Sarcopterygii	ANCESTRAL SPECIES	6	ENSGT00940000165309	ENSGT00730000111641	ENSGT00940000159892	ENSGT00940000155865	ENSGT00890000139436.A.a	ENSGT00940000167138	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00390000009678 #19	ENSGT01050000244882.b.c.a ##33	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873	ENSGT00950000183006.A.a.b ##32	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36
Tetrapoda	ANCESTRAL SPECIES	14											ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873	ENSGT00950000183006.A.a.b ##32	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36
Amniota	ANCESTRAL SPECIES	22	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873	ENSGT00950000183006.A.a.b ##32	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36
Mammalia	ANCESTRAL SPECIES	18	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Theria	ANCESTRAL SPECIES	28	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Eutheria	ANCESTRAL SPECIES	14	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00910000146944	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Glires	ANCESTRAL SPECIES	2	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Rodentia	ANCESTRAL SPECIES	2	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Rodentia_B	ANCESTRAL SPECIES	26	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Myomorpha	ANCESTRAL SPECIES	36	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Muroidea	ANCESTRAL SPECIES	37	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00960000189964 #25	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00960000189964 #25	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00960000189964 #25	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37
Northern American deer mouse	MODERN SPECIES	16	ENSPEMG00000026210 #7	Prok2 (ENSPEMG00000030947) #8	ENSPEMG00000028366 #9	ENSPEMG00000017621 #10	Shq1 (ENSPEMG00000000251) #11	Gxylt2 (ENSPEMG00000005596) #12	Pdzrn3 (ENSPEMG00000019769) #13	Cntn3 (ENSPEMG00000014200) #14	Chl1 (ENSPEMG00000023675) #15	Cntn6 (ENSPEMG00000019384) #16	Cntn4 (ENSPEMG00000020085) #17	Il5ra (ENSPEMG00000000193) #18	Trnt1 (ENSPEMG00000019845) #19	Crbn (ENSPEMG00000020177) #20	Lrrn1 (ENSPEMG00000019903) #21	Setmar (ENSPEMG00000023423) #22	Sumf1 (ENSPEMG00000012549) #23	Itpr1 (ENSPEMG00000018533) #24	ENSPEMG00000025770 #25	Bhlhe40 (ENSPEMG00000028508) #26	Arl8b (ENSPEMG00000029131) #27	Edem1 (ENSPEMG00000005304) #28	Grm7 (ENSPEMG00000029693) #29	Lmcd1 (ENSPEMG00000013048) #30	Ssu2 (ENSPEMG00000022560) #31	Cav3 (ENSPEMG00000029098) #32	Oxtr (ENSPEMG00000027376) #33	Rad18 (ENSPEMG00000022129) #34	Srgap3 (ENSPEMG00000022268) #35	Thumpd3 (ENSPEMG00000022411) #36	Setd5 (ENSPEMG00000022422) #37
Prairie vole	MODERN SPECIES	84	ENSMOCG00000000955	Pdzrn3 (ENSMOCG00000015544) #13	ENSMOCG00000009808	Cntn3 (ENSMOCG00000007453) #14	ENSMOCG00000021562	ENSMOCG00000002512 #15	ENSMOCG00000020899 #15	ENSMOCG00000016932	ENSMOCG00000009333	Cntn6 (ENSMOCG00000005399) #16	Cntn4 (ENSMOCG00000013257) #17	Il5ra (ENSMOCG00000015311) #18	Trnt1 (ENSMOCG00000004539) #19	Crbn (ENSMOCG00000019318) #20	Lrrn1 (ENSMOCG00000001702) #21	Setmar (ENSMOCG00000003026) #22	Sumf1 (ENSMOCG00000014598) #23	Itpr1 (ENSMOCG00000002247) #24	Bhlhe40 (ENSMOCG00000014385) #26	Arl8b (ENSMOCG00000018769) #27	Edem1 (ENSMOCG00000020129) #28	ENSMOCG00000009387	ENSMOCG00000016285	ENSMOCG00000020138	Grm7 (ENSMOCG00000016029) #29	Lmcd1 (ENSMOCG00000013328) #30	Ssu2 (ENSMOCG00000006487) #31	Cav3 (ENSMOCG00000002186) #32	OXTR (ENSMOCG00000002867) #33	Rad18 (ENSMOCG00000009114) #34	Srgap3 (ENSMOCG00000001918) #35
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Golden Hamster	MODERN SPECIES	622	Virma (ENSMAUG00000007195)	Fsbp (ENSMAUG00000021489)	Rad54b (ENSMAUG00000013586)	Gem (ENSMAUG00000006962)	Cdh17 (ENSMAUG00000009983)	Tmem67 (ENSMAUG00000001046)	ENSMAUG00000021752	Cibar1 (ENSMAUG00000009551)	Triqk (ENSMAUG00000012998)	Cntn4 (ENSMAUG00000009508) #17	Il5ra (ENSMAUG00000021101) #18	Trnt1 (ENSMAUG00000020707) #19	Crbn (ENSMAUG00000001100) #20	Lrrn1 (ENSMAUG00000005827) #21	ENSMAUG00000009893	Setmar (ENSMAUG00000020081) #22	Sumf1 (ENSMAUG00000014146) #23	Itpr1 (ENSMAUG00000016842) #24	Bhlhe40 (ENSMAUG00000009803) #26	Arl8b (ENSMAUG00000016691) #27	Edem1 (ENSMAUG00000008525) #28	ENSMAUG00000019900	Grm7 (ENSMAUG00000021392) #29	Lmcd1 (ENSMAUG00000014020) #30	Ssu2 (ENSMAUG00000020801) #31	Cav3 (ENSMAUG00000019157) #32	Oxtr (ENSMAUG00000020582) #33	Rad18 (ENSMAUG00000020642) #34	Srgap3 (ENSMAUG00000020606) #35	Thumpd3 (ENSMAUG00000012250) #36	Setd5 (ENSMAUG00000016093) #37
Chinese hamster chok1gshd	MODERN SPECIES	144	Gxylt2 (ENSCGRG00001012822) #12	Ppp4r2 (ENSCGRG00001010724)	Pdzrn3 (ENSCGRG00001017365) #13	ENSCGRG00001003940	Cntn3 (ENSCGRG00001013551) #14	ENSCGRG00001015607	ENSCGRG00001015306	Chl1 (ENSCGRG00001021609) #15	Cntn6 (ENSCGRG00001012547) #16	Cntn4 (ENSCGRG00001005552) #17	Il5ra (ENSCGRG00001023890) #18	Trnt1 (ENSCGRG00001009998) #19	Crbn (ENSCGRG00001014850) #20	Lrrn1 (ENSCGRG00001000760) #21	ENSCGRG00001003904	Setmar (ENSCGRG00001005415) #22	Sumf1 (ENSCGRG00001010527) #23	Itpr1 (ENSCGRG00001019657) #24	Bhlhe40 (ENSCGRG00001015526) #26	Arl8b (ENSCGRG00001018115) #27	Edem1 (ENSCGRG00001020705) #28	ENSCGRG00001023368	Grm7 (ENSCGRG00001005305) #29	Lmcd1 (ENSCGRG00001009463) #30	Ssu2 (ENSCGRG00001012512) #31	Cav3 (ENSCGRG00001014266) #32	Oxtr (ENSCGRG00001014988) #33	ENSCGRG00001015311	ENSCGRG00001018154 #34	ENSCGRG00001021718	Srgap3 (ENSCGRG00001010935) #35
Murinae	ANCESTRAL SPECIES	4	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00960000189964 #25	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37
Mus	ANCESTRAL SPECIES	12	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Mus_A	ANCESTRAL SPECIES	7	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Mus_B	ANCESTRAL SPECIES	15	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Mouse	MODERN SPECIES	15	Gpr27 (ENSMUSG00000072875)	Prok2 (ENSMUSG00000030069) #8	Rybp (ENSMUSG00000072872) #10	Shq1 (ENSMUSG00000035378) #11	Gxylt2 (ENSMUSG00000030074) #12	Ppp4r2 (ENSMUSG00000052144)	Pdzrn3 (ENSMUSG00000035357) #13	Cntn3 (ENSMUSG00000030075) #14	Chl1 (ENSMUSG00000030077) #15	Cntn6 (ENSMUSG00000030092) #16	Cntn4 (ENSMUSG00000064293) #17	Il5ra (ENSMUSG00000005364) #18	Trnt1 (ENSMUSG00000013736) #19	Crbn (ENSMUSG00000005362) #20	Lrrn1 (ENSMUSG00000034648) #21	Setmar (ENSMUSG00000034639) #22	Sumf1 (ENSMUSG00000030101) #23	Itpr1 (ENSMUSG00000030102) #24	Bhlhe40 (ENSMUSG00000030103) #26	Arl8b (ENSMUSG00000030105) #27	Edem1 (ENSMUSG00000030104) #28	Grm7 (ENSMUSG00000056755) #29	Lmcd1 (ENSMUSG00000057604) #30	Ssu2 (ENSMUSG00000034387) #31	Cav3 (ENSMUSG00000062694) #32	Oxtr (ENSMUSG00000049112) #33	Rad18 (ENSMUSG00000030254) #34	Srgap3 (ENSMUSG00000030257) #35	Thumpd3 (ENSMUSG00000030264) #36	Setd5 (ENSMUSG00000034269) #37	Lhfpl4 (ENSMUSG00000042873)
Mus_C	ANCESTRAL SPECIES	18	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
spretus	MODERN SPECIES	15	Gpr27 (MGP_SPRETEiJ_G0029714)	Prok2 (MGP_SPRETEiJ_G0029715) #8	Rybp (MGP_SPRETEiJ_G0029716) #10	Shq1 (MGP_SPRETEiJ_G0029717) #11	Gxylt2 (MGP_SPRETEiJ_G0029718) #12	Ppp4r2 (MGP_SPRETEiJ_G0029719)	Pdzrn3 (MGP_SPRETEiJ_G0029720) #13	Cntn3 (MGP_SPRETEiJ_G0029721) #14	Chl1 (MGP_SPRETEiJ_G0029722) #15	Cntn6 (MGP_SPRETEiJ_G0029723) #16	Cntn4 (MGP_SPRETEiJ_G0029724) #17	Il5ra (MGP_SPRETEiJ_G0029725) #18	Trnt1 (MGP_SPRETEiJ_G0029726) #19	Crbn (MGP_SPRETEiJ_G0029727) #20	Lrrn1 (MGP_SPRETEiJ_G0029728) #21	Setmar (MGP_SPRETEiJ_G0029729) #22	Sumf1 (MGP_SPRETEiJ_G0029730) #23	Itpr1 (MGP_SPRETEiJ_G0029731) #24	Bhlhe40 (MGP_SPRETEiJ_G0029732) #26	Arl8b (MGP_SPRETEiJ_G0029733) #27	Edem1 (MGP_SPRETEiJ_G0029734) #28	Grm7 (MGP_SPRETEiJ_G0029735) #29	Lmcd1 (MGP_SPRETEiJ_G0029736) #30	Ssu2 (MGP_SPRETEiJ_G0029737) #31	Cav3 (MGP_SPRETEiJ_G0029738) #32	Oxtr (MGP_SPRETEiJ_G0029739) #33	Rad18 (MGP_SPRETEiJ_G0029740) #34	Srgap3 (MGP_SPRETEiJ_G0029741) #35	Thumpd3 (MGP_SPRETEiJ_G0029742) #36	Setd5 (MGP_SPRETEiJ_G0029743) #37	Lhfpl4 (MGP_SPRETEiJ_G0029744)
Steppe mouse	MODERN SPECIES	2978																ENSMSIG00000009208 #22	Sumf1 (ENSMSIG00000009243) #23	Itpr1 (ENSMSIG00000009395) #24	Bhlhe40 (ENSMSIG00000009908) #26	Arl8b (ENSMSIG00000009944) #27	Edem1 (ENSMSIG00000010010) #28	ENSMSIG00000010037
Ryukyu mouse	MODERN SPECIES	15	Gpr27 (MGP_CAROLIEiJ_G0028686)	Prok2 (MGP_CAROLIEiJ_G0028687) #8	Rybp (MGP_CAROLIEiJ_G0028688) #10	Shq1 (MGP_CAROLIEiJ_G0028689) #11	Gxylt2 (MGP_CAROLIEiJ_G0028690) #12	Ppp4r2 (MGP_CAROLIEiJ_G0028691)	Pdzrn3 (MGP_CAROLIEiJ_G0028692) #13	Cntn3 (MGP_CAROLIEiJ_G0028693) #14	Chl1 (MGP_CAROLIEiJ_G0028694) #15	Cntn6 (MGP_CAROLIEiJ_G0028695) #16	Cntn4 (MGP_CAROLIEiJ_G0028696) #17	Il5ra (MGP_CAROLIEiJ_G0028697) #18	Trnt1 (MGP_CAROLIEiJ_G0028698) #19	Crbn (MGP_CAROLIEiJ_G0028699) #20	Lrrn1 (MGP_CAROLIEiJ_G0028700) #21	Setmar (MGP_CAROLIEiJ_G0028701) #22	Sumf1 (MGP_CAROLIEiJ_G0028702) #23	Itpr1 (MGP_CAROLIEiJ_G0028703) #24	Bhlhe40 (MGP_CAROLIEiJ_G0028704) #26	Arl8b (MGP_CAROLIEiJ_G0028705) #27	Edem1 (MGP_CAROLIEiJ_G0028706) #28	Grm7 (MGP_CAROLIEiJ_G0028707) #29	Lmcd1 (MGP_CAROLIEiJ_G0028708) #30	Ssu2 (MGP_CAROLIEiJ_G0028709) #31	Cav3 (MGP_CAROLIEiJ_G0028710) #32	Oxtr (MGP_CAROLIEiJ_G0028711) #33	Rad18 (MGP_CAROLIEiJ_G0028712) #34	Srgap3 (MGP_CAROLIEiJ_G0028713) #35	MGP_CAROLIEiJ_G0028714 #36	Setd5 (MGP_CAROLIEiJ_G0028715) #37	Lhfpl4 (MGP_CAROLIEiJ_G0028716)
Shrew mouse	MODERN SPECIES	11	Gpr27 (MGP_PahariEiJ_G0022437)	Prok2 (MGP_PahariEiJ_G0022438) #8	Rybp (MGP_PahariEiJ_G0022439) #10	Shq1 (MGP_PahariEiJ_G0022440) #11	Gxylt2 (MGP_PahariEiJ_G0022441) #12	Ppp4r2 (MGP_PahariEiJ_G0022442)	Pdzrn3 (MGP_PahariEiJ_G0022443) #13	Cntn3 (MGP_PahariEiJ_G0022444) #14	Chl1 (MGP_PahariEiJ_G0022445) #15	Cntn6 (MGP_PahariEiJ_G0022446) #16	MGP_PahariEiJ_G0022447 #17	Il5ra (MGP_PahariEiJ_G0022448) #18	Trnt1 (MGP_PahariEiJ_G0022449) #19	Crbn (MGP_PahariEiJ_G0022450) #20	Lrrn1 (MGP_PahariEiJ_G0022451) #21	Setmar (MGP_PahariEiJ_G0022452) #22	Sumf1 (MGP_PahariEiJ_G0022453) #23	Itpr1 (MGP_PahariEiJ_G0022454) #24	Bhlhe40 (MGP_PahariEiJ_G0022455) #26	Arl8b (MGP_PahariEiJ_G0022456) #27	Edem1 (MGP_PahariEiJ_G0022457) #28	Grm7 (MGP_PahariEiJ_G0022458) #29	Lmcd1 (MGP_PahariEiJ_G0022459) #30	Ssu2 (MGP_PahariEiJ_G0022460) #31	Cav3 (MGP_PahariEiJ_G0022461) #32	Oxtr (MGP_PahariEiJ_G0022462) #33	Rad18 (MGP_PahariEiJ_G0022463) #34	Srgap3 (MGP_PahariEiJ_G0022464) #35	Thumpd3 (MGP_PahariEiJ_G0022465) #36	Setd5 (MGP_PahariEiJ_G0022466) #37	Lhfpl4 (MGP_PahariEiJ_G0022467)
Rat	MODERN SPECIES	14	Shq1 (ENSRNOG00000005433) #11	Actg1-ps9 (ENSRNOG00000062691)	Gxylt2 (ENSRNOG00000005621) #12	Ppp4r2 (ENSRNOG00000024647)	Pdzrn3 (ENSRNOG00000057556) #13	Cntn3 (ENSRNOG00000006144) #14	Chl1 (ENSRNOG00000045771) #15	ENSRNOG00000065903	AABR07061614.1 (ENSRNOG00000032820)	Cntn6 (ENSRNOG00000032517) #16	Cntn4 (ENSRNOG00000005652) #17	Il5ra (ENSRNOG00000005954) #18	Trnt1 (ENSRNOG00000006432) #19	Crbn (ENSRNOG00000006534) #20	Lrrn1 (ENSRNOG00000006802) #21	Setmar (ENSRNOG00000006806) #22	Sumf1 (ENSRNOG00000006813) #23	Itpr1 (ENSRNOG00000007104) #24	AABR07061707.1 (ENSRNOG00000052718) #25	Bhlhe40 (ENSRNOG00000007152) #26	Arl8b (ENSRNOG00000055860) #27	Edem1 (ENSRNOG00000055365) #28	Grm7 (ENSRNOG00000005662) #29	LOC120102505 (ENSRNOG00000042804)	ENSRNOG00000064122	Lmcd1 (ENSRNOG00000005690) #30	Ssuh2 (ENSRNOG00000005734) #31	Cav3 (ENSRNOG00000005798) #32	Oxtr (ENSRNOG00000005806) #33	Rad18 (ENSRNOG00000005907) #34	Srgap3 (ENSRNOG00000006509) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1692									ENSNGAG00000000188	Cntn4 (ENSNGAG00000000209) #17	Il5ra (ENSNGAG00000008379) #18	Trnt1 (ENSNGAG00000000537) #19	Crbn (ENSNGAG00000005594) #20	ENSNGAG00000016208	Lrrn1 (ENSNGAG00000000839) #21	Setmar (ENSNGAG00000012182) #22	Sumf1 (ENSNGAG00000015609) #23	Itpr1 (ENSNGAG00000010432) #24	Bhlhe40 (ENSNGAG00000000305) #26	Arl8b (ENSNGAG00000012594) #27	Edem1 (ENSNGAG00000017076) #28
Lesser Egyptian jerboa	MODERN SPECIES	45	Gxylt2 (ENSJJAG00000013774) #12	ENSJJAG00000022712	Pdzrn3 (ENSJJAG00000000291) #13	Cntn3 (ENSJJAG00000012448) #14	ENSJJAG00000000622	Chl1 (ENSJJAG00000020689) #15	ENSJJAG00000017679	Cntn6 (ENSJJAG00000013679) #16	ENSJJAG00000010075	Cntn4 (ENSJJAG00000023102) #17	Il5ra (ENSJJAG00000010396) #18	Trnt1 (ENSJJAG00000018561) #19	Crbn (ENSJJAG00000011234) #20	ENSJJAG00000004639	Lrrn1 (ENSJJAG00000021670) #21	Setmar (ENSJJAG00000024359) #22	Sumf1 (ENSJJAG00000014950) #23	Itpr1 (ENSJJAG00000021325) #24	ENSJJAG00000015303	ENSJJAG00000022672 #26	Arl8b (ENSJJAG00000017608) #27	Edem1 (ENSJJAG00000007371) #28	ENSJJAG00000015222	ENSJJAG00000017538	Grm7 (ENSJJAG00000023200) #29	ENSJJAG00000016367	Lmcd1 (ENSJJAG00000016825) #30	Ssu2 (ENSJJAG00000023516) #31	Cav3 (ENSJJAG00000024313) #32	Oxtr (ENSJJAG00000016459) #33	ENSJJAG00000021410
Kangaroo rat	MODERN SPECIES	331	Eif4e3 (ENSDORG00000006531)	Prok2 (ENSDORG00000006150) #8	Rybp (ENSDORG00000015021) #10	ENSDORG00000029850 #11	Gxylt2 (ENSDORG00000010918) #12	ENSDORG00000023761	Pdzrn3 (ENSDORG00000002686) #13	Cntn3 (ENSDORG00000000121) #14	Chl1 (ENSDORG00000010546) #15	Cntn6 (ENSDORG00000005702) #16	Cntn4 (ENSDORG00000014028) #17	Il5ra (ENSDORG00000014033) #18	Trnt1 (ENSDORG00000014035) #19	Crbn (ENSDORG00000014038) #20	Lrrn1 (ENSDORG00000023814) #21	Setmar (ENSDORG00000026212) #22	Sumf1 (ENSDORG00000006695) #23	Itpr1 (ENSDORG00000005966) #24	Bhlhe40 (ENSDORG00000028127) #26	Arl8b (ENSDORG00000023904) #27	Edem1 (ENSDORG00000002004) #28	Grm7 (ENSDORG00000007450) #29	Lmcd1 (ENSDORG00000003932) #30	Ssu2 (ENSDORG00000009888) #31	Cav3 (ENSDORG00000023359) #32	Oxtr (ENSDORG00000007711) #33	ENSDORG00000029722	Rad18 (ENSDORG00000001099) #34	ENSDORG00000001101 #35	Thumpd3 (ENSDORG00000003257) #36	Setd5 (ENSDORG00000003260) #37
Rodentia_A	ANCESTRAL SPECIES	27	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Hystricomorpha	ANCESTRAL SPECIES	34	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000154607.b.a.n	ENSGT00940000162395	ENSGT01030000234626.C.i.b	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139
Hystricomorpha_a	ANCESTRAL SPECIES	45	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000154607.b.a.n	ENSGT00940000162395	ENSGT01030000234626.C.i.b	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139
Hystricomorpha_b	ANCESTRAL SPECIES	42	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000154607.b.a.n	ENSGT00940000162395	ENSGT01030000234626.C.i.b	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139
Long-tailed chinchilla	MODERN SPECIES	128	EIF4E3 (ENSCLAG00000003818)	PROK2 (ENSCLAG00000003618) #8	RYBP (ENSCLAG00000006008) #10	SHQ1 (ENSCLAG00000004206) #11	GXYLT2 (ENSCLAG00000003908) #12	PPP4R2 (ENSCLAG00000003231)	PDZRN3 (ENSCLAG00000010964) #13	CNTN3 (ENSCLAG00000009614) #14	CHL1 (ENSCLAG00000006459) #15	CNTN6 (ENSCLAG00000008602) #16	CNTN4 (ENSCLAG00000006463) #17	IL5RA (ENSCLAG00000005656) #18	TRNT1 (ENSCLAG00000005186) #19	CRBN (ENSCLAG00000004930) #20	LRRN1 (ENSCLAG00000004896) #21	ENSCLAG00000005640 #22	SUMF1 (ENSCLAG00000004509) #23	ITPR1 (ENSCLAG00000009445) #24	BHLHE40 (ENSCLAG00000003841) #26	ARL8B (ENSCLAG00000003184) #27	EDEM1 (ENSCLAG00000004922) #28	GRM7 (ENSCLAG00000004216) #29	ENSCLAG00000003666	SLC22A14 (ENSCLAG00000003320)	ENSCLAG00000003124	DLEC1 (ENSCLAG00000006229)	PLCD1 (ENSCLAG00000005079)	VILL (ENSCLAG00000005376)	CTDSPL (ENSCLAG00000004547)	ITGA9 (ENSCLAG00000004058)	GOLGA4 (ENSCLAG00000005913)
Degu	MODERN SPECIES	71	ENSODEG00000006984	PDZRN3 (ENSODEG00000008618) #13	CNTN3 (ENSODEG00000006512) #14	ENSODEG00000019392	CHL1 (ENSODEG00000010169) #15	ENSODEG00000019383	ENSODEG00000007284	CNTN6 (ENSODEG00000006499) #16	CNTN4 (ENSODEG00000007155) #17	IL5RA (ENSODEG00000006715) #18	TRNT1 (ENSODEG00000007597) #19	ENSODEG00000008720 #20	ENSODEG00000006737	LRRN1 (ENSODEG00000007430) #21	ENSODEG00000007585	ENSODEG00000006593 #22	SUMF1 (ENSODEG00000007677) #23	ITPR1 (ENSODEG00000007250) #24	ENSODEG00000008843 #26	ARL8B (ENSODEG00000009293) #27	EDEM1 (ENSODEG00000009933) #28	ENSODEG00000019586
Guinea pig	MODERN SPECIES	16	PROK2 (ENSCPOG00000033908) #8	RYBP (ENSCPOG00000032177) #10	SHQ1 (ENSCPOG00000011443) #11	GXYLT2 (ENSCPOG00000000442) #12	ENSCPOG00000030150	PPP4R2 (ENSCPOG00000036245)	PDZRN3 (ENSCPOG00000030488) #13	CNTN3 (ENSCPOG00000003218) #14	CHL1 (ENSCPOG00000014986) #15	CNTN6 (ENSCPOG00000001124) #16	CNTN4 (ENSCPOG00000026863) #17	Il5ra (ENSCPOG00000007845) #18	TRNT1 (ENSCPOG00000007849) #19	CRBN (ENSCPOG00000007851) #20	LRRN1 (ENSCPOG00000006583) #21	ENSCPOG00000019854 #22	SUMF1 (ENSCPOG00000014854) #23	ITPR1 (ENSCPOG00000005053) #24	BHLHE40 (ENSCPOG00000004014) #26	ENSCPOG00000002434	ENSCPOG00000020709	ARL8B (ENSCPOG00000031098) #27	EDEM1 (ENSCPOG00000031536) #28	GRM7 (ENSCPOG00000001886) #29	DLEC1 (ENSCPOG00000008859)	PLCD1 (ENSCPOG00000000596)	VILL (ENSCPOG00000029985)	CTDSPL (ENSCPOG00000000592)	ITGA9 (ENSCPOG00000014650)	GOLGA4 (ENSCPOG00000008525)	LRRFIP2 (ENSCPOG00000038703)
Naked mole-rat female	MODERN SPECIES	28	ENSHGLG00000041034	ENSHGLG00000038372	ENSHGLG00000003660	ENSHGLG00000032578	ENSHGLG00000002080 #14	ENSHGLG00000042664	ENSHGLG00000003621 #15	CNTN6 (ENSHGLG00000003847) #16	ENSHGLG00000038160	CNTN4 (ENSHGLG00000006279) #17	IL5RA (ENSHGLG00000003211) #18	ENSHGLG00000003649 #19	CRBN (ENSHGLG00000003957) #20	ENSHGLG00000002667	LRRN1 (ENSHGLG00000002701) #21	ENSHGLG00000049868 #22	ENSHGLG00000003230 #23	ENSHGLG00000004549 #24	ENSHGLG00000003679 #26	ENSHGLG00000033324	ENSHGLG00000048183	ENSHGLG00000042322	ENSHGLG00000039470	ENSHGLG00000002002	ENSHGLG00000001846 #27	ENSHGLG00000002073 #28	ENSHGLG00000050895	ENSHGLG00000044283	ENSHGLG00000042623	ENSHGLG00000046070	ENSHGLG00000040264
Sciuridae	ANCESTRAL SPECIES	41	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Eurasian red squirrel	MODERN SPECIES	10	RYBP (ENSSVLG00005010589) #10	SHQ1 (ENSSVLG00005010502) #11	GXYLT2 (ENSSVLG00005010448) #12	ENSSVLG00005010375	PDZRN3 (ENSSVLG00005010337) #13	ENSSVLG00005010270	CNTN3 (ENSSVLG00005025887) #14	CHL1 (ENSSVLG00005025877) #15	CNTN6 (ENSSVLG00005025861) #16	CNTN4 (ENSSVLG00005025842) #17	IL5RA (ENSSVLG00005025823) #18	TRNT1 (ENSSVLG00005025808) #19	CRBN (ENSSVLG00005025805) #20	ENSSVLG00005025803	LRRN1 (ENSSVLG00005025801) #21	ENSSVLG00005025798 #22	SUMF1 (ENSSVLG00005025792) #23	ITPR1 (ENSSVLG00005025774) #24	BHLHE40 (ENSSVLG00005025741) #26	ENSSVLG00005025728	ARL8B (ENSSVLG00005025718) #27	EDEM1 (ENSSVLG00005025704) #28	ENSSVLG00005025696	ENSSVLG00005025690	ENSSVLG00005025685	GRM7 (ENSSVLG00005025662) #29	LMCD1 (ENSSVLG00005025633) #30	SSUH2 (ENSSVLG00005025613) #31	CAV3 (ENSSVLG00005025604) #32	OXTR (ENSSVLG00005025596) #33	RAD18 (ENSSVLG00005025578) #34
Marmotini	ANCESTRAL SPECIES	49	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Marmotini_b	ANCESTRAL SPECIES	62									ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Arctic ground squirrel	MODERN SPECIES	23											CNTN4 (ENSUPAG00010022747) #17	IL5RA (ENSUPAG00010022771) #18	TRNT1 (ENSUPAG00010022775) #19	CRBN (ENSUPAG00010022777) #20	LRRN1 (ENSUPAG00010022779) #21	ENSUPAG00010022780 #22	SUMF1 (ENSUPAG00010022782) #23	ITPR1 (ENSUPAG00010022789) #24	BHLHE40 (ENSUPAG00010022838) #26	ARL8B (ENSUPAG00010022842) #27	EDEM1 (ENSUPAG00010022843) #28	GRM7 (ENSUPAG00010022847) #29	ENSUPAG00010022848	LMCD1 (ENSUPAG00010022849) #30	SSUH2 (ENSUPAG00010022850) #31	CAV3 (ENSUPAG00010022852) #32	OXTR (ENSUPAG00010022853) #33	RAD18 (ENSUPAG00010022854) #34	SRGAP3 (ENSUPAG00010022863) #35	THUMPD3 (ENSUPAG00010022869) #36	SETD5 (ENSUPAG00010022873) #37
Squirrel	MODERN SPECIES	177									CHL1 (ENSSTOG00000003470) #15	CNTN6 (ENSSTOG00000010495) #16	CNTN4 (ENSSTOG00000000147) #17	IL5RA (ENSSTOG00000007367) #18	TRNT1 (ENSSTOG00000000150) #19	CRBN (ENSSTOG00000028102) #20	LRRN1 (ENSSTOG00000020406) #21	ENSSTOG00000025520 #22	SUMF1 (ENSSTOG00000022603) #23	ITPR1 (ENSSTOG00000012015) #24	BHLHE40 (ENSSTOG00000000793) #26	ARL8B (ENSSTOG00000009294) #27	EDEM1 (ENSSTOG00000009304) #28	ENSSTOG00000024514 #29
Alpin marmot	MODERN SPECIES	40	ENSMMMG00000006861	PROK2 (ENSMMMG00000006869) #8	RYBP (ENSMMMG00000006873) #10	SHQ1 (ENSMMMG00000006887) #11	GXYLT2 (ENSMMMG00000006933) #12	ENSMMMG00000006977	PDZRN3 (ENSMMMG00000006989) #13	CNTN3 (ENSMMMG00000007027) #14	CHL1 (ENSMMMG00000007097) #15	CNTN6 (ENSMMMG00000007205) #16	CNTN4 (ENSMMMG00000007297) #17	IL5RA (ENSMMMG00000007442) #18	TRNT1 (ENSMMMG00000007463) #19	CRBN (ENSMMMG00000007485) #20	LRRN1 (ENSMMMG00000007534) #21	ENSMMMG00000007561 #22	SUMF1 (ENSMMMG00000007589) #23	ITPR1 (ENSMMMG00000007640) #24	BHLHE40 (ENSMMMG00000007823) #26	ARL8B (ENSMMMG00000007850) #27	EDEM1 (ENSMMMG00000007881) #28	GRM7 (ENSMMMG00000008319) #29	LMCD1 (ENSMMMG00000008370) #30	SSUH2 (ENSMMMG00000008390) #31	CAV3 (ENSMMMG00000008414) #32	OXTR (ENSMMMG00000008417) #33	RAD18 (ENSMMMG00000008426) #34	SRGAP3 (ENSMMMG00000008489) #35	THUMPD3 (ENSMMMG00000008539) #36	SETD5 (ENSMMMG00000008559) #37	LHFPL4 (ENSMMMG00000008628)
Lagomorpha	ANCESTRAL SPECIES	169									ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33
Rabbit	MODERN SPECIES	436					ENSOCUG00000023199	CHL1 (ENSOCUG00000004486) #15	ENSOCUG00000037666	CNTN6 (ENSOCUG00000012763) #16	CNTN4 (ENSOCUG00000011025) #17	ENSOCUG00000015601 #18	TRNT1 (ENSOCUG00000008580) #19	CRBN (ENSOCUG00000025795) #20	LRRN1 (ENSOCUG00000023697) #21	ENSOCUG00000036915	ENSOCUG00000036153	ENSOCUG00000026652 #22	SUMF1 (ENSOCUG00000012348) #23	ITPR1 (ENSOCUG00000012148) #24	ENSOCUG00000015177 #26	ENSOCUG00000014090 #27	EDEM1 (ENSOCUG00000014098) #28	ENSOCUG00000039475 #29	GRM7 (ENSOCUG00000017426) #29	ENSOCUG00000024911	LMCD1 (ENSOCUG00000010136) #30	SSUH2 (ENSOCUG00000014613) #31	CAV3 (ENSOCUG00000005950) #32	RAD18 (ENSOCUG00000000013) #34
Primates	ANCESTRAL SPECIES	1	ENSGT00910000146944	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Lemuriformes	ANCESTRAL SPECIES	73	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29
Mouse lemur	MODERN SPECIES	18	KIAA1191 (ENSMICG00000037293)	ENSMICG00000036088	SIMC1 (ENSMICG00000015305)	ENSMICG00000028441	CPLX2 (ENSMICG00000047802)	HRH2 (ENSMICG00000003318)	ENSMICG00000030242	DRD1 (ENSMICG00000042729)	GRM7 (ENSMICG00000010596) #29	CNTN4 (ENSMICG00000016581) #17	IL5RA (ENSMICG00000046178) #18	TRNT1 (ENSMICG00000016615) #19	CRBN (ENSMICG00000016619) #20	LRRN1 (ENSMICG00000038690) #21	ENSMICG00000030917	ENSMICG00000032203 #22	SUMF1 (ENSMICG00000016631) #23	ITPR1 (ENSMICG00000004656) ##24	BHLHE40 (ENSMICG00000043220) #26	ENSMICG00000029477 #27	EDEM1 (ENSMICG00000000246) #28
Lemuriformes_a	ANCESTRAL SPECIES	122	ENSGT00390000018596.A.a.a	ENSGT00390000005596	ENSGT00940000161421	ENSGT00730000111286	ENSGT00940000160255	ENSGT00730000111360	ENSGT00390000005780.b	ENSGT00390000016970	ENSGT00390000000631	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	700	ENSPSMG00000004944	NBEAL2 (ENSPSMG00000004931)	CCDC12 (ENSPSMG00000004882)	PTH1R (ENSPSMG00000004789)	MYL3 (ENSPSMG00000004712)	ENSPSMG00000004697	ENSPSMG00000004689	ENSPSMG00000004660	ENSPSMG00000004649	PRSS50 (ENSPSMG00000004628)	TMIE (ENSPSMG00000004622)	ALS2CL (ENSPSMG00000004599)	FAM240A (ENSPSMG00000004513)	LRRC2 (ENSPSMG00000004505)	RTP3 (ENSPSMG00000004488)	ENSPSMG00000004468 #22	POMGNT2 (ENSPSMG00000004465)
Greater bamboo lemur	MODERN SPECIES	1330																ENSPSMG00000008526 #22	ENSPSMG00000008535
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	466												ACTR3 (ENSPCOG00000024400)	SLC35F5 (ENSPCOG00000028424)	GPR39 (ENSPCOG00000023485)	LYPD1 (ENSPCOG00000020233)	ENSPCOG00000014180 #22	NCKAP5 (ENSPCOG00000015437)	MGAT5 (ENSPCOG00000019388)	TMEM163 (ENSPCOG00000003562)	ACMSD (ENSPCOG00000009868)	CCNT2 (ENSPCOG00000024166)	MAP3K19 (ENSPCOG00000013448)	RAB3GAP1 (ENSPCOG00000013566)	ENSPCOG00000017303	ZRANB3 (ENSPCOG00000003732)	R3HDM1 (ENSPCOG00000012698)	UBXN4 (ENSPCOG00000023917)	LCT (ENSPCOG00000025001)	MCM6 (ENSPCOG00000019502)	DARS1 (ENSPCOG00000008377)	CXCR4 (ENSPCOG00000024213)
Coquerels sifaka	MODERN SPECIES	78	RPUSD3 (ENSPCOG00000018314)	CIDEC (ENSPCOG00000022675)	JAGN1 (ENSPCOG00000023783)	IL17RE (ENSPCOG00000020006)	IL17RC (ENSPCOG00000021923)	CRELD1 (ENSPCOG00000025122)	PRRT3 (ENSPCOG00000015921)	EMC3 (ENSPCOG00000026029)	FANCD2 (ENSPCOG00000014162)	BRK1 (ENSPCOG00000020671)	VHL (ENSPCOG00000019013)	IRAK2 (ENSPCOG00000021515)	TATDN2 (ENSPCOG00000025647)	GHRL (ENSPCOG00000026754)	SEC13 (ENSPCOG00000008292)	ENSPCOG00000019692 #22	SUMF1 (ENSPCOG00000014210) #23	ITPR1 (ENSPCOG00000024735) #24	BHLHE40 (ENSPCOG00000013862) #26	ARL8B (ENSPCOG00000013027) #27	EDEM1 (ENSPCOG00000022489) #28
Bushbaby	MODERN SPECIES	130	ENSOGAG00000033425	ENSOGAG00000030955	SHQ1 (ENSOGAG00000003898) #11	GXYLT2 (ENSOGAG00000006647) #12	PPP4R2 (ENSOGAG00000011001)	PDZRN3 (ENSOGAG00000031641) #13	CNTN3 (ENSOGAG00000017171) #14	CHL1 (ENSOGAG00000012057) #15	CNTN6 (ENSOGAG00000002731) #16	CNTN4 (ENSOGAG00000007059) #17	IL5RA (ENSOGAG00000007069) #18	CRBN (ENSOGAG00000007077) #20	ENSOGAG00000033945	ENSOGAG00000030861	LRRN1 (ENSOGAG00000027599) #21	ENSOGAG00000024973 #22	SUMF1 (ENSOGAG00000003702) #23	ITPR1 (ENSOGAG00000003704) #24	BHLHE40 (ENSOGAG00000029762) #26	ARL8B (ENSOGAG00000026863) #27	EDEM1 (ENSOGAG00000003714) #28	ENSOGAG00000025402	ENSOGAG00000034686 #29	ENSOGAG00000025792	GRM7 (ENSOGAG00000004355) #29	ENSOGAG00000027930	LMCD1 (ENSOGAG00000009965) #30	SSUH2 (ENSOGAG00000009967) #31	ENSOGAG00000032668	ENSOGAG00000027853	CAV3 (ENSOGAG00000027025) #32
Haplorrhini	ANCESTRAL SPECIES																	ENSGT00940000162663 #22
Tarsier	MODERN SPECIES	4464																ENSTSYG00000026622 #22
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT01000000221469	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Artiodactyla_a	ANCESTRAL SPECIES	18	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT01000000221469	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Artiodactyla_b	ANCESTRAL SPECIES	21	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT01000000221469	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Cetacea	ANCESTRAL SPECIES	7	ENSGT00390000013995.b.a #10	ENSGT00390000006922.m.b.a.d	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT01000000221469	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00390000006922.m.b.a.d	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00390000012652.ab.a.k	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT01000000221469	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00390000006922.m.b.a.d	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00390000012652.ab.a.k	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT01000000221469	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00390000012652.ab.a.k	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000168733	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT01000000221469	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00390000012652.ab.a.k	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000168733	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT01000000221469	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT00940000154194.kb.b	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Narwhal	MODERN SPECIES	310	PPP4R2 (ENSMMNG00015020763)	ENSMMNG00015020797	PDZRN3 (ENSMMNG00015020829) #13	ENSMMNG00015020925	ENSMMNG00015020932	CNTN3 (ENSMMNG00015020954) #14	ENSMMNG00015020993	CHL1 (ENSMMNG00015021112) #15	CNTN6 (ENSMMNG00015021308) #16	ENSMMNG00015021339	CNTN4 (ENSMMNG00015021354) #17	IL5RA (ENSMMNG00015021373) #18	TRNT1 (ENSMMNG00015021404) #19	CRBN (ENSMMNG00015021425) #20	LRRN1 (ENSMMNG00015021441) #21	ENSMMNG00015021455 #22	SUMF1 (ENSMMNG00015021480) #23	ITPR1 (ENSMMNG00015021764) #24	BHLHE40 (ENSMMNG00015021940) #26	EDEM1 (ENSMMNG00015021945) #28	ENSMMNG00015021948	GRM7 (ENSMMNG00015021949) #29	ENSMMNG00015021951	LMCD1 (ENSMMNG00015021953) #30	SSUH2 (ENSMMNG00015021955) #31	CAV3 (ENSMMNG00015021970) #32	OXTR (ENSMMNG00015021973) #33	RAD18 (ENSMMNG00015021977) #34	SRGAP3 (ENSMMNG00015021982) #35	THUMPD3 (ENSMMNG00015021984) #36	SETD5 (ENSMMNG00015009941) #37
Beluga whale	MODERN SPECIES	28	SHQ1 (ENSDLEG00000007662) #11	PPP4R2 (ENSDLEG00000007632) #12	ENSDLEG00000007621	PDZRN3 (ENSDLEG00000007615) #13	ENSDLEG00000007610	CNTN3 (ENSDLEG00000007338) #14	ENSDLEG00000007271	CHL1 (ENSDLEG00000007131) #15	CNTN6 (ENSDLEG00000004824) #16	ENSDLEG00000004457	CNTN4 (ENSDLEG00000004410) #17	IL5RA (ENSDLEG00000004345) #18	TRNT1 (ENSDLEG00000004312) #19	CRBN (ENSDLEG00000004288) #20	LRRN1 (ENSDLEG00000004270) #21	ENSDLEG00000004264 #22	SUMF1 (ENSDLEG00000004213) #23	ITPR1 (ENSDLEG00000003511) #24	BHLHE40 (ENSDLEG00000003345) #26	ARL8B (ENSDLEG00000003337) #27	EDEM1 (ENSDLEG00000003247) #28	ENSDLEG00000003215
Vaquita	MODERN SPECIES	2	GXYLT2 (ENSPSNG00000022011) #12	PPP4R2 (ENSPSNG00000021989)	ENSPSNG00000021970	PDZRN3 (ENSPSNG00000021932) #13	ENSPSNG00000021907	CNTN3 (ENSPSNG00000021869) #14	ENSPSNG00000021840	CHL1 (ENSPSNG00000021694) #15	CNTN6 (ENSPSNG00000021579) #16	ENSPSNG00000021554	CNTN4 (ENSPSNG00000021522) #17	IL5RA (ENSPSNG00000021430) #18	TRNT1 (ENSPSNG00000021385) #19	CRBN (ENSPSNG00000021316) #20	LRRN1 (ENSPSNG00000021271) #21	ENSPSNG00000021260 #22	SUMF1 (ENSPSNG00000021203) #23	ITPR1 (ENSPSNG00000020755) #24	BHLHE40 (ENSPSNG00000020577) #26	ARL8B (ENSPSNG00000020515) #27	EDEM1 (ENSPSNG00000020473) #28	ENSPSNG00000020429	ENSPSNG00000020416	GRM7 (ENSPSNG00000020266) #29	LMCD1 (ENSPSNG00000020193) #30	SSUH2 (ENSPSNG00000020116) #31	CAV3 (ENSPSNG00000020071) #32	OXTR (ENSPSNG00000020047) #33	RAD18 (ENSPSNG00000019957) #34	SRGAP3 (ENSPSNG00000019609) #35	THUMPD3 (ENSPSNG00000019527) #36
Sperm whale	MODERN SPECIES	9	PPP4R2 (ENSPCTG00005017140)	ENSPCTG00005017126	ENSPCTG00005017078	PDZRN3 (ENSPCTG00005016884) #13	ENSPCTG00005016762	CNTN3 (ENSPCTG00005016649) #14	ENSPCTG00005016580	CHL1 (ENSPCTG00005016433) #15	ENSPCTG00005016393	CNTN6 (ENSPCTG00005016124) #16	CNTN4 (ENSPCTG00005011901) #17	IL5RA (ENSPCTG00005011305) #18	TRNT1 (ENSPCTG00005011251) #19	CRBN (ENSPCTG00005011120) #20	LRRN1 (ENSPCTG00005011097) #21	ENSPCTG00005011064 #22	SUMF1 (ENSPCTG00005010949) #23	ENSPCTG00005010893 #24	BHLHE40 (ENSPCTG00005010857) #26	ARL8B (ENSPCTG00005010834) #27	EDEM1 (ENSPCTG00005010722) #28	ENSPCTG00005010694	ENSPCTG00005010665	GRM7 (ENSPCTG00005010372) #29	ENSPCTG00005010301	ENSPCTG00005010267 #32	CAV3 (ENSPCTG00005010229) #32	OXTR (ENSPCTG00005010180) #33	RAD18 (ENSPCTG00005009968) #34	THUMPD3 (ENSPCTG00005009829) #36	SETD5 (ENSPCTG00005009250) #37
Blue whale	MODERN SPECIES	2	SHQ1 (ENSBMSG00010021956) #11	GXYLT2 (ENSBMSG00010021967) #12	PPP4R2 (ENSBMSG00010021970)	PDZRN3 (ENSBMSG00010021981) #13	ENSBMSG00010021985	ENSBMSG00010021989	CNTN3 (ENSBMSG00010021994) #14	ENSBMSG00010022002	CHL1 (ENSBMSG00010022027) #15	CNTN6 (ENSBMSG00010022054) #16	CNTN4 (ENSBMSG00010022067) #17	IL5RA (ENSBMSG00010022077) #18	TRNT1 (ENSBMSG00010022089) #19	CRBN (ENSBMSG00010022093) #20	LRRN1 (ENSBMSG00010022098) #21	ENSBMSG00010022101 #22	SUMF1 (ENSBMSG00010022107) #23	ENSBMSG00010022122 #24	BHLHE40 (ENSBMSG00010022124) #26	ARL8B (ENSBMSG00010022125) #27	EDEM1 (ENSBMSG00010022127) #28	GRM7 (ENSBMSG00010022139) #29	ENSBMSG00010022144	LMCD1 (ENSBMSG00010022145) #30	SSUH2 (ENSBMSG00010022152) #31	CAV3 (ENSBMSG00010022159) #32	OXTR (ENSBMSG00010022161) #33	RAD18 (ENSBMSG00010022168) #34	SRGAP3 (ENSBMSG00010022181) #35	THUMPD3 (ENSBMSG00010022188) #36	SETD5 (ENSBMSG00010022193) #37
Pecora	ANCESTRAL SPECIES	17	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Yarkand deer	MODERN SPECIES	16	GXYLT2 (ENSCHYG00000026357) #12	PPP4R2 (ENSCHYG00000026369)	PDZRN3 (ENSCHYG00000026403) #13	CNTN3 (ENSCHYG00000026470) #14	CHL1 (ENSCHYG00000026559) #15	ENSCHYG00000026610	CNTN6 (ENSCHYG00000026622) #16	ENSCHYG00000026685	ENSCHYG00000026687	CNTN4 (ENSCHYG00000026696) #17	IL5RA (ENSCHYG00000026716) #18	TRNT1 (ENSCHYG00000026731) #19	CRBN (ENSCHYG00000026738) #20	ENSCHYG00000026754	ENSCHYG00000026764	ENSCHYG00000026769 #22	SUMF1 (ENSCHYG00000026779) #23	ITPR1 (ENSCHYG00000026821) #24	BHLHE40 (ENSCHYG00000026844) #26	ARL8B (ENSCHYG00000026850) #27	EDEM1 (ENSCHYG00000026855) #28	ENSCHYG00000026863	GRM7 (ENSCHYG00000026874) #29	LMCD1 (ENSCHYG00000026896) #30	SSUH2 (ENSCHYG00000026901) #31	CAV3 (ENSCHYG00000026911) #32	OXTR (ENSCHYG00000026918) #33	RAD18 (ENSCHYG00000026923) #34	SRGAP3 (ENSCHYG00000013878) #35	THUMPD3 (ENSCHYG00000014272) #36	SETD5 (ENSCHYG00000014430) #37
Percora_a	ANCESTRAL SPECIES	19	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Siberian musk deer	MODERN SPECIES	1217									CNTN6 (ENSMMSG00000023002) #16	ENSMMSG00000023026	CNTN4 (ENSMMSG00000023037) #17	IL5RA (ENSMMSG00000023050) #18	TRNT1 (ENSMMSG00000023102) #19	CRBN (ENSMMSG00000023112) #20	LRRN1 (ENSMMSG00000023149) #21	ENSMMSG00000023154 #22	SUMF1 (ENSMMSG00000023161) #23	ITPR1 (ENSMMSG00000023236) #24	BHLHE40 (ENSMMSG00000023362) #26	ARL8B (ENSMMSG00000023368) #27	EDEM1 (ENSMMSG00000023381) #28	GRM7 (ENSMMSG00000023416) #29	ENSMMSG00000023445	LMCD1 (ENSMMSG00000023464) #30	SSUH2 (ENSMMSG00000023483) #31	CAV3 (ENSMMSG00000023491) #32	OXTR (ENSMMSG00000023495) #33	RAD18 (ENSMMSG00000023505) #34	SRGAP3 (ENSMMSG00000023532) #35	THUMPD3 (ENSMMSG00000023573) #36	SETD5 (ENSMMSG00000023589) #37
Bovidae	ANCESTRAL SPECIES	19	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Caprinae	ANCESTRAL SPECIES	15	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Rambouillet Sheep	MODERN SPECIES	10	PROK2 (ENSOARG00020017771) #8	RYBP (ENSOARG00020017720) #10	SHQ1 (ENSOARG00020017477) #11	GXYLT2 (ENSOARG00020017381) #12	PPP4R2 (ENSOARG00020017177)	PDZRN3 (ENSOARG00020016919) #13	CNTN3 (ENSOARG00020016622) #14	CHL1 (ENSOARG00020015831) #15	CNTN6 (ENSOARG00020015543) #16	ENSOARG00020015490	CNTN4 (ENSOARG00020015064) #17	TRNT1 (ENSOARG00020014826) #19	CRBN (ENSOARG00020014355) #20	ENSOARG00020014311	LRRN1 (ENSOARG00020014291) #21	ENSOARG00020014205 #22	SUMF1 (ENSOARG00020014038) #23	ITPR1 (ENSOARG00020012519) #24	BHLHE40 (ENSOARG00020012417) #26	ARL8B (ENSOARG00020012288) #27	EDEM1 (ENSOARG00020012137) #28	ENSOARG00020012075	GRM7 (ENSOARG00020011716) #29	LMCD1 (ENSOARG00020011551) #30	SSUH2 (ENSOARG00020011381) #31	CAV3 (ENSOARG00020011348) #32	OXTR (ENSOARG00020011329) #33	RAD18 (ENSOARG00020011184) #34	SRGAP3 (ENSOARG00020010228) #35	THUMPD3 (ENSOARG00020025485) #36	SETD5 (ENSOARG00020025409) #37
Goat	MODERN SPECIES	14	RYBP (ENSCHIG00000026041) #10	SHQ1 (ENSCHIG00000012271) #11	GXYLT2 (ENSCHIG00000011713) #12	PPP4R2 (ENSCHIG00000006838)	PDZRN3 (ENSCHIG00000018984) #13	ENSCHIG00000022511	CNTN3 (ENSCHIG00000015485) #14	CHL1 (ENSCHIG00000015409) #15	CNTN6 (ENSCHIG00000024913) #16	CNTN4 (ENSCHIG00000018077) #17	IL5RA (ENSCHIG00000011708) #18	TRNT1 (ENSCHIG00000007030) #19	CRBN (ENSCHIG00000022897) #20	ENSCHIG00000017211	LRRN1 (ENSCHIG00000009563) #21	ENSCHIG00000019739 #22	SUMF1 (ENSCHIG00000026539) #23	ITPR1 (ENSCHIG00000018318) #24	BHLHE40 (ENSCHIG00000014557) #26	ARL8B (ENSCHIG00000011960) #27	EDEM1 (ENSCHIG00000011192) #28	ENSCHIG00000008494 #29	ENSCHIG00000021691	GRM7 (ENSCHIG00000000474) #29	LMCD1 (ENSCHIG00000012706) #30	SSUH2 (ENSCHIG00000021708) #31	CAV3 (ENSCHIG00000010009) #32	OXTR (ENSCHIG00000007774) #33	RAD18 (ENSCHIG00000007965) #34	ENSCHIG00000016941	SRGAP3 (ENSCHIG00000019201) #35
Bovinae	ANCESTRAL SPECIES	16	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Bos	ANCESTRAL SPECIES	16	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT01100000263481.n.a.a.a.b.a.b.a.b.a.a.b.b.b.b	ENSGT00940000160080 #15	ENSGT00940000160606.b #16	ENSGT00940000160606.a.a #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00940000162732	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861.b #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37
Bos_a	ANCESTRAL SPECIES	9	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT01100000263481.n.a.a.a.b.a.b.a.b.a.a.b.b.b.b	ENSGT00940000160080 #15	ENSGT00940000160606.b #16	ENSGT00940000160606.a.a #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00940000162732	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861.b #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37
Wild yak	MODERN SPECIES	787															LRRN1 (ENSBMUG00000014171) #21	ENSBMUG00000014196 #22	ENSBMUG00000014207	SUMF1 (ENSBMUG00000014275) #23	ITPR1 (ENSBMUG00000015280) #24	BHLHE40 (ENSBMUG00000015950) #26	ARL8B (ENSBMUG00000015997) #27	EDEM1 (ENSBMUG00000016011) #28
Domestic yak	MODERN SPECIES	14	ENSBGRG00000022179	CNTN3 (ENSBGRG00000022216) #14	ENSBGRG00000022415	CHL1 (ENSBGRG00000022502) #15	CNTN6 (ENSBGRG00000022913) #16	ENSBGRG00000022946	ENSBGRG00000022956	CNTN4 (ENSBGRG00000023008) #17	IL5RA (ENSBGRG00000023363) #18	TRNT1 (ENSBGRG00000023414) #19	ENSBGRG00000023555	CRBN (ENSBGRG00000023591) #20	LRRN1 (ENSBGRG00000023800) #21	ENSBGRG00000023820	ENSBGRG00000023834	ENSBGRG00000023871 #22	ENSBGRG00000023884	SUMF1 (ENSBGRG00000023916) #23	ITPR1 (ENSBGRG00000024500) #24	BHLHE40 (ENSBGRG00000026121) #26	ARL8B (ENSBGRG00000026129) #27	EDEM1 (ENSBGRG00000026138) #28	GRM7 (ENSBGRG00000026154) #29	ENSBGRG00000026180	ENSBGRG00000026184	LMCD1 (ENSBGRG00000006947) #30	SSUH2 (ENSBGRG00000007163) #31	CAV3 (ENSBGRG00000007247) #32	OXTR (ENSBGRG00000007298) #33	RAD18 (ENSBGRG00000007350) #34	SRGAP3 (ENSBGRG00000007703) #35
Bos_b	ANCESTRAL SPECIES	17	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.b.a.a.b	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT01100000263481.n.a.a.a.b.a.b.a.b.a.a.b.b.b.b	ENSGT00940000160080 #15	ENSGT00940000160606.a.a #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00940000162732	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861.b #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37
Cow	MODERN SPECIES	14	ENSBTAG00000054670	RYBP (ENSBTAG00000022689) #10	SHQ1 (ENSBTAG00000005436) #11	GXYLT2 (ENSBTAG00000020481) #12	PPP4R2 (ENSBTAG00000002147)	PDZRN3 (ENSBTAG00000018644) #13	CNTN3 (ENSBTAG00000007615) #14	CHL1 (ENSBTAG00000002471) #15	ENSBTAG00000006727	CNTN6 (ENSBTAG00000003592) #16	CNTN4 (ENSBTAG00000033225) #17	IL5RA (ENSBTAG00000000273) #18	TRNT1 (ENSBTAG00000019534) #19	CRBN (ENSBTAG00000019536) #20	LRRN1 (ENSBTAG00000001176) #21	SETMAR (ENSBTAG00000018935) #22	ENSBTAG00000034496	SUMF1 (ENSBTAG00000039855) #23	ITPR1 (ENSBTAG00000020455) #24	BHLHE40 (ENSBTAG00000009863) #26	ARL8B (ENSBTAG00000012902) #27	ENSBTAG00000052329 #27	EDEM1 (ENSBTAG00000012904) #28	GRM7 (ENSBTAG00000013047) #29	LMCD1 (ENSBTAG00000005431) #30	SSUH2 (ENSBTAG00000005433) #31	CAV3 (ENSBTAG00000022699) #32	OXTR (ENSBTAG00000019772) #33	RAD18 (ENSBTAG00000012142) #34	SRGAP3 (ENSBTAG00000004685) #35	THUMPD3 (ENSBTAG00000003112) #36
Hybrid Bos Indicus	MODERN SPECIES	14	GXYLT2 (ENSBIXG00005031365) #12	PPP4R2 (ENSBIXG00005031369)	PDZRN3 (ENSBIXG00005031380) #13	CNTN3 (ENSBIXG00005031394) #14	ENSBIXG00005031401	CHL1 (ENSBIXG00005031410) #15	ENSBIXG00005031428	CNTN6 (ENSBIXG00005031434) #16	CNTN4 (ENSBIXG00005031442) #17	IL5RA (ENSBIXG00005031445) #18	TRNT1 (ENSBIXG00005031446) #19	CRBN (ENSBIXG00005031447) #20	LRRN1 (ENSBIXG00005031456) #21	ENSBIXG00005031458	SUMF1 (ENSBIXG00005031466) #23	ENSBIXG00005031470 #22	ENSBIXG00005031471	ITPR1 (ENSBIXG00005031482) #24	BHLHE40 (ENSBIXG00005031493) #26	ARL8B (ENSBIXG00005031495) #27	EDEM1 (ENSBIXG00005001970) #28	ENSBIXG00005029056	GRM7 (ENSBIXG00005028996) #29	LMCD1 (ENSBIXG00005005060) #30	SSUH2 (ENSBIXG00005028895) #31	CAV3 (ENSBIXG00005002263) #32	OXTR (ENSBIXG00005028862) #33	RAD18 (ENSBIXG00005002314) #34	SRGAP3 (ENSBIXG00005005347) #35	THUMPD3 (ENSBIXG00005028624) #36	SETD5 (ENSBIXG00005028549) #37
American bison	MODERN SPECIES	3113													TRNT1 (ENSBBBG00000006767) #19	CRBN (ENSBBBG00000014614) #20	LRRN1 (ENSBBBG00000007132) #21	ENSBBBG00000014591 #22	SUMF1 (ENSBBBG00000014575) #23	ITPR1 (ENSBBBG00000003374) #24	BHLHE40 (ENSBBBG00000001529) #26	ARL8B (ENSBBBG00000013693) #27	EDEM1 (ENSBBBG00000006878) #28
Camelidae	ANCESTRAL SPECIES	7	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Arabian camel	MODERN SPECIES	8	RYBP (ENSCDRG00005005642) #10	SHQ1 (ENSCDRG00005005675) #11	GXYLT2 (ENSCDRG00005005730) #12	PPP4R2 (ENSCDRG00005005747)	PDZRN3 (ENSCDRG00005005789) #13	CNTN3 (ENSCDRG00005005902) #14	ENSCDRG00005005931	CHL1 (ENSCDRG00005005966) #15	CNTN6 (ENSCDRG00005006079) #16	ENSCDRG00005006107	CNTN4 (ENSCDRG00005006128) #17	TRNT1 (ENSCDRG00005006181) #19	IL5RA (ENSCDRG00005006219) #18	CRBN (ENSCDRG00005006474) #20	LRRN1 (ENSCDRG00005006616) #21	ENSCDRG00005006638 #22	ENSCDRG00005006687	SUMF1 (ENSCDRG00005006754) #23	ITPR1 (ENSCDRG00005006971) #24	BHLHE40 (ENSCDRG00005007592) #26	ARL8B (ENSCDRG00005007624) #27	EDEM1 (ENSCDRG00005007706) #28	ENSCDRG00005007733	GRM7 (ENSCDRG00005007785) #29	LMCD1 (ENSCDRG00005008646) #30	SSUH2 (ENSCDRG00005008739) #31	CAV3 (ENSCDRG00005008785) #32	OXTR (ENSCDRG00005008802) #33	RAD18 (ENSCDRG00005008867) #34	SRGAP3 (ENSCDRG00005009310) #35	THUMPD3 (ENSCDRG00005009741) #36
Suina	ANCESTRAL SPECIES	1	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT01000000221469	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Pig	MODERN SPECIES	4	ENSSSCG00000047664	CNTN3 (ENSSSCG00000011522) #14	ENSSSCG00000048746	ENSSSCG00000058117	ENSSSCG00000048446	ENSSSCG00000050663	CHL1 (ENSSSCG00000011524) #15	CNTN6 (ENSSSCG00000038152) #16	ENSSSCG00000050505	CNTN4 (ENSSSCG00000011527) #17	IL5RA (ENSSSCG00000011528) #18	TRNT1 (ENSSSCG00000011529) #19	CRBN (ENSSSCG00000011530) #20	ENSSSCG00000041465	LRRN1 (ENSSSCG00000023806) #21	ENSSSCG00000011531 #22	SUMF1 (ENSSSCG00000011532) #23	ITPR1 (ENSSSCG00000023437) #24	BHLHE40 (ENSSSCG00000036136) #26	ARL8B (ENSSSCG00000011535) #27	ENSSSCG00000044623	EDEM1 (ENSSSCG00000034197) #28	GRM7 (ENSSSCG00000023891) #29	LMCD1 (ENSSSCG00000011538) #30	SSUH2 (ENSSSCG00000023082) #31	CAV3 (ENSSSCG00000056902) #32	OXTR (ENSSSCG00000021585) #33	RAD18 (ENSSSCG00000026158) #34	SRGAP3 (ENSSSCG00000033624) #35	THUMPD3 (ENSSSCG00000011542) #36	SETD5 (ENSSSCG00000011540) #37
Chacoan peccary	MODERN SPECIES	950	PROK2 (ENSCWAG00000020863) #8	RYBP (ENSCWAG00000020884) #10	SHQ1 (ENSCWAG00000020894) #11	GXYLT2 (ENSCWAG00000020910) #12	PPP4R2 (ENSCWAG00000020926)	PDZRN3 (ENSCWAG00000020942) #13	CNTN3 (ENSCWAG00000020972) #14	CHL1 (ENSCWAG00000021043) #15	CNTN6 (ENSCWAG00000021190) #16	ENSCWAG00000021205	CNTN4 (ENSCWAG00000021224) #17	IL5RA (ENSCWAG00000021262) #18	TRNT1 (ENSCWAG00000021303) #19	CRBN (ENSCWAG00000021315) #20	LRRN1 (ENSCWAG00000021333) #21	ENSCWAG00000021337 #22	SUMF1 (ENSCWAG00000021351) #23	ITPR1 (ENSCWAG00000021394) #24	BHLHE40 (ENSCWAG00000021441) #26	ARL8B (ENSCWAG00000021449) #27	EDEM1 (ENSCWAG00000021462) #28	GRM7 (ENSCWAG00000021475) #29	LMCD1 (ENSCWAG00000021516) #30	ENSCWAG00000021523	SSUH2 (ENSCWAG00000021528) #31	CAV3 (ENSCWAG00000021533) #32	OXTR (ENSCWAG00000021536) #33	RAD18 (ENSCWAG00000021543) #34	SRGAP3 (ENSCWAG00000021560) #35	THUMPD3 (ENSCWAG00000021592) #36	SETD5 (ENSCWAG00000021607) #37
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Carnivora	ANCESTRAL SPECIES	6	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Caniformia	ANCESTRAL SPECIES	4	ENSGT00910000146944	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606.d #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00910000146944	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606.d #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Ursidae	ANCESTRAL SPECIES	11	ENSGT00390000013995.b.a #10	ENSGT00940000173944	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00390000000263.fb.a	ENSGT00940000160080.b #15	ENSGT00940000160606.d #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Ursus	ANCESTRAL SPECIES	43																ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E.e #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Polar bear	MODERN SPECIES	210														LRRN1 (ENSUMAG00000024226) #21	ENSUMAG00000024224	ENSUMAG00000024223 #22	SUMF1 (ENSUMAG00000024222) #23	ITPR1 (ENSUMAG00000020523) #24	BHLHE40 (ENSUMAG00000019582) #26	ARL8B (ENSUMAG00000019574) #27	EDEM1 (ENSUMAG00000019393) #28	ENSUMAG00000019361	GRM7 (ENSUMAG00000019342) #29	LMCD1 (ENSUMAG00000019308) #30	SSUH2 (ENSUMAG00000019301) #31	CAV3 (ENSUMAG00000019292) #32	ENSUMAG00000019289 #33	RAD18 (ENSUMAG00000019279) #34	ENSUMAG00000019260 #35	THUMPD3 (ENSUMAG00000019241) #36	SETD5 (ENSUMAG00000019048) #37
American black bear	MODERN SPECIES	1096																ENSUAMG00000024275 #22	SUMF1 (ENSUAMG00000024276) #23	ENSUAMG00000024337 #24
Giant Panda	MODERN SPECIES	14	RYBP (ENSAMEG00000015131) #10	ENSAMEG00000015139	SHQ1 (ENSAMEG00000015140) #11	GXYLT2 (ENSAMEG00000015150) #12	PPP4R2 (ENSAMEG00000015164)	PDZRN3 (ENSAMEG00000025975) #13	ENSAMEG00000011395 #14	ENSAMEG00000023576	ENSAMEG00000013402 #15	CNTN6 (ENSAMEG00000014259) #16	CNTN4 (ENSAMEG00000014387) #17	IL5RA (ENSAMEG00000014490) #18	TRNT1 (ENSAMEG00000014520) #19	CRBN (ENSAMEG00000014541) #20	LRRN1 (ENSAMEG00000018835) #21	ENSAMEG00000015893 #22	SUMF1 (ENSAMEG00000015897) #23	ITPR1 (ENSAMEG00000015900) #24	BHLHE40 (ENSAMEG00000016060) #26	ARL8B (ENSAMEG00000026834) #27	EDEM1 (ENSAMEG00000016099) #28	ENSAMEG00000028093	GRM7 (ENSAMEG00000027634) #29	LMCD1 (ENSAMEG00000012319) #30	SSUH2 (ENSAMEG00000012342) #31	CAV3 (ENSAMEG00000026850) #32	RAD18 (ENSAMEG00000012375) #34	SRGAP3 (ENSAMEG00000012398) #35	THUMPD3 (ENSAMEG00000011321) #36	SETD5 (ENSAMEG00000011307) #37	LHFPL4 (ENSAMEG00000029596)
Mustelinae	ANCESTRAL SPECIES	18	ENSGT00910000146944	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606.d #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b	ENSGT00390000018852.d
American mink	MODERN SPECIES	259																C9JHK2 (ENSNVIG00000014801) #22	SUMF1 (ENSNVIG00000014740) #23	ENSNVIG00000014725 #25	ITPR1 (ENSNVIG00000013256) #24	BHLHE40 (ENSNVIG00000013166) #26	ARL8B (ENSNVIG00000013147) #27	EDEM1 (ENSNVIG00000013114) #28
Ferret	MODERN SPECIES	163	PPP4R2 (ENSMPUG00000017008)	PDZRN3 (ENSMPUG00000017009) #13	ENSMPUG00000017010	CNTN3 (ENSMPUG00000017011) #14	ENSMPUG00000020109	ENSMPUG00000017012	CHL1 (ENSMPUG00000017013) #15	ENSMPUG00000020110	CNTN6 (ENSMPUG00000017014) #16	CNTN4 (ENSMPUG00000017015) #17	IL5RA (ENSMPUG00000017016) #18	TRNT1 (ENSMPUG00000017017) #19	CRBN (ENSMPUG00000017018) #20	LRRN1 (ENSMPUG00000020111) #21	ENSMPUG00000017019	ENSMPUG00000017021 #22	SUMF1 (ENSMPUG00000017022) #23	ENSMPUG00000017028	ITPR1 (ENSMPUG00000017024) #24	BHLHE40 (ENSMPUG00000017029) #26	ENSMPUG00000017030	ARL8B (ENSMPUG00000017035) #27	EDEM1 (ENSMPUG00000017042) #28	ENSMPUG00000017055	ENSMPUG00000020112	GRM7 (ENSMPUG00000017057) #29	ENSMPUG00000020113	LMCD1 (ENSMPUG00000017058) #30	SSUH2 (ENSMPUG00000017059) #31	CAV3 (ENSMPUG00000017061) #32	OXTR (ENSMPUG00000017062) #33
Canidae	ANCESTRAL SPECIES		ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606.d #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606.d #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00550000074855.u.a.a.a.a.b	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37
Dog	MODERN SPECIES	12	SHQ1 (ENSCAFG00845007261) #11	GXYLT2 (ENSCAFG00845007149) #12	PPP4R2 (ENSCAFG00845007022)	PDZRN3 (ENSCAFG00845006843) #13	CNTN3 (ENSCAFG00845006575) #14	ENSCAFG00845006474	ENSCAFG00845006445	ENSCAFG00845006097 #15	CNTN6 (ENSCAFG00845005936) #16	CNTN4 (ENSCAFG00845012710) #17	IL5RA (ENSCAFG00845012603) #18	TRNT1 (ENSCAFG00845012496) #19	CRBN (ENSCAFG00845012410) #20	ENSCAFG00845012385	LRRN1 (ENSCAFG00845012344) #21	SETMAR (ENSCAFG00845012243) #22	ENSCAFG00845012212	SUMF1 (ENSCAFG00845012121) #23	ITPR1 (ENSCAFG00845011583) #24	BHLHE40 (ENSCAFG00845011295) #26	ARL8B (ENSCAFG00845011245) #27	EDEM1 (ENSCAFG00845011142) #28	ENSCAFG00845011042	GRM7 (ENSCAFG00845010858) #29	LMCD1 (ENSCAFG00845010761) #30	SSUH2 (ENSCAFG00845010670) #31	PSMA1 (ENSCAFG00845010623)	CAV3 (ENSCAFG00845010595) #32	OXTR (ENSCAFG00845010546) #33	RAD18 (ENSCAFG00845010415) #34	SRGAP3 (ENSCAFG00845010252) #35
Dingo	MODERN SPECIES	236						PDZRN3 (ENSCAFG00020015173) #13	CNTN3 (ENSCAFG00020015151) #14	CHL1 (ENSCAFG00020015069) #15	ENSCAFG00020015018 #16	ENSCAFG00020015005	CNTN4 (ENSCAFG00020014776) #17	IL5RA (ENSCAFG00020014747) #18	TRNT1 (ENSCAFG00020014746) #19	CRBN (ENSCAFG00020014744) #20	LRRN1 (ENSCAFG00020014742) #21	ENSCAFG00020014740 #22	SUMF1 (ENSCAFG00020014738) #23	ITPR1 (ENSCAFG00020009780) #24	BHLHE40 (ENSCAFG00020009373) #26	ARL8B (ENSCAFG00020009368) #27	EDEM1 (ENSCAFG00020009305) #28	ENSCAFG00020009301	ENSCAFG00020009294 #29	GRM7 (ENSCAFG00020009277) #29	LMCD1 (ENSCAFG00020009259) #30	SSUH2 (ENSCAFG00020009247) #31	ENSCAFG00020009244	CAV3 (ENSCAFG00020009240) #32	OXTR (ENSCAFG00020009232) #33	ENSCAFG00020009230	RAD18 (ENSCAFG00020009228) #34
Red fox	MODERN SPECIES	5	SHQ1 (ENSVVUG00000013906) #11	GXYLT2 (ENSVVUG00000013899) #12	PPP4R2 (ENSVVUG00000013896)	ENSVVUG00000013883	ENSVVUG00000013879 #13	CNTN3 (ENSVVUG00000013866) #14	ENSVVUG00000013836	CHL1 (ENSVVUG00000013809) #15	CNTN6 (ENSVVUG00000013018) #16	CNTN4 (ENSVVUG00000012913) #17	IL5RA (ENSVVUG00000012836) #18	TRNT1 (ENSVVUG00000012810) #19	CRBN (ENSVVUG00000012661) #20	LRRN1 (ENSVVUG00000012640) #21	ENSVVUG00000012624	ENSVVUG00000012619 #22	SUMF1 (ENSVVUG00000012610) #23	ENSVVUG00000011191 #24	ENSVVUG00000009857 #24	BHLHE40 (ENSVVUG00000009777) #26	ARL8B (ENSVVUG00000009760) #27	EDEM1 (ENSVVUG00000009660) #28	ENSVVUG00000009583 ##29
Felidae	ANCESTRAL SPECIES	17	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00390000008694.b.b.d	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Panthera	ANCESTRAL SPECIES	1	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00390000008694.b.b.d	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Tiger	MODERN SPECIES	83																ENSPTIG00000011266 #22	SUMF1 (ENSPTIG00000011135) #23	ITPR1 (ENSPTIG00000010372) #24	BHLHE40 (ENSPTIG00000010250) #26	ARL8B (ENSPTIG00000010204) #27	EDEM1 (ENSPTIG00000010198) #28	ENSPTIG00000010162
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
lion	MODERN SPECIES	2	RYBP (ENSPLOG00000002820) #10	SHQ1 (ENSPLOG00000002849) #11	GXYLT2 (ENSPLOG00000002888) #12	PPP4R2 (ENSPLOG00000002914)	PDZRN3 (ENSPLOG00000003033) #13	CNTN3 (ENSPLOG00000003083) #14	CHL1 (ENSPLOG00000003228) #15	ENSPLOG00000003473	CNTN6 (ENSPLOG00000003490) #16	ENSPLOG00000003587	CNTN4 (ENSPLOG00000003617) #17	IL5RA (ENSPLOG00000003728) #18	TRNT1 (ENSPLOG00000003771) #19	CRBN (ENSPLOG00000003808) #20	LRRN1 (ENSPLOG00000003838) #21	ENSPLOG00000003853 #22	SUMF1 (ENSPLOG00000003874) #23	ITPR1 (ENSPLOG00000003942) #24	BHLHE40 (ENSPLOG00000004020) #26	ARL8B (ENSPLOG00000004035) #27	EDEM1 (ENSPLOG00000004057) #28	GRM7 (ENSPLOG00000004096) #29	LMCD1 (ENSPLOG00000004127) #30	SSUH2 (ENSPLOG00000004153) #31	CAV3 (ENSPLOG00000004164) #32	OXTR (ENSPLOG00000004169) #33	RAD18 (ENSPLOG00000004183) #34	SRGAP3 (ENSPLOG00000004214) #35	THUMPD3 (ENSPLOG00000004248) #36	SETD5 (ENSPLOG00000004271) #37	MTMR14 (ENSPLOG00000004371)
leopard	MODERN SPECIES	119										CNTN6 (ENSPPRG00000002135) #16	CNTN4 (ENSPPRG00000002020) #17	IL5RA (ENSPPRG00000001745) #18	TRNT1 (ENSPPRG00000001327) #19	CRBN (ENSPPRG00000001273) #20	LRRN1 (ENSPPRG00000011605) #21	ENSPPRG00000001161 #22	SUMF1 (ENSPPRG00000001097) #23	ITPR1 (ENSPPRG00000000604) #24	BHLHE40 (ENSPPRG00000022800) #26	ARL8B (ENSPPRG00000022808) #27	EDEM1 (ENSPPRG00000022849) #28	ENSPPRG00000022876	ENSPPRG00000022899
Cat	MODERN SPECIES	1	SHQ1 (ENSFCAG00000012781) #11	GXYLT2 (ENSFCAG00000011005) #12	PPP4R2 (ENSFCAG00000029481)	PDZRN3 (ENSFCAG00000040417) #13	CNTN3 (ENSFCAG00000012778) #14	ENSFCAG00000005652	CHL1 (ENSFCAG00000011105) #15	ENSFCAG00000034166	CNTN6 (ENSFCAG00000015456) #16	ENSFCAG00000052641	CNTN4 (ENSFCAG00000000649) #17	IL5RA (ENSFCAG00000000652) #18	TRNT1 (ENSFCAG00000026805) #19	CRBN (ENSFCAG00000026512) #20	LRRN1 (ENSFCAG00000029530) #21	ENSFCAG00000037787 #22	SUMF1 (ENSFCAG00000011512) #23	ITPR1 (ENSFCAG00000002477) #24	BHLHE40 (ENSFCAG00000034238) #26	ARL8B (ENSFCAG00000000736) #27	EDEM1 (ENSFCAG00000000737) #28	ENSFCAG00000029757	GRM7 (ENSFCAG00000029003) #29	LMCD1 (ENSFCAG00000014723) #30	SSUH2 (ENSFCAG00000014724) #31	CAV3 (ENSFCAG00000035688) #32	OXTR (ENSFCAG00000014726) #33	RAD18 (ENSFCAG00000025747) #34	SRGAP3 (ENSFCAG00000008390) #35	THUMPD3 (ENSFCAG00000006171) #36	SETD5 (ENSFCAG00000005610) #37
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Chiroptera	ANCESTRAL SPECIES	88							ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28
Microchiroptera	ANCESTRAL SPECIES	16							ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030	ENSGT00940000157494	ENSGT00940000157262	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711
Greater horseshoe bat	MODERN SPECIES	8					PDZRN3 (ENSRFEG00010011914) #13	ENSRFEG00010011970	CNTN3 (ENSRFEG00010012552) #14	CHL1 (ENSRFEG00010012636) #15	CNTN6 (ENSRFEG00010012827) #16	CNTN4 (ENSRFEG00010012870) #17	IL5RA (ENSRFEG00010012950) #18	TRNT1 (ENSRFEG00010013326) #19	CRBN (ENSRFEG00010013551) #20	LRRN1 (ENSRFEG00010013770) #21	SUMF1 (ENSRFEG00010013803) #23	ENSRFEG00010014043 #22	ITPR1 (ENSRFEG00010014134) #24	BHLHE40 (ENSRFEG00010014606) #26	ARL8B (ENSRFEG00010014676) #27	EDEM1 (ENSRFEG00010014776) #28	TWF2 (ENSRFEG00010014959)	TLR9 (ENSRFEG00010015047)	ALAS1 (ENSRFEG00010015102)	POC1A (ENSRFEG00010015173)	DUSP7 (ENSRFEG00010015305)	ENSRFEG00010015354	ACY1 (ENSRFEG00010015466)	ABHD14A (ENSRFEG00010015875)	ABHD14B (ENSRFEG00010015992)	PCBP4 (ENSRFEG00010016071)	ENSRFEG00010016188
Microbat	MODERN SPECIES	1601															LRRN1 (ENSMLUG00000003543) #21	ENSMLUG00000027733 #22	SUMF1 (ENSMLUG00000015762) #23	ENSMLUG00000030685	ENSMLUG00000007717 ##24
Equus	ANCESTRAL SPECIES	5	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT01090000263390	ENSGT00940000157446 #37
Horse	MODERN SPECIES	7	GPR27 (ENSECAG00000032664)	RYBP (ENSECAG00000000266) #10	SHQ1 (ENSECAG00000015673) #11	GXYLT2 (ENSECAG00000008483) #12	PPP4R2 (ENSECAG00000000689)	PDZRN3 (ENSECAG00000014864) #13	CNTN3 (ENSECAG00000013575) #14	CHL1 (ENSECAG00000024808) #15	ENSECAG00000027842	CNTN6 (ENSECAG00000015975) #16	CNTN4 (ENSECAG00000009769) #17	IL5RA (ENSECAG00000022503) #18	TRNT1 (ENSECAG00000014420) #19	CRBN (ENSECAG00000015422) #20	LRRN1 (ENSECAG00000002874) #21	ENSECAG00000011514 #22	SUMF1 (ENSECAG00000020242) #23	ITPR1 (ENSECAG00000020933) #24	BHLHE40 (ENSECAG00000015069) #26	ARL8B (ENSECAG00000013084) #27	EDEM1 (ENSECAG00000023369) #28	ENSECAG00000056332	ENSECAG00000048581	GRM7 (ENSECAG00000016171) #29	LMCD1 (ENSECAG00000010791) #30	SSUH2 (ENSECAG00000039589) #31	CAV3 (ENSECAG00000020701) #32	OXTR (ENSECAG00000017844) #33	ENSECAG00000056983	RAD18 (ENSECAG00000010746) #34	SRGAP3 (ENSECAG00000010118) #35
Donkey	MODERN SPECIES	13	PROK2 (ENSEASG00005033363) #8	RYBP (ENSEASG00005029789) #10	SHQ1 (ENSEASG00005002237) #11	GXYLT2 (ENSEASG00005002247) #12	PPP4R2 (ENSEASG00005002252)	PDZRN3 (ENSEASG00005002263) #13	ENSEASG00005002280 #14	ENSEASG00005002560 #15	ENSEASG00005032406	CNTN6 (ENSEASG00005003549) #16	CNTN4 (ENSEASG00005003558) #17	IL5RA (ENSEASG00005003564) #18	TRNT1 (ENSEASG00005003577) #19	CRBN (ENSEASG00005003584) #20	LRRN1 (ENSEASG00005003592) #21	ENSEASG00005032131 #22	SUMF1 (ENSEASG00005003601) #23	ITPR1 (ENSEASG00005004852) #24	BHLHE40 (ENSEASG00005034761) #26	ARL8B (ENSEASG00005023967) #27	EDEM1 (ENSEASG00005013107) #28	ENSEASG00005031999	GRM7 (ENSEASG00005013291) #29	ENSEASG00005013295	LMCD1 (ENSEASG00005013302) #30	SSUH2 (ENSEASG00005013304) #31	CAV3 (ENSEASG00005033820) #32	OXTR (ENSEASG00005013312) #33	RAD18 (ENSEASG00005013316) #34	SRGAP3 (ENSEASG00005013321) #35	THUMPD3 (ENSEASG00005013327) #36
Atlantogenata	ANCESTRAL SPECIES	34	ENSGT00890000139436.A.a	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Afrotheria	ANCESTRAL SPECIES	32	ENSGT00890000139436.A.a	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Afrotheria_a	ANCESTRAL SPECIES	32	ENSGT00890000139436.A.a	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Elephant	MODERN SPECIES	49	RYBP (ENSLAFG00000003133) #10	ENSLAFG00000017601 #11	GXYLT2 (ENSLAFG00000017357) #12	PPP4R2 (ENSLAFG00000000513)	PDZRN3 (ENSLAFG00000014734) #13	ENSLAFG00000026536	ENSLAFG00000031602	CNTN3 (ENSLAFG00000008082) #14	CHL1 (ENSLAFG00000000179) #15	CNTN6 (ENSLAFG00000008927) #16	CNTN4 (ENSLAFG00000011631) #17	IL5RA (ENSLAFG00000011644) #18	TRNT1 (ENSLAFG00000023191) #19	CRBN (ENSLAFG00000017627) #20	LRRN1 (ENSLAFG00000010287) #21	ENSLAFG00000026765 #22	SUMF1 (ENSLAFG00000010276) #23	ITPR1 (ENSLAFG00000002957) #24	BHLHE40 (ENSLAFG00000004896) #26	ARL8B (ENSLAFG00000007764) #27	EDEM1 (ENSLAFG00000007772) #28	GRM7 (ENSLAFG00000002333) #29	LMCD1 (ENSLAFG00000015653) #30	SSUH2 (ENSLAFG00000010680) #31	CAV3 (ENSLAFG00000030253) #32	OXTR (ENSLAFG00000005307) #33	RAD18 (ENSLAFG00000004667) #34	SRGAP3 (ENSLAFG00000005453) #35	THUMPD3 (ENSLAFG00000005103) #36	SETD5 (ENSLAFG00000008849) #37	LHFPL4 (ENSLAFG00000008855)
Xenarthra	ANCESTRAL SPECIES	434											ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28
Armadillo	MODERN SPECIES	4527										CNTN4 (ENSDNOG00000008784) #17	IL5RA (ENSDNOG00000008818) #18	TRNT1 (ENSDNOG00000008837) #19	CRBN (ENSDNOG00000008855) #20	LRRN1 (ENSDNOG00000013430) #21	ENSDNOG00000047048	ENSDNOG00000037330 #22	SUMF1 (ENSDNOG00000004539) #23	ITPR1 (ENSDNOG00000000458) #24	BHLHE40 (ENSDNOG00000035717) #26	ARL8B (ENSDNOG00000046163) #27	ENSDNOG00000043504 #28	ENSDNOG00000032647 #28	ENSDNOG00000043736
Marsupialia	ANCESTRAL SPECIES	14	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Marsupialia_b	ANCESTRAL SPECIES	14	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Diprotodontia	ANCESTRAL SPECIES	12	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b	ENSGT00390000018852
Diprotodontia_a	ANCESTRAL SPECIES	10	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT00940000160159.b	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00940000157446 #37	ENSGT00990000203541.a.b
Common wonbat	MODERN SPECIES	1012	PPP4R2 (ENSVURG00010008448)	ENSVURG00010008462	PDZRN3 (ENSVURG00010008505) #13	ENSVURG00010008548	CNTN3 (ENSVURG00010008586) #14	CHL1 (ENSVURG00010008642) #15	ENSVURG00010008727	CNTN6 (ENSVURG00010008756) #16	ENSVURG00010008843	ENSVURG00010008854	CNTN4 (ENSVURG00010008887) #17	IL5RA (ENSVURG00010008982) #18	TRNT1 (ENSVURG00010008997) #19	CRBN (ENSVURG00010009020) #20	LRRN1 (ENSVURG00010009042) #21	ENSVURG00010009062 #22	SUMF1 (ENSVURG00010009079) #23	ITPR1 (ENSVURG00010009114) #24	BHLHE40 (ENSVURG00010009249) #26	ARL8B (ENSVURG00010009259) #27	EDEM1 (ENSVURG00010009274) #28	ENSVURG00010009302	ENSVURG00010009325 #29	GRM7 (ENSVURG00010009382) #29	ENSVURG00010009435	ENSVURG00010009440	LMCD1 (ENSVURG00010009459) #30	SSUH2 (ENSVURG00010009470) #31	CAV3 (ENSVURG00010009478) #32	OXTR (ENSVURG00010009486) #33	RAD18 (ENSVURG00010009498) #34
koala	MODERN SPECIES	180									ENSPCIG00000023089 #16	CNTN4 (ENSPCIG00000000132) #17	IL5RA (ENSPCIG00000030437) #18	TRNT1 (ENSPCIG00000030436) #19	CRBN (ENSPCIG00000030435) #20	ENSPCIG00000015780	LRRN1 (ENSPCIG00000015777) #21	ENSPCIG00000027892 #22	SUMF1 (ENSPCIG00000027894) #23	ITPR1 (ENSPCIG00000027965) #24	BHLHE40 (ENSPCIG00000035444) #26	ARL8B (ENSPCIG00000028258) #27	EDEM1 (ENSPCIG00000028260) #28
Tasmanian devil	MODERN SPECIES		GPR27 (ENSSHAG00000022511)	ENSSHAG00000031144 #8	ENSSHAG00000013359 #10	SHQ1 (ENSSHAG00000015077) #11	GXYLT2 (ENSSHAG00000015594) #12	PPP4R2 (ENSSHAG00000015837)	PDZRN3 (ENSSHAG00000016709) #13	ENSSHAG00000010121 #14	ENSSHAG00000010125 #15	CNTN6 (ENSSHAG00000015764) #16	CNTN4 (ENSSHAG00000018520) #17	IL5RA (ENSSHAG00000018837) #18	TRNT1 (ENSSHAG00000018861) #19	CRBN (ENSSHAG00000029768) #20	LRRN1 (ENSSHAG00000027597) #21	ENSSHAG00000030072 #22	SUMF1 (ENSSHAG00000022459) #23	ENSSHAG00000012663 #24	BHLHE40 (ENSSHAG00000023494) #26	ARL8B (ENSSHAG00000031008) #27	EDEM1 (ENSSHAG00000005432) #28	ENSSHAG00000026569	GRM7 (ENSSHAG00000024593) #29	LMCD1 (ENSSHAG00000008779) #30	SSUH2 (ENSSHAG00000010057) #31	CAV3 (ENSSHAG00000021107) #32	OXTR (ENSSHAG00000011374) #33	RAD18 (ENSSHAG00000012472) #34	SRGAP3 (ENSSHAG00000012943) #35	THUMPD3 (ENSSHAG00000014467) #36	SETD5 (ENSSHAG00000014669) #37
Opossum	MODERN SPECIES	5	PPP4R2 (ENSMODG00000003940)	PDZRN3 (ENSMODG00000003959) #13	CNTN3 (ENSMODG00000003991) #14	ENSMODG00000049888	ENSMODG00000046603	CHL1 (ENSMODG00000004153) #15	CNTN6 (ENSMODG00000004198) #16	ENSMODG00000051590	ENSMODG00000048583	ENSMODG00000028686	CNTN4 (ENSMODG00000004323) #17	ENSMODG00000004351 #18	TRNT1 (ENSMODG00000004368) #19	CRBN (ENSMODG00000004403) #20	LRRN1 (ENSMODG00000024416) #21	ENSMODG00000004437 #22	SUMF1 (ENSMODG00000045035) #23	ITPR1 (ENSMODG00000004495) #24	BHLHE40 (ENSMODG00000004516) #26	ARL8B (ENSMODG00000004530) #27	EDEM1 (ENSMODG00000004556) #28	ENSMODG00000042609	ENSMODG00000004592 #29	GRM7 (ENSMODG00000004605) #29	LMCD1 (ENSMODG00000004651) #30	SSUH2 (ENSMODG00000004659) #31	ENSMODG00000045708 #32	OXTR (ENSMODG00000004673) #33	RAD18 (ENSMODG00000004679) #34	SRGAP3 (ENSMODG00000004712) #35	THUMPD3 (ENSMODG00000004715) #36
Platypus	MODERN SPECIES	84	IARS1 (ENSOANG00000000112)	ENSOANG00000015176	SLC6A11 (ENSOANG00000039168)	SLC6A1 (ENSOANG00000015178)	HRH1 (ENSOANG00000000983)	ATG7 (ENSOANG00000002182)	VGLL4 (ENSOANG00000014429)	CNTN3 (ENSOANG00000021376) #14	CHL1 (ENSOANG00000003342) #15	CNTN6 (ENSOANG00000012175) #16	CNTN4 (ENSOANG00000011370) #17	IL5RA (ENSOANG00000015382) #18	TRNT1 (ENSOANG00000007514) #19	CRBN (ENSOANG00000007513) #20	LRRN1 (ENSOANG00000010239) #21	ENSOANG00000003769 #22	SUMF1 (ENSOANG00000019838) #23	ITPR1 (ENSOANG00000003765) #24	BHLHE40 (ENSOANG00000038785) #26	ARL8B (ENSOANG00000051209) #27	EDEM1 (ENSOANG00000003763) #28	ENSOANG00000012380 #29	ENSOANG00000002636	ENSOANG00000013668 #29	ENSOANG00000041232	LMCD1 (ENSOANG00000041669) #30	SSUH2 (ENSOANG00000011551) #31	CAV3 (ENSOANG00000044650) #32	OXTR (ENSOANG00000007720) #33	ENSOANG00000046474	SRGAP3 (ENSOANG00000014483) #35
Sauria	ANCESTRAL SPECIES	13	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT01030000237821	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873.l	ENSGT00940000163873.k	ENSGT00390000003937	ENSGT00940000155311.C	ENSGT00940000160765	ENSGT00940000155445
Lepidosauria	ANCESTRAL SPECIES	14	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT01030000237821	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873.l	ENSGT00940000163873.k	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35
Episquamata	ANCESTRAL SPECIES	4	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT01030000237821	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873.l	ENSGT00940000163873.k	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00940000155865	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT01030000237821	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873.l	ENSGT00940000163873.k	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT01030000235965	ENSGT00950000182824.a.b.a #35
Elapidae	ANCESTRAL SPECIES	2	ENSGT00940000155865	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a.s #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT01030000237821	ENSGT00940000155071.E.m.a #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873.k	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT01030000235965	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36
Elapidae_a	ANCESTRAL SPECIES	8	ENSGT00940000155865	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a.s #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT01030000237821	ENSGT00940000155071.E.m.a #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873.k	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a.c #35	ENSGT00530000063557.a #36	ENSGT00390000014353
Acanthophiinae	ANCESTRAL SPECIES	10	ENSGT00940000155865	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a.s #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT01030000237821	ENSGT00940000155071.E.m.a #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873.k	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a.c #35	ENSGT00530000063557.a #36	ENSGT00390000014353
Mainland tiger snake	MODERN SPECIES	2	RYBP (ENSNSUG00000007004) #10	ENSNSUG00000006999 #11	ENSNSUG00000006998 #11	GXYLT2 (ENSNSUG00000006994) #12	ENSNSUG00000006992	PDZRN3 (ENSNSUG00000006989) #13	ENSNSUG00000006988	CNTN3 (ENSNSUG00000006618) #14	ENSNSUG00000006605	CHL1 (ENSNSUG00000006603) #15	CNTN6 (ENSNSUG00000006539) #16	CNTN4 (ENSNSUG00000006531) #17	TRNT1 (ENSNSUG00000006530) #19	CRBN (ENSNSUG00000006528) #20	LRRN1 (ENSNSUG00000006527) #21	ENSNSUG00000006524 #22	SUMF1 (ENSNSUG00000006522) #23	ENSNSUG00000006519	ITPR1 (ENSNSUG00000006516) #24	BHLHE40 (ENSNSUG00000006512) #26	ARL8B (ENSNSUG00000006508) #27	EDEM1 (ENSNSUG00000006360) #28	ENSNSUG00000006357 #29	GRM7 (ENSNSUG00000006356) #29	LMCD1 (ENSNSUG00000006355) #30	SSUH2 (ENSNSUG00000006353) #31	ENSNSUG00000006350	OXTR (ENSNSUG00000006347) #33	ENSNSUG00000006346	SRGAP3 (ENSNSUG00000006301) #35	THUMPD3 (ENSNSUG00000006295) #36
Eastern brown snake	MODERN SPECIES	3	EIF4E3 (ENSPTXG00000004035)	GPR27 (ENSPTXG00000004036)	PROK2 (ENSPTXG00000004037) #8	RYBP (ENSPTXG00000004041) #10	SHQ1 (ENSPTXG00000000044) #11	GXYLT2 (ENSPTXG00000000072) #12	ENSPTXG00000000107	PDZRN3 (ENSPTXG00000000135) #13	CNTN3 (ENSPTXG00000000180) #14	CHL1 (ENSPTXG00000000274) #15	ENSPTXG00000000362 #16	CNTN4 (ENSPTXG00000000390) #17	TRNT1 (ENSPTXG00000000410) #19	CRBN (ENSPTXG00000000440) #20	LRRN1 (ENSPTXG00000000450) #21	ENSPTXG00000000457 #22	SUMF1 (ENSPTXG00000000467) #23	ITPR1 (ENSPTXG00000000808) #24	ENSPTXG00000002883	BHLHE40 (ENSPTXG00000002885) #26	ARL8B (ENSPTXG00000002887) #27	EDEM1 (ENSPTXG00000002889) #28	GRM7 (ENSPTXG00000002895) #29	LMCD1 (ENSPTXG00000002903) #30	SSUH2 (ENSPTXG00000002904) #31	ENSPTXG00000002905	OXTR (ENSPTXG00000002906) #33	RAD18 (ENSPTXG00000002908) #34	SRGAP3 (ENSPTXG00000002911) #35	THUMPD3 (ENSPTXG00000002916) #36	ENSPTXG00000002920
Blue-lipped sea krait	MODERN SPECIES	6002																ENSLLTG00000014091 #22	SUMF1 (ENSLLTG00000014088) #23
Indian cobra	MODERN SPECIES	1	PROK2 (ENSNNAG00000001687) #8	RYBP (ENSNNAG00000001699) #10	ENSNNAG00000001713 #11	ENSNNAG00000001725 #11	GXYLT2 (ENSNNAG00000001742) #12	ENSNNAG00000001768	PDZRN3 (ENSNNAG00000001782) #13	ENSNNAG00000001814	CNTN3 (ENSNNAG00000001838) #14	CHL1 (ENSNNAG00000001897) #15	CNTN6 (ENSNNAG00000002047) #16	CNTN4 (ENSNNAG00000002367) #17	TRNT1 (ENSNNAG00000002400) #19	ENSNNAG00000002424 #20	LRRN1 (ENSNNAG00000002516) #21	ENSNNAG00000002521 #22	SUMF1 (ENSNNAG00000002532) #23	ENSNNAG00000004054 #24	BHLHE40 (ENSNNAG00000018438) #26	ARL8B (ENSNNAG00000018443) #27	EDEM1 (ENSNNAG00000018450) #28	ENSNNAG00000018468 #29	GRM7 (ENSNNAG00000018473) #29	LMCD1 (ENSNNAG00000018484) #30	SSUH2 (ENSNNAG00000018487) #31	ENSNNAG00000018494	OXTR (ENSNNAG00000018500) #33	ENSNNAG00000018503	SRGAP3 (ENSNNAG00000018519) #35	THUMPD3 (ENSNNAG00000018537) #36	ENSNNAG00000018544
Lizard	MODERN SPECIES	1	PDZRN3 (ENSACAG00000014911) #13	ENSACAG00000043635	CNTN3 (ENSACAG00000014961) #14	CHL1 (ENSACAG00000001405) #15	ENSACAG00000041579	ENSACAG00000040802	CNTN6 (ENSACAG00000010425) #16	ENSACAG00000036977	ENSACAG00000005659 #17	ENSACAG00000037414	ENSACAG00000036932	TRNT1 (ENSACAG00000005657) #19	CRBN (ENSACAG00000005582) #20	ENSACAG00000045387	LRRN1 (ENSACAG00000026715) #21	ENSACAG00000045524 #22	SUMF1 (ENSACAG00000010294) #23	ENSACAG00000035619	ITPR1 (ENSACAG00000009987) #24	ENSACAG00000037777	BHLHE40 (ENSACAG00000012577) #26	ARL8B (ENSACAG00000045374) #27	EDEM1 (ENSACAG00000012377) #28	ENSACAG00000029600	ENSACAG00000040711	ENSACAG00000043925 #29	ENSACAG00000045588	ENSACAG00000034877	ENSACAG00000009849 #29	trh (ENSACAG00000043370)	ENSACAG00000012305
Laterata	ANCESTRAL SPECIES	1	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873.l	ENSGT00940000163873.k	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00390000014353
Common wall lizard	MODERN SPECIES	10	PDZRN3 (ENSPMRG00000015257) #13	ENSPMRG00000015251	CNTN3 (ENSPMRG00000014964) #14	ENSPMRG00000014911	ENSPMRG00000014875	CHL1 (ENSPMRG00000014819) #15	ENSPMRG00000014808	CNTN6 (ENSPMRG00000014662) #16	CNTN4 (ENSPMRG00000014619) #17	ENSPMRG00000014615	TRNT1 (ENSPMRG00000014610) #19	CRBN (ENSPMRG00000014605) #20	LRRN1 (ENSPMRG00000014601) #21	ENSPMRG00000014598	ENSPMRG00000014589	ENSPMRG00000014584 #22	SUMF1 (ENSPMRG00000014573) #23	ITPR1 (ENSPMRG00000006931) #24	BHLHE40 (ENSPMRG00000005541) #26	ARL8B (ENSPMRG00000005530) #27	EDEM1 (ENSPMRG00000005413) #28	ENSPMRG00000005385	ENSPMRG00000005378	ENSPMRG00000005371 #29	ENSPMRG00000005362 #29	ENSPMRG00000005354	LMCD1 (ENSPMRG00000005344) #30	SSUH2 (ENSPMRG00000005332) #31	ENSPMRG00000005319	OXTR (ENSPMRG00000005313) #33	RAD18 (ENSPMRG00000005296) #34
Argentine black and white tegu	MODERN SPECIES	30	PDZRN3 (ENSSMRG00000003119) #13	ENSSMRG00000003187	CNTN3 (ENSSMRG00000003298) #14	ENSSMRG00000010160	ENSSMRG00000010165	ENSSMRG00000010173	ENSSMRG00000010180	CHL1 (ENSSMRG00000010197) #15	CNTN6 (ENSSMRG00000013978) #16	ENSSMRG00000017841	CNTN4 (ENSSMRG00000017856) #17	ENSSMRG00000017860	TRNT1 (ENSSMRG00000017861) #19	CRBN (ENSSMRG00000017863) #20	LRRN1 (ENSSMRG00000017865) #21	ENSSMRG00000017868 #22	SUMF1 (ENSSMRG00000017869) #23	ITPR1 (ENSSMRG00000017870) #24	BHLHE40 (ENSSMRG00000017876) #26	ARL8B (ENSSMRG00000017877) #27	EDEM1 (ENSSMRG00000017878) #28	ENSSMRG00000017879	ENSSMRG00000017881
tuatara	MODERN SPECIES	1077																ENSSPUG00000002766 #22	SUMF1 (ENSSPUG00000002756) #23	ITPR1 (ENSSPUG00000002645) #24	BHLHE40 (ENSSPUG00000002630) #26	ARL8B (ENSSPUG00000002625) #27	EDEM1 (ENSSPUG00000002609) #28
Archelosauria	ANCESTRAL SPECIES	17	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT01030000237821	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873.l	ENSGT00940000163873.k	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35
Archosauria	ANCESTRAL SPECIES	24	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT01030000237821	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873.l	ENSGT00940000163873.k	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35
Aves	ANCESTRAL SPECIES	29	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00390000014353	ENSGT00940000159835
Neognathae	ANCESTRAL SPECIES	27	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00390000014353	ENSGT00940000159835
Galloanserae	ANCESTRAL SPECIES	26	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00390000014353	ENSGT00940000159835
Anatidae	ANCESTRAL SPECIES	41	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00390000014353	ENSGT00940000159835
Pink-footed goose	MODERN SPECIES	49	GPR27 (ENSABRG00000016783)	PROK2 (ENSABRG00000016781) #8	RYBP (ENSABRG00000016768) #10	SHQ1 (ENSABRG00000016761) #11	GXYLT2 (ENSABRG00000016756) #12	PPP4R2 (ENSABRG00000016753)	PDZRN3 (ENSABRG00000016746) #13	CNTN3 (ENSABRG00000016737) #14	CHL1 (ENSABRG00000016703) #15	CNTN6 (ENSABRG00000015653) #16	CNTN4 (ENSABRG00000014569) #17	IL5RA (ENSABRG00000014471) #18	TRNT1 (ENSABRG00000014416) #19	CRBN (ENSABRG00000014371) #20	LRRN1 (ENSABRG00000014369) #21	ENSABRG00000014367 #22	SUMF1 (ENSABRG00000014365) #23	ITPR1 (ENSABRG00000010195) #24	BHLHE40 (ENSABRG00000009713) #26	ARL8B (ENSABRG00000009711) #27	EDEM1 (ENSABRG00000009573) #28	GRM7 (ENSABRG00000009502) #29	LMCD1 (ENSABRG00000009469) #30	SSUH2 (ENSABRG00000009453) #31	CAV3 (ENSABRG00000009447) #32	OXTR (ENSABRG00000009437) #33	RAD18 (ENSABRG00000009421) #34	SRGAP3 (ENSABRG00000009392) #35	THUMPD3 (ENSABRG00000009373) #36	ENSABRG00000009365	IRAK2 (ENSABRG00000009344)
Duck	MODERN SPECIES	4	GPR27 (ENSAPLG00000011697)	PROK2 (ENSAPLG00000011432) #8	RYBP (ENSAPLG00000013882) #10	SHQ1 (ENSAPLG00000013926) #11	GXYLT2 (ENSAPLG00000013945) #12	PPP4R2 (ENSAPLG00000014045)	PDZRN3 (ENSAPLG00000014073) #13	CNTN3 (ENSAPLG00000009693) #14	CHL1 (ENSAPLG00000007000) #15	CNTN6 (ENSAPLG00000005639) #16	CNTN4 (ENSAPLG00000004320) #17	IL5RA (ENSAPLG00000004282) #18	TRNT1 (ENSAPLG00000004258) #19	CRBN (ENSAPLG00000003897) #20	LRRN1 (ENSAPLG00000001694) #21	ENSAPLG00000001691 #22	SUMF1 (ENSAPLG00000003538) #23	ITPR1 (ENSAPLG00000016350) #24	BHLHE40 (ENSAPLG00000016313) #26	ARL8B (ENSAPLG00000016295) #27	EDEM1 (ENSAPLG00000027743) #28	GRM7 (ENSAPLG00000002555) #29	LMCD1 (ENSAPLG00000002970) #30	SSUH2 (ENSAPLG00000003015) #31	CAV3 (ENSAPLG00000003098) #32	OXTR (ENSAPLG00000003100) #33	RAD18 (ENSAPLG00000003138) #34	SRGAP3 (ENSAPLG00000003289) #35	THUMPD3 (ENSAPLG00000003598) #36	ENSAPLG00000003676	IRAK2 (ENSAPLG00000003679)
Phasianidae	ANCESTRAL SPECIES	16	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a.e #35	ENSGT00530000063557.a #36	ENSGT00390000014353	ENSGT00940000159835	ENSGT00390000004064
Phasianidae_b	ANCESTRAL SPECIES	16	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000165570	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a.e #35	ENSGT00530000063557.a #36	ENSGT00390000014353	ENSGT00940000159835	ENSGT00390000004064
Chicken	MODERN SPECIES	3	PROK2 (ENSGALG00010019225) #8	RYBP (ENSGALG00010018991) #10	SHQ1 (ENSGALG00010020307) #11	GXYLT2 (ENSGALG00010020309) #12	PPP4R2 (ENSGALG00010020329)	PDZRN3 (ENSGALG00010020350) #13	ENSGALG00010020359	CNTN3 (ENSGALG00010020369) #14	CHL1 (ENSGALG00010020396) #15	CNTN6 (ENSGALG00010020425) #16	CNTN4 (ENSGALG00010020436) #17	IL5RA (ENSGALG00010020457) #18	TRNT1 (ENSGALG00010020484) #19	CRBN (ENSGALG00010020509) #20	LRRN1 (ENSGALG00010020562) #21	ENSGALG00010020580 #22	SUMF1 (ENSGALG00010020596) #23	ITPR1 (ENSGALG00010021688) #24	BHLHE40 (ENSGALG00010021719) #26	ARL8B (ENSGALG00010021730) #27	EDEM1 (ENSGALG00010021736) #28	GRM7 (ENSGALG00010019426) #29	LMCD1 (ENSGALG00010019441) #30	CAV3 (ENSGALG00010019451) #32	OXTR (ENSGALG00010019473) #33	RAD18 (ENSGALG00010019584) #34	SRGAP3 (ENSGALG00010019624) #35	THUMPD3 (ENSGALG00010018999) #36	ENSGALG00010019006	IRAK2 (ENSGALG00010019017)	GHRL (ENSGALG00010019047)
Turkey	MODERN SPECIES	5	SHQ1 (ENSMGAG00000009640) #11	PPP4R2 (ENSMGAG00000009674)	GXYLT2 (ENSMGAG00000009655) #12	ENSMGAG00000018290	PDZRN3 (ENSMGAG00000009691) #13	ENSMGAG00000017393	ENSMGAG00000021720	ENSMGAG00000009709 #14	CHL1 (ENSMGAG00000009762) #15	CNTN6 (ENSMGAG00000009812) #16	CNTN4 (ENSMGAG00000009910) #17	IL5RA (ENSMGAG00000009996) #18	CRBN (ENSMGAG00000010013) #20	TRNT1 (ENSMGAG00000009971) #19	LRRN1 (ENSMGAG00000009988) #21	ENSMGAG00000018225 #22	SUMF1 (ENSMGAG00000010033) #23	ITPR1 (ENSMGAG00000010046) #24	BHLHE40 (ENSMGAG00000018338) #26	ARL8B (ENSMGAG00000017811) #27	EDEM1 (ENSMGAG00000010070) #28	GRM7 (ENSMGAG00000010102) #29	ENSMGAG00000018916 #35	ENSMGAG00000019285 #35	ENSMGAG00000010131 #34	OXTR (ENSMGAG00000010127) #33	ENSMGAG00000010109 #30	ENSMGAG00000010119 #32	ENSMGAG00000010182 #36	IRAK2 (ENSMGAG00000010194)	ENSMGAG00000010214
Japanese quail	MODERN SPECIES	3	RYBP (ENSCJPG00005018659) #10	SHQ1 (ENSCJPG00005018660) #11	GXYLT2 (ENSCJPG00005018661) #12	ENSCJPG00005018662	PDZRN3 (ENSCJPG00005018664) #13	CNTN3 (ENSCJPG00005018668) #14	CHL1 (ENSCJPG00005018669) #15	ENSCJPG00005018674	ENSCJPG00005018675	CNTN6 (ENSCJPG00005018676) #16	CNTN4 (ENSCJPG00005018679) #17	IL5RA (ENSCJPG00005018680) #18	TRNT1 (ENSCJPG00005018681) #19	CRBN (ENSCJPG00005018682) #20	LRRN1 (ENSCJPG00005018683) #21	ENSCJPG00005018684 #22	SUMF1 (ENSCJPG00005018685) #23	ITPR1 (ENSCJPG00005018726) #24	ENSCJPG00005020532	BHLHE40 (ENSCJPG00005020534) #26	ARL8B (ENSCJPG00005020535) #27	EDEM1 (ENSCJPG00005020536) #28	ENSCJPG00005020539 #29	ENSCJPG00005020540 #29	LMCD1 (ENSCJPG00005020541) #30	CAV3 (ENSCJPG00005020542) #32	OXTR (ENSCJPG00005020543) #33	RAD18 (ENSCJPG00005020544) #34	SRGAP3 (ENSCJPG00005020553) #35	THUMPD3 (ENSCJPG00005020742) #36	ENSCJPG00005020743
Neognathae_b	ANCESTRAL SPECIES	18	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00390000014353	ENSGT00940000159835
Passeriformes	ANCESTRAL SPECIES	16	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000153393.B
Great tit	MODERN SPECIES	3	GPR27 (ENSPMJG00000005597)	PROK2 (ENSPMJG00000005599) #8	RYBP (ENSPMJG00000005603) #10	SHQ1 (ENSPMJG00000005611) #11	GXYLT2 (ENSPMJG00000005617) #12	ENSPMJG00000005654	PDZRN3 (ENSPMJG00000005657) #13	ENSPMJG00000005665	CNTN3 (ENSPMJG00000005671) #14	CHL1 (ENSPMJG00000005688) #15	CNTN6 (ENSPMJG00000005736) #16	CNTN4 (ENSPMJG00000005757) #17	IL5RA (ENSPMJG00000005764) #18	TRNT1 (ENSPMJG00000005765) #19	CRBN (ENSPMJG00000005773) #20	ENSPMJG00000005792 #22	SUMF1 (ENSPMJG00000005794) #23	ITPR1 (ENSPMJG00000005801) #24	BHLHE40 (ENSPMJG00000005858) #26	ARL8B (ENSPMJG00000005862) #27	EDEM1 (ENSPMJG00000005863) #28	GRM7 (ENSPMJG00000005895) #29	LMCD1 (ENSPMJG00000005956) #30	CAV3 (ENSPMJG00000005958) #32	OXTR (ENSPMJG00000005959) #33	RAD18 (ENSPMJG00000005960) #34	ENSPMJG00000005966	SRGAP3 (ENSPMJG00000005970) #35	THUMPD3 (ENSPMJG00000005977) #36	ENSPMJG00000005978	IRAK2 (ENSPMJG00000005988)
Passeriformes_d	ANCESTRAL SPECIES	16	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000153393.B
Flycatcher	MODERN SPECIES	3	RYBP (ENSFALG00000027888) #10	SHQ1 (ENSFALG00000013428) #11	GXYLT2 (ENSFALG00000024120) #12	PPP4R2 (ENSFALG00000013436)	PDZRN3 (ENSFALG00000013445) #13	ENSFALG00000027072	CNTN3 (ENSFALG00000013457) #14	CHL1 (ENSFALG00000013463) #15	CNTN6 (ENSFALG00000013472) #16	CNTN4 (ENSFALG00000013504) #17	ENSFALG00000025220	IL5RA (ENSFALG00000013534) #18	TRNT1 (ENSFALG00000013539) #19	CRBN (ENSFALG00000013540) #20	LRRN1 (ENSFALG00000014525) #21	ENSFALG00000023036 #22	SUMF1 (ENSFALG00000013555) #23	ITPR1 (ENSFALG00000013566) #24	ENSFALG00000023539	ENSFALG00000027473 #26	ARL8B (ENSFALG00000013578) #27	EDEM1 (ENSFALG00000013588) #28	ENSFALG00000024020	GRM7 (ENSFALG00000013602) #29	ENSFALG00000025075	LMCD1 (ENSFALG00000013612) #30	CAV3 (ENSFALG00000024966) #32	OXTR (ENSFALG00000013622) #33	RAD18 (ENSFALG00000013625) #34	SRGAP3 (ENSFALG00000013628) #35	ENSFALG00000023660
Passeriformes_g	ANCESTRAL SPECIES	16	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C.l #17	ENSGT00940000155198.C.k #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000153393.B
Passeroidea	ANCESTRAL SPECIES	16	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C.l #17	ENSGT00940000155198.C.k #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000153393.B
Zebra finch	MODERN SPECIES	3	EIF4E3 (ENSTGUG00000009923)	GPR27 (ENSTGUG00000009928)	PROK2 (ENSTGUG00000026872) #8	RYBP (ENSTGUG00000020831) #10	SHQ1 (ENSTGUG00000009933) #11	ENSTGUG00000009943	PDZRN3 (ENSTGUG00000014523) #13	CNTN3 (ENSTGUG00000009960) #14	CHL1 (ENSTGUG00000009997) #15	CNTN6 (ENSTGUG00000010053) #16	CNTN4 (ENSTGUG00000010102) #17	IL5RA (ENSTGUG00000010171) #18	TRNT1 (ENSTGUG00000010192) #19	CRBN (ENSTGUG00000010200) #20	LRRN1 (ENSTGUG00000010215) #21	ENSTGUG00000019447 #22	SUMF1 (ENSTGUG00000010221) #23	ITPR1 (ENSTGUG00000010241) #24	BHLHE40 (ENSTGUG00000010301) #26	ARL8B (ENSTGUG00000022959) #27	EDEM1 (ENSTGUG00000010316) #28	GRM7 (ENSTGUG00000010358) #29	LMCD1 (ENSTGUG00000010388) #30	CAV3 (ENSTGUG00000010401) #32	OXTR (ENSTGUG00000020441) #33	RAD18 (ENSTGUG00000010405) #34	SRGAP3 (ENSTGUG00000010415) #35	THUMPD3 (ENSTGUG00000010440) #36	ENSTGUG00000024732	IRAK2 (ENSTGUG00000010449)	SEC13 (ENSTGUG00000010453)
Common canary	MODERN SPECIES	70															LRRN1 (ENSSCAG00000016036) #21	ENSSCAG00000016034 #22	SUMF1 (ENSSCAG00000016032) #23	ENSSCAG00000016024	ITPR1 (ENSSCAG00000013652) #24	BHLHE40 (ENSSCAG00000012457) #26	ARL8B (ENSSCAG00000012450) #27	EDEM1 (ENSSCAG00000012366) #28	CNTN6 (ENSSCAG00000012325) #16	ENSSCAG00000012309 #17	ENSSCAG00000012298 #17	IL5RA (ENSSCAG00000012281) #18	TRNT1 (ENSSCAG00000012278) #19	CRBN (ENSSCAG00000012252) #20
Medium ground finch	MODERN SPECIES	123										CNTN6 (ENSGFOG00000006749) #16	CNTN4 (ENSGFOG00000007641) #17	IL5RA (ENSGFOG00000007674) #18	TRNT1 (ENSGFOG00000007738) #19	CRBN (ENSGFOG00000007741) #20	LRRN1 (ENSGFOG00000007754) #21	ENSGFOG00000007761 #22	SUMF1 (ENSGFOG00000007775) #23	ITPR1 (ENSGFOG00000007908) #24	BHLHE40 (ENSGFOG00000008912) #26	ARL8B (ENSGFOG00000008921) #27	EDEM1 (ENSGFOG00000008936) #28	GRM7 (ENSGFOG00000008966) #29	LMCD1 (ENSGFOG00000008974) #30	ENSGFOG00000008981	CAV3 (ENSGFOG00000008983) #32	OXTR (ENSGFOG00000008986) #33	RAD18 (ENSGFOG00000008990) #34	SRGAP3 (ENSGFOG00000009033) #35	THUMPD3 (ENSGFOG00000009508) #36	ENSGFOG00000009517	IRAK2 (ENSGFOG00000009530)
Neognathae_c	ANCESTRAL SPECIES	21	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000162859	ENSGT00950000183062.a.a.a #13	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00390000014353	ENSGT00940000159835
Kakapo	MODERN SPECIES	3	PROK2 (ENSSHBG00005010813) #8	RYBP (ENSSHBG00005010792) #10	SHQ1 (ENSSHBG00005010752) #11	GXYLT2 (ENSSHBG00005010727) #12	ENSSHBG00005010670	PDZRN3 (ENSSHBG00005010639) #13	ENSSHBG00005010579	CNTN3 (ENSSHBG00005000965) #14	CHL1 (ENSSHBG00005021241) #15	CNTN6 (ENSSHBG00005021239) #16	CNTN4 (ENSSHBG00005021238) #17	IL5RA (ENSSHBG00005021237) #18	TRNT1 (ENSSHBG00005021236) #19	CRBN (ENSSHBG00005021235) #20	LRRN1 (ENSSHBG00005021234) #21	ENSSHBG00005021232 #22	SUMF1 (ENSSHBG00005021231) #23	ITPR1 (ENSSHBG00005021182) #24	BHLHE40 (ENSSHBG00005021165) #26	ARL8B (ENSSHBG00005021164) #27	EDEM1 (ENSSHBG00005021161) #28	GRM7 (ENSSHBG00005021159) #29	LMCD1 (ENSSHBG00005021158) #30	SSUH2 (ENSSHBG00005021156) #31	CAV3 (ENSSHBG00005021155) #32	OXTR (ENSSHBG00005021154) #33	RAD18 (ENSSHBG00005021151) #34	SRGAP3 (ENSSHBG00005021150) #35	THUMPD3 (ENSSHBG00005021147) #36	ENSSHBG00005021145	IRAK2 (ENSSHBG00005021143)
Golden eagle	MODERN SPECIES	12	RYBP (ENSACCG00020008553) #10	SHQ1 (ENSACCG00020008571) #11	GXYLT2 (ENSACCG00020008596) #12	PPP4R2 (ENSACCG00020008614)	PDZRN3 (ENSACCG00020008644) #13	CNTN3 (ENSACCG00020008678) #14	CHL1 (ENSACCG00020009287) #15	CNTN6 (ENSACCG00020009592) #16	CNTN4 (ENSACCG00020009634) #17	ENSACCG00020009645	IL5RA (ENSACCG00020009685) #18	TRNT1 (ENSACCG00020009728) #19	CRBN (ENSACCG00020009742) #20	ENSACCG00020009755	LRRN1 (ENSACCG00020009768) #21	ENSACCG00020009779 #22	SUMF1 (ENSACCG00020009793) #23	ITPR1 (ENSACCG00020009868) #24	BHLHE40 (ENSACCG00020009955) #26	ARL8B (ENSACCG00020009966) #27	EDEM1 (ENSACCG00020009983) #28	GRM7 (ENSACCG00020010003) #29	LMCD1 (ENSACCG00020010014) #30	SSUH2 (ENSACCG00020010024) #31	CAV3 (ENSACCG00020010035) #32	OXTR (ENSACCG00020010045) #33	RAD18 (ENSACCG00020010080) #34	SRGAP3 (ENSACCG00020010374) #35	THUMPD3 (ENSACCG00020010551) #36	ENSACCG00020010562	IRAK2 (ENSACCG00020010579)
African ostrich	MODERN SPECIES	1076	RYBP (ENSSCUG00000015421) #10	SHQ1 (ENSSCUG00000015411) #11	GXYLT2 (ENSSCUG00000015407) #12	PPP4R2 (ENSSCUG00000015403)	PDZRN3 (ENSSCUG00000015402) #13	ENSSCUG00000015400	CNTN3 (ENSSCUG00000015390) #14	CHL1 (ENSSCUG00000015369) #15	CNTN6 (ENSSCUG00000015354) #16	ENSSCUG00000015349	CNTN4 (ENSSCUG00000015339) #17	IL5RA (ENSSCUG00000015330) #18	TRNT1 (ENSSCUG00000015323) #19	CRBN (ENSSCUG00000015318) #20	LRRN1 (ENSSCUG00000015306) #21	ENSSCUG00000015304 #22	SUMF1 (ENSSCUG00000015300) #23	ENSSCUG00000015218 #24
Australian saltwater crocodile	MODERN SPECIES	37	ENSCPRG00005015737 #11	GXYLT2 (ENSCPRG00005015736) #12	PPP4R2 (ENSCPRG00005015732)	PDZRN3 (ENSCPRG00005015721) #13	CNTN3 (ENSCPRG00005015706) #14	ENSCPRG00005015700	CHL1 (ENSCPRG00005015694) #15	CNTN6 (ENSCPRG00005015511) #16	ENSCPRG00005015470	ENSCPRG00005015468	CNTN4 (ENSCPRG00005015455) #17	IL5RA (ENSCPRG00005015437) #18	TRNT1 (ENSCPRG00005015429) #19	CRBN (ENSCPRG00005015422) #20	LRRN1 (ENSCPRG00005015420) #21	ENSCPRG00005015416 #22	SUMF1 (ENSCPRG00005015401) #23	ENSCPRG00005015393	ITPR1 (ENSCPRG00005013420) #24	BHLHE40 (ENSCPRG00005013082) #26	ARL8B (ENSCPRG00005013015) #27	EDEM1 (ENSCPRG00005012826) #28	ENSCPRG00005012786 ##29	GRM7 (ENSCPRG00005012779) #29	ENSCPRG00005012767	LMCD1 (ENSCPRG00005012738) #30	ENSCPRG00005012724	ENSCPRG00005012717	CAV3 (ENSCPRG00005012711) #32	OXTR (ENSCPRG00005012696) #33	RAD18 (ENSCPRG00005012686) #34
Cryptodira	ANCESTRAL SPECIES	17	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873.l	ENSGT00940000163873.k	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT01030000238841	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873.l	ENSGT00940000163873.k	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35
Emydidae	ANCESTRAL SPECIES	13	ENSGT00890000139436.A.a	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT01030000238841	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873.l	ENSGT00940000163873.k	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35
Three-toed box turtle	MODERN SPECIES	33	RYBP (ENSTMTG00000017980) #10	SHQ1 (ENSTMTG00000017994) #11	GXYLT2 (ENSTMTG00000018007) #12	PPP4R2 (ENSTMTG00000018024)	PDZRN3 (ENSTMTG00000018055) #13	CNTN3 (ENSTMTG00000018117) #14	CHL1 (ENSTMTG00000018260) #15	ENSTMTG00000018456	CNTN6 (ENSTMTG00000018470) #16	CNTN4 (ENSTMTG00000018539) #17	IL5RA (ENSTMTG00000018639) #18	TRNT1 (ENSTMTG00000018738) #19	CRBN (ENSTMTG00000018758) #20	LRRN1 (ENSTMTG00000018782) #21	SUMF1 (ENSTMTG00000018795) #23	ENSTMTG00000018826 #22	ITPR1 (ENSTMTG00000018838) #24	ENSTMTG00000018932	BHLHE40 (ENSTMTG00000018947) #26	ARL8B (ENSTMTG00000018960) #27	EDEM1 (ENSTMTG00000018977) #28	GRM7 (ENSTMTG00000019012) #29	LMCD1 (ENSTMTG00000019124) #30	SSUH2 (ENSTMTG00000019142) #31	ENSTMTG00000019174	ENSTMTG00000019192	CAV3 (ENSTMTG00000019214) #32	OXTR (ENSTMTG00000019224) #33	RAD18 (ENSTMTG00000019261) #34	SRGAP3 (ENSTMTG00000019297) #35	THUMPD3 (ENSTMTG00000019533) #36
painted turtle	MODERN SPECIES	699										CNTN6 (ENSCPBG00000017663) #16	CNTN4 (ENSCPBG00000017643) #17	IL5RA (ENSCPBG00000017639) #18	TRNT1 (ENSCPBG00000017636) #19	CRBN (ENSCPBG00000017633) #20	LRRN1 (ENSCPBG00000017631) #21	ENSCPBG00000017630 #22	SUMF1 (ENSCPBG00000017623) #23	ITPR1 (ENSCPBG00000015066) #24	BHLHE40 (ENSCPBG00000014940) #26	ARL8B (ENSCPBG00000014937) #27	EDEM1 (ENSCPBG00000014836) #28	GRM7 (ENSCPBG00000014825) #29	ENSCPBG00000014823	LMCD1 (ENSCPBG00000014818) #30	SSUH2 (ENSCPBG00000014808) #31	ENSCPBG00000014803	ENSCPBG00000014800	CAV3 (ENSCPBG00000014797) #32	OXTR (ENSCPBG00000014795) #33	RAD18 (ENSCPBG00000014787) #34	SRGAP3 (ENSCPBG00000014775) #35
Testudinidae	ANCESTRAL SPECIES	5	ENSGT00940000162026 #8	ENSGT00390000013995.b.a #10	ENSGT00390000007605 #11	ENSGT00940000158065 #12	ENSGT00940000160975	ENSGT00950000183062.a.a.a #13	ENSGT00530000063647.A.a.d	ENSGT00940000160282 #14	ENSGT00940000160080 #15	ENSGT00940000160606 #16	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT01030000238841	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00440000038003 #31	ENSGT00940000163873.l	ENSGT00940000163873.k	ENSGT00950000183006.B.f.b.b #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35
Abingdon island giant tortoise	MODERN SPECIES	1018											CNTN4 (ENSCABG00000017322) #17	IL5RA (ENSCABG00000017331) #18	TRNT1 (ENSCABG00000017350) #19	CRBN (ENSCABG00000017369) #20	LRRN1 (ENSCABG00000017472) #21	ENSCABG00000017474 #22	SUMF1 (ENSCABG00000017480) #23	ITPR1 (ENSCABG00000017505) #24	ENSCABG00000017520	BHLHE40 (ENSCABG00000017522) #26	ARL8B (ENSCABG00000017525) #27	EDEM1 (ENSCABG00000017541) #28	GRM7 (ENSCABG00000017790) #29	LMCD1 (ENSCABG00000017807) #30	SSUH2 (ENSCABG00000017809) #31	CAV3 (ENSCABG00000017812) #32	OXTR (ENSCABG00000017814) #33	RAD18 (ENSCABG00000017818) #34	SRGAP3 (ENSCABG00000000091) #35	THUMPD3 (ENSCABG00000000193) #36	ENSCABG00000000206
Goode s thornscrub tortoise	MODERN SPECIES	21	SHQ1 (ENSGEVG00005018751) #11	GXYLT2 (ENSGEVG00005018737) #12	PPP4R2 (ENSGEVG00005018720)	PDZRN3 (ENSGEVG00005018672) #13	ENSGEVG00005018629	CNTN3 (ENSGEVG00005018336) #14	CHL1 (ENSGEVG00005018075) #15	CNTN6 (ENSGEVG00005017681) #16	ENSGEVG00005017608	CNTN4 (ENSGEVG00005017523) #17	IL5RA (ENSGEVG00005017497) #18	ENSGEVG00005017472	TRNT1 (ENSGEVG00005017461) #19	CRBN (ENSGEVG00005017441) #20	LRRN1 (ENSGEVG00005017431) #21	ENSGEVG00005017420 #22	SUMF1 (ENSGEVG00005017395) #23	ENSGEVG00005017380 #24	ENSGEVG00005011014 #24	BHLHE40 (ENSGEVG00005010114) #26	ARL8B (ENSGEVG00005010089) #27	EDEM1 (ENSGEVG00005009852) #28	GRM7 (ENSGEVG00005009564) #29	LMCD1 (ENSGEVG00005009447) #30	SSUH2 (ENSGEVG00005009363) #31	ENSGEVG00005009300	ENSGEVG00005009228	CAV3 (ENSGEVG00005009176) #32	OXTR (ENSGEVG00005009121) #33	RAD18 (ENSGEVG00005009041) #34	SRGAP3 (ENSGEVG00005007925) #35
Chinese turtle	MODERN SPECIES	1835										ENSPSIG00000017232 #17	IL5RA (ENSPSIG00000017240) #18	TRNT1 (ENSPSIG00000017356) #19	CRBN (ENSPSIG00000017465) #20	ENSPSIG00000000072	LRRN1 (ENSPSIG00000000527) #21	ENSPSIG00000017734 #22	SUMF1 (ENSPSIG00000017744) #23	ITPR1 (ENSPSIG00000017904) #24	BHLHE40 (ENSPSIG00000018157) #26	ARL8B (ENSPSIG00000005943) #27	EDEM1 (ENSPSIG00000005957) #28	ENSPSIG00000000535	GRM7 (ENSPSIG00000006085) #29	LMCD1 (ENSPSIG00000006716) #30	SSUH2 (ENSPSIG00000006779) #31	ENSPSIG00000006832	ENSPSIG00000006837	ENSPSIG00000006843	CAV3 (ENSPSIG00000006848) #32	OXTR (ENSPSIG00000006867) #33	RAD18 (ENSPSIG00000006928) #34
Anura	ANCESTRAL SPECIES	159									ENSGT00940000153541.A	ENSGT00940000161454.i.a.b	ENSGT00940000155198.C #17	ENSGT00940000160890 #18	ENSGT00390000009678 #19	ENSGT00390000016404 #20	ENSGT00940000157154.d #21	ENSGT00940000162663 #22	ENSGT00390000008983.a #23	ENSGT00940000155071.E #24	ENSGT00940000158384 #26	ENSGT00940000154861 #27	ENSGT00940000157717 #28	ENSGT01030000234648.a.a.d #29	ENSGT00940000158813 #30	ENSGT00940000163873	ENSGT00950000183006.B.f.b.b.a #32	ENSGT01050000244882.a.a.b #33	ENSGT00390000011230 #34	ENSGT00950000182824.a.b.a #35	ENSGT00530000063557.a #36	ENSGT00390000014353	ENSGT00940000159835
Leishan spiny toad	MODERN SPECIES	11	ALAS1 (ENSLLEG00000029451)	POC1A (ENSLLEG00000029518)	ENSLLEG00000029572	ENSLLEG00000029582	ENSLLEG00000029655	ENSLLEG00000029737	ENSLLEG00000029755	ENSLLEG00000029766	ENSLLEG00000029776	ENSLLEG00000029788	CNTN4 (ENSLLEG00000029791) #17	ENSLLEG00000029830 #18	TRNT1 (ENSLLEG00000029877) #19	CRBN (ENSLLEG00000030072) #20	LRRN1 (ENSLLEG00000030088) #21	ENSLLEG00000030102 #22	SUMF1 (ENSLLEG00000014064) #23	ITPR1 (ENSLLEG00000014236) #24	ENSLLEG00000017319	BHLHE40 (ENSLLEG00000017398) #26	ARL8B (ENSLLEG00000017797) #27	EDEM1 (ENSLLEG00000017941) #28	GRM7 (ENSLLEG00000018177) #29	LMCD1 (ENSLLEG00000018847) #30	ENSLLEG00000019021	ENSLLEG00000019153	ENSLLEG00000019332 #32	OXTR (ENSLLEG00000019366) #33	RAD18 (ENSLLEG00000019425) #34	ENSLLEG00000019942	SRGAP3 (ENSLLEG00000019969) #35
Frog	MODERN SPECIES	4	poc1a (ENSXETG00000010813)	alas1 (ENSXETG00000010814)	borcs6 (ENSXETG00000037917)	brk1 (ENSXETG00000027883)	pick1 (ENSXETG00000010815)	tnnc1 (ENSXETG00000010816)	ENSXETG00000025093	ENSXETG00000048206	ENSXETG00000045593	ENSXETG00000042663	cntn4 (ENSXETG00000031338) #17	il5ra (ENSXETG00000032117)	trnt1 (ENSXETG00000025091) #19	crbn (ENSXETG00000005146) #20	lrrn1 (ENSXETG00000005147) #21	setmar (ENSXETG00000032592) #22	ENSXETG00000039434	sumf1 (ENSXETG00000005149) #23	itpr1 (ENSXETG00000005153) #24	bhlhe40 (ENSXETG00000035212) #26	arl8b (ENSXETG00000034571) #27	edem1 (ENSXETG00000005217) #28	ENSXETG00000043187	grm7 (ENSXETG00000015711) #29	ENSXETG00000045616	lmcd1 (ENSXETG00000015748) #30	ENSXETG00000035465	XB5956430 [provisional:ssuh2] (ENSXETG00000015781)	ENSXETG00000046985	oxtr (ENSXETG00000001441) #33	cav3.1 (ENSXETG00000046990) #32
Coelacanth	MODERN SPECIES	2380															LRRN1 (ENSLACG00000006069) #21	setmar (ENSLACG00000008418) #22