	ENSVURG00010023134 #9	CNR2 (ENSVURG00010023132) #10	PNRC2 (ENSVURG00010023129) #11	SRSF10 (ENSVURG00010023125) #12	MYOM3 (ENSVURG00010023115) #13	IL22RA1 (ENSVURG00010023112) #14	ENSVURG00010023111 #15	ENSVURG00010023110	GRHL3 (ENSVURG00010023106) #16	STPG1 (ENSVURG00010023104) #18	NIPAL3 (ENSVURG00010023099) #19	RCAN3 (ENSVURG00010023097) #20	NCMAP (ENSVURG00010023095) #21	SRRM1 (ENSVURG00010023088) #22	CLIC4 (ENSVURG00010023080) #23	ENSVURG00010023073	RUNX3 (ENSVURG00010023071) #24
koala	MODERN SPECIES	14	HMGCL (ENSPCIG00000014290) #8	ENSPCIG00000014280 #9	ENSPCIG00000014285 #9	CNR2 (ENSPCIG00000014279) #10	PNRC2 (ENSPCIG00000014271) #11	SRSF10 (ENSPCIG00000014270) #12	MYOM3 (ENSPCIG00000014267) #13	IL22RA1 (ENSPCIG00000014266) #14	ENSPCIG00000014263 #15	ENSPCIG00000014262	GRHL3 (ENSPCIG00000014261) #16	STPG1 (ENSPCIG00000032916) #18	NIPAL3 (ENSPCIG00000035044) #19	RCAN3 (ENSPCIG00000014253) #20	ENSPCIG00000014248 #21	SRRM1 (ENSPCIG00000009214) #22	CLIC4 (ENSPCIG00000014243) #23	RUNX3 (ENSPCIG00000008587) #24	SYF2 (ENSPCIG00000014235) #27	ENSPCIG00000014234 #28	TMEM50A (ENSPCIG00000014232) #29	ENSPCIG00000014231 #30	MACO1 (ENSPCIG00000006939) #31	LDLRAP1 (ENSPCIG00000006938) #32	MAN1C1 (ENSPCIG00000002306) #34	ENSPCIG00000002146	ENSPCIG00000002109	ENSPCIG00000002010	ENSPCIG00000025582 #35	ENSPCIG00000025581 #36	ENSPCIG00000025580 #37
Wallaby	MODERN SPECIES	3889																SRRM1 (ENSMEUG00000014704) #22
Tasmanian devil	MODERN SPECIES	2	LYPLA2 (ENSSHAG00000021428)	GALE (ENSSHAG00000029887) #7	HMGCL (ENSSHAG00000028160) #8	ENSSHAG00000026348 #9	ENSSHAG00000003797 #9	CNR2 (ENSSHAG00000021282) #10	PNRC2 (ENSSHAG00000028722) #11	SRSF10 (ENSSHAG00000022691) #12	MYOM3 (ENSSHAG00000003836) #13	ENSSHAG00000025716 #14	ENSSHAG00000006271 #15	GRHL3 (ENSSHAG00000008311) #16	STPG1 (ENSSHAG00000008655) #18	NIPAL3 (ENSSHAG00000022187) #19	RCAN3 (ENSSHAG00000027558) #20	SRRM1 (ENSSHAG00000011061) #22	CLIC4 (ENSSHAG00000023819) #23	ENSSHAG00000007152 #27	RSRP1 (ENSSHAG00000027987) #28	TMEM50A (ENSSHAG00000027571) #29	ENSSHAG00000007644 #30	MACO1 (ENSSHAG00000008209) #31	LDLRAP1 (ENSSHAG00000009345) #32	MAN1C1 (ENSSHAG00000030914) #34	ENSSHAG00000030486	ENSSHAG00000023982	ENSSHAG00000020846	ENSSHAG00000026081	MTFR1L (ENSSHAG00000008885) #36	ENSSHAG00000021774 #37	PAQR7 (ENSSHAG00000023909)
Opossum	DUPLICATION
Opossum	MODERN SPECIES	2	PLPP1 (ENSMODG00000019499)	MTREX (ENSMODG00000019494)	DHX29 (ENSMODG00000019487)	CCNO (ENSMODG00000019481)	MCIDAS (ENSMODG00000049862)	GPX8 (ENSMODG00000045617)	CDC20B (ENSMODG00000019478)	GZMA (ENSMODG00000019475)	ESM1 (ENSMODG00000019473)	ENSMODG00000019472	SNX18 (ENSMODG00000019470)	ENSMODG00000043169	HSPB3 (ENSMODG00000040935)	ARL15 (ENSMODG00000019467)	NDUFS4 (ENSMODG00000044297)	ENSMODG00000038652 #22	FST (ENSMODG00000019463)	MOCS2 (ENSMODG00000019459)	ITGA2 (ENSMODG00000019454)	ITGA1 (ENSMODG00000019448)	ISL1 (ENSMODG00000019439)	PARP8 (ENSMODG00000019436)	FAM151B (ENSMODG00000019426)	ENSMODG00000019425	ENSMODG00000019423	ENSMODG00000019421	RAD17 (ENSMODG00000019420)	MARVELD2 (ENSMODG00000019419)	OCLN (ENSMODG00000019417)	ENSMODG00000025598	ENSMODG00000020270
Opossum	MODERN SPECIES	3	ENSMODG00000012842	PITHD1 (ENSMODG00000012852)	LYPLA2 (ENSMODG00000012872)	HMGCL (ENSMODG00000012891) #8	FUCA1 (ENSMODG00000013008) #9	CNR2 (ENSMODG00000023904) #10	SRSF10 (ENSMODG00000013020) #12	MYOM3 (ENSMODG00000013043) #13	ENSMODG00000013049 #14	ENSMODG00000013053 #15	GRHL3 (ENSMODG00000013064) #16	STPG1 (ENSMODG00000013076) #18	NIPAL3 (ENSMODG00000013086) #19	RCAN3 (ENSMODG00000013089) #20	NCMAP (ENSMODG00000051523) #21	SRRM1 (ENSMODG00000013861) #22	CLIC4 (ENSMODG00000013939) #23	ENSMODG00000046366	ENSMODG00000013951 #27	RSRP1 (ENSMODG00000013955) #28	TMEM50A (ENSMODG00000038632) #29	ENSMODG00000013982 #30	MACO1 (ENSMODG00000013985) #31	LDLRAP1 (ENSMODG00000013990) #32	ENSMODG00000049139	MAN1C1 (ENSMODG00000013999) #34	ENSMODG00000025591	ENSMODG00000014009	ENSMODG00000037388 #35	MTFR1L (ENSMODG00000014017) #36	ENSMODG00000014020 #37
Platypus	DUPLICATION
Platypus	MODERN SPECIES	7	HMGCL (ENSOANG00000045129) #8	FUCA1 (ENSOANG00000036041) #9	CNR2 (ENSOANG00000006844) #10	ENSOANG00000046602	PNRC2 (ENSOANG00000044006) #11	SRSF10 (ENSOANG00000004308) #12	ENSOANG00000049301	MYOM3 (ENSOANG00000013487) #13	ENSOANG00000002209 #14	ENSOANG00000038626 #15	GRHL3 (ENSOANG00000002207) #16	ENSOANG00000043369 #18	NIPAL3 (ENSOANG00000036461) #19	RCAN3 (ENSOANG00000002204) #20	SRRM1 (ENSOANG00000002202) #22	ENSOANG00000048682 #22	CLIC4 (ENSOANG00000042082) #23	RUNX3 (ENSOANG00000038359) #24	SYF2 (ENSOANG00000043250) #27	ENSOANG00000009553 #29	ENSOANG00000038655 #30	MACO1 (ENSOANG00000000420) #31	LDLRAP1 (ENSOANG00000040256) #32	MAN1C1 (ENSOANG00000015845) #34	SELENON (ENSOANG00000050433) #35	MTFR1L (ENSOANG00000047049) #36	PAQR7 (ENSOANG00000048248)	STMN1 (ENSOANG00000001728)	PAFAH2 (ENSOANG00000014900)	SLC30A2 (ENSOANG00000014899)	TRIM63 (ENSOANG00000014898)
Platypus	MODERN SPECIES	7	GALE (ENSOANG00000039510) #7	HMGCL (ENSOANG00000045129) #8	FUCA1 (ENSOANG00000036041) #9	CNR2 (ENSOANG00000006844) #10	ENSOANG00000046602	PNRC2 (ENSOANG00000044006) #11	SRSF10 (ENSOANG00000004308) #12	ENSOANG00000049301	MYOM3 (ENSOANG00000013487) #13	ENSOANG00000002209 #14	ENSOANG00000038626 #15	GRHL3 (ENSOANG00000002207) #16	ENSOANG00000043369 #18	NIPAL3 (ENSOANG00000036461) #19	RCAN3 (ENSOANG00000002204) #20	SRRM1 (ENSOANG00000002202) #22	ENSOANG00000048682 #22	CLIC4 (ENSOANG00000042082) #23	RUNX3 (ENSOANG00000038359) #24	SYF2 (ENSOANG00000043250) #27	ENSOANG00000009553 #29	ENSOANG00000038655 #30	MACO1 (ENSOANG00000000420) #31	LDLRAP1 (ENSOANG00000040256) #32	MAN1C1 (ENSOANG00000015845) #34	SELENON (ENSOANG00000050433) #35	MTFR1L (ENSOANG00000047049) #36	PAQR7 (ENSOANG00000048248)	STMN1 (ENSOANG00000001728)	PAFAH2 (ENSOANG00000014900)	SLC30A2 (ENSOANG00000014899)
Sauria	ANCESTRAL SPECIES	23	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Lepidosauria	ANCESTRAL SPECIES	18	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Episquamata	ANCESTRAL SPECIES	7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Laterata	ANCESTRAL SPECIES	27							ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT01040000244696	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00950000183215.c.b #36	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000009214 #12	ENSPMRG00000009207	ENSPMRG00000009188 #12	ENSPMRG00000009176	ENSPMRG00000009167	ENSPMRG00000009163	ENSPMRG00000008699 #13	ENSPMRG00000008537 #13	ENSPMRG00000008512 #15	GRHL3 (ENSPMRG00000008496) #16	STPG1 (ENSPMRG00000008484) #18	ENSPMRG00000008477	NIPAL3 (ENSPMRG00000008470) #19	RCAN3 (ENSPMRG00000008462) #20	ENSPMRG00000008456	SRRM1 (ENSPMRG00000008427) #22	CLIC4 (ENSPMRG00000008403) #23	ENSPMRG00000008397	RUNX3 (ENSPMRG00000008387) #24	ENSPMRG00000008380	SYF2 (ENSPMRG00000008369) #27	RSRP1 (ENSPMRG00000008360) #28	TMEM50A (ENSPMRG00000008331) #29	ENSPMRG00000008283 #30	MACO1 (ENSPMRG00000008268) #31	LDLRAP1 (ENSPMRG00000008249) #32	MAN1C1 (ENSPMRG00000008227) #34	ENSPMRG00000008220	MTFR1L (ENSPMRG00000008209) #36	ENSPMRG00000008206	PAQR7 (ENSPMRG00000008201)
Argentine black and white tegu	MODERN SPECIES	53	PIGV (ENSSMRG00000002359)	ARID1A (ENSSMRG00000002346)	RPS6KA1 (ENSSMRG00000002310)	ENSSMRG00000002307	DHDDS (ENSSMRG00000002296)	LIN28A (ENSSMRG00000002255)	CRYBG2 (ENSSMRG00000001377)	UBXN11 (ENSSMRG00000001369)	SH3BGRL3 (ENSSMRG00000001362)	CEP85 (ENSSMRG00000001360)	ENSSMRG00000001359	CNKSR1 (ENSSMRG00000001354)	NIPAL3 (ENSSMRG00000001351) #19	RCAN3 (ENSSMRG00000001350) #20	NCMAP (ENSSMRG00000001348) #21	SRRM1 (ENSSMRG00000001330) #22	CLIC4 (ENSSMRG00000001327) #23	RUNX3 (ENSSMRG00000001311) #24	ENSSMRG00000001293	SYF2 (ENSSMRG00000001291) #27	RSRP1 (ENSSMRG00000001267) #28	TMEM50A (ENSSMRG00000001263) #29	ENSSMRG00000001254 #30	MACO1 (ENSSMRG00000001227) #31	LDLRAP1 (ENSSMRG00000001220) #32	MAN1C1 (ENSSMRG00000001206) #34	ENSSMRG00000001114	MTFR1L (ENSSMRG00000001098) #36	STMN1 (ENSSMRG00000001094)	PAFAH2 (ENSSMRG00000001086)	ENSSMRG00000001080
Toxicofera	ANCESTRAL SPECIES	24	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a	ENSGT00940000163960
Elapidae	ANCESTRAL SPECIES	9	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT01070000254078.h	ENSGT01070000254078.g	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a	ENSGT00940000163960
Elapidae_a	ANCESTRAL SPECIES	15	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT01070000254078.h	ENSGT01070000254078.g	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a	ENSGT00940000163960
Acanthophiinae	ANCESTRAL SPECIES	22	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT01070000254078.h	ENSGT01070000254078.g	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00990000211486	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a	ENSGT00940000163960
Mainland tiger snake	MODERN SPECIES	80													GRHL3 (ENSNSUG00000013000) #16	NIPAL3 (ENSNSUG00000013018) #19	RCAN3 (ENSNSUG00000013019) #20	SRRM1 (ENSNSUG00000013021) #22	CLIC4 (ENSNSUG00000013023) #23	RUNX3 (ENSNSUG00000013025) #24	TMEM50A (ENSNSUG00000013038) #29	ENSNSUG00000013040 #30	MACO1 (ENSNSUG00000013810) #31	LDLRAP1 (ENSNSUG00000013812) #32	MAN1C1 (ENSNSUG00000013814) #34	ENSNSUG00000013816 #35	MTFR1L (ENSNSUG00000013818) #36	PAQR7 (ENSNSUG00000013820)	STMN1 (ENSNSUG00000013821)	PAFAH2 (ENSNSUG00000013822)	ENSNSUG00000013823	SLC30A2 (ENSNSUG00000013824)	TRIM63 (ENSNSUG00000013825)
Eastern brown snake	MODERN SPECIES	19	HMGCL (ENSPTXG00000001730) #8	FUCA1 (ENSPTXG00000001724) #9	CNR2 (ENSPTXG00000001721) #10	PNRC2 (ENSPTXG00000001718) #11	SRSF10 (ENSPTXG00000001715) #12	ENSPTXG00000001714	ENSPTXG00000001712	ENSPTXG00000001710	MYOM3 (ENSPTXG00000001531) #13	ENSPTXG00000001501	GRHL3 (ENSPTXG00000001494) #16	STPG1 (ENSPTXG00000001488) #18	NIPAL3 (ENSPTXG00000005620) #19	RCAN3 (ENSPTXG00000005619) #20	NCMAP (ENSPTXG00000005618) #21	SRRM1 (ENSPTXG00000005617) #22	CLIC4 (ENSPTXG00000005616) #23	RUNX3 (ENSPTXG00000005594) #24	SYF2 (ENSPTXG00000005593) #27	ENSPTXG00000005592	TMEM50A (ENSPTXG00000005591) #29	ENSPTXG00000005590 #30	MACO1 (ENSPTXG00000005589) #31	LDLRAP1 (ENSPTXG00000005587) #32	MAN1C1 (ENSPTXG00000005585) #34	ENSPTXG00000005584	ENSPTXG00000005583 #35	MTFR1L (ENSPTXG00000005582) #36	PAQR7 (ENSPTXG00000005581)	STMN1 (ENSPTXG00000005580)	PAFAH2 (ENSPTXG00000005577)
Blue-lipped sea krait	MODERN SPECIES	5975															NCMAP (ENSLLTG00000005242) #21	SRRM1 (ENSLLTG00000005216) #22	CLIC4 (ENSLLTG00000005194) #23
Indian cobra	MODERN SPECIES	11	CNR2 (ENSNNAG00000006837) #10	PNRC2 (ENSNNAG00000006845) #11	SRSF10 (ENSNNAG00000006857) #12	ENSNNAG00000006871	ENSNNAG00000006880	ENSNNAG00000006903	MYOM3 (ENSNNAG00000006942) #13	IL22RA1 (ENSNNAG00000007030) #14	ENSNNAG00000007050	GRHL3 (ENSNNAG00000007074) #16	STPG1 (ENSNNAG00000007104) #18	ENSNNAG00000007158	NIPAL3 (ENSNNAG00000007183) #19	RCAN3 (ENSNNAG00000007243) #20	NCMAP (ENSNNAG00000007263) #21	ENSNNAG00000007281 #22	ENSNNAG00000007299	CLIC4 (ENSNNAG00000007318) #23	RUNX3 (ENSNNAG00000007339) #24	SYF2 (ENSNNAG00000007366) #27	TMEM50A (ENSNNAG00000007409) #29	ENSNNAG00000007432 #30	MACO1 (ENSNNAG00000007460) #31	LDLRAP1 (ENSNNAG00000007488) #32	MAN1C1 (ENSNNAG00000007503) #34	ENSNNAG00000007566	ENSNNAG00000007629 #35	MTFR1L (ENSNNAG00000007649) #36	PAQR7 (ENSNNAG00000007699)	STMN1 (ENSNNAG00000007722)	PAFAH2 (ENSNNAG00000007761)
Lizard	MODERN SPECIES	1076							ENSACAG00000001138	FGR (ENSACAG00000000905)	AHDC1 (ENSACAG00000017829)	WASF2 (ENSACAG00000017831)	MAP3K6 (ENSACAG00000017835)	SYTL1 (ENSACAG00000017840)	ENSACAG00000017843	ENSACAG00000017844	RCAN3 (ENSACAG00000017846) #20	SRRM1 (ENSACAG00000017848) #22	CLIC4 (ENSACAG00000017852) #23	RUNX3 (ENSACAG00000017855) #24
tuatara	MODERN SPECIES	334				PNRC2 (ENSSPUG00000016233) #11	SRSF10 (ENSSPUG00000016224) #12	ENSSPUG00000016216	ENSSPUG00000016203	MYOM3 (ENSSPUG00000016083) #13	ENSSPUG00000016057 #14	IFNLR1 (ENSSPUG00000016046) #15	GRHL3 (ENSSPUG00000016022) #16	STPG1 (ENSSPUG00000015972) #18	NIPAL3 (ENSSPUG00000015957) #19	RCAN3 (ENSSPUG00000015937) #20	NCMAP (ENSSPUG00000015925) #21	SRRM1 (ENSSPUG00000015890) #22	CLIC4 (ENSSPUG00000015765) #23	RUNX3 (ENSSPUG00000015722) #24
Archelosauria	ANCESTRAL SPECIES	25	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000160519	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00960000189517	ENSGT00940000161438	ENSGT01030000234597.a.a
Archosauria	ANCESTRAL SPECIES	22	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000160519	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00950000183215.c.b #36	ENSGT00960000189517	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Australian saltwater crocodile	MODERN SPECIES	57	LYPLA2 (ENSCPRG00005016486)	GALE (ENSCPRG00005016501) #7	HMGCL (ENSCPRG00005016550) #8	FUCA1 (ENSCPRG00005016551) #9	CNR2 (ENSCPRG00005016552) #10	PNRC2 (ENSCPRG00005016555) #11	SRSF10 (ENSCPRG00005016560) #12	ENSCPRG00005016562	MYOM3 (ENSCPRG00005016575) #13	ENSCPRG00005016621 #15	GRHL3 (ENSCPRG00005016628) #16	STPG1 (ENSCPRG00005016652) #18	NIPAL3 (ENSCPRG00005016660) #19	RCAN3 (ENSCPRG00005016665) #20	NCMAP (ENSCPRG00005016669) #21	SRRM1 (ENSCPRG00005016672) #22	ENSCPRG00005016682	CLIC4 (ENSCPRG00005016689) #23	ENSCPRG00005016698	RUNX3 (ENSCPRG00005016703) #24	ENSCPRG00005016707	SYF2 (ENSCPRG00005016709) #27	RSRP1 (ENSCPRG00005016713) #28	TMEM50A (ENSCPRG00005016717) #29	ENSCPRG00005016721 #30	MACO1 (ENSCPRG00005016725) #31	LDLRAP1 (ENSCPRG00005016731) #32	MAN1C1 (ENSCPRG00005016746) #34	ENSCPRG00005016779	MTFR1L (ENSCPRG00005016787) #36	PAQR7 (ENSCPRG00005016793)
Aves	ANCESTRAL SPECIES	28	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000160519	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00950000183215.c.b #36	ENSGT00960000189517	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
African ostrich	MODERN SPECIES	380	GALE (ENSSCUG00000001790) #7	HMGCL (ENSSCUG00000001796) #8	FUCA1 (ENSSCUG00000001801) #9	CNR2 (ENSSCUG00000001803) #10	ENSSCUG00000001804	PNRC2 (ENSSCUG00000001809) #11	SRSF10 (ENSSCUG00000001813) #12	ENSSCUG00000001817	MYOM3 (ENSSCUG00000001827) #13	IL22RA1 (ENSSCUG00000001835) #14	IFNLR1 (ENSSCUG00000001837) #15	GRHL3 (ENSSCUG00000001844) #16	STPG1 (ENSSCUG00000001852) #18	NIPAL3 (ENSSCUG00000001855) #19	NCMAP (ENSSCUG00000001859) #21	SRRM1 (ENSSCUG00000001863) #22	CLIC4 (ENSSCUG00000001865) #23	ENSSCUG00000001867 #24
Neognathae	ANCESTRAL SPECIES	26	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000160519	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00950000183215.c.b #36	ENSGT00960000189517	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Neognathae_b	ANCESTRAL SPECIES	26	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000160519	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00950000183215.c.b #36	ENSGT00960000189517	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Neognathae_c	ANCESTRAL SPECIES	31	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000160519	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00990000212016	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00950000183215.c.b #36	ENSGT00960000189517	ENSGT00940000161438	ENSGT01030000234597.a.a
Golden eagle	MODERN SPECIES	7	HMGCL (ENSACCG00020008306) #8	FUCA1 (ENSACCG00020008316) #9	CNR2 (ENSACCG00020008327) #10	ENSACCG00020008337	PNRC2 (ENSACCG00020008343) #11	SRSF10 (ENSACCG00020008355) #12	ENSACCG00020008361	ENSACCG00020008373	MYOM3 (ENSACCG00020008469) #13	ENSACCG00020008552	ENSACCG00020008567 #15	GRHL3 (ENSACCG00020008719) #16	NIPAL3 (ENSACCG00020008846) #19	RCAN3 (ENSACCG00020008867) #20	NCMAP (ENSACCG00020008894) #21	SRRM1 (ENSACCG00020008955) #22	CLIC4 (ENSACCG00020008992) #23	RUNX3 (ENSACCG00020009015) #24	ENSACCG00020009025	SYF2 (ENSACCG00020009036) #27	RSRP1 (ENSACCG00020009050) #28	TMEM50A (ENSACCG00020009075) #29	ENSACCG00020009090 #30	MACO1 (ENSACCG00020009110) #31	LDLRAP1 (ENSACCG00020009133) #32	MAN1C1 (ENSACCG00020009149) #34	ENSACCG00020009173	MTFR1L (ENSACCG00020009202) #36	ENSACCG00020009212	PAQR7 (ENSACCG00020009220)	STMN1 (ENSACCG00020009230)
Kakapo	MODERN SPECIES	6	TAF12 (ENSSHBG00005017463)	ENSSHBG00005017467	TRNAU1AP (ENSSHBG00005000886)	ENSSHBG00005005399	LUZP1 (ENSSHBG00005005420)	PNRC2 (ENSSHBG00005005519) #11	SRSF10 (ENSSHBG00005005544) #12	ENSSHBG00005005557	ENSSHBG00005005575	MYOM3 (ENSSHBG00005005632) #13	ENSSHBG00005005744 #15	GRHL3 (ENSSHBG00005005816) #16	NIPAL3 (ENSSHBG00005005852) #19	RCAN3 (ENSSHBG00005005886) #20	NCMAP (ENSSHBG00005005900) #21	SRRM1 (ENSSHBG00005005936) #22	CLIC4 (ENSSHBG00005005956) #23	RUNX3 (ENSSHBG00005005970) #24	ENSSHBG00005005984	SYF2 (ENSSHBG00005005999) #27	RSRP1 (ENSSHBG00005006017) #28	TMEM50A (ENSSHBG00005006030) #29	ENSSHBG00005006053 #30	MACO1 (ENSSHBG00005006097) #31	LDLRAP1 (ENSSHBG00005006122) #32	MAN1C1 (ENSSHBG00005006149) #34	ENSSHBG00005006191	MTFR1L (ENSSHBG00005006204) #36	STMN1 (ENSSHBG00005006218)	PAQR7 (ENSSHBG00005006235)	ENSSHBG00005006251
Passeriformes	ANCESTRAL SPECIES	23	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Great tit	MODERN SPECIES	15	LYPLA2 (ENSPMJG00000000692)	GALE (ENSPMJG00000000656) #7	HMGCL (ENSPMJG00000000643) #8	FUCA1 (ENSPMJG00000000634) #9	CNR2 (ENSPMJG00000000631) #10	PNRC2 (ENSPMJG00000000625) #11	SRSF10 (ENSPMJG00000000613) #12	ENSPMJG00000000603	MYOM3 (ENSPMJG00000000328) #13	ENSPMJG00000000312 #14	ENSPMJG00000000281 #15	GRHL3 (ENSPMJG00000000273) #16	NIPAL3 (ENSPMJG00000000257) #19	RCAN3 (ENSPMJG00000000249) #20	NCMAP (ENSPMJG00000000242) #21	SRRM1 (ENSPMJG00000000218) #22	CLIC4 (ENSPMJG00000000208) #23	RUNX3 (ENSPMJG00000000197) #24	ENSPMJG00000000184	SYF2 (ENSPMJG00000000170) #27	RSRP1 (ENSPMJG00000000148) #28	TMEM50A (ENSPMJG00000000129) #29	ENSPMJG00000000112 #30	MACO1 (ENSPMJG00000000097) #31	ENSPMJG00000000086 ##32	LDLRAP1 (ENSPMJG00000000050) #32	ID3 (ENSPMJG00000018446)	E2F2 (ENSPMJG00000018445)	ENSPMJG00000018444	TCEA3 (ENSPMJG00000018443)	OPRD1 (ENSPMJG00000018442)
Passeriformes_d	DUPLICATION
Passeriformes_d	ANCESTRAL SPECIES	23	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.s #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a	ENSGT00940000161960
Passeriformes_g	ANCESTRAL SPECIES	22	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.s #22	ENSGT00730000111080.b.t #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a
Passeroidea	ANCESTRAL SPECIES	22	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.s #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00950000183215.c.b #36	ENSGT01030000234597.a.a	ENSGT00390000005233.a	ENSGT00940000163960	ENSGT00940000156072
Zebra finch	MODERN SPECIES	16	LYPLA2 (ENSTGUG00000001198)	GALE (ENSTGUG00000023286) #7	HMGCL (ENSTGUG00000001195) #8	FUCA1 (ENSTGUG00000001190) #9	CNR2 (ENSTGUG00000001188) #10	PNRC2 (ENSTGUG00000029009) #11	SRSF10 (ENSTGUG00000024024) #12	GRHL3 (ENSTGUG00000001153) #16	ENSTGUG00000001176	MYOM3 (ENSTGUG00000001160) #13	IL22RA1 (ENSTGUG00000028852) #14	ENSTGUG00000001157 #15	NIPAL3 (ENSTGUG00000001149) #19	RCAN3 (ENSTGUG00000001146) #20	ENSTGUG00000022746 #21	ENSTGUG00000022132 #22	CLIC4 (ENSTGUG00000026827) #23	RUNX3 (ENSTGUG00000001130) #24	SYF2 (ENSTGUG00000001126) #27	RSRP1 (ENSTGUG00000001124) #28	TMEM50A (ENSTGUG00000001117) #29	ENSTGUG00000001107 #30	MACO1 (ENSTGUG00000001102) #31	LDLRAP1 (ENSTGUG00000001098) #32	MAN1C1 (ENSTGUG00000001087) #34	SELENON (ENSTGUG00000001083)	MTFR1L (ENSTGUG00000001075) #36	STMN1 (ENSTGUG00000017327)	ENSTGUG00000025337	SLC30A2 (ENSTGUG00000001069)	TRIM63 (ENSTGUG00000001060)
Common canary	MODERN SPECIES	65	PITHD1 (ENSSCAG00000006853)	LYPLA2 (ENSSCAG00000006857)	GALE (ENSSCAG00000006860) #7	HMGCL (ENSSCAG00000006869) #8	FUCA1 (ENSSCAG00000006878) #9	CNR2 (ENSSCAG00000006884) #10	PNRC2 (ENSSCAG00000006887) #11	SRSF10 (ENSSCAG00000006889) #12	ENSSCAG00000006894	IL22RA1 (ENSSCAG00000006905) #14	ENSSCAG00000006911 #15	GRHL3 (ENSSCAG00000006915) #16	NIPAL3 (ENSSCAG00000006921) #19	RCAN3 (ENSSCAG00000006926) #20	NCMAP (ENSSCAG00000006928) #21	ENSSCAG00000006931 #22	ENSSCAG00000006941 #22	CLIC4 (ENSSCAG00000006957) #23	RUNX3 (ENSSCAG00000006962) #24	SYF2 (ENSSCAG00000006965) #27	RSRP1 (ENSSCAG00000006970) #28	ENSSCAG00000006971	ENSSCAG00000006975 #30	MACO1 (ENSSCAG00000006983) #31	LDLRAP1 (ENSSCAG00000007039) #32	MAN1C1 (ENSSCAG00000007042) #34	ENSSCAG00000007047	MTFR1L (ENSSCAG00000007053) #36	STMN1 (ENSSCAG00000007058)	PAFAH2 (ENSSCAG00000007063)	ENSSCAG00000007069
Flycatcher	MODERN SPECIES	15	LYPLA2 (ENSFALG00000028382)	GALE (ENSFALG00000000514) #7	HMGCL (ENSFALG00000000512) #8	FUCA1 (ENSFALG00000000508) #9	CNR2 (ENSFALG00000014254) #10	SRSF10 (ENSFALG00000000505) #12	PNRC2 (ENSFALG00000024462) #11	ENSFALG00000000503	MYOM3 (ENSFALG00000000500) #13	IL22RA1 (ENSFALG00000000499) #14	ENSFALG00000000497 #15	GRHL3 (ENSFALG00000000490) #16	NIPAL3 (ENSFALG00000000487) #19	RCAN3 (ENSFALG00000000481) #20	ENSFALG00000027539 #21	ENSFALG00000027500 #22	CLIC4 (ENSFALG00000000472) #23	RUNX3 (ENSFALG00000000470) #24	SYF2 (ENSFALG00000024367) #27	ENSFALG00000000465 #28	TMEM50A (ENSFALG00000000455) #29	ENSFALG00000000454 #30	MACO1 (ENSFALG00000000444) #31	ENSFALG00000000419	ENSFALG00000025362 ##32	MAN1C1 (ENSFALG00000000434) #34	ENSFALG00000000425	MTFR1L (ENSFALG00000025744) #36	PAQR7 (ENSFALG00000000421)	PAFAH2 (ENSFALG00000000417)	ENSFALG00000000414
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00730000111080.b.t #22
Passeriformes_g	ANCESTRAL SPECIES	22	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b.s #22	ENSGT00730000111080.b.t #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a	ENSGT00940000161960
Passeroidea	ANCESTRAL SPECIES																	ENSGT00730000111080.b.t #22
Common canary	MODERN SPECIES	65	LYPLA2 (ENSSCAG00000006857)	GALE (ENSSCAG00000006860) #7	HMGCL (ENSSCAG00000006869) #8	FUCA1 (ENSSCAG00000006878) #9	CNR2 (ENSSCAG00000006884) #10	PNRC2 (ENSSCAG00000006887) #11	SRSF10 (ENSSCAG00000006889) #12	ENSSCAG00000006894	IL22RA1 (ENSSCAG00000006905) #14	ENSSCAG00000006911 #15	GRHL3 (ENSSCAG00000006915) #16	NIPAL3 (ENSSCAG00000006921) #19	RCAN3 (ENSSCAG00000006926) #20	NCMAP (ENSSCAG00000006928) #21	ENSSCAG00000006931 #22	ENSSCAG00000006941 #22	CLIC4 (ENSSCAG00000006957) #23	RUNX3 (ENSSCAG00000006962) #24	SYF2 (ENSSCAG00000006965) #27	RSRP1 (ENSSCAG00000006970) #28	ENSSCAG00000006971	ENSSCAG00000006975 #30	MACO1 (ENSSCAG00000006983) #31	LDLRAP1 (ENSSCAG00000007039) #32	MAN1C1 (ENSSCAG00000007042) #34	ENSSCAG00000007047	MTFR1L (ENSSCAG00000007053) #36	STMN1 (ENSSCAG00000007058)	PAFAH2 (ENSSCAG00000007063)	ENSSCAG00000007069	SLC30A2 (ENSSCAG00000007078)
Medium ground finch	MODERN SPECIES	139	LYPLA2 (ENSGFOG00000008108)	GALE (ENSGFOG00000008100) #7	HMGCL (ENSGFOG00000008076) #8	FUCA1 (ENSGFOG00000008062) #9	CNR2 (ENSGFOG00000008053) #10	ENSGFOG00000008050	PNRC2 (ENSGFOG00000008047) #11	SRSF10 (ENSGFOG00000008029) #12	ENSGFOG00000008022	MYOM3 (ENSGFOG00000007854) #13	ENSGFOG00000007826 #15	GRHL3 (ENSGFOG00000007814) #16	NIPAL3 (ENSGFOG00000007801) #19	RCAN3 (ENSGFOG00000007794) #20	NCMAP (ENSGFOG00000007786) #21	SRRM1 (ENSGFOG00000007771) #22	CLIC4 (ENSGFOG00000007758) #23	RUNX3 (ENSGFOG00000007751) #24	ENSGFOG00000007742 #24	SYF2 (ENSGFOG00000007737) #27	TMEM50A (ENSGFOG00000007733) #29	ENSGFOG00000007723 #30	MACO1 (ENSGFOG00000007710) #31	LDLRAP1 (ENSGFOG00000007702) #32	MAN1C1 (ENSGFOG00000007691) #34	SELENON (ENSGFOG00000007663) #35	MTFR1L (ENSGFOG00000007652) #36	PAQR7 (ENSGFOG00000007647)	STMN1 (ENSGFOG00000007634)	PAFAH2 (ENSGFOG00000007625)	EXTL1 (ENSGFOG00000007438)
Galloanserae	ANCESTRAL SPECIES	25	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00950000183215.c.b #36
Anatidae	ANCESTRAL SPECIES	21	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00960000188019	ENSGT00950000183215.c.b #36
Duck	MODERN SPECIES	15	TRIT1 (ENSAPLG00000011421)	MYCL (ENSAPLG00000016475)	ENSAPLG00000026452	PPT1 (ENSAPLG00000012514)	PNRC2 (ENSAPLG00000000996) #11	SRSF10 (ENSAPLG00000005446) #12	ENSAPLG00000005402	MYOM3 (ENSAPLG00000003784) #13	IL22RA1 (ENSAPLG00000003661) #14	ENSAPLG00000003557 #15	GRHL3 (ENSAPLG00000003161) #16	STPG1 (ENSAPLG00000003159) #18	NIPAL3 (ENSAPLG00000002628) #19	RCAN3 (ENSAPLG00000002545) #20	NCMAP (ENSAPLG00000002541) #21	SRRM1 (ENSAPLG00000002066) #22	CLIC4 (ENSAPLG00000019742) #23	RUNX3 (ENSAPLG00000016439) #24	SYF2 (ENSAPLG00000016435) #27	RSRP1 (ENSAPLG00000023561) #28	TMEM50A (ENSAPLG00000016434) #29	ENSAPLG00000016375 #30	MACO1 (ENSAPLG00000016308) #31	LDLRAP1 (ENSAPLG00000016262) #32	MAN1C1 (ENSAPLG00000016115) #34	ENSAPLG00000025313	MTFR1L (ENSAPLG00000016018) #36
Pink-footed goose	MODERN SPECIES	73	GALE (ENSABRG00000012490) #7	HMGCL (ENSABRG00000012489) #8	FUCA1 (ENSABRG00000012475) #9	ENSABRG00000012456	PNRC2 (ENSABRG00000012454) #11	SRSF10 (ENSABRG00000012445) #12	ENSABRG00000012434	MYOM3 (ENSABRG00000012402) #13	IL22RA1 (ENSABRG00000012385) #14	ENSABRG00000012376 #15	GRHL3 (ENSABRG00000012359) #16	STPG1 (ENSABRG00000012299) #18	NIPAL3 (ENSABRG00000012225) #19	RCAN3 (ENSABRG00000012217) #20	NCMAP (ENSABRG00000012194) #21	SRRM1 (ENSABRG00000012156) #22	CLIC4 (ENSABRG00000012147) #23	RUNX3 (ENSABRG00000012142) #24	SYF2 (ENSABRG00000012134) #27	RSRP1 (ENSABRG00000012129) #28	TMEM50A (ENSABRG00000012117) #29	ENSABRG00000012095 #30	MACO1 (ENSABRG00000012082) #31	LDLRAP1 (ENSABRG00000012068) #32	ENSABRG00000012066	MAN1C1 (ENSABRG00000012053) #34	ENSABRG00000012040	ENSABRG00000012037	MTFR1L (ENSABRG00000012032) #36
Phasianidae	ANCESTRAL SPECIES	24	ENSGT00940000163960	ENSGT00940000156072	ENSGT00940000156529	ENSGT00940000158412.e	ENSGT00950000183056.A.a	ENSGT00530000067301	ENSGT00940000157151	ENSGT00940000156592	ENSGT00940000156213	ENSGT00940000158264.b	ENSGT00530000063698.b	ENSGT00940000157833	ENSGT00940000155019.a.a	ENSGT00940000156139.ab	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00950000183215.c.b #36	ENSGT00940000164873	ENSGT00390000002144	ENSGT00410000025596.a.b	ENSGT00940000156761
Phasianidae_b	ANCESTRAL SPECIES	23	ENSGT00940000163960	ENSGT00940000156072	ENSGT00940000156529	ENSGT00940000158412.e	ENSGT00950000183056.A.a	ENSGT00530000067301	ENSGT00940000157151	ENSGT00940000156592	ENSGT00940000156213	ENSGT00940000158264.b	ENSGT00530000063698.b	ENSGT00940000157833	ENSGT00940000155019.a.a	ENSGT00940000156139.ab	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00950000183215.c.b #36	ENSGT00940000164873	ENSGT00390000002144	ENSGT00410000025596.a.b	ENSGT00940000156761
Chicken	MODERN SPECIES	15	ENSGALG00010013463	SLC30A2 (ENSGALG00010016436)	TRIM63 (ENSGALG00010016425)	PDIK1L (ENSGALG00010016394)	FAM110D (ENSGALG00010016383)	C1orf232 (ENSGALG00010016353)	PTPRU (ENSGALG00010016338)	MECR (ENSGALG00010016312)	SRSF4 (ENSGALG00010016299)	L3MBTL4 (ENSGALG00010016257)	TMEM200B (ENSGALG00010016221)	EPB41 (ENSGALG00010016111)	ENSGALG00010015979	TRNAU1AP (ENSGALG00010015959)	ENSGALG00010015937 #21	SRRM1 (ENSGALG00010015914) #22	CLIC4 (ENSGALG00010015874) #23	RUNX3 (ENSGALG00010015825) #24	SYF2 (ENSGALG00010015803) #27	RSRP1 (ENSGALG00010015793) #28	TMEM50A (ENSGALG00010015769) #29	RHCE (ENSGALG00010015729) #30	TMEM57 (ENSGALG00010015645) #31	LDLRAP1 (ENSGALG00010015605) #32	MAN1C1 (ENSGALG00010015573) #34	SELENON (ENSGALG00010015516)	MTFR1L (ENSGALG00010015486) #36	ENSGALG00010015440	TAF12 (ENSGALG00010015384)	GMEB1 (ENSGALG00010015314)	ENSGALG00010015248
Japanese quail	MODERN SPECIES	15	PAFAH2 (ENSCJPG00005016352)	ENSCJPG00005016351	SLC30A2 (ENSCJPG00005016350)	TRIM63 (ENSCJPG00005016349)	PDIK1L (ENSCJPG00005016348)	FAM110D (ENSCJPG00005016347)	C1orf232 (ENSCJPG00005016346)	PTPRU (ENSCJPG00005016343)	MECR (ENSCJPG00005016342)	SRSF4 (ENSCJPG00005016341)	ENSCJPG00005016340	ENSCJPG00005016339	EPB41 (ENSCJPG00005016336)	ENSCJPG00005016335	TRNAU1AP (ENSCJPG00005016311)	SRRM1 (ENSCJPG00005016306) #22	CLIC4 (ENSCJPG00005016305) #23	RUNX3 (ENSCJPG00005016304) #24	SYF2 (ENSCJPG00005016303) #27	RSRP1 (ENSCJPG00005016302) #28	TMEM50A (ENSCJPG00005016301) #29	ENSCJPG00005016300 #30	MACO1 (ENSCJPG00005016299) #31	LDLRAP1 (ENSCJPG00005016298) #32	MAN1C1 (ENSCJPG00005016273) #34	ENSCJPG00005016272	MTFR1L (ENSCJPG00005016271) #36	ENSCJPG00005016270	TAF12 (ENSCJPG00005016269)	ENSCJPG00005016267	GMEB1 (ENSCJPG00005016263)
Cryptodira	ANCESTRAL SPECIES	31	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00960000189517	ENSGT00940000161438	ENSGT01030000234597.a.a
Chinese turtle	MODERN SPECIES	1632	PITHD1 (ENSPSIG00000007175)	LYPLA2 (ENSPSIG00000007169)	GALE (ENSPSIG00000006332) #7	HMGCL (ENSPSIG00000005841) #8	FUCA1 (ENSPSIG00000005501) #9	CNR2 (ENSPSIG00000016382) #10	PNRC2 (ENSPSIG00000016378) #11	SRSF10 (ENSPSIG00000017849) #12	MYOM3 (ENSPSIG00000016760) #13	ENSPSIG00000016681 #14	GRHL3 (ENSPSIG00000016215) #16	STPG1 (ENSPSIG00000015698) #18	NIPAL3 (ENSPSIG00000014623) #19	RCAN3 (ENSPSIG00000014145) #20	NCMAP (ENSPSIG00000013286) #21	SRRM1 (ENSPSIG00000013119) #22	CLIC4 (ENSPSIG00000012773) #23	RUNX3 (ENSPSIG00000012728) #24	SYF2 (ENSPSIG00000011816) #27	RSRP1 (ENSPSIG00000011651) #28	TMEM50A (ENSPSIG00000011622) #29	ENSPSIG00000010142 #30	MACO1 (ENSPSIG00000008816) #31
Testudinoidea	ANCESTRAL SPECIES	27	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978.g #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00960000189517	ENSGT00940000161438	ENSGT01030000234597.a.a
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00510000048978.g #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00960000189517	ENSGT00940000161438	ENSGT01030000234597.a.a
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	1418	ENSCABG00000002007	GALE (ENSCABG00000001983) #7	HMGCL (ENSCABG00000001979) #8	FUCA1 (ENSCABG00000001978) #9	CNR2 (ENSCABG00000001976) #10	PNRC2 (ENSCABG00000001975) #11	SRSF10 (ENSCABG00000001973) #12	ENSCABG00000001971	MYOM3 (ENSCABG00000001932) #13	IFNLR1 (ENSCABG00000001927) #15	GRHL3 (ENSCABG00000001913) #16	STPG1 (ENSCABG00000001909) #18	NIPAL3 (ENSCABG00000001906) #19	RCAN3 (ENSCABG00000001902) #20	NCMAP (ENSCABG00000001900) #21	ENSCABG00000001897 #22	ENSCABG00000001896 #22	CLIC4 (ENSCABG00000001892) #23	RUNX3 (ENSCABG00000001883) #24	ENSCABG00000001878	SYF2 (ENSCABG00000001874) #27	RSRP1 (ENSCABG00000001871) #28	TMEM50A (ENSCABG00000001867) #29	ENSCABG00000001863 #30	MACO1 (ENSCABG00000001746) #31	LDLRAP1 (ENSCABG00000001742) #32	MAN1C1 (ENSCABG00000001741) #34	MON1A (ENSCABG00000001739)	ENSCABG00000001731
Abingdon island giant tortoise	MODERN SPECIES	1418	GALE (ENSCABG00000001983) #7	HMGCL (ENSCABG00000001979) #8	FUCA1 (ENSCABG00000001978) #9	CNR2 (ENSCABG00000001976) #10	PNRC2 (ENSCABG00000001975) #11	SRSF10 (ENSCABG00000001973) #12	ENSCABG00000001971	MYOM3 (ENSCABG00000001932) #13	IFNLR1 (ENSCABG00000001927) #15	GRHL3 (ENSCABG00000001913) #16	STPG1 (ENSCABG00000001909) #18	NIPAL3 (ENSCABG00000001906) #19	RCAN3 (ENSCABG00000001902) #20	NCMAP (ENSCABG00000001900) #21	ENSCABG00000001897 #22	ENSCABG00000001896 #22	CLIC4 (ENSCABG00000001892) #23	RUNX3 (ENSCABG00000001883) #24	ENSCABG00000001878	SYF2 (ENSCABG00000001874) #27	RSRP1 (ENSCABG00000001871) #28	TMEM50A (ENSCABG00000001867) #29	ENSCABG00000001863 #30	MACO1 (ENSCABG00000001746) #31	LDLRAP1 (ENSCABG00000001742) #32	MAN1C1 (ENSCABG00000001741) #34	MON1A (ENSCABG00000001739)	ENSCABG00000001731
Goode s thornscrub tortoise	MODERN SPECIES	12	GALE (ENSGEVG00005021156) #7	HMGCL (ENSGEVG00005021158) #8	FUCA1 (ENSGEVG00005021161) #9	CNR2 (ENSGEVG00005021162) #10	ENSGEVG00005021164	PNRC2 (ENSGEVG00005021165) #11	SRSF10 (ENSGEVG00005021166) #12	ENSGEVG00005021169	MYOM3 (ENSGEVG00005021171) #13	ENSGEVG00005021174 #15	GRHL3 (ENSGEVG00005021175) #16	STPG1 (ENSGEVG00005021179) #18	NIPAL3 (ENSGEVG00005021180) #19	RCAN3 (ENSGEVG00005021183) #20	ENSGEVG00005021184	SRRM1 (ENSGEVG00005021189) #22	CLIC4 (ENSGEVG00005021192) #23	RUNX3 (ENSGEVG00005021193) #24	SYF2 (ENSGEVG00005021196) #27	RSRP1 (ENSGEVG00005021197) #28	TMEM50A (ENSGEVG00005021200) #29	ENSGEVG00005021204 #30	MACO1 (ENSGEVG00005021206) #31	LDLRAP1 (ENSGEVG00005021210) #32	MAN1C1 (ENSGEVG00005021213) #34	ENSGEVG00005021214	MTFR1L (ENSGEVG00005021216) #36	ENSGEVG00005021217	PAQR7 (ENSGEVG00005021219)	STMN1 (ENSGEVG00005021220)	PAFAH2 (ENSGEVG00005021222)
Emydidae	ANCESTRAL SPECIES	39	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT01030000235992	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000164147	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978.g #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.l #24	ENSGT00390000017845 #27	ENSGT00730000111390 #28	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312 #34	ENSGT00940000164027	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00960000189517	ENSGT00940000161438	ENSGT01030000234597.a.a
painted turtle	MODERN SPECIES	757	LYPLA2 (ENSCPBG00000000554)	GALE (ENSCPBG00000000537) #7	HMGCL (ENSCPBG00000000518) #8	FUCA1 (ENSCPBG00000000504) #9	CNR2 (ENSCPBG00000000494) #10	PNRC2 (ENSCPBG00000000483) #11	SRSF10 (ENSCPBG00000000469) #12	ENSCPBG00000000419	MYOM3 (ENSCPBG00000000170) #13	IFNLR1 (ENSCPBG00000000138) #15	GRHL3 (ENSCPBG00000025098) #16	STPG1 (ENSCPBG00000025093) #18	NIPAL3 (ENSCPBG00000025090) #19	RCAN3 (ENSCPBG00000025089) #20	NCMAP (ENSCPBG00000025086) #21	SRRM1 (ENSCPBG00000025083) #22	CLIC4 (ENSCPBG00000025078) #23	RUNX3 (ENSCPBG00000025074) #24	SYF2 (ENSCPBG00000025073) #27	RSRP1 (ENSCPBG00000025072) #28	TMEM50A (ENSCPBG00000025071) #29	ENSCPBG00000025069 #30	MACO1 (ENSCPBG00000025064) #31	LDLRAP1 (ENSCPBG00000025060) #32	MAN1C1 (ENSCPBG00000025055) #34	MTFR1L (ENSCPBG00000025052) #36	ENSCPBG00000025050	STMN1 (ENSCPBG00000025048)	PAFAH2 (ENSCPBG00000025044)	ENSCPBG00000025041	SLC30A2 (ENSCPBG00000025040)
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	2861																ENSTMTG00000011978 #22	ENSTMTG00000011994
Three-toed box turtle	MODERN SPECIES	2830																ENSTMTG00000010136 #22	ENSTMTG00000010148
Anura	ANCESTRAL SPECIES	37	ENSGT01090000260070.B.c.a	ENSGT00390000009435	ENSGT00390000002053	ENSGT00390000004660.C.a.b	ENSGT00940000157193	ENSGT00950000182852.A.b	ENSGT00950000183215.c.b #36	ENSGT00950000183034.B	ENSGT00940000159312 #34	ENSGT00940000157118.c.a #32	ENSGT00390000016613.c #31	ENSGT00950000182844.a.b #30	ENSGT00940000157715 #29	ENSGT00940000165706	ENSGT00940000156598 #24	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000159501 #20	ENSGT00940000158233 #19	ENSGT00390000011598 #18	ENSGT00940000157970 #16	ENSGT00940000161507	ENSGT00510000048978 #15	ENSGT00940000161366 #14	ENSGT00940000158669 #13	ENSGT00940000164147	ENSGT00940000154450 #12	ENSGT00530000063881.a.b #11	ENSGT01060000248564.a.b #10	ENSGT00940000158787	ENSGT00940000159442
Frog	MODERN SPECIES	2	smim12 (ENSXETG00000041748)	zmpste24 (ENSXETG00000026791)	tmem30b (ENSXETG00000026793)	kdm1a (ENSXETG00000003698)	ENSXETG00000003696	mtfr1l (ENSXETG00000003694) #36	rlf (ENSXETG00000026794)	man1c1 (ENSXETG00000003692) #34	ldlrap1 (ENSXETG00000003693) #32	maco1 (ENSXETG00000003691) #31	rhd (ENSXETG00000003690) #30	tmem50a (ENSXETG00000026802) #29	XB5796436 [provisional:mgst3] (ENSXETG00000003689)	runx3 (ENSXETG00000001029) #24	ENSXETG00000047206	srrm1 (ENSXETG00000036685) #22	clic4 (ENSXETG00000039322) #23	ENSXETG00000046471	ENSXETG00000038470	ENSXETG00000048354	rcan3 (ENSXETG00000039608) #20	rnf19b (ENSXETG00000031122)	tmem54 (ENSXETG00000001004)	hpca (ENSXETG00000001001)	s100pbp (ENSXETG00000033797)	yars1 (ENSXETG00000027865)	kiaa1522 (ENSXETG00000046581)	sync (ENSXETG00000036532)	rbbp4 (ENSXETG00000000984)	zbtb8os (ENSXETG00000000982)	zbtb8a.1 (ENSXETG00000033102)
Leishan spiny toad	MODERN SPECIES	5	LUZP1 (ENSLLEG00000007649)	MTFR1L (ENSLLEG00000007673) #36	ENSLLEG00000007699	RLF (ENSLLEG00000007731)	ENSLLEG00000007788	MAN1C1 (ENSLLEG00000007810) #34	ENSLLEG00000007853	ENSLLEG00000007862	LDLRAP1 (ENSLLEG00000007884) #32	MACO1 (ENSLLEG00000008000) #31	ENSLLEG00000008381 #30	TMEM50A (ENSLLEG00000008458) #29	ENSLLEG00000008560	RUNX3 (ENSLLEG00000008651) #24	ENSLLEG00000008788	SRRM1 (ENSLLEG00000008863) #22	ENSLLEG00000009812 #23	ENSLLEG00000010034	ENSLLEG00000010051	RCAN3 (ENSLLEG00000010077) #20	NIPAL3 (ENSLLEG00000010169) #19	STPG1 (ENSLLEG00000010497) #18	GRHL3 (ENSLLEG00000010682) #16	ENSLLEG00000011002	ENSLLEG00000011037	ENSLLEG00000011198	ENSLLEG00000011344 #14	MYOM3 (ENSLLEG00000011474) #13	ENSLLEG00000012345	ENSLLEG00000012386	SRSF10 (ENSLLEG00000012496) #12
Coelacanth	MODERN SPECIES	253	GJA9 (ENSLACG00000009298)	RHBDL2 (ENSLACG00000009493)	AKIRIN1 (ENSLACG00000009809)	FUCA1 (ENSLACG00000010105) #9	HMGCL (ENSLACG00000010365) #8	RPL11 (ENSLACG00000010502)	ENSLACG00000010634	ENSLACG00000010829	PITHD1 (ENSLACG00000011199)	LYPLA2 (ENSLACG00000011352)	GALE (ENSLACG00000011700) #7	ldlrap1a (ENSLACG00000011820) ##32	SYF2 (ENSLACG00000012064) #27	RUNX3 (ENSLACG00000013776) #24	CLIC4 (ENSLACG00000014571) #23	SRRM1 (ENSLACG00000014793) #22	NIPAL3 (ENSLACG00000015133) #19	RCAN3 (ENSLACG00000015282) #20	STPG1 (ENSLACG00000015367) #18	GRHL3 (ENSLACG00000015480) #16	MYOM3 (ENSLACG00000015914) #13	fabp10a (ENSLACG00000016052)	SRSF10 (ENSLACG00000016124) #12	PNRC2 (ENSLACG00000016183) #11	CNR2 (ENSLACG00000016362) #10	ENSLACG00000016913	RSPO1 (ENSLACG00000016932)	GNL2 (ENSLACG00000016998)	DNALI1 (ENSLACG00000017104)	SNIP1 (ENSLACG00000017146)	MEAF6 (ENSLACG00000017165)
Actinopterygii	ANCESTRAL SPECIES	278												ENSGT00390000011598 #18	ENSGT00940000157970 #16	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000157118.c.b ##32	ENSGT00390000004923.A
Reedfish	MODERN SPECIES	5	cnr2 (ENSECRG00000016390) #10	ENSECRG00000016343	ENSECRG00000016299	marcksl1a (ENSECRG00000016275)	hdac1 (ENSECRG00000016007)	bsdc1 (ENSECRG00000015930)	olig4 (ENSECRG00000015914)	ENSECRG00000015856	fndc5b (ENSECRG00000015820)	ENSECRG00000015770 #18	ENSECRG00000015726 #16	ENSECRG00000015687	ENSECRG00000015656	nipal3 (ENSECRG00000015606) #19	rcan3 (ENSECRG00000015565) #20	SRRM1 (ENSECRG00000015509) #22	clic4 (ENSECRG00000015435) #23	runx3 (ENSECRG00000015396) #24	syf2 (ENSECRG00000015362) #27	ENSECRG00000015299	mgst3b (ENSECRG00000015269)	tmem50a (ENSECRG00000015237) #29	rhd (ENSECRG00000015196) #30	maco1b (ENSECRG00000015122) #31	ldlrap1a (ENSECRG00000014859) ##32	ENSECRG00000014752	ENSECRG00000014718	ENSECRG00000014692	ENSECRG00000013636	ENSECRG00000013613	ENSECRG00000013593
Neopterygii	ANCESTRAL SPECIES	48												ENSGT00390000007091	ENSGT00940000157970 #16	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00390000004923.A	ENSGT00940000166262	ENSGT00390000009361	ENSGT00940000165880	ENSGT00940000154301	ENSGT00940000159864	ENSGT00940000159693
Osteoglossocephalai	ANCESTRAL SPECIES	93	ENSGT00940000165937	ENSGT00940000163885	ENSGT00530000063353.a.a	ENSGT01100000263839	ENSGT00940000156761	ENSGT00940000167209	ENSGT00940000160504	ENSGT00940000155115.a.b	ENSGT00940000165326	ENSGT00390000017418	ENSGT00940000159314	ENSGT00940000159599	ENSGT00940000157970 #16	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT01060000248724	ENSGT00390000004923.A.c.b	ENSGT00940000166262	ENSGT00390000009361	ENSGT00730000111349	ENSGT01030000234896	ENSGT00940000159864
Clupeocephala	ANCESTRAL SPECIES	231					ENSGT00940000177851	ENSGT00940000158790	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00940000165733	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00990000210926	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT01060000248724	ENSGT00390000004923.A.c.b	ENSGT00940000166262	ENSGT00390000009361	ENSGT00940000165880.b
Otomorpha	ANCESTRAL SPECIES																	ENSGT00730000111080.b #22
Otophysi	ANCESTRAL SPECIES	96	ENSGT00940000153592.A.b	ENSGT01030000235292	ENSGT00390000005606	ENSGT00940000157913.b.a	ENSGT01010000222313.A.a	ENSGT00940000153798.A.a	ENSGT00940000161983.a	ENSGT00940000158790	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000165733	ENSGT00940000155017 #23	ENSGT00940000155695.i.b.b	ENSGT00880000138028.b.b	ENSGT00550000074866	ENSGT00550000074910	ENSGT00390000005794	ENSGT00940000154644.jb.b.g	ENSGT00940000155793.a.b	ENSGT00530000063629.a	ENSGT00940000158550	ENSGT00940000161321	ENSGT00940000154922.b.u.b.b	ENSGT00940000154922.b.u.b.a	ENSGT00940000154922.b.v.a
Characiphysae	ANCESTRAL SPECIES	54	ENSGT00940000153592.A.b	ENSGT01030000235292	ENSGT00390000005606	ENSGT00940000157913.b.a	ENSGT01010000222313.A.a	ENSGT00940000153798.A.a	ENSGT00940000161983.a	ENSGT00940000158790.hb	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000165733	ENSGT00940000155017 #23	ENSGT00940000155695.i.b.b	ENSGT00880000138028.b.b	ENSGT00550000074866	ENSGT00550000074910	ENSGT00390000005794	ENSGT00940000154644.jb.b.g.a	ENSGT00940000155793.a.b	ENSGT00530000063629.a	ENSGT00940000158550	ENSGT00940000161321	ENSGT00940000154922.b.u.b.b	ENSGT00940000154922.b.u.b.a	ENSGT00940000154922.b.v.a
Characiphysae_b	ANCESTRAL SPECIES	53	ENSGT00940000153592.A.b	ENSGT01030000235292	ENSGT00390000005606	ENSGT00940000157913.b.a	ENSGT01010000222313.A.a	ENSGT00940000153798.A.a	ENSGT00940000161983.a	ENSGT00940000158790.hb	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000165733	ENSGT00940000155017 #23	ENSGT00940000155695.i.b.b	ENSGT00880000138028.b.b	ENSGT00550000074866	ENSGT00550000074910	ENSGT00390000005794	ENSGT00940000154644.jb.b.g.a	ENSGT00940000155793.a.b	ENSGT00530000063629.a	ENSGT00940000158550	ENSGT00940000161321	ENSGT00940000154922.b.u.b.b	ENSGT00940000154922.b.u.b.a	ENSGT00940000154922.b.v.a
Characoidei	ANCESTRAL SPECIES	63	ENSGT00940000153592.A.b	ENSGT01030000235292	ENSGT00390000005606	ENSGT00940000157913.b.a	ENSGT01010000222313.A.a	ENSGT00940000153798.A.a	ENSGT00940000161983.a	ENSGT00940000158790.hb	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000165733	ENSGT00940000155017 #23	ENSGT00940000155695.i.b.b	ENSGT00880000138028.b.b	ENSGT00550000074866	ENSGT00550000074910	ENSGT00390000005794	ENSGT00940000154644.jb.b.g.a	ENSGT00940000155793.a.b	ENSGT00530000063629.a	ENSGT00940000158550	ENSGT00940000161321	ENSGT00940000154922.b.u.b.b	ENSGT00940000154922.b.u.b.a	ENSGT00940000154922.b.v.a
Mexicana tetra	MODERN SPECIES	24	ENSAMXG00000018667	ENSAMXG00000035278	ENSAMXG00000018687	DLGAP2 (ENSAMXG00000018702)	cln8 (ENSAMXG00000035104)	ARHGEF10 (ENSAMXG00000018737)	KBTBD11 (ENSAMXG00000026121)	ppie (ENSAMXG00000018767)	pabpc4 (ENSAMXG00000018779)	zpcx (ENSAMXG00000041244)	tmem54a (ENSAMXG00000018780)	lck (ENSAMXG00000018790)	FAM167B (ENSAMXG00000040937)	zgc:154055 (ENSAMXG00000018834)	tdh2 (ENSAMXG00000030423)	ENSAMXG00000040320 #22	clic4 (ENSAMXG00000031688) #23	ENSAMXG00000039296	rtn4ip1 (ENSAMXG00000018893)	qrsl1 (ENSAMXG00000018896)	iars2 (ENSAMXG00000018899)	rab3gap2 (ENSAMXG00000018920)	ppp1cb (ENSAMXG00000030063)	ENSAMXG00000037680	kcnh1a (ENSAMXG00000002523)	hhat (ENSAMXG00000002509)	acss1 (ENSAMXG00000002359)	ENSAMXG00000036695	ENSAMXG00000035607	ENSAMXG00000002253	slc22a7b.1 (ENSAMXG00000002230)
Red-bellied piranha	MODERN SPECIES	133	ENSPNAG00000023927	DLGAP2 (ENSPNAG00000003805)	cln8 (ENSPNAG00000024021)	ARHGEF10 (ENSPNAG00000024272)	KBTBD11 (ENSPNAG00000024287)	ppie (ENSPNAG00000007122)	pabpc4 (ENSPNAG00000024355)	zpcx (ENSPNAG00000024383)	tmem54a (ENSPNAG00000024405)	lck (ENSPNAG00000024446)	FAM167B (ENSPNAG00000024459)	ENSPNAG00000024715	ENSPNAG00000024739	zgc:154055 (ENSPNAG00000024758)	tdh2 (ENSPNAG00000024809)	ENSPNAG00000005888 #22	srrm1 (ENSPNAG00000024898)	clic4 (ENSPNAG00000024929) #23	ENSPNAG00000006194	rtn4ip1 (ENSPNAG00000005299)	qrsl1 (ENSPNAG00000025385)	iars2 (ENSPNAG00000025742)	rab3gap2 (ENSPNAG00000004927)	ppp1cb (ENSPNAG00000027158)	kcnh1a (ENSPNAG00000027206)
Clupeiformes	ANCESTRAL SPECIES	162	ENSGT00940000153592.A.b	ENSGT01030000235292	ENSGT00390000005606	ENSGT00940000157913.b.a	ENSGT01010000222313.A.a	ENSGT00940000153798.A.a	ENSGT00940000161983.a	ENSGT00940000158790	ENSGT00940000154788	ENSGT00390000004700.a.g	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00940000165733	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00530000063876.a	ENSGT00940000159420	ENSGT00390000000709	ENSGT00940000158993	ENSGT00390000017767.b.a	ENSGT00940000165081.b	ENSGT00940000160181.j	ENSGT00940000158683.a.a.a.b	ENSGT00940000157684	ENSGT00390000004803	ENSGT00950000183032.B.b.b	ENSGT00940000165711	ENSGT00940000159155	ENSGT00940000155019.a.b
Atlantic herring	MODERN SPECIES	5	ENSCHAG00000022488	zgc:193593 (ENSCHAG00000022483)	ENSCHAG00000022461	DLGAP2 (ENSCHAG00000022423)	cln8 (ENSCHAG00000022421)	ARHGEF10 (ENSCHAG00000021784)	KBTBD11 (ENSCHAG00000021764)	ENSCHAG00000021746	ppie (ENSCHAG00000021720)	pabpc4 (ENSCHAG00000021463)	tmem54a (ENSCHAG00000021451)	lck (ENSCHAG00000020866)	FAM167B (ENSCHAG00000020848)	zgc:154055 (ENSCHAG00000020690)	tdh2 (ENSCHAG00000020648)	ENSCHAG00000020636 #22	clic4 (ENSCHAG00000020540) #23	ENSCHAG00000020532	SERTAD4 (ENSCHAG00000020525)	SYT14 (ENSCHAG00000020513)	utp25 (ENSCHAG00000020321)	osr1 (ENSCHAG00000020308)	nt5c1ba (ENSCHAG00000020198)	ENSCHAG00000020189	ENSCHAG00000020183	nt5c1ba (ENSCHAG00000020134)	rdh14a (ENSCHAG00000020116)	kcns3a (ENSCHAG00000020115)	wdr35 (ENSCHAG00000019703)	matn3b (ENSCHAG00000019678)	mtres1 (ENSCHAG00000019672)
Euteleosteomorpha	ANCESTRAL SPECIES	34	ENSGT00940000158484 #8	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01020000230683	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000158790	ENSGT00940000177851	ENSGT00940000165717	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000165733	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00990000210926	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT01060000248724	ENSGT00390000004923.A.c.b	ENSGT00940000166262	ENSGT00390000009361
Acanthomorphata	ANCESTRAL SPECIES	7	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01020000230683	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000177142	ENSGT00940000158790	ENSGT00940000177851	ENSGT00940000165717	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000165733	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981	ENSGT00390000004923.A.c.b	ENSGT00940000166262	ENSGT00390000009361	ENSGT00940000165880.b
Euacanthomorphacea	ANCESTRAL SPECIES	27	ENSGT00940000158484 #8	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01020000230683	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000177142	ENSGT00940000158790	ENSGT00940000177851	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000165733	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981	ENSGT00390000004923.A.c.b	ENSGT00940000166262	ENSGT00390000009361	ENSGT00940000165880.b
Percomorphaceae	ANCESTRAL SPECIES	26	ENSGT00940000158484 #8	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01020000230683	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000177142	ENSGT00940000158790	ENSGT00940000177851	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000165733	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981	ENSGT00390000004923.A.c.b	ENSGT00940000166262	ENSGT00390000009361	ENSGT00940000165880.b
Percomorphaceae_B	ANCESTRAL SPECIES	11	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01020000230683	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000177142	ENSGT00940000158790	ENSGT00940000177851	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00960000187061	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000165733	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981	ENSGT00390000004923.A.c.b	ENSGT00940000166262	ENSGT00390000009361	ENSGT00940000165880.b
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00730000111080.b #22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00730000111080.b #22
Carangaria	ANCESTRAL SPECIES																	ENSGT00730000111080.b #22
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00730000111080.b #22
Seriola	ANCESTRAL SPECIES																	ENSGT00730000111080.b #22
Yellowtail amberjack	MODERN SPECIES	174																ENSSLDG00000003901 #22
Ovalentaria	ANCESTRAL SPECIES	10	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01020000230683	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000177142	ENSGT00940000158790	ENSGT00940000177851	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00960000187061	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000165733	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981	ENSGT00390000004923.A.c.b	ENSGT00940000166262	ENSGT00390000009361	ENSGT00940000165880.b
Ovalentaria_B	ANCESTRAL SPECIES	18	ENSGT00940000158484 #8	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01020000230683	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000177142	ENSGT00940000158790	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00960000187061	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000165733	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981	ENSGT00390000004923.A.c.b	ENSGT00940000166262	ENSGT00390000009361	ENSGT00940000165880.b
Cichlidae	ANCESTRAL SPECIES	23	ENSGT00940000157491	ENSGT00940000158484 #8	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000177142	ENSGT00940000158790	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00960000187061	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000165733	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981	ENSGT00390000004923.A.c.b	ENSGT00940000166262	ENSGT00390000009361	ENSGT00940000165880.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT00940000157491	ENSGT00940000158484 #8	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000177142	ENSGT00940000158790	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00960000187061	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000165733	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981.b	ENSGT00730000113981.a	ENSGT00390000004923.A.c.b	ENSGT00940000158686	ENSGT00940000166262
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT00940000157491	ENSGT00940000158484 #8	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000177142	ENSGT00940000158790	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00960000187061	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000165733	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981.b	ENSGT00730000113981.a	ENSGT00390000004923.A.c.b	ENSGT00940000158686	ENSGT00940000166262
Haplochromini	ANCESTRAL SPECIES	7	ENSGT00940000157491	ENSGT00940000158484 #8	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000177142	ENSGT00940000158790	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00960000187061	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000165733	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715.f #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981.b	ENSGT00730000113981.a	ENSGT00390000004923.A.c.b	ENSGT00940000158686	ENSGT00940000166262
Haplochromini_A	ANCESTRAL SPECIES	7	ENSGT00940000157491	ENSGT00940000158484 #8	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000177142	ENSGT00940000158790	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00960000187061	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715.f #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981.b	ENSGT00730000113981.a	ENSGT00390000004923.A.c.b	ENSGT00940000158686	ENSGT00940000166262	ENSGT00390000009361
P. nyererei	MODERN SPECIES	383	zbtb8a (ENSPNYG00000006845)	gjb3 (ENSPNYG00000006836)	hmgcl (ENSPNYG00000006821) #8	gjb10 (ENSPNYG00000006809)	ENSPNYG00000006795	ppie (ENSPNYG00000006336)	pabpc4 (ENSPNYG00000006134)	ENSPNYG00000006108	tmem54a (ENSPNYG00000006098)	hdac1 (ENSPNYG00000006049)	ENSPNYG00000006021	lck (ENSPNYG00000005252)	FAM167B (ENSPNYG00000005162)	zgc:154055 (ENSPNYG00000005136)	tdh2 (ENSPNYG00000005096)	ENSPNYG00000005058 #22	clic4 (ENSPNYG00000005035) #23	runx3 (ENSPNYG00000005007) #24	syf2 (ENSPNYG00000004979) #27	rsrp1 (ENSPNYG00000004959)	mgst3b (ENSPNYG00000004945)	TMEM50A (ENSPNYG00000004626) #29	rhd (ENSPNYG00000004554) #30	maco1b (ENSPNYG00000004542) #31	ldlrap1b (ENSPNYG00000004529) #32	FNDC5 (ENSPNYG00000004490)	olig4 (ENSPNYG00000004472)	bsdc1 (ENSPNYG00000004433)	marcksl1a (ENSPNYG00000004425)	gjb9a (ENSPNYG00000004418)	ptp4a2a (ENSPNYG00000004403)
Haplochromini_B	ANCESTRAL SPECIES	37	ENSGT00940000158000 #7	ENSGT00940000157491	ENSGT00940000158484 #8	ENSGT01030000234513.A.a.a.a.a.e	ENSGT00940000177142	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000158790	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715.f #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981.b	ENSGT00730000113981.a	ENSGT00390000004923.A.c.b	ENSGT00940000158686	ENSGT00940000166262	ENSGT00390000009361
Zebra mbuna	MODERN SPECIES	1101	gale (ENSMZEG00005006051) #7	zbtb8a (ENSMZEG00005006060)	hmgcl (ENSMZEG00005006073) #8	gjb3 (ENSMZEG00005006098)	ENSMZEG00005006102	gjb10 (ENSMZEG00005006107)	ppie (ENSMZEG00005006117)	pabpc4 (ENSMZEG00005006141)	ENSMZEG00005006191	tmem54a (ENSMZEG00005006199)	hdac1 (ENSMZEG00005006242)	lck (ENSMZEG00005006276)	FAM167B (ENSMZEG00005006294)	zgc:154055 (ENSMZEG00005006304)	tdh2 (ENSMZEG00005006315)	ENSMZEG00005006344 #22	clic4 (ENSMZEG00005006374) #23	runx3 (ENSMZEG00005006397) #24	syf2 (ENSMZEG00005006429) #27	rsrp1 (ENSMZEG00005006460)	mgst3b (ENSMZEG00005006473)	tmem50a (ENSMZEG00005006487) #29	rhd (ENSMZEG00005006508) #30	maco1b (ENSMZEG00005006525) #31	ldlrap1b (ENSMZEG00005006558) #32	ENSMZEG00005006576	ENSMZEG00005006593	FNDC5 (ENSMZEG00005006601)	ENSMZEG00005006630	olig4 (ENSMZEG00005006739)	bsdc1 (ENSMZEG00005006747)
Eastern happy	MODERN SPECIES	10	ENSACLG00000019373	gale (ENSACLG00000019383) #7	zbtb8a (ENSACLG00000019419)	hmgcl (ENSACLG00000019441) #8	gjb3 (ENSACLG00000019506)	ppie (ENSACLG00000019518)	ENSACLG00000019541	pabpc4 (ENSACLG00000019558)	ENSACLG00000019619	tmem54a (ENSACLG00000019637)	hdac1 (ENSACLG00000019646)	lck (ENSACLG00000019680)	FAM167B (ENSACLG00000019703)	zgc:154055 (ENSACLG00000019709)	tdh2 (ENSACLG00000019747)	ENSACLG00000019786 #22	clic4 (ENSACLG00000019820) #23	runx3 (ENSACLG00000019835) #24	syf2 (ENSACLG00000019916) #27	rsrp1 (ENSACLG00000019962)	mgst3b (ENSACLG00000019979)	tmem50a (ENSACLG00000019995) #29	rhd (ENSACLG00000020023) #30	maco1b (ENSACLG00000020042) #31	ldlrap1b (ENSACLG00000020096) #32	ENSACLG00000020118	ENSACLG00000020130	FNDC5 (ENSACLG00000020153)	ENSACLG00000020176	olig4 (ENSACLG00000020327)	bsdc1 (ENSACLG00000020348)
Burton s mouthbrooder	MODERN SPECIES	317	gale (ENSHBUG00000020077) #7	zbtb8a (ENSHBUG00000020088)	gjb3 (ENSHBUG00000000791)	hmgcl (ENSHBUG00000020109) #8	gjb10 (ENSHBUG00000020130)	ENSHBUG00000020145	ppie (ENSHBUG00000020159)	pabpc4 (ENSHBUG00000020206)	ENSHBUG00000020245	tmem54a (ENSHBUG00000020256)	hdac1 (ENSHBUG00000020299)	lck (ENSHBUG00000020310)	FAM167B (ENSHBUG00000020323)	zgc:154055 (ENSHBUG00000020335)	tdh2 (ENSHBUG00000020348)	ENSHBUG00000020354 #22	srrm1 (ENSHBUG00000020364)	clic4 (ENSHBUG00000020400) #23	runx3 (ENSHBUG00000020440) #24	syf2 (ENSHBUG00000020477) #27	rsrp1 (ENSHBUG00000020488)	mgst3b (ENSHBUG00000020497)	tmem50a (ENSHBUG00000020516) #29	rhd (ENSHBUG00000020540) #30	maco1b (ENSHBUG00000020587) #31	ldlrap1b (ENSHBUG00000020615) #32	ENSHBUG00000020640	ENSHBUG00000020649	FNDC5 (ENSHBUG00000020663)	olig4 (ENSHBUG00000000902)	bsdc1 (ENSHBUG00000020704)
Lyretail cichlid	MODERN SPECIES	363	ENSNBRG00000009503	gale (ENSNBRG00000009542) #7	zbtb8a (ENSNBRG00000009610)	hmgcl (ENSNBRG00000009646) #8	gjb3 (ENSNBRG00000009674)	gjb10 (ENSNBRG00000009683)	ENSNBRG00000009692	pabpc4 (ENSNBRG00000009708)	tmem54a (ENSNBRG00000009726)	hdac1 (ENSNBRG00000009739)	lck (ENSNBRG00000009945)	FAM167B (ENSNBRG00000010825)	ENSNBRG00000010838	zgc:154055 (ENSNBRG00000010853)	tdh2 (ENSNBRG00000010876)	ENSNBRG00000010911 #22	clic4 (ENSNBRG00000010948) #23	clic4 (ENSNBRG00000011002) #23	runx3 (ENSNBRG00000011020) #24
Midas cichlid	MODERN SPECIES	1020	gale (ENSACIG00000022465) #7	zbtb8a (ENSACIG00000022508)	hmgcl (ENSACIG00000022516) #8	gjb3 (ENSACIG00000022525)	gjb10 (ENSACIG00000022530)	ENSACIG00000022534	ppie (ENSACIG00000022599)	pabpc4 (ENSACIG00000023343)	ENSACIG00000023352	tmem54a (ENSACIG00000023358)	hdac1 (ENSACIG00000023366)	lck (ENSACIG00000023371)	FAM167B (ENSACIG00000023377)	zgc:154055 (ENSACIG00000023380)	tdh2 (ENSACIG00000023390)	ENSACIG00000023398 #22	clic4 (ENSACIG00000023438) #23	runx3 (ENSACIG00000023683) #24	syf2 (ENSACIG00000023688) #27	ENSACIG00000023692	mgst3b (ENSACIG00000023697)	tmem50a (ENSACIG00000023700) #29	rhd (ENSACIG00000023704) #30	maco1b (ENSACIG00000023707) #31	ldlrap1b (ENSACIG00000023714) #32	ENSACIG00000023724	FNDC5 (ENSACIG00000023735)	olig4 (ENSACIG00000023738)	bsdc1 (ENSACIG00000023741)	marcksl1a (ENSACIG00000023744)	gjb9a (ENSACIG00000023748)
Atherinomorphae	ANCESTRAL SPECIES	11	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01020000230683	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000177142	ENSGT00940000158790	ENSGT00940000177851	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00940000165733	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981	ENSGT00390000004923.A.c.b	ENSGT00940000166262	ENSGT00390000009361	ENSGT00940000165880.b	ENSGT01030000234513.A.a.a.a.b.d.b
Oryzias	ANCESTRAL SPECIES	3	ENSGT00940000158484 #8	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01020000230683	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000158790	ENSGT00940000177851	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00940000165733	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981	ENSGT00390000004923.A.c.b	ENSGT00940000166262	ENSGT00390000009361	ENSGT00940000165880.b	ENSGT01030000234513.A.a.a.a.b.d.b
Oryzias_a	ANCESTRAL SPECIES	11	ENSGT00940000157491	ENSGT00940000158484 #8	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000158790	ENSGT00940000177851	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT01030000234896	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981	ENSGT00390000004923.A.c.b	ENSGT00940000166262	ENSGT00390000009361	ENSGT00940000165880.b	ENSGT01030000234513.A.a.a.a.b.d.b
Japanese Medaka HdrR	MODERN SPECIES	14	zbtb8a (ENSORLG00000017455)	hmgcl (ENSORLG00000017461) #8	gjb3 (ENSORLG00000017465)	gjb10 (ENSORLG00000017468)	ENSORLG00000017469	ENSORLG00000026657	pabpc4 (ENSORLG00000017479)	ENSORLG00000017484	tmem54a (ENSORLG00000017487)	HDAC1 (ENSORLG00000017491)	ENSORLG00000026306	lck (ENSORLG00000017495)	FAM167B (ENSORLG00000027088)	zgc:154055 (ENSORLG00000017503)	tdh2 (ENSORLG00000017505)	ENSORLG00000017510 #22	clic4 (ENSORLG00000017513) #23	runx3 (ENSORLG00000017515) #24	syf2 (ENSORLG00000028820) #27	rsrp1 (ENSORLG00000017529)	ENSORLG00000024423	mgst3b (ENSORLG00000017532)	tmem50a (ENSORLG00000029303) #29	rhd (ENSORLG00000017542) #30	maco1b (ENSORLG00000017545) #31	ldlrap1b (ENSORLG00000017549) #32	ENSORLG00000025178	FNDC5 (ENSORLG00000017554)	olig4 (ENSORLG00000017556)	ENSORLG00000022574	bsdc1 (ENSORLG00000017563)
Chinese medaka	MODERN SPECIES	1014	zbtb8a (ENSOSIG00000006925)	hmgcl (ENSOSIG00000006926) #8	gjb3 (ENSOSIG00000007060)	gjb10 (ENSOSIG00000007063)	ppie (ENSOSIG00000007070)	ENSOSIG00000007158	pabpc4 (ENSOSIG00000007160)	ENSOSIG00000007227	tmem54a (ENSOSIG00000007228)	hdac1 (ENSOSIG00000007229)	ENSOSIG00000007360	lck (ENSOSIG00000007362)	FAM167B (ENSOSIG00000007363)	zgc:154055 (ENSOSIG00000007366)	tdh2 (ENSOSIG00000007368)	ENSOSIG00000007369 #22	clic4 (ENSOSIG00000007370) #23	runx3 (ENSOSIG00000007395) #24	syf2 (ENSOSIG00000007420) #27	mgst3b (ENSOSIG00000007422)	tmem50a (ENSOSIG00000007424) #29	rhd (ENSOSIG00000007429) #30	maco1b (ENSOSIG00000007432) #31	ldlrap1b (ENSOSIG00000007501) #32	FNDC5 (ENSOSIG00000007504)	olig4 (ENSOSIG00000007508)	bsdc1 (ENSOSIG00000007510)	marcksl1a (ENSOSIG00000007512)	gjb9a (ENSOSIG00000007513)	ptp4a2a (ENSOSIG00000007516)	ppp1r13ba (ENSOSIG00000007520)
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00730000111080.b #22
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01020000230683	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000177142	ENSGT00940000158790	ENSGT00940000177851	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00940000165733	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981	ENSGT00390000004923.A.c.b	ENSGT00940000166262	ENSGT00390000009361	ENSGT00940000165880.b	ENSGT00940000154664.h.n.c.d
NAME_4	ANCESTRAL SPECIES	56	ENSGT00940000162552.a.a	ENSGT00940000158000 #7	ENSGT00940000157491	ENSGT00940000158484 #8	ENSGT01030000234513.A.a.a.a.a.e	ENSGT01030000234513.A.a.a.a.b.c.b	ENSGT00940000158790	ENSGT00940000154788	ENSGT01030000234567.A.a.a.a.b	ENSGT00390000004700.a.g	ENSGT00940000154301.a.a	ENSGT00940000159864	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000166051	ENSGT00730000111080.b #22	ENSGT00940000155017 #23	ENSGT00940000156598.c.b #24	ENSGT00390000017845 #27	ENSGT00730000112145	ENSGT00940000165706	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c.e.a #31	ENSGT00940000157118.c.a #32	ENSGT00730000113981	ENSGT00390000004923.A.c.b	ENSGT00940000166262	ENSGT00390000009361	ENSGT00940000165880.b	ENSGT00940000154664.h.n.c.d
Sheepshead minnow	MODERN SPECIES	733						gjb10 (ENSCVAG00000019207)	ppie (ENSCVAG00000019238)	pabpc4 (ENSCVAG00000019246)	ENSCVAG00000019266	tmem54a (ENSCVAG00000019276)	hdac1 (ENSCVAG00000019304)	lck (ENSCVAG00000019320)	FAM167B (ENSCVAG00000019326)	ENSCVAG00000019339	tdh2 (ENSCVAG00000000503)	ENSCVAG00000000504 #22	clic4 (ENSCVAG00000019464) #23	runx3 (ENSCVAG00000019490) #24	rsrp1 (ENSCVAG00000019513)	syf2 (ENSCVAG00000019543) #27	mgst3b (ENSCVAG00000019559)	rhd (ENSCVAG00000019638) #30	maco1b (ENSCVAG00000019666) #31	ldlrap1b (ENSCVAG00000019724) #32
Mummichog	MODERN SPECIES	2192	insm1b (ENSFHEG00000007831)	gale (ENSFHEG00000007808) #7	zbtb8a (ENSFHEG00000007755)	hmgcl (ENSFHEG00000007740) #8	gjb3 (ENSFHEG00000007587)	gjb10 (ENSFHEG00000007578)	ppie (ENSFHEG00000007560)	pabpc4 (ENSFHEG00000007548)	ENSFHEG00000007478	tmem54a (ENSFHEG00000007474)	hdac1 (ENSFHEG00000007464)	lck (ENSFHEG00000000605)	FAM167B (ENSFHEG00000007406)	zgc:154055 (ENSFHEG00000007402)	tdh2 (ENSFHEG00000007389)	ENSFHEG00000007359 #22	clic4 (ENSFHEG00000007302) #23	runx3 (ENSFHEG00000007272) #24	syf2 (ENSFHEG00000007238) #27	rsrp1 (ENSFHEG00000007022)	mgst3b (ENSFHEG00000007006)	tmem50a (ENSFHEG00000007004) #29	rhd (ENSFHEG00000006989) #30	maco1b (ENSFHEG00000006949) #31	ldlrap1b (ENSFHEG00000006904) #32	ENSFHEG00000006873	FNDC5 (ENSFHEG00000006855)	olig4 (ENSFHEG00000006813)	bsdc1 (ENSFHEG00000006800)	marcksl1a (ENSFHEG00000006773)	ENSFHEG00000006765
Spotted gar	MODERN SPECIES	672	ppp1r8a (ENSLOCG00000003050)	med18 (ENSLOCG00000003042)	foxo6b (ENSLOCG00000003028)	SCMH1 (ENSLOCG00000003009)	ENSLOCG00000002995	cited4b (ENSLOCG00000018276)	sh3d21 (ENSLOCG00000002978)	ENSLOCG00000002939	map7d1a (ENSLOCG00000002929)	MAP3K6 (ENSLOCG00000002899)	stpg1 (ENSLOCG00000002882) #18	ENSLOCG00000002868	ENSLOCG00000002832 #16	nipal3 (ENSLOCG00000002817) #19	rcan3 (ENSLOCG00000002797) #20	SRRM1 (ENSLOCG00000002785) #22	clic4 (ENSLOCG00000002762) #23	runx3 (ENSLOCG00000002744) #24	syf2 (ENSLOCG00000002728) #27	mgst3b (ENSLOCG00000002714)	tmem50a (ENSLOCG00000002702) #29	rhd (ENSLOCG00000002671) #30	maco1b (ENSLOCG00000002652) #31	ldlrap1b (ENSLOCG00000002632) #32	fndc5b (ENSLOCG00000002622)	ENSLOCG00000002592	olig4 (ENSLOCG00000018275)	bsdc1 (ENSLOCG00000002577)	marcksl1a (ENSLOCG00000002564)	hdac1 (ENSLOCG00000002539)	lck (ENSLOCG00000002518)
Euteleostomi	DUPLICATION
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Mammalia	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Theria	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Euarchontoglires_A	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Glires	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Rabbit	MODERN SPECIES	20	NKTR (ENSOCUG00000013128)	SEC22C (ENSOCUG00000013119)	VIPR1 (ENSOCUG00000013106)	LYZL4 (ENSOCUG00000013102)	ENSOCUG00000035357	ENSOCUG00000015676	ENSOCUG00000015654	ULK4 (ENSOCUG00000013497)	CTNNB1 (ENSOCUG00000001468)	ENSOCUG00000034871	ENSOCUG00000022043	ZNF621 (ENSOCUG00000028987)	RPL14 (ENSOCUG00000010309)	ENTPD3 (ENSOCUG00000010306)	MYRIP (ENSOCUG00000004332)	ENSOCUG00000029704 ##22	ENSOCUG00000030913	ENSOCUG00000031611	ENSOCUG00000007018	SLC25A38 (ENSOCUG00000013998)	CCR8 (ENSOCUG00000011958)	CX3CR1 (ENSOCUG00000027509)	XIRP1 (ENSOCUG00000011396)	CSRNP1 (ENSOCUG00000022080)	TTC21A (ENSOCUG00000005473)	GORASP1 (ENSOCUG00000005467)	WDR48 (ENSOCUG00000005460)	WNT7A (ENSOCUG00000013432)	FBLN2 (ENSOCUG00000005900)	HDAC11 (ENSOCUG00000009839)	NUP210 (ENSOCUG00000014236)
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Aplocheiloidei	ANCESTRAL SPECIES																	ENSGT00730000111080.a.a ##22
Mangrove rivulus	MODERN SPECIES	1	insm1b (ENSKMAG00000013434)	gale (ENSKMAG00000013456) #7	zbtb8a (ENSKMAG00000013481)	hmgcl (ENSKMAG00000013499) #8	gjb3 (ENSKMAG00000013536)	gjb10 (ENSKMAG00000013543)	ppie (ENSKMAG00000013555)	pabpc4 (ENSKMAG00000013597)	ENSKMAG00000013640	tmem54a (ENSKMAG00000013667)	hdac1 (ENSKMAG00000013680)	lck (ENSKMAG00000013725)	FAM167B (ENSKMAG00000013748)	zgc:154055 (ENSKMAG00000013766)	tdh2 (ENSKMAG00000013792)	ENSKMAG00000013810 ##22	clic4 (ENSKMAG00000013816) #23	runx3 (ENSKMAG00000013834) #24	syf2 (ENSKMAG00000013856) #27	rsrp1 (ENSKMAG00000013882)	mgst3b (ENSKMAG00000013896)	tmem50a (ENSKMAG00000013950) #29	rhd (ENSKMAG00000013967) #30	maco1b (ENSKMAG00000013993) #31	ldlrap1b (ENSKMAG00000014035) #32	COL12A1 (ENSKMAG00000014065)	ENSKMAG00000014168	ENSKMAG00000014226	ENSKMAG00000014249	DLGAP2 (ENSKMAG00000014285)	cln8 (ENSKMAG00000014323)
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00730000111080.a.b ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00730000111080.a.b ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00730000111080.a.b ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00730000111080.a.b ##22
Mammalia	ANCESTRAL SPECIES																	ENSGT00730000111080.a.b ##22
Theria	ANCESTRAL SPECIES																	ENSGT00730000111080.a.b ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00730000111080.a.b ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00730000111080.a.b ##22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00730000111080.a.b ##22
Euarchontoglires_A	ANCESTRAL SPECIES																	ENSGT00730000111080.a.b ##22
Glires	ANCESTRAL SPECIES																	ENSGT00730000111080.a.b ##22
Lagomorpha	ANCESTRAL SPECIES	21	ENSGT00940000156197	ENSGT00940000158000 #7	ENSGT00940000158484 #8	ENSGT00440000035378.c #9	ENSGT01060000248564.a.b #10	ENSGT00530000063881.a.b #11	ENSGT00940000154450 #12	ENSGT00940000158669 #13	ENSGT00940000161366 #14	ENSGT00510000048978 #15	ENSGT00940000157970 #16	ENSGT00390000011598 #18	ENSGT00940000158233 #19	ENSGT00940000159501 #20	ENSGT00390000004116 #21	ENSGT00730000111080.a.b ##22	ENSGT00940000155017 #23	ENSGT00940000156598 #24	ENSGT00390000017845 #27	ENSGT00940000157715 #29	ENSGT00950000182844.a.b #30	ENSGT00390000016613.c #31	ENSGT00940000157118.c.a #32	ENSGT00940000159312.k #34	ENSGT00390000005972 #35	ENSGT00950000183215.c.b #36	ENSGT00390000003280 #37	ENSGT00940000161438	ENSGT01030000234597.a.a	ENSGT00390000005233.a	ENSGT00940000161960
Rabbit	MODERN SPECIES	4	ENSOCUG00000012707	PITHD1 (ENSOCUG00000013653)	GALE (ENSOCUG00000013674) #7	LYPLA2 (ENSOCUG00000013660)	FUCA1 (ENSOCUG00000006507) #9	CNR2 (ENSOCUG00000026372) #10	ENSOCUG00000038691 #11	SRSF10 (ENSOCUG00000029326) #12	MYOM3 (ENSOCUG00000006728) #13	IL22RA1 (ENSOCUG00000006743) #14	IFNLR1 (ENSOCUG00000001490) #15	GRHL3 (ENSOCUG00000013357) #16	STPG1 (ENSOCUG00000013373) #18	NIPAL3 (ENSOCUG00000000381) #19	ENSOCUG00000005252 #21	ENSOCUG00000008438 ##22	CLIC4 (ENSOCUG00000003196) #23	ENSOCUG00000017751 #24	ENSOCUG00000036162 #24	ENSOCUG00000033189	SYF2 (ENSOCUG00000013050) #27	ENSOCUG00000001820 #29	ENSOCUG00000001823 #30	MACO1 (ENSOCUG00000001827) #31	LDLRAP1 (ENSOCUG00000008056) #32	ENSOCUG00000008635 #34	RRAGC (ENSOCUG00000016521)	ENSOCUG00000022203	GJA9 (ENSOCUG00000016515)	RHBDL2 (ENSOCUG00000016197)	ENSOCUG00000005500