Theria	ANCESTRAL SPECIES		ENSGT00940000153305.c	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000171365	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000171365	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Boreoeutheria	ANCESTRAL SPECIES	13	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000171365	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Euarchontoglires	ANCESTRAL SPECIES	13	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Primates	ANCESTRAL SPECIES	12	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Haplorrhini	ANCESTRAL SPECIES	8	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Simiiformes	ANCESTRAL SPECIES	12	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00860000135709 #33	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Platyrrhini	ANCESTRAL SPECIES	10	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00860000135709 #33	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288.g	ENSGT00940000157288.h	ENSGT00500000045044
Cebidae	ANCESTRAL SPECIES	9	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00860000135709 #33	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288.g	ENSGT00500000045044	ENSGT00940000159017.a.a
Marmoset	MODERN SPECIES	20	SKAP2 (ENSCJAG00000007979) #7	ENSCJAG00000072929 #8	ENSCJAG00000074413 #9	ENSCJAG00000080948 #10	HOXA1 (ENSCJAG00000008024) #11	HOXA2 (ENSCJAG00000008032) #12	HOXA3 (ENSCJAG00000043202) #13	HOXA4 (ENSCJAG00000008058) #14	HOXA5 (ENSCJAG00000047690) #15	HOXA6 (ENSCJAG00000077854) #16	HOXA7 (ENSCJAG00000080800) #17	HOXA9 (ENSCJAG00000038531) #18	HOXA10 (ENSCJAG00000081224) #19	HOXA11 (ENSCJAG00000008187) #20	HOXA13 (ENSCJAG00000008192) #21	EVX1 (ENSCJAG00000008197) #22	ENSCJAG00000081981 #23	ENSCJAG00000081017 #24	HIBADH (ENSCJAG00000008204) #25	ENSCJAG00000034676 #26	ENSCJAG00000071766 #27	ENSCJAG00000072346 #28	ENSCJAG00000070066 #29	ENSCJAG00000041938 #30	TAX1BP1 (ENSCJAG00000008245) #31	JAZF1 (ENSCJAG00000048491) #32	ENSCJAG00000069906 #33	CREB5 (ENSCJAG00000042700) #34	ENSCJAG00000076535 #35	TRIL (ENSCJAG00000045826) #36	CPVL (ENSCJAG00000008379) #37
Cebidae_a	ANCESTRAL SPECIES	7	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288.g	ENSGT00940000157288.h	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Capuchin	MODERN SPECIES	45	HNRNPA2B1 (ENSCCAG00000029074)	CBX3 (ENSCCAG00000027804)	SNX10 (ENSCCAG00000029733)	SKAP2 (ENSCCAG00000034754) #7	HOXA1 (ENSCCAG00000023769) #11	HOXA2 (ENSCCAG00000027236) #12	HOXA3 (ENSCCAG00000023332) #13	HOXA4 (ENSCCAG00000027072) #14	HOXA5 (ENSCCAG00000029402) #15	HOXA6 (ENSCCAG00000010092) #16	HOXA7 (ENSCCAG00000024332) #17	HOXA9 (ENSCCAG00000029541) #18	HOXA10 (ENSCCAG00000034574) #19	HOXA11 (ENSCCAG00000035880) #20	HOXA13 (ENSCCAG00000028264) #21	EVX1 (ENSCCAG00000030309) #22	ENSCCAG00000029237	ENSCCAG00000037634	HIBADH (ENSCCAG00000020606) #25	ENSCCAG00000025275	ENSCCAG00000019760	TAX1BP1 (ENSCCAG00000032690) #31	JAZF1 (ENSCCAG00000025827) #32	CREB5 (ENSCCAG00000028715) #34	TRIL (ENSCCAG00000003310) #36	CPVL (ENSCCAG00000037178) #37	ENSCCAG00000031849	CHN2 (ENSCCAG00000031145)	WIPF3 (ENSCCAG00000026498)	SCRN1 (ENSCCAG00000031678)	FKBP14 (ENSCCAG00000033075)
Bolivian squirrel monkey	MODERN SPECIES	112	ENSSBOG00000029159	SNX10 (ENSSBOG00000026009)	SKAP2 (ENSSBOG00000022367) #7	ENSSBOG00000035175	HOXA1 (ENSSBOG00000022017) #11	HOXA2 (ENSSBOG00000024057) #12	HOXA3 (ENSSBOG00000031444) #13	ENSSBOG00000026625 #14	HOXA5 (ENSSBOG00000027127) #15	HOXA6 (ENSSBOG00000026859) #16	HOXA7 (ENSSBOG00000023282) #17	HOXA9 (ENSSBOG00000033572) #18	HOXA10 (ENSSBOG00000033844) #19	HOXA11 (ENSSBOG00000020434) #20	HOXA13 (ENSSBOG00000024071) #21	EVX1 (ENSSBOG00000017478) #22	HIBADH (ENSSBOG00000032980) #25	TAX1BP1 (ENSSBOG00000021153) #31	JAZF1 (ENSSBOG00000031260) #32	ENSSBOG00000018196	CREB5 (ENSSBOG00000019829) #34	TRIL (ENSSBOG00000017304) #36	CPVL (ENSSBOG00000021419) #37	CHN2 (ENSSBOG00000023305)	WIPF3 (ENSSBOG00000022641)	SCRN1 (ENSSBOG00000034510)	FKBP14 (ENSSBOG00000032897)	PLEKHA8 (ENSSBOG00000020795)	MTURN (ENSSBOG00000033828)	ENSSBOG00000029979	NOD1 (ENSSBOG00000032727)
Mas night monkey	MODERN SPECIES	442	CBX3 (ENSANAG00000022611)	SNX10 (ENSANAG00000021914)	SKAP2 (ENSANAG00000029886) #7	ENSANAG00000025984	HOXA1 (ENSANAG00000037615) #11	HOXA2 (ENSANAG00000025238) #12	HOXA3 (ENSANAG00000021432) #13	HOXA4 (ENSANAG00000036216) #14	HOXA5 (ENSANAG00000034612) #15	HOXA6 (ENSANAG00000021101) #16	HOXA7 (ENSANAG00000033107) #17	HOXA9 (ENSANAG00000027317) #18	HOXA10 (ENSANAG00000024989) #19	HOXA11 (ENSANAG00000023241) #20	HOXA13 (ENSANAG00000027275) #21	EVX1 (ENSANAG00000030322) #22	HIBADH (ENSANAG00000025352) #25	ENSANAG00000028050 #31	ENSANAG00000030652	JAZF1 (ENSANAG00000034509) #32	CREB5 (ENSANAG00000013719) #34	TRIL (ENSANAG00000019308) #36	CPVL (ENSANAG00000021215) #37	CHN2 (ENSANAG00000027184)	PRR15 (ENSANAG00000007387)	WIPF3 (ENSANAG00000021691)	SCRN1 (ENSANAG00000021372)	FKBP14 (ENSANAG00000023227)	ENSANAG00000030469	PLEKHA8 (ENSANAG00000026529)	MTURN (ENSANAG00000009235)
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00860000135709 #33	ENSGT00950000183087.A.a.b.a.g.b.b	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00910000147051	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00390000009854	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00950000183087.A.a.b.a.g.b.b	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00910000147051	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288.e	ENSGT00500000045044
Hominidae	ANCESTRAL SPECIES	11	ENSGT00390000009854	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00950000183087.A.a.b.a.g.b.b	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00910000147051	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288.e	ENSGT00500000045044
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	25	ENSGT00940000156007	ENSGT00390000009854	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00390000016384.f.j.b	ENSGT00940000155255 #25	ENSGT00950000183025.b.a.o #31	ENSGT00390000003635 #32	ENSGT00950000183087.A.a.b.a.g.b.b	ENSGT00410000028196	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00910000147051	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858
Homo/Pan group	ANCESTRAL SPECIES	24	ENSGT00940000156007	ENSGT00390000009854	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00390000016384.f.j.b	ENSGT00940000155255 #25	ENSGT00950000183025.b.a.o #31	ENSGT00390000003635 #32	ENSGT00950000183087.A.a.b.a.g.b.b	ENSGT00410000028196	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288.e
Pan	ANCESTRAL SPECIES	25	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000153299.c.b.a.b.a.a.a	ENSGT01030000234542.b.a.a.a.b.a.b.c.a.b	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00390000016384.f.j.b	ENSGT00940000155255 #25	ENSGT00950000183025.b.a.o #31	ENSGT00390000003635 #32	ENSGT00950000183087.A.a.b.a.g.b.b	ENSGT00410000028196	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288.e
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	586		ENSPTRG00000047411	ENSPTRG00000045640	ENSPTRG00000050430	ENSPTRG00000048196 #11	ENSPTRG00000052389 #12	ENSPTRG00000047399 #13	ENSPTRG00000048614 #14	ENSPTRG00000048699 #15	ENSPTRG00000049275 #16	ENSPTRG00000047796 #17	ENSPTRG00000047890 #18	ENSPTRG00000052537 #19	ENSPTRG00000047456 #20	ENSPTRG00000050384 #21	ENSPTRG00000048607 #22	ENSPTRG00000046220	ENSPTRG00000042926 #25	ENSPTRG00000049297 #31
Chimpanzee	MODERN SPECIES	20	SKAP2 (ENSPTRG00000019007) #7	ENSPTRG00000049392	ENSPTRG00000044997	ENSPTRG00000049011	HOXA1 (ENSPTRG00000019010) #11	HOXA2 (ENSPTRG00000019011) #12	HOXA3 (ENSPTRG00000019012) #13	HOXA4 (ENSPTRG00000023597) #14	ENSPTRG00000019015 #15	HOXA6 (ENSPTRG00000039535) #16	HOXA7 (ENSPTRG00000019017) #17	ENSPTRG00000049485 #18	HOXA10 (ENSPTRG00000019019) #19	HOXA11 (ENSPTRG00000019020) #20	HOXA13 (ENSPTRG00000028643) #21	EVX1 (ENSPTRG00000019022) #22	ENSPTRG00000052529	HIBADH (ENSPTRG00000019024) #25	TAX1BP1 (ENSPTRG00000019025) #31	JAZF1 (ENSPTRG00000019027) #32	ENSPTRG00000045009	CREB5 (ENSPTRG00000019028) #34	ENSPTRG00000050877	TRIL (ENSPTRG00000043675) #36	CPVL (ENSPTRG00000019029) #37	CHN2 (ENSPTRG00000019030)	PRR15 (ENSPTRG00000044744)	WIPF3 (ENSPTRG00000019033)	SCRN1 (ENSPTRG00000019034)	FKBP14 (ENSPTRG00000019035)	PLEKHA8 (ENSPTRG00000019036)
Bonobo	MODERN SPECIES	20	SKAP2 (ENSPPAG00000030605) #7	ENSPPAG00000033310	ENSPPAG00000000147	ENSPPAG00000038834	HOXA1 (ENSPPAG00000000155) #11	HOXA2 (ENSPPAG00000035694) #12	HOXA3 (ENSPPAG00000032603) #13	ENSPPAG00000043774 #14	HOXA5 (ENSPPAG00000044047) #15	HOXA6 (ENSPPAG00000039975) #16	HOXA7 (ENSPPAG00000034362) #17	HOXA9 (ENSPPAG00000030004) #18	HOXA10 (ENSPPAG00000028221) #19	HOXA11 (ENSPPAG00000038132) #20	ENSPPAG00000043323 #21	EVX1 (ENSPPAG00000024119) #22	ENSPPAG00000036088	HIBADH (ENSPPAG00000042554) #25	TAX1BP1 (ENSPPAG00000022824) #31	JAZF1 (ENSPPAG00000036331) #32	ENSPPAG00000038768	CREB5 (ENSPPAG00000030641) #34	ENSPPAG00000037283	TRIL (ENSPPAG00000024310) #36	CPVL (ENSPPAG00000039137) #37	CHN2 (ENSPPAG00000031517)	PRR15 (ENSPPAG00000002015)	ENSPPAG00000005671	ENSPPAG00000024726	WIPF3 (ENSPPAG00000005537)	SCRN1 (ENSPPAG00000020473)
Human	MODERN SPECIES	19	CBX3 (ENSG00000122565)	SNX10 (ENSG00000086300)	SKAP2 (ENSG00000005020) #7	HOXA1 (ENSG00000105991) #11	HOXA2 (ENSG00000105996) #12	HOXA3 (ENSG00000105997) #13	HOXA4 (ENSG00000197576) #14	HOXA5 (ENSG00000106004) #15	HOXA6 (ENSG00000106006) #16	HOXA7 (ENSG00000122592) #17	HOXA9 (ENSG00000078399) #18	ENSG00000257184	HOXA10 (ENSG00000253293) #19	HOXA11 (ENSG00000005073) #20	HOXA13 (ENSG00000106031) #21	EVX1 (ENSG00000106038) #22	HIBADH (ENSG00000106049) #25	TAX1BP1 (ENSG00000106052) #31	JAZF1 (ENSG00000153814) #32	CREB5 (ENSG00000146592) #34	TRIL (ENSG00000255690) #36	CPVL (ENSG00000106066) #37	CHN2 (ENSG00000106069)	PRR15 (ENSG00000176532)	WIPF3 (ENSG00000122574)	SCRN1 (ENSG00000136193)	FKBP14 (ENSG00000106080)	PLEKHA8 (ENSG00000106086)	MTURN (ENSG00000180354)	ZNRF2 (ENSG00000180233)	NOD1 (ENSG00000106100)
Gorilla	MODERN SPECIES	20	SKAP2 (ENSGGOG00000002146) #7	ENSGGOG00000027139	ENSGGOG00000012668	ENSGGOG00000027198	HOXA1 (ENSGGOG00000002209) #11	HOXA2 (ENSGGOG00000002211) #12	HOXA3 (ENSGGOG00000002213) #13	ENSGGOG00000002215 #14	HOXA5 (ENSGGOG00000002217) #15	HOXA6 (ENSGGOG00000002218) #16	HOXA7 (ENSGGOG00000002220) #17	HOXA9 (ENSGGOG00000002222) #18	HOXA10 (ENSGGOG00000002225) #19	HOXA11 (ENSGGOG00000002226) #20	ENSGGOG00000005309 #21	EVX1 (ENSGGOG00000016143) #22	ENSGGOG00000026869	HIBADH (ENSGGOG00000013267) #25	TAX1BP1 (ENSGGOG00000022253) #31	JAZF1 (ENSGGOG00000011408) #32	ENSGGOG00000026228	CREB5 (ENSGGOG00000043819) #34	ENSGGOG00000024472	TRIL (ENSGGOG00000026471) #36	CPVL (ENSGGOG00000009483) #37	CHN2 (ENSGGOG00000012719)	PRR15 (ENSGGOG00000041768)	ENSGGOG00000037179	WIPF3 (ENSGGOG00000005723)	SCRN1 (ENSGGOG00000005731)	FKBP14 (ENSGGOG00000014543)
Orangutan	MODERN SPECIES	20	SNX10 (ENSPPYG00000017713)	ENSPPYG00000017711	SKAP2 (ENSPPYG00000017710) #7	HOXA1 (ENSPPYG00000029903) #11	HOXA2 (ENSPPYG00000017707) #12	HOXA3 (ENSPPYG00000017706) #13	ENSPPYG00000017705	HOXA4 (ENSPPYG00000017704) #14	HOXA5 (ENSPPYG00000017703) #15	HOXA6 (ENSPPYG00000017702) #16	HOXA7 (ENSPPYG00000017701) #17	HOXA9 (ENSPPYG00000032755) #18	ENSPPYG00000039324	HOXA11 (ENSPPYG00000017698) #20	HOXA13 (ENSPPYG00000017697) #21	EVX1 (ENSPPYG00000017696) #22	HIBADH (ENSPPYG00000017693) #25	TAX1BP1 (ENSPPYG00000017692) #31	ENSPPYG00000034672 #32	JAZF1 (ENSPPYG00000017691) #32	CREB5 (ENSPPYG00000017688) #34	TRIL (ENSPPYG00000032123) #36	CPVL (ENSPPYG00000017687) #37	CHN2 (ENSPPYG00000017686)	PRR15 (ENSPPYG00000017685)	ENSPPYG00000032931	WIPF3 (ENSPPYG00000038632)	SCRN1 (ENSPPYG00000017684)	ENSPPYG00000031497 ##10	FKBP14 (ENSPPYG00000039452)	PLEKHA8 (ENSPPYG00000017682)
Gibbon	MODERN SPECIES	7	ENSNLEG00000031144	ENSNLEG00000035004	SKAP2 (ENSNLEG00000014950) #7	ENSNLEG00000035199	HOXA1 (ENSNLEG00000014975) #11	HOXA2 (ENSNLEG00000014978) #12	HOXA3 (ENSNLEG00000014980) #13	HOXA4 (ENSNLEG00000014988) #14	HOXA6 (ENSNLEG00000014990) #16	ENSNLEG00000032135 #17	HOXA9 (ENSNLEG00000014992) #18	ENSNLEG00000018316	HOXA11 (ENSNLEG00000014994) #20	ENSNLEG00000014997 #21	ENSNLEG00000035447	EVX1 (ENSNLEG00000015000) #22	HIBADH (ENSNLEG00000015003) #25	ENSNLEG00000031715	TAX1BP1 (ENSNLEG00000015015) #31	JAZF1 (ENSNLEG00000015052) #32	ENSNLEG00000033766	ENSNLEG00000031446	CREB5 (ENSNLEG00000015057) #34	TRIL (ENSNLEG00000031765) #36	CPVL (ENSNLEG00000015062) #37	ENSNLEG00000005359	CHN2 (ENSNLEG00000015081)	PRR15 (ENSNLEG00000034928)	ENSNLEG00000015096	SCRN1 (ENSNLEG00000035744)	FKBP14 (ENSNLEG00000029878)
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00390000009854	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00940000163122	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00950000183087.A.a.b.a.g.b.b	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00910000147051	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00390000009854	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00420000029792.r	ENSGT00940000155255 #25	ENSGT00940000163122	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00950000183087.A.a.b.a.g.b.b	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00910000147051	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858
Vervet Monkey	MODERN SPECIES	13	CBX3 (ENSCSAG00000014185)	SNX10 (ENSCSAG00000014190)	ENSCSAG00000014193	SKAP2 (ENSCSAG00000014230) #7	HOXA1 (ENSCSAG00000014256) #11	HOXA2 (ENSCSAG00000014262) #12	HOXA3 (ENSCSAG00000014267) #13	HOXA4 (ENSCSAG00000014273) #14	HOXA5 (ENSCSAG00000014278) #15	HOXA6 (ENSCSAG00000014287) #16	HOXA7 (ENSCSAG00000014292) #17	HOXA9 (ENSCSAG00000014297) #18	ENSCSAG00000014302	HOXA11 (ENSCSAG00000014310) #20	HOXA13 (ENSCSAG00000014315) #21	EVX1 (ENSCSAG00000014325) #22	ENSCSAG00000019607	HIBADH (ENSCSAG00000014337) #25	TAX1BP1 (ENSCSAG00000014348) #31	JAZF1 (ENSCSAG00000014355) #32	CREB5 (ENSCSAG00000014360) #34	CPVL (ENSCSAG00000014372) #37	CHN2 (ENSCSAG00000014413)	PRR15 (ENSCSAG00000019606)	WIPF3 (ENSCSAG00000014442)	SCRN1 (ENSCSAG00000014463)	FKBP14 (ENSCSAG00000014478)	PLEKHA8 (ENSCSAG00000014494)	MTURN (ENSCSAG00000014501)	ZNRF2 (ENSCSAG00000014505)	NOD1 (ENSCSAG00000014514)
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT01030000234542.b.a.a.a.b.a.b.c.a	ENSGT00940000167156	ENSGT00940000153395.a.rb.b.b.a	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00420000029792.r	ENSGT00940000155255 #25	ENSGT00940000163122	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00860000135709 #33	ENSGT00950000183087.A.a.b.a.g.b.b	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00910000147051	ENSGT00940000160267	ENSGT00390000013474.b.b.a.b
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000153299.c.b.a.b.a.a.a	ENSGT01030000234542.b.a.a.a.b.a.b.c.a	ENSGT00940000167156	ENSGT00940000153395.a.rb.b.b.a	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00940000163122	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00860000135709 #33	ENSGT00950000183087.A.a.b.a.g.b.b	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00910000147051	ENSGT00940000160267	ENSGT00390000013474.b.b.a.b	ENSGT00940000157858
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000153395.a.rb.b.b.a	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00860000135709 #33	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01100000263493.a.b.b.a.a.b.b.a.a.a.a.a.a.b.b.b ##35	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000159017.a.b	ENSGT00910000147051	ENSGT00940000160267	ENSGT00390000013474.b.b.a.b	ENSGT00940000157858
Rhesus	MODERN SPECIES	13	HNRNPA2B1 (ENSMMUG00000003619)	CBX3 (ENSMMUG00000040322)	SNX10 (ENSMMUG00000023230)	SKAP2 (ENSMMUG00000018544) #7	HOXA1 (ENSMMUG00000012807) #11	HOXA2 (ENSMMUG00000054649) #12	HOXA3 (ENSMMUG00000051572) #13	HOXA4 (ENSMMUG00000040874) #14	HOXA5 (ENSMMUG00000061471) #15	HOXA6 (ENSMMUG00000061724) #16	HOXA7 (ENSMMUG00000013458) #17	HOXA9 (ENSMMUG00000013459) #18	HOXA10 (ENSMMUG00000051571) #19	HOXA11 (ENSMMUG00000055708) #20	HOXA13 (ENSMMUG00000013463) #21	EVX1 (ENSMMUG00000056313) #22	ENSMMUG00000037517	HIBADH (ENSMMUG00000023134) #25	TAX1BP1 (ENSMMUG00000022454) #31	JAZF1 (ENSMMUG00000042360) #32	ENSMMUG00000046993 #33	CREB5 (ENSMMUG00000039317) #34	TRIL (ENSMMUG00000020183) #36	CPVL (ENSMMUG00000020184) #37	ENSMMUG00000059764 ##35	ENSMMUG00000053302	CHN2 (ENSMMUG00000008329)	PRR15 (ENSMMUG00000064213)	ENSMMUG00000062652	ENSMMUG00000050459 ##23	ENSMMUG00000065141
Crab-eating macaque	MODERN SPECIES	13	CBX3 (ENSMFAG00000000399)	SNX10 (ENSMFAG00000000672)	SKAP2 (ENSMFAG00000041066) #7	ENSMFAG00000025170	HOXA1 (ENSMFAG00000034381) #11	HOXA2 (ENSMFAG00000040635) #12	HOXA3 (ENSMFAG00000053957) #13	HOXA4 (ENSMFAG00000038265) #14	HOXA5 (ENSMFAG00000061184) #15	HOXA6 (ENSMFAG00000030075) #16	HOXA7 (ENSMFAG00000058004) #17	HOXA9 (ENSMFAG00000041407) #18	HOXA10 (ENSMFAG00000000953) #19	HOXA11 (ENSMFAG00000044467) #20	HOXA13 (ENSMFAG00000039716) #21	EVX1 (ENSMFAG00000056940) #22	ENSMFAG00000053283	ENSMFAG00000060028	HIBADH (ENSMFAG00000035636) #25	TAX1BP1 (ENSMFAG00000034182) #31	JAZF1 (ENSMFAG00000034641) #32	ENSMFAG00000047227 #33	CREB5 (ENSMFAG00000037539) #34	TRIL (ENSMFAG00000028905) #36	CPVL (ENSMFAG00000000559) #37	ENSMFAG00000050922 ##35	CHN2 (ENSMFAG00000033189)	PRR15 (ENSMFAG00000023520)	ENSMFAG00000062462	ENSMFAG00000048158	WIPF3 (ENSMFAG00000036122)
Pig-tailed macaque	MODERN SPECIES	534	SKAP2 (ENSMNEG00000029161) #7	ENSMNEG00000045177	ENSMNEG00000040022	ENSMNEG00000027963	HOXA1 (ENSMNEG00000043463) #11	HOXA2 (ENSMNEG00000028148) #12	HOXA3 (ENSMNEG00000045278) #13	HOXA4 (ENSMNEG00000038108) #14	HOXA5 (ENSMNEG00000041820) #15	HOXA6 (ENSMNEG00000013443) #16	HOXA7 (ENSMNEG00000013840) #17	HOXA9 (ENSMNEG00000035910) #18	HOXA10 (ENSMNEG00000032276) #19	HOXA11 (ENSMNEG00000030730) #20	HOXA13 (ENSMNEG00000043469) #21	EVX1 (ENSMNEG00000029237) #22	HIBADH (ENSMNEG00000031307) #25	ENSMNEG00000043622	TAX1BP1 (ENSMNEG00000030958) #31	JAZF1 (ENSMNEG00000035073) #32	ENSMNEG00000028508	CREB5 (ENSMNEG00000034055) #34	TRIL (ENSMNEG00000004465) #36	CPVL (ENSMNEG00000031185) #37	CHN2 (ENSMNEG00000034226)	PRR15 (ENSMNEG00000011732)	ENSMNEG00000000853	WIPF3 (ENSMNEG00000028373)	SCRN1 (ENSMNEG00000002956)	PLEKHA8 (ENSMNEG00000010179)	FKBP14 (ENSMNEG00000038941)
Cercopithecinae_b	ANCESTRAL SPECIES	11	ENSGT00940000167156	ENSGT00940000153395.a.rb.b.b.a	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00420000029792.r	ENSGT00940000155255 #25	ENSGT00940000163122	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a.o	ENSGT00940000154534.b.b	ENSGT00910000147051	ENSGT00940000160267	ENSGT00390000013474.b.b.b	ENSGT00940000157858	ENSGT00940000157288
Olive baboon	MODERN SPECIES	14	ENSPANG00000031037	SNX10 (ENSPANG00000006089)	SKAP2 (ENSPANG00000006185) #7	MAD2L1 (ENSPANG00000004063)	HOXA1 (ENSPANG00000003403) #11	HOXA2 (ENSPANG00000015067) #12	HOXA3 (ENSPANG00000025912) #13	HOXA4 (ENSPANG00000045376) #14	HOXA5 (ENSPANG00000009594) #15	HOXA6 (ENSPANG00000013799) #16	HOXA7 (ENSPANG00000029246) #17	HOXA9 (ENSPANG00000025913) #18	HOXA10 (ENSPANG00000021024)	HOXA11 (ENSPANG00000026298) #20	HOXA13 (ENSPANG00000030952) #21	EVX1 (ENSPANG00000010753) #22	SNX6 (ENSPANG00000045776)	ENSPANG00000037608	HIBADH (ENSPANG00000007147) #25	TAX1BP1 (ENSPANG00000025183) #31	JAZF1 (ENSPANG00000006254) #32	ENSPANG00000044199 #33	ENSPANG00000045027	CREB5 (ENSPANG00000025914) #34	TRIL (ENSPANG00000034493) #36	CPVL (ENSPANG00000006146) #37	CHN2 (ENSPANG00000023717)	ENSPANG00000045790	ENSPANG00000046085	PRR15 (ENSPANG00000005817)	ENSPANG00000015023
Cercopithecinae_d	ANCESTRAL SPECIES	10	ENSGT01030000234542.b.a.a.a.b.a.b.c.a	ENSGT00940000167156	ENSGT00940000153395.a.rb.b.b.a	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00420000029792.r	ENSGT00940000155255 #25	ENSGT00940000163122	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a.o	ENSGT00940000154534.b.b	ENSGT00910000147051	ENSGT00940000160267	ENSGT00390000013474.b.b.b	ENSGT00940000157858	ENSGT00940000157288
Drill	MODERN SPECIES	322	ENSMLEG00000041406	SKAP2 (ENSMLEG00000044388) #7	ENSMLEG00000044382	ENSMLEG00000029093	HOXA1 (ENSMLEG00000035357) #11	HOXA2 (ENSMLEG00000028127) #12	ENSMLEG00000033218 #14	HOXA3 (ENSMLEG00000039968) #13	HOXA5 (ENSMLEG00000032881) #15	HOXA6 (ENSMLEG00000043981) #16	HOXA7 (ENSMLEG00000043725) #17	HOXA9 (ENSMLEG00000044371) #18	HOXA10 (ENSMLEG00000040709) #19	HOXA11 (ENSMLEG00000036444) #20	ENSMLEG00000005797 #21	EVX1 (ENSMLEG00000036235) #22	ENSMLEG00000015804	HIBADH (ENSMLEG00000029648) #25	ENSMLEG00000035158	TAX1BP1 (ENSMLEG00000014126) #31	JAZF1 (ENSMLEG00000036373) #32	CREB5 (ENSMLEG00000039039) #34	TRIL (ENSMLEG00000032070) #36	CPVL (ENSMLEG00000041505) #37	CHN2 (ENSMLEG00000038612)	PRR15 (ENSMLEG00000025853)	ENSMLEG00000030247	ENSMLEG00000009545	WIPF3 (ENSMLEG00000043804)	SCRN1 (ENSMLEG00000037891)	FKBP14 (ENSMLEG00000033829)
Sooty mangabey	MODERN SPECIES	98	ENSCATG00000012253	ENSCATG00000033949	ENSCATG00000036904	HOXA1 (ENSCATG00000034436) #11	HOXA2 (ENSCATG00000033672) #12	HOXA3 (ENSCATG00000035121) #13	HOXA4 (ENSCATG00000029977) #14	HOXA7 (ENSCATG00000032186) #17	HOXA5 (ENSCATG00000043876) #15	HOXA6 (ENSCATG00000035243) #16	HOXA9 (ENSCATG00000042075) #18	HOXA10 (ENSCATG00000044959) #19	HOXA11 (ENSCATG00000001552) #20	ENSCATG00000034918	HOXA13 (ENSCATG00000037385) #21	EVX1 (ENSCATG00000040260) #22	ENSCATG00000000896	HIBADH (ENSCATG00000041726) #25	ENSCATG00000040606	TAX1BP1 (ENSCATG00000040940) #31	JAZF1 (ENSCATG00000039839) #32	CREB5 (ENSCATG00000039237) #34	TRIL (ENSCATG00000017105) #36	CPVL (ENSCATG00000000641) #37	CHN2 (ENSCATG00000038903)	PRR15 (ENSCATG00000017757)	ENSCATG00000044464	WIPF3 (ENSCATG00000040321)	SCRN1 (ENSCATG00000043113)	PLEKHA8 (ENSCATG00000029385)	FKBP14 (ENSCATG00000031169)
Rhinopithecus	ANCESTRAL SPECIES	285				ENSGT00940000153395.a.rb.b	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00940000163122	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00390000018173.p	ENSGT00910000148091
Golden snub-nosed monkey	MODERN SPECIES	2662		ENSRROG00000034808	ENSRROG00000044295	ENSRROG00000015544	HOXA1 (ENSRROG00000042817) #11	HOXA2 (ENSRROG00000043307) #12	HOXA3 (ENSRROG00000037793) #13	ENSRROG00000038872 #14	HOXA5 (ENSRROG00000027924) #15	HOXA6 (ENSRROG00000036583) #16	HOXA7 (ENSRROG00000031603) #17	HOXA9 (ENSRROG00000027298) #18	HOXA10 (ENSRROG00000035720) #19	HOXA11 (ENSRROG00000030206) #20	HOXA13 (ENSRROG00000033374) #21	EVX1 (ENSRROG00000044650) #22	HIBADH (ENSRROG00000019528) #25	ENSRROG00000037969	TAX1BP1 (ENSRROG00000039650) #31	JAZF1 (ENSRROG00000034561) #32	ENSRROG00000030778	ENSRROG00000032194	ENSRROG00000037287	CREB5 (ENSRROG00000032841) #34
Black snub-nosed monkey	MODERN SPECIES	683						HOXA1 (ENSRBIG00000038056) #11	HOXA2 (ENSRBIG00000010605) #12	HOXA3 (ENSRBIG00000029100) #13	ENSRBIG00000041474 #14	HOXA5 (ENSRBIG00000036351) #15	HOXA6 (ENSRBIG00000028174) #16	HOXA7 (ENSRBIG00000011060) #17	HOXA9 (ENSRBIG00000038074) #18	HOXA10 (ENSRBIG00000031294) #19	HOXA11 (ENSRBIG00000005197) #20	EVX1 (ENSRBIG00000034400) #22	ENSRBIG00000023649 #25	ENSRBIG00000037865	TAX1BP1 (ENSRBIG00000033739) #31	JAZF1 (ENSRBIG00000028304) #32	ENSRBIG00000041655	ENSRBIG00000031592	CREB5 (ENSRBIG00000039541) #34
Tarsier	MODERN SPECIES	5454						HOXA1 (ENSTSYG00000036930) #11	HOXA2 (ENSTSYG00000008311) #12	HOXA3 (ENSTSYG00000036893) #13	ENSTSYG00000035948 #14	HOXA5 (ENSTSYG00000036293) #15	HOXA6 (ENSTSYG00000007233) #16	HOXA9 (ENSTSYG00000031784) #18	ENSTSYG00000037137	HOXA11 (ENSTSYG00000006241) #20	HOXA13 (ENSTSYG00000036597) #21	ENSTSYG00000034876 #22	HIBADH (ENSTSYG00000037556) #25
Strepsirrhini	ANCESTRAL SPECIES	9	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007.c	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Lemuriformes	ANCESTRAL SPECIES	4	ENSGT00940000153305.c.e.b	ENSGT00940000156007.c	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Lemuriformes_a	ANCESTRAL SPECIES	66	ENSGT00940000153305.c.e.b	ENSGT00940000156007.c	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Greater bamboo lemur	MODERN SPECIES	586	HNRNPA2B1 (ENSPSMG00000014452)	ENSPSMG00000014512	SNX10 (ENSPSMG00000014541)	SKAP2 (ENSPSMG00000014602) #7	HOXA1 (ENSPSMG00000014634) #11	HOXA2 (ENSPSMG00000014668) #12	HOXA3 (ENSPSMG00000014673) #13	HOXA5 (ENSPSMG00000014678) #15	HOXA6 (ENSPSMG00000014685) #16	HOXA7 (ENSPSMG00000014695) #17	HOXA9 (ENSPSMG00000014704) #18	ENSPSMG00000014712	ENSPSMG00000014718	HOXA11 (ENSPSMG00000014731) #20	HOXA13 (ENSPSMG00000014769) #21	EVX1 (ENSPSMG00000014785) #22	HIBADH (ENSPSMG00000014819) #25	TAX1BP1 (ENSPSMG00000015046) #31	CREB5 (ENSPSMG00000015364) #34	TRIL (ENSPSMG00000015395) #36	CPVL (ENSPSMG00000015408) #37	CHN2 (ENSPSMG00000015549)	PRR15 (ENSPSMG00000015605)	SCRN1 (ENSPSMG00000015640)	FKBP14 (ENSPSMG00000015651)	PLEKHA8 (ENSPSMG00000015863)	MTURN (ENSPSMG00000015941)	ZNRF2 (ENSPSMG00000015951)	ENSPSMG00000015960	NOD1 (ENSPSMG00000016010)	GGCT (ENSPSMG00000016046)
Coquerels sifaka	MODERN SPECIES	205	ENSPCOG00000006764	SNX10 (ENSPCOG00000023211)	SKAP2 (ENSPCOG00000000688) #7	ENSPCOG00000023631	HOXA1 (ENSPCOG00000025369) #11	HOXA2 (ENSPCOG00000008813) #12	HOXA3 (ENSPCOG00000025444) #13	HOXA4 (ENSPCOG00000008248) #14	HOXA5 (ENSPCOG00000020367) #15	HOXA6 (ENSPCOG00000019088) #16	HOXA7 (ENSPCOG00000018610) #17	HOXA9 (ENSPCOG00000019455) #18	HOXA10 (ENSPCOG00000015186) #19	HOXA11 (ENSPCOG00000019148) #20	HOXA13 (ENSPCOG00000019940) #21	EVX1 (ENSPCOG00000024268) #22	HIBADH (ENSPCOG00000013985) #25	TAX1BP1 (ENSPCOG00000026109) #31	JAZF1 (ENSPCOG00000021884) #32	CREB5 (ENSPCOG00000023261) #34	CPVL (ENSPCOG00000028457) #37	CHN2 (ENSPCOG00000016056)	WIPF3 (ENSPCOG00000014419)	SCRN1 (ENSPCOG00000016737)	FKBP14 (ENSPCOG00000015275)	PLEKHA8 (ENSPCOG00000015946)	MTURN (ENSPCOG00000017910)	ZNRF2 (ENSPCOG00000021393)	NOD1 (ENSPCOG00000028472)	GGCT (ENSPCOG00000019077)	GARS1 (ENSPCOG00000008887)
Mouse lemur	MODERN SPECIES	2	ENSMICG00000030570	CBX3 (ENSMICG00000033535)	SNX10 (ENSMICG00000036618)	SKAP2 (ENSMICG00000000466) #7	ENSMICG00000030368	HOXA1 (ENSMICG00000041792) #11	HOXA2 (ENSMICG00000047950) #12	HOXA3 (ENSMICG00000030351) #13	ENSMICG00000046352	HOXA5 (ENSMICG00000046770) #15	HOXA7 (ENSMICG00000028330) #17	HOXA9 (ENSMICG00000045382) #18	HOXA10 (ENSMICG00000027113) #19	HOXA11 (ENSMICG00000033824) #20	HOXA13 (ENSMICG00000043155) #21	EVX1 (ENSMICG00000031887) #22	ENSMICG00000045251	TAX1BP1 (ENSMICG00000009923) #31	JAZF1 (ENSMICG00000009941) #32	CREB5 (ENSMICG00000007967) #34	CPVL (ENSMICG00000037854) #37	CHN2 (ENSMICG00000008142)	WIPF3 (ENSMICG00000012182)	SCRN1 (ENSMICG00000012191)	FKBP14 (ENSMICG00000036409)	PLEKHA8 (ENSMICG00000012195)	MTURN (ENSMICG00000007254)	ZNRF2 (ENSMICG00000045789)	NOD1 (ENSMICG00000012125)	GGCT (ENSMICG00000012142)	GARS1 (ENSMICG00000046006)
Bushbaby	MODERN SPECIES	143	ENSOGAG00000015353	ENSOGAG00000016583	ENSOGAG00000004065	SKAP2 (ENSOGAG00000012366) #7	HOXA1 (ENSOGAG00000012370) #11	HOXA2 (ENSOGAG00000012372) #12	HOXA3 (ENSOGAG00000027664) #13	HOXA4 (ENSOGAG00000028670) #14	HOXA5 (ENSOGAG00000031153) #15	HOXA6 (ENSOGAG00000012384) #16	HOXA7 (ENSOGAG00000032482) #17	HOXA9 (ENSOGAG00000015000) #18	HOXA10 (ENSOGAG00000012385) #19	HOXA11 (ENSOGAG00000012389) #20	HOXA13 (ENSOGAG00000028983) #21	EVX1 (ENSOGAG00000031221) #22	HIBADH (ENSOGAG00000000425) #25	TAX1BP1 (ENSOGAG00000000427) #31	JAZF1 (ENSOGAG00000029759) #32	CREB5 (ENSOGAG00000010246) #34	TRIL (ENSOGAG00000033323) #36	CPVL (ENSOGAG00000000026) #37	CHN2 (ENSOGAG00000005418)	PRR15 (ENSOGAG00000026096)	WIPF3 (ENSOGAG00000028020)	SCRN1 (ENSOGAG00000011046)	FKBP14 (ENSOGAG00000011049)	PLEKHA8 (ENSOGAG00000011052)	MTURN (ENSOGAG00000031721)	ZNRF2 (ENSOGAG00000033366)	ENSOGAG00000027182
Euarchontoglires_A	ANCESTRAL SPECIES	23	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Glires	ANCESTRAL SPECIES	24	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Rodentia	ANCESTRAL SPECIES	12	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00460000041667	ENSGT00940000159017.a.a
Naked mole-rat female	MODERN SPECIES	5	ENSHGLG00000014772	ENSHGLG00000050650	SKAP2 (ENSHGLG00000042970) #7	ENSHGLG00000045030	ENSHGLG00000036434	HOXA1 (ENSHGLG00000018117) #11	HOXA2 (ENSHGLG00000017804) #12	HOXA3 (ENSHGLG00000046038) #13	HOXA4 (ENSHGLG00000048807) #14	HOXA5 (ENSHGLG00000016863) #15	ENSHGLG00000043027 #17	HOXA9 (ENSHGLG00000045326) #18	HOXA10 (ENSHGLG00000050027) #19	HOXA11 (ENSHGLG00000009266) #20	HOXA13 (ENSHGLG00000039960) #21	EVX1 (ENSHGLG00000005868) #22	HIBADH (ENSHGLG00000005354) #25	ENSHGLG00000047390	ENSHGLG00000016256 #31	JAZF1 (ENSHGLG00000049016) #32	ENSHGLG00000016063	CREB5 (ENSHGLG00000018417) #34	TRIL (ENSHGLG00000037451) #36	CPVL (ENSHGLG00000016195) #37	CHN2 (ENSHGLG00000033880)	ENSHGLG00000017765	PRR15 (ENSHGLG00000047965)	SCRN1 (ENSHGLG00000008257)	FKBP14 (ENSHGLG00000006567)	ENSHGLG00000007305	PLEKHA8 (ENSHGLG00000005404)
Hystricomorpha_a	ANCESTRAL SPECIES	41	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00460000041667	ENSGT00940000159017.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	39	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00460000041667	ENSGT00940000159017.a.a
Long-tailed chinchilla	MODERN SPECIES	117	ENSCLAG00000014058	ENSCLAG00000012267	ENSCLAG00000005337	SKAP2 (ENSCLAG00000006785) #7	HOXA1 (ENSCLAG00000014364) #11	HOXA2 (ENSCLAG00000016180) #12	HOXA3 (ENSCLAG00000006878) #13	ENSCLAG00000008251 #14	HOXA5 (ENSCLAG00000004908) #15	HOXA6 (ENSCLAG00000006012) #16	HOXA7 (ENSCLAG00000008671) #17	HOXA9 (ENSCLAG00000010294) #18	HOXA10 (ENSCLAG00000015066) #19	HOXA11 (ENSCLAG00000009905) #20	HOXA13 (ENSCLAG00000010361) #21	EVX1 (ENSCLAG00000010646) #22	HIBADH (ENSCLAG00000010236) #25	TAX1BP1 (ENSCLAG00000013263) #31	JAZF1 (ENSCLAG00000009988) #32	CREB5 (ENSCLAG00000011091) #34	TRIL (ENSCLAG00000018111) #36	CPVL (ENSCLAG00000009635) #37	CHN2 (ENSCLAG00000014307)	PRR15 (ENSCLAG00000010326)	WIPF3 (ENSCLAG00000011493)	SCRN1 (ENSCLAG00000010543)	FKBP14 (ENSCLAG00000010774)	PLEKHA8 (ENSCLAG00000011413)	MTURN (ENSCLAG00000011854)	ENSCLAG00000016063	ENSCLAG00000010973
Degu	MODERN SPECIES	56	ENSODEG00000019395	SKAP2 (ENSODEG00000008150) #7	ENSODEG00000009507	HOXA1 (ENSODEG00000008589) #11	HOXA2 (ENSODEG00000009002) #12	HOXA3 (ENSODEG00000009161) #13	ENSODEG00000007568	HOXA5 (ENSODEG00000007850) #15	HOXA6 (ENSODEG00000007928) #16	HOXA7 (ENSODEG00000008762) #17	HOXA9 (ENSODEG00000009347) #18	ENSODEG00000009545	ENSODEG00000009794 #19	HOXA11 (ENSODEG00000010282) #20	HOXA13 (ENSODEG00000007693) #21	EVX1 (ENSODEG00000007853) #22	HIBADH (ENSODEG00000010442) #25	ENSODEG00000007935	ENSODEG00000019519	ENSODEG00000011639	ENSODEG00000011321 #31	JAZF1 (ENSODEG00000009398) #32	CREB5 (ENSODEG00000008640) #34	TRIL (ENSODEG00000019862) #36	ENSODEG00000009470 #37	ENSODEG00000008241	CHN2 (ENSODEG00000008637)	PRR15 (ENSODEG00000019540)	ENSODEG00000019511	WIPF3 (ENSODEG00000007842)	SCRN1 (ENSODEG00000008733)
Guinea pig	MODERN SPECIES	44	HNRNPA2B1 (ENSCPOG00000036630)	CBX3 (ENSCPOG00000015168)	SNX10 (ENSCPOG00000006831)	ENSCPOG00000037875	SKAP2 (ENSCPOG00000000258) #7	HOXA1 (ENSCPOG00000037658) #11	HOXA2 (ENSCPOG00000034959) #12	HOXA3 (ENSCPOG00000030159) #13	ENSCPOG00000032985 #14	HOXA5 (ENSCPOG00000035800) #15	HOXA6 (ENSCPOG00000032757) #16	HOXA9 (ENSCPOG00000011365) #18	ENSCPOG00000031122	HOXA11 (ENSCPOG00000039723) #20	HOXA13 (ENSCPOG00000033640) #21	EVX1 (ENSCPOG00000011370) #22	HIBADH (ENSCPOG00000020159) #25	TAX1BP1 (ENSCPOG00000000826) #31	JAZF1 (ENSCPOG00000034687) #32	CREB5 (ENSCPOG00000013545) #34	TRIL (ENSCPOG00000024604) #36	CPVL (ENSCPOG00000013406) #37	CHN2 (ENSCPOG00000013533)	WIPF3 (ENSCPOG00000006935)	SCRN1 (ENSCPOG00000006943)	FKBP14 (ENSCPOG00000040393)	PLEKHA8 (ENSCPOG00000005025)	MTURN (ENSCPOG00000031591)	ENSCPOG00000027612	NOD1 (ENSCPOG00000014360)	GGCT (ENSCPOG00000024870)
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Marmotini	ANCESTRAL SPECIES	37	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.m #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000165512
Marmotini_b	ANCESTRAL SPECIES	26	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.n #25	ENSGT00940000155255.m #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Arctic ground squirrel	MODERN SPECIES	223	ENSUPAG00010017471	ENSUPAG00010017469	SNX10 (ENSUPAG00010017455)	SKAP2 (ENSUPAG00010017432) #7	HOXA1 (ENSUPAG00010017428) #11	HOXA2 (ENSUPAG00010017405) #12	HOXA3 (ENSUPAG00010017403) #13	HOXA4 (ENSUPAG00010017400) #14	HOXA5 (ENSUPAG00010017397) #15	HOXA6 (ENSUPAG00010017390) #16	HOXA7 (ENSUPAG00010017387) #17	HOXA9 (ENSUPAG00010017383) #18	ENSUPAG00010017375	HOXA11 (ENSUPAG00010017374) #20	HOXA13 (ENSUPAG00010017357) #21	EVX1 (ENSUPAG00010017335) #22
Squirrel	MODERN SPECIES	78	ENSSTOG00000006202	CBX3 (ENSSTOG00000006223)	SNX10 (ENSSTOG00000024131)	SKAP2 (ENSSTOG00000021247) #7	HOXA1 (ENSSTOG00000024209) #11	HOXA2 (ENSSTOG00000016362) #12	HOXA3 (ENSSTOG00000021230) #13	ENSSTOG00000024606 #14	HOXA5 (ENSSTOG00000011206) #15	HOXA6 (ENSSTOG00000022675) #16	HOXA7 (ENSSTOG00000011208) #17	HOXA9 (ENSSTOG00000028613) #18	ENSSTOG00000021212	HOXA11 (ENSSTOG00000022674) #20	HOXA13 (ENSSTOG00000029157) #21	EVX1 (ENSSTOG00000025642) #22	ENSSTOG00000004108 #25	TAX1BP1 (ENSSTOG00000003056) #31	JAZF1 (ENSSTOG00000005946) #32	CREB5 (ENSSTOG00000013279) #34	CPVL (ENSSTOG00000010505) #37	CHN2 (ENSSTOG00000002346)	PRR15 (ENSSTOG00000020339)	WIPF3 (ENSSTOG00000009012)	SCRN1 (ENSSTOG00000009029)	FKBP14 (ENSSTOG00000005235)	PLEKHA8 (ENSSTOG00000009052)	MTURN (ENSSTOG00000021099)	ENSSTOG00000034241	ENSSTOG00000033923	NOD1 (ENSSTOG00000022644)
Alpin marmot	MODERN SPECIES	26	ENSMMMG00000006360	SNX10 (ENSMMMG00000006398)	ENSMMMG00000006429 #7	ENSMMMG00000006435	HOXA1 (ENSMMMG00000006456) #11	HOXA2 (ENSMMMG00000006490) #12	HOXA3 (ENSMMMG00000006503) #13	ENSMMMG00000006511 #14	HOXA5 (ENSMMMG00000006523) #15	HOXA6 (ENSMMMG00000006535) #16	HOXA7 (ENSMMMG00000006545) #17	HOXA9 (ENSMMMG00000006550) #18	ENSMMMG00000006561	HOXA11 (ENSMMMG00000006566) #20	HOXA13 (ENSMMMG00000006593) #21	EVX1 (ENSMMMG00000006623) #22	HIBADH (ENSMMMG00000006642) #25	TAX1BP1 (ENSMMMG00000006653) #31	JAZF1 (ENSMMMG00000006695) #32	CREB5 (ENSMMMG00000006736) #34	TRIL (ENSMMMG00000006835) #36	CPVL (ENSMMMG00000006841) #37	CHN2 (ENSMMMG00000006900)	PRR15 (ENSMMMG00000007372)	WIPF3 (ENSMMMG00000007380)	SCRN1 (ENSMMMG00000007428)	FKBP14 (ENSMMMG00000007497)	ENSMMMG00000007508	PLEKHA8 (ENSMMMG00000007517)	MTURN (ENSMMMG00000007542)	ENSMMMG00000007598
Eurasian red squirrel	MODERN SPECIES	17	CBX3 (ENSSVLG00005011150)	ENSSVLG00005011185	SNX10 (ENSSVLG00005011242)	ENSSVLG00005011503 #7	HOXA1 (ENSSVLG00005011664) #11	HOXA3 (ENSSVLG00005011881) #13	HOXA4 (ENSSVLG00005011927) #14	HOXA5 (ENSSVLG00005011967) #15	HOXA6 (ENSSVLG00005012001) #16	HOXA7 (ENSSVLG00005012041) #17	HOXA9 (ENSSVLG00005012091) #18	HOXA10 (ENSSVLG00005012252) #19	HOXA11 (ENSSVLG00005012306) #20	ENSSVLG00005012350	HOXA13 (ENSSVLG00005012374) #21	EVX1 (ENSSVLG00005012472) #22	HIBADH (ENSSVLG00005012541) #25	TAX1BP1 (ENSSVLG00005012659) #31	JAZF1 (ENSSVLG00005012816) #32	ENSSVLG00005012873	ENSSVLG00005012905	ENSSVLG00005012960	CREB5 (ENSSVLG00005013014) #34	TRIL (ENSSVLG00005013079) #36	CPVL (ENSSVLG00005013200) #37	CHN2 (ENSSVLG00005013621)	PRR15 (ENSSVLG00005013762)	WIPF3 (ENSSVLG00005013843)	SCRN1 (ENSSVLG00005013986)	FKBP14 (ENSSVLG00005014087)	PLEKHA8 (ENSSVLG00005014153)
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Muroidea	ANCESTRAL SPECIES	8	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.o #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Chinese hamster chok1gshd	MODERN SPECIES	212	Cbx3 (ENSCGRG00001024311)	Snx10 (ENSCGRG00001006115)	Skap2 (ENSCGRG00001015578) #7	ENSCGRG00001016005	Hoxa1 (ENSCGRG00001018306) #11	Hoxa2 (ENSCGRG00001019226) #12	Hoxa3 (ENSCGRG00001023867) #13	Hoxa4 (ENSCGRG00001000481) #14	Hoxa5 (ENSCGRG00001001687) #15	Hoxa6 (ENSCGRG00001003922) #16	Hoxa7 (ENSCGRG00001019884) #17	Hoxa9 (ENSCGRG00001007287) #18	Hoxa10 (ENSCGRG00001012738) #19	Hoxa11 (ENSCGRG00001014980) #20	Hoxa13 (ENSCGRG00001017295) #21	Evx1 (ENSCGRG00001000887) #22	ENSCGRG00001006507 #25	Tax1bp1 (ENSCGRG00001012350) #31	Jazf1 (ENSCGRG00001016388) #32	ENSCGRG00001012730	Creb5 (ENSCGRG00001018702) #34	Tril (ENSCGRG00001006970) #36	Cpvl (ENSCGRG00001012752) #37	Chn2 (ENSCGRG00001019164)	Prr15 (ENSCGRG00001001455)	Wipf3 (ENSCGRG00001013250)	Scrn1 (ENSCGRG00001001373)	Fkbp14 (ENSCGRG00001009179)	Plekha8 (ENSCGRG00001012359)	Mturn (ENSCGRG00001020710)	Znrf2 (ENSCGRG00001004725)
Golden Hamster	MODERN SPECIES	822	4921507P07Rik (ENSMAUG00000007334)	Npvf (ENSMAUG00000006780)	ENSMAUG00000004168	Hnrnpa2b1 (ENSMAUG00000005706)	ENSMAUG00000004290	Snx10 (ENSMAUG00000003697)	ENSMAUG00000002622 #7	Hoxa5 (ENSMAUG00000002058) #15	Hoxa6 (ENSMAUG00000001166) #16	Hoxa3 (ENSMAUG00000001129) #13	Hoxa7 (ENSMAUG00000001017) #17	Hoxa9 (ENSMAUG00000000669) #18	Hoxa10 (ENSMAUG00000001122) #19	Hoxa11 (ENSMAUG00000001056) #20	Hoxa13 (ENSMAUG00000001019) #21	Evx1 (ENSMAUG00000000608) #22	ENSMAUG00000000446 #25	ENSMAUG00000000426 #31
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Northern American deer mouse	MODERN SPECIES	16	Cbx3 (ENSPEMG00000020155)	Snx10 (ENSPEMG00000005121)	Skap2 (ENSPEMG00000019639) #7	ENSPEMG00000027861	Hoxa1 (ENSPEMG00000020130) #11	Hoxa2 (ENSPEMG00000019520) #12	Hoxa3 (ENSPEMG00000028539) #13	ENSPEMG00000019740 #14	Hoxa5 (ENSPEMG00000029029) #15	Hoxa6 (ENSPEMG00000030268) #16	ENSPEMG00000025086	ENSPEMG00000020209 #18	ENSPEMG00000025887	Hoxa11 (ENSPEMG00000019890) #20	Hoxa13 (ENSPEMG00000024341) #21	Evx1 (ENSPEMG00000000503) #22	Hibadh (ENSPEMG00000004771) #25	Tax1bp1 (ENSPEMG00000030323) #31	Jazf1 (ENSPEMG00000013422) #32	Creb5 (ENSPEMG00000008456) #34	Tril (ENSPEMG00000014631) #36	Cpvl (ENSPEMG00000018828) #37	Chn2 (ENSPEMG00000021269)	Prr15 (ENSPEMG00000022428)	Wipf3 (ENSPEMG00000024262)	Scrn1 (ENSPEMG00000029796)	Fkbp14 (ENSPEMG00000024960)	Plekha8 (ENSPEMG00000010696)	Mturn (ENSPEMG00000030724)	ENSPEMG00000019334	Nod1 (ENSPEMG00000019408)
Prairie vole	MODERN SPECIES	94	Cbx3 (ENSMOCG00000008087)	Snx10 (ENSMOCG00000016046)	Skap2 (ENSMOCG00000017060) #7	Hoxa1 (ENSMOCG00000005031) #11	Hoxa2 (ENSMOCG00000019225) #12	ENSMOCG00000016584	Hoxa4 (ENSMOCG00000011933) #14	Hoxa5 (ENSMOCG00000012515) #15	Hoxa6 (ENSMOCG00000010245) #16	Hoxa3 (ENSMOCG00000004227) #13	Hoxa7 (ENSMOCG00000001247) #17	Hoxa9 (ENSMOCG00000017667) #18	Hoxa10 (ENSMOCG00000011516) #19	Hoxa11 (ENSMOCG00000004073) #20	Hoxa13 (ENSMOCG00000000460) #21	Evx1 (ENSMOCG00000001101) #22	Htr1a (ENSMOCG00000003283)	Rnf180 (ENSMOCG00000005501)	Rgs7bp (ENSMOCG00000008886)	ENSMOCG00000000487	Shisal2b (ENSMOCG00000017631)	Srek1ip1 (ENSMOCG00000018975)	Cwc27 (ENSMOCG00000001833)	Adamts6 (ENSMOCG00000013917)	Cenpk (ENSMOCG00000019943)	Ppwd1 (ENSMOCG00000000551)	Trim23 (ENSMOCG00000018771)	Trappc13 (ENSMOCG00000016517)	Sgtb (ENSMOCG00000019258)	Nln (ENSMOCG00000002226)	Erbin (ENSMOCG00000000147)
Murinae	ANCESTRAL SPECIES	4	ENSGT00940000153305.c.e.a	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Mus	ANCESTRAL SPECIES	20	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000168920	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000168920	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Mus_B	ANCESTRAL SPECIES	20	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000168920	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Mus_C	ANCESTRAL SPECIES	19	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000168920	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
spretus	MODERN SPECIES	15	MGP_SPRETEiJ_G0029380	Snx10 (MGP_SPRETEiJ_G0029381)	Skap2 (MGP_SPRETEiJ_G0029382) #7	Hoxa1 (MGP_SPRETEiJ_G0029383) #11	Hoxa2 (MGP_SPRETEiJ_G0029384) #12	MGP_SPRETEiJ_G0029385	Hoxa3 (MGP_SPRETEiJ_G0029386) #13	Hoxa4 (MGP_SPRETEiJ_G0029387) #14	Hoxa5 (MGP_SPRETEiJ_G0029388) #15	Hoxa6 (MGP_SPRETEiJ_G0029389) #16	Hoxa7 (MGP_SPRETEiJ_G0029390) #17	Hoxa9 (MGP_SPRETEiJ_G0029391) #18	Hoxa10 (MGP_SPRETEiJ_G0029392) #19	Hoxa11 (MGP_SPRETEiJ_G0029393) #20	MGP_SPRETEiJ_G0029394 #21	Evx1 (MGP_SPRETEiJ_G0029395) #22	Hibadh (MGP_SPRETEiJ_G0029396) #25	Tax1bp1 (MGP_SPRETEiJ_G0029397) #31	Jazf1 (MGP_SPRETEiJ_G0029398) #32	Creb5 (MGP_SPRETEiJ_G0029399) #34	Tril (MGP_SPRETEiJ_G0029400) #36	Cpvl (MGP_SPRETEiJ_G0029401) #37	Chn2 (MGP_SPRETEiJ_G0029402)	Prr15 (MGP_SPRETEiJ_G0029403)	MGP_SPRETEiJ_G0029404	Scrn1 (MGP_SPRETEiJ_G0029405)	Plekha8 (MGP_SPRETEiJ_G0029407)	Mturn (MGP_SPRETEiJ_G0029408)	Znrf2 (MGP_SPRETEiJ_G0029409)	Nod1 (MGP_SPRETEiJ_G0029410)	Ggct (MGP_SPRETEiJ_G0029411)
Steppe mouse	MODERN SPECIES	3410	Skap2 (ENSMSIG00000009994) #7	Hoxa1 (ENSMSIG00000009971) #11	Hoxa2 (ENSMSIG00000009914) #12	ENSMSIG00000009910	ENSMSIG00000009893	Hoxa3 (ENSMSIG00000009863) #13	Hoxa4 (ENSMSIG00000009874) #14	ENSMSIG00000009856 #15	Hoxa6 (ENSMSIG00000009850) #16	Hoxa7 (ENSMSIG00000009836) #17	Hoxa9 (ENSMSIG00000009832) #18	ENSMSIG00000009817	Hoxa11 (ENSMSIG00000009809) #20	ENSMSIG00000009764	ENSMSIG00000009733 #21	Evx1 (ENSMSIG00000009707) #22	ENSMSIG00000009698	Hibadh (ENSMSIG00000009672) #25	Tax1bp1 (ENSMSIG00000009618) #31	Jazf1 (ENSMSIG00000009609) #32	ENSMSIG00000009588 #34
Mouse	MODERN SPECIES	15	Hnrnpa2b1 (ENSMUSG00000004980)	Cbx3 (ENSMUSG00000029836)	Snx10 (ENSMUSG00000038301)	Skap2 (ENSMUSG00000059182) #7	Hoxa1 (ENSMUSG00000029844) #11	Hoxa2 (ENSMUSG00000014704) #12	Hoxa3 (ENSMUSG00000079560) #13	Hoxa4 (ENSMUSG00000000942) #14	Hoxa5 (ENSMUSG00000038253) #15	Hoxa6 (ENSMUSG00000043219) #16	Hoxa7 (ENSMUSG00000038236) #17	Hoxa9 (ENSMUSG00000038227) #18	Hoxa10 (ENSMUSG00000000938) #19	Hoxa11 (ENSMUSG00000038210) #20	Hoxa13 (ENSMUSG00000038203) #21	Evx1 (ENSMUSG00000005503) #22	Hibadh (ENSMUSG00000029776) #25	Tax1bp1 (ENSMUSG00000004535) #31	Jazf1 (ENSMUSG00000063568) #32	Creb5 (ENSMUSG00000053007) #34	Tril (ENSMUSG00000043496) #36	Cpvl (ENSMUSG00000052955) #37	Chn2 (ENSMUSG00000004633)	Prr15 (ENSMUSG00000045725)	Wipf3 (ENSMUSG00000086040)	Scrn1 (ENSMUSG00000019124)	Fkbp14 (ENSMUSG00000038074)	Plekha8 (ENSMUSG00000005225)	Mturn (ENSMUSG00000038065)	Znrf2 (ENSMUSG00000058446)	Nod1 (ENSMUSG00000038058)
Ryukyu mouse	MODERN SPECIES	15	MGP_CAROLIEiJ_G0028378	MGP_CAROLIEiJ_G0028379	Skap2 (MGP_CAROLIEiJ_G0028380) #7	Hoxa1 (MGP_CAROLIEiJ_G0028381) #11	Hoxa2 (MGP_CAROLIEiJ_G0028382) #12	MGP_CAROLIEiJ_G0028383	Hoxa3 (MGP_CAROLIEiJ_G0028384) #13	MGP_CAROLIEiJ_G0028385	Hoxa4 (MGP_CAROLIEiJ_G0028386) #14	Hoxa5 (MGP_CAROLIEiJ_G0028387) #15	Hoxa7 (MGP_CAROLIEiJ_G0028388) #17	Hoxa9 (MGP_CAROLIEiJ_G0028389) #18	Hoxa10 (MGP_CAROLIEiJ_G0028390) #19	Hoxa11 (MGP_CAROLIEiJ_G0028391) #20	Hoxa13 (MGP_CAROLIEiJ_G0028392) #21	Evx1 (MGP_CAROLIEiJ_G0028393) #22	Hibadh (MGP_CAROLIEiJ_G0028394) #25	Tax1bp1 (MGP_CAROLIEiJ_G0028395) #31	Jazf1 (MGP_CAROLIEiJ_G0028396) #32	Creb5 (MGP_CAROLIEiJ_G0028397) #34	Tril (MGP_CAROLIEiJ_G0028398) #36	Cpvl (MGP_CAROLIEiJ_G0028399) #37	Chn2 (MGP_CAROLIEiJ_G0028400)	Prr15 (MGP_CAROLIEiJ_G0028401)	Wipf3 (MGP_CAROLIEiJ_G0028402)	Scrn1 (MGP_CAROLIEiJ_G0028403)	MGP_CAROLIEiJ_G0028404	Plekha8 (MGP_CAROLIEiJ_G0028405)	Mturn (MGP_CAROLIEiJ_G0028406)	Znrf2 (MGP_CAROLIEiJ_G0028407)	Nod1 (MGP_CAROLIEiJ_G0028408)
Shrew mouse	MODERN SPECIES	11	MGP_PahariEiJ_G0022128	Snx10 (MGP_PahariEiJ_G0022129)	Skap2 (MGP_PahariEiJ_G0022130) #7	Hoxa1 (MGP_PahariEiJ_G0022131) #11	Hoxa2 (MGP_PahariEiJ_G0022132) #12	MGP_PahariEiJ_G0022133	Hoxa3 (MGP_PahariEiJ_G0022134) #13	Hoxa4 (MGP_PahariEiJ_G0022135) #14	Hoxa5 (MGP_PahariEiJ_G0022136) #15	Hoxa6 (MGP_PahariEiJ_G0022137) #16	Hoxa7 (MGP_PahariEiJ_G0022138) #17	Hoxa9 (MGP_PahariEiJ_G0022139) #18	Hoxa10 (MGP_PahariEiJ_G0022140) #19	Hoxa11 (MGP_PahariEiJ_G0022141) #20	Hoxa13 (MGP_PahariEiJ_G0022142) #21	Evx1 (MGP_PahariEiJ_G0022143) #22	Hibadh (MGP_PahariEiJ_G0022144) #25	Tax1bp1 (MGP_PahariEiJ_G0022145) #31	Jazf1 (MGP_PahariEiJ_G0022146) #32	Creb5 (MGP_PahariEiJ_G0022147) #34	Tril (MGP_PahariEiJ_G0022148) #36	Cpvl (MGP_PahariEiJ_G0022149) #37	Chn2 (MGP_PahariEiJ_G0022150)	Prr15 (MGP_PahariEiJ_G0022151)	Wipf3 (MGP_PahariEiJ_G0022152)	Scrn1 (MGP_PahariEiJ_G0022153)	Fkbp14 (MGP_PahariEiJ_G0022154)	Plekha8 (MGP_PahariEiJ_G0022155)	Mturn (MGP_PahariEiJ_G0022156)	Znrf2 (MGP_PahariEiJ_G0022157)	Nod1 (MGP_PahariEiJ_G0022158)
Rat	MODERN SPECIES	14	Snx10 (ENSRNOG00000011944)	ENSRNOG00000064847	Skap2 (ENSRNOG00000012228) #7	Hoxa1 (ENSRNOG00000005628) #11	Hoxa2 (ENSRNOG00000005968) #12	Hoxa3 (ENSRNOG00000006281) #13	Hoxa4 (ENSRNOG00000027365) #14	LOC103692127 (ENSRNOG00000047951) #15	LOC100911511 (ENSRNOG00000048917) #16	Hoxa7 (ENSRNOG00000046361) #17	Hoxa9 (ENSRNOG00000064322) #18	LOC100911668 (ENSRNOG00000065199) #19	Hoxa11 (ENSRNOG00000059870) #20	Hoxa11-as (ENSRNOG00000050564)	Hoxa13 (ENSRNOG00000057061) #21	Evx1 (ENSRNOG00000046734) #22	Hibadh (ENSRNOG00000008063) #25	ENSRNOG00000033407	ENSRNOG00000043170	AABR07060591.1 (ENSRNOG00000059195)	Tax1bp1 (ENSRNOG00000008393) #31	Jazf1 (ENSRNOG00000027026) #32	ENSRNOG00000068681	Creb5 (ENSRNOG00000008622) #34	Tril (ENSRNOG00000026941) #36	Cpvl (ENSRNOG00000009172) #37	Chn2 (ENSRNOG00000009411)	Prr15 (ENSRNOG00000009564)	Wipf3 (ENSRNOG00000009571)	Scrn1 (ENSRNOG00000009636)	Fkbp14 (ENSRNOG00000009886)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1152	Snx10 (ENSNGAG00000006392)	ENSNGAG00000010519	Skap2 (ENSNGAG00000016991) #7	Hoxa1 (ENSNGAG00000021363) #11	Hoxa2 (ENSNGAG00000014874) #12	Hoxa3 (ENSNGAG00000016765) #13	Hoxa4 (ENSNGAG00000022510) #14	Hoxa5 (ENSNGAG00000023140) #15	Hoxa6 (ENSNGAG00000012897) #16	Hoxa7 (ENSNGAG00000021697) #17	Hoxa9 (ENSNGAG00000016754) #18	ENSNGAG00000017228	ENSNGAG00000013764 #19	Hoxa11 (ENSNGAG00000023780) #20	Hoxa13 (ENSNGAG00000024186) #21	Evx1 (ENSNGAG00000001633) #22	Hibadh (ENSNGAG00000011196) #25	Tax1bp1 (ENSNGAG00000023119) #31	Jazf1 (ENSNGAG00000015532) #32	Creb5 (ENSNGAG00000024347) #34	Tril (ENSNGAG00000012621) #36	Cpvl (ENSNGAG00000024201) #37	Chn2 (ENSNGAG00000023838)	Prr15 (ENSNGAG00000019885)	Wipf3 (ENSNGAG00000018374)	Scrn1 (ENSNGAG00000023616)	Fkbp14 (ENSNGAG00000004013)	Plekha8 (ENSNGAG00000007347)	Mturn (ENSNGAG00000005393)	ENSNGAG00000022289	Nod1 (ENSNGAG00000023371)
Lesser Egyptian jerboa	MODERN SPECIES	49	ENSJJAG00000014919	Snx10 (ENSJJAG00000010400)	Skap2 (ENSJJAG00000009704) #7	Hoxa1 (ENSJJAG00000023032) #11	Hoxa2 (ENSJJAG00000021712) #12	ENSJJAG00000021517 #14	Hoxa5 (ENSJJAG00000011757) #15	Hoxa6 (ENSJJAG00000017936) #16	Hoxa3 (ENSJJAG00000014001) #13	Hoxa7 (ENSJJAG00000001940) #17	Hoxa9 (ENSJJAG00000003182) #18	ENSJJAG00000020521 #19	ENSJJAG00000013637	Hoxa11 (ENSJJAG00000018070) #20	ENSJJAG00000016730 #21	Evx1 (ENSJJAG00000022445) #22	Hibadh (ENSJJAG00000008176) #25	ENSJJAG00000023777 #31	Jazf1 (ENSJJAG00000023495) #32	Creb5 (ENSJJAG00000015436) #34	Tril (ENSJJAG00000019712) #36	Cpvl (ENSJJAG00000008362) #37	Chn2 (ENSJJAG00000023189)	Prr15 (ENSJJAG00000010733)	Wipf3 (ENSJJAG00000014772)	Scrn1 (ENSJJAG00000017248)	Fkbp14 (ENSJJAG00000019945)	Plekha8 (ENSJJAG00000013522)	Mturn (ENSJJAG00000019476)	ENSJJAG00000018369	Nod1 (ENSJJAG00000010878)
Kangaroo rat	MODERN SPECIES	395	ENSDORG00000005487	Snx10 (ENSDORG00000028812)	Skap2 (ENSDORG00000009682) #7	Hoxa1 (ENSDORG00000006311) #11	Hoxa2 (ENSDORG00000006312) #12	Hoxa4 (ENSDORG00000006316) #14	Hoxa3 (ENSDORG00000027678) #13	Hoxa5 (ENSDORG00000025053) #15	Hoxa6 (ENSDORG00000006319) #16	Hoxa7 (ENSDORG00000006321) #17	Hoxa9 (ENSDORG00000006323) #18	ENSDORG00000029112 #19	ENSDORG00000028643	Hoxa11 (ENSDORG00000006326) #20	Hoxa13 (ENSDORG00000006328) #21	Evx1 (ENSDORG00000024747) #22	Hibadh (ENSDORG00000002792) #25	ENSDORG00000030184 #31	Jazf1 (ENSDORG00000029172) #32	Creb5 (ENSDORG00000010434) #34	Tril (ENSDORG00000025363) #36	Cpvl (ENSDORG00000012786) #37	Chn2 (ENSDORG00000003980)	Prr15 (ENSDORG00000028597)	Wipf3 (ENSDORG00000004081)	ENSDORG00000028313	Scrn1 (ENSDORG00000004083)	Fkbp14 (ENSDORG00000013417)	Plekha8 (ENSDORG00000013418)	Mturn (ENSDORG00000029215)	ENSDORG00000023424
Lagomorpha	ANCESTRAL SPECIES	39	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00940000159017.a.a	ENSGT00940000157845	ENSGT00500000044921.b
Rabbit	MODERN SPECIES	1	ENSOCUG00000026859	ENSOCUG00000002464	SNX10 (ENSOCUG00000004744)	SKAP2 (ENSOCUG00000011330) #7	ENSOCUG00000022860	HOXA1 (ENSOCUG00000015215) #11	HOXA2 (ENSOCUG00000015205) #12	HOXA3 (ENSOCUG00000027405) #13	ENSOCUG00000015190 #14	HOXA5 (ENSOCUG00000029580) #15	HOXA7 (ENSOCUG00000015183) #17	HOXA9 (ENSOCUG00000020585) #18	HOXA10 (ENSOCUG00000029439) #19	HOXA11 (ENSOCUG00000015170) #20	HOXA13 (ENSOCUG00000024694) #21	EVX1 (ENSOCUG00000015159) #22	HIBADH (ENSOCUG00000010349) #25	TAX1BP1 (ENSOCUG00000012730) #31	JAZF1 (ENSOCUG00000012738) #32	ENSOCUG00000026115	CREB5 (ENSOCUG00000003639) #34	ENSOCUG00000026897 #36	CPVL (ENSOCUG00000016573) #37	ENSOCUG00000009401	PRR15 (ENSOCUG00000009403)	WIPF3 (ENSOCUG00000000802)	SCRN1 (ENSOCUG00000000804)	FKBP14 (ENSOCUG00000000805)	PLEKHA8 (ENSOCUG00000000807)	ENSOCUG00000036408	ENSOCUG00000036913
Pika	MODERN SPECIES	26					HOXA1 (ENSOPRG00000010385) #11	ENSOPRG00000010388	HOXA3 (ENSOPRG00000010401) #13	ENSOPRG00000010411	ENSOPRG00000010425	HOXA5 (ENSOPRG00000010429) #15	HOXA6 (ENSOPRG00000010431) #16	HOXA7 (ENSOPRG00000010447) #17	HOXA9 (ENSOPRG00000010452) #18	HOXA10 (ENSOPRG00000010473) #19	HOXA13 (ENSOPRG00000010498) #21	EVX1 (ENSOPRG00000010513) #22
Laurasiatheria	ANCESTRAL SPECIES	22	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000171365	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000159854 #22
Common shrew	MODERN SPECIES	553																EVX1 (ENSSARG00000003105) #22
Laurasiatheria_a	ANCESTRAL SPECIES	14	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000171365	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Laurasiatheria_b	ANCESTRAL SPECIES	14	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000171365	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Carnivora	ANCESTRAL SPECIES	15	ENSGT00940000156007	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000186003	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000171365	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044
Caniformia	ANCESTRAL SPECIES	11	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a.k #31	ENSGT00950000186003	ENSGT00950000183025.b.a.l #31	ENSGT00390000003635 #32	ENSGT00940000171365	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288
Caniformia_b	ANCESTRAL SPECIES	9	ENSGT00940000153305.c.e.a	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00930000152153	ENSGT00940000155255 #25	ENSGT00950000183025.b.a.k #31	ENSGT00950000186003	ENSGT00950000183025.b.a.l #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288
Mustelinae	ANCESTRAL SPECIES	9	ENSGT00940000153305.c.e.a	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a.k #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00940000159017.a.a	ENSGT00940000157845	ENSGT00500000044921.b
Ferret	MODERN SPECIES	251	NFE2L3 (ENSMPUG00000004526)	ENSMPUG00000004554	SNX10 (ENSMPUG00000004686)	SKAP2 (ENSMPUG00000004697) #7	HOXA1 (ENSMPUG00000004711) #11	HOXA2 (ENSMPUG00000004721) #12	HOXA3 (ENSMPUG00000004727) #13	HOXA4 (ENSMPUG00000004732) #14	HOXA5 (ENSMPUG00000004770) #15	HOXA6 (ENSMPUG00000004779) #16	HOXA7 (ENSMPUG00000004789) #17	HOXA9 (ENSMPUG00000004809) #18	HOXA10 (ENSMPUG00000004815) #19	HOXA11 (ENSMPUG00000004822) #20	HOXA13 (ENSMPUG00000004851) #21	EVX1 (ENSMPUG00000004859) #22	HIBADH (ENSMPUG00000004863) #25	TAX1BP1 (ENSMPUG00000004870) #31	JAZF1 (ENSMPUG00000004887) #32	CREB5 (ENSMPUG00000004897) #34	TRIL (ENSMPUG00000019606) #36	CPVL (ENSMPUG00000004911) #37	CHN2 (ENSMPUG00000004923)	PRR15 (ENSMPUG00000019608)	WIPF3 (ENSMPUG00000004936)	SCRN1 (ENSMPUG00000004979)	FKBP14 (ENSMPUG00000005010)	PLEKHA8 (ENSMPUG00000005019)	ENSMPUG00000005068	NOD1 (ENSMPUG00000005071)	GGCT (ENSMPUG00000005083)
American mink	MODERN SPECIES	24	HNRNPA2B1 (ENSNVIG00000012375)	ENSNVIG00000012362	SNX10 (ENSNVIG00000012303)	SKAP2 (ENSNVIG00000012244) #7	HOXA1 (ENSNVIG00000012214) #11	HOXA2 (ENSNVIG00000012184) #12	HOXA3 (ENSNVIG00000012162) #13	HOXA4 (ENSNVIG00000012149) #14	HOXA5 (ENSNVIG00000012142) #15	HOXA6 (ENSNVIG00000012136) #16	HOXA7 (ENSNVIG00000012126) #17	HOXA9 (ENSNVIG00000012124) #18	ENSNVIG00000012110	HOXA11 (ENSNVIG00000012100) #20	HOXA13 (ENSNVIG00000012062) #21	EVX1 (ENSNVIG00000012041) #22	HIBADH (ENSNVIG00000012020) #25	TAX1BP1 (ENSNVIG00000011815) #31	JAZF1 (ENSNVIG00000011775) #32	CREB5 (ENSNVIG00000011671) #34	TRIL (ENSNVIG00000011660) #36	CPVL (ENSNVIG00000011645) #37	CHN2 (ENSNVIG00000011534)	ENSNVIG00000011513	ENSNVIG00000011507	WIPF3 (ENSNVIG00000011443)	SCRN1 (ENSNVIG00000011369)	FKBP14 (ENSNVIG00000011355)	CG041 (ENSNVIG00000011260)	ENSNVIG00000011234	NOD1 (ENSNVIG00000011176)
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000159854 #22
Ursus	ANCESTRAL SPECIES																	ENSGT00940000159854 #22
American black bear	MODERN SPECIES	4590																EVX1 (ENSUAMG00000017020) #22
Canidae	ANCESTRAL SPECIES	22	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00930000152153	ENSGT00940000155255 #25	ENSGT00950000183025.b.a.k #31	ENSGT00390000003635 #32	ENSGT00940000171365	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044
Canis_lupus	ANCESTRAL SPECIES	24	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00570000080653	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.s #25	ENSGT00950000183025.b.a.k #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Dog	MODERN SPECIES	5	CBX3 (ENSCAFG00845011066)	SNX10 (ENSCAFG00845011117)	ENSCAFG00845011197	SKAP2 (ENSCAFG00845011216) #7	HOXA1 (ENSCAFG00845011289) #11	HOXA2 (ENSCAFG00845011307) #12	HOXA3 (ENSCAFG00845011325) #13	HOXA4 (ENSCAFG00845011344) #14	HOXA5 (ENSCAFG00845011359) #15	HOXA6 (ENSCAFG00845011371) #16	HOXA7 (ENSCAFG00845011385) #17	HOXA9 (ENSCAFG00845011412) #18	HOXA10 (ENSCAFG00845016148) #19	HOXA11 (ENSCAFG00845016202) #20	HOXA13 (ENSCAFG00845016263) #21	EVX1 (ENSCAFG00845016314) #22	ENSCAFG00845016422 #25	TAX1BP1 (ENSCAFG00845016842) #31	JAZF1 (ENSCAFG00845017060) #32	CREB5 (ENSCAFG00845017224) #34	TRIL (ENSCAFG00845017572) #36	CPVL (ENSCAFG00845017697) #37	CHN2 (ENSCAFG00845017921)	PRR15 (ENSCAFG00845018408)	WIPF3 (ENSCAFG00845018436)	SCRN1 (ENSCAFG00845018594)	PLEKHA8 (ENSCAFG00845018943)	MTURN (ENSCAFG00845019257)	ZNRF2 (ENSCAFG00845019324)	NOD1 (ENSCAFG00845019451)	GGCT (ENSCAFG00845019644)
Dingo	MODERN SPECIES	288	CBX3 (ENSCAFG00020003494)	SNX10 (ENSCAFG00020003504)	SKAP2 (ENSCAFG00020003533) #7	ENSCAFG00020003544	HOXA1 (ENSCAFG00020003564) #11	HOXA2 (ENSCAFG00020003576) #12	HOXA3 (ENSCAFG00020003578) #13	HOXA4 (ENSCAFG00020003583) #14	HOXA5 (ENSCAFG00020003593) #15	HOXA6 (ENSCAFG00020003596) #16	HOXA7 (ENSCAFG00020003603) #17	HOXA9 (ENSCAFG00020003604) #18	HOXA10 (ENSCAFG00020003608) #19	HOXA11 (ENSCAFG00020003610) #20	HOXA13 (ENSCAFG00020003636) #21	EVX1 (ENSCAFG00020003661) #22	ENSCAFG00020003671 #25	ENSCAFG00020003683	TAX1BP1 (ENSCAFG00020003692) #31	JAZF1 (ENSCAFG00020003862) #32	CREB5 (ENSCAFG00020003878) #34	TRIL (ENSCAFG00020003910) #36	CPVL (ENSCAFG00020003917) #37	CHN2 (ENSCAFG00020003953)	PRR15 (ENSCAFG00020004111)	WIPF3 (ENSCAFG00020004130)	SCRN1 (ENSCAFG00020004142)	FKBP14 (ENSCAFG00020004157)	PLEKHA8 (ENSCAFG00020004164)	MTURN (ENSCAFG00020004237)	ZNRF2 (ENSCAFG00020004252)
Felidae	ANCESTRAL SPECIES	13	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000186003	ENSGT00950000183025.b.a.i.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Panthera	ANCESTRAL SPECIES	1	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000186003	ENSGT00950000183025.b.a.i.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000186003	ENSGT00950000183025.b.a.i.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
leopard	MODERN SPECIES	9	HNRNPA2B1 (ENSPPRG00000019212)	CBX3 (ENSPPRG00000016142)	SNX10 (ENSPPRG00000014532)	SKAP2 (ENSPPRG00000012204) #7	HOXA1 (ENSPPRG00000011916) #11	HOXA2 (ENSPPRG00000011302) #12	HOXA3 (ENSPPRG00000010844) #13	HOXA4 (ENSPPRG00000010242) #14	HOXA5 (ENSPPRG00000009947) #15	HOXA6 (ENSPPRG00000009699) #16	HOXA7 (ENSPPRG00000009429) #17	HOXA9 (ENSPPRG00000009245) #18	HOXA10 (ENSPPRG00000009005) #19	HOXA11 (ENSPPRG00000008199) #20	HOXA13 (ENSPPRG00000007567) #21	EVX1 (ENSPPRG00000007045) #22	HIBADH (ENSPPRG00000006612) #25	ENSPPRG00000006269	ENSPPRG00000006141 #31	JAZF1 (ENSPPRG00000002975) #32	CREB5 (ENSPPRG00000002554) #34	TRIL (ENSPPRG00000018769) #36	CPVL (ENSPPRG00000022917) #37	CHN2 (ENSPPRG00000016803)	PRR15 (ENSPPRG00000018667)	WIPF3 (ENSPPRG00000011937)	SCRN1 (ENSPPRG00000011037)	FKBP14 (ENSPPRG00000009466)	PLEKHA8 (ENSPPRG00000008566)	MTURN (ENSPPRG00000005384)	ZNRF2 (ENSPPRG00000005250)
lion	MODERN SPECIES	2	ENSPLOG00000007132	CBX3 (ENSPLOG00000007256)	SNX10 (ENSPLOG00000007289)	SKAP2 (ENSPLOG00000007389) #7	HOXA1 (ENSPLOG00000007430) #11	HOXA2 (ENSPLOG00000007449) #12	HOXA3 (ENSPLOG00000007461) #13	HOXA4 (ENSPLOG00000007478) #14	HOXA5 (ENSPLOG00000007500) #15	HOXA6 (ENSPLOG00000007517) #16	HOXA7 (ENSPLOG00000007529) #17	HOXA9 (ENSPLOG00000007540) #18	ENSPLOG00000007559	HOXA11 (ENSPLOG00000007576) #20	HOXA13 (ENSPLOG00000007596) #21	EVX1 (ENSPLOG00000007612) #22	HIBADH (ENSPLOG00000007638) #25	ENSPLOG00000007659	ENSPLOG00000007719 #31	JAZF1 (ENSPLOG00000008017) #32	CREB5 (ENSPLOG00000008070) #34	TRIL (ENSPLOG00000008245) #36	CPVL (ENSPLOG00000008266) #37	CHN2 (ENSPLOG00000008386)	PRR15 (ENSPLOG00000008701)	WIPF3 (ENSPLOG00000008722)	SCRN1 (ENSPLOG00000008823)	FKBP14 (ENSPLOG00000008899)	PLEKHA8 (ENSPLOG00000008968)	MTURN (ENSPLOG00000009177)	ZNRF2 (ENSPLOG00000009209)
Cat	MODERN SPECIES	1	HNRNPA2B1 (ENSFCAG00000027765)	ENSFCAG00000034520	SNX10 (ENSFCAG00000041224)	SKAP2 (ENSFCAG00000025910) #7	HOXA1 (ENSFCAG00000007937) #11	HOXA2 (ENSFCAG00000007939) #12	HOXA3 (ENSFCAG00000028952) #13	HOXA4 (ENSFCAG00000035258) #14	HOXA5 (ENSFCAG00000045684) #15	HOXA6 (ENSFCAG00000034134) #16	HOXA7 (ENSFCAG00000022150) #17	HOXA9 (ENSFCAG00000036304) #18	HOXA10 (ENSFCAG00000025359) #19	HOXA11 (ENSFCAG00000007945) #20	HOXA13 (ENSFCAG00000041347) #21	EVX1 (ENSFCAG00000023523) #22	HIBADH (ENSFCAG00000022490) #25	ENSFCAG00000042564	TAX1BP1 (ENSFCAG00000006903) #31	JAZF1 (ENSFCAG00000023035) #32	CREB5 (ENSFCAG00000015784) #34	TRIL (ENSFCAG00000044042) #36	CPVL (ENSFCAG00000011225) #37	CHN2 (ENSFCAG00000008416)	WIPF3 (ENSFCAG00000043271)	SCRN1 (ENSFCAG00000037639)	PLEKHA8 (ENSFCAG00000002417)	MTURN (ENSFCAG00000045461)	ZNRF2 (ENSFCAG00000026521)	NOD1 (ENSFCAG00000012184)	GGCT (ENSFCAG00000009417)
Laurasiatheria_c	ANCESTRAL SPECIES	13	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Chiroptera	ANCESTRAL SPECIES	24	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Megabat	MODERN SPECIES	266			ENSPVAG00000002471	SKAP2 (ENSPVAG00000002474) #7	HOXA1 (ENSPVAG00000002476) #11	HOXA2 (ENSPVAG00000002484) #12	HOXA3 (ENSPVAG00000002486) #13	ENSPVAG00000002487	HOXA4 (ENSPVAG00000002489) #14	HOXA5 (ENSPVAG00000002490) #15	HOXA6 (ENSPVAG00000002491) #16	HOXA7 (ENSPVAG00000002494) #17	HOXA9 (ENSPVAG00000002497) #18	HOXA10 (ENSPVAG00000002499) #19	HOXA11 (ENSPVAG00000002500) #20	EVX1 (ENSPVAG00000002502) #22
Microchiroptera	ANCESTRAL SPECIES	24	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Microbat	MODERN SPECIES	989	ENSMLUG00000007578	CBX3 (ENSMLUG00000007591)	SNX10 (ENSMLUG00000000285)	ENSMLUG00000014485 #7	ENSMLUG00000023915 #7	HOXA1 (ENSMLUG00000014496) #11	HOXA2 (ENSMLUG00000014499) #12	HOXA3 (ENSMLUG00000014502) #13	ENSMLUG00000022220 ##14	HOXA5 (ENSMLUG00000028593) #15	HOXA6 (ENSMLUG00000014517) #16	HOXA7 (ENSMLUG00000008289) #17	ENSMLUG00000027272	HOXA11 (ENSMLUG00000008300) #20	HOXA13 (ENSMLUG00000008332) #21	EVX1 (ENSMLUG00000007499) #22	HIBADH (ENSMLUG00000008346) #25	TAX1BP1 (ENSMLUG00000013116) #31	JAZF1 (ENSMLUG00000013130) #32	CREB5 (ENSMLUG00000013799) #34	TRIL (ENSMLUG00000026172) #36	CPVL (ENSMLUG00000013805) #37	ENSMLUG00000013813	PRR15 (ENSMLUG00000007234)	WIPF3 (ENSMLUG00000022962)	SCRN1 (ENSMLUG00000007693)	FKBP14 (ENSMLUG00000007705)	PLEKHA8 (ENSMLUG00000007725)	MTURN (ENSMLUG00000007746)	ENSMLUG00000024304	NOD1 (ENSMLUG00000002033)
Greater horseshoe bat	MODERN SPECIES	12	CBX3 (ENSRFEG00010007556)	SNX10 (ENSRFEG00010007496)	ENSRFEG00010007479	SKAP2 (ENSRFEG00010007437) #7	HOXA1 (ENSRFEG00010007395) #11	HOXA2 (ENSRFEG00010007382) #12	HOXA3 (ENSRFEG00010007370) #13	HOXA4 (ENSRFEG00010007327) #14	HOXA5 (ENSRFEG00010007299) #15	HOXA6 (ENSRFEG00010007277) #16	HOXA7 (ENSRFEG00010007246) #17	HOXA9 (ENSRFEG00010007211) #18	ENSRFEG00010007175	HOXA11 (ENSRFEG00010007153) #20	HOXA13 (ENSRFEG00010007129) #21	EVX1 (ENSRFEG00010021329) #22	ENSRFEG00010021318	HIBADH (ENSRFEG00010021310) #25	TAX1BP1 (ENSRFEG00010021292) #31	JAZF1 (ENSRFEG00010021278) #32	CREB5 (ENSRFEG00010021242) #34	TRIL (ENSRFEG00010021231) #36	CPVL (ENSRFEG00010021218) #37	CHN2 (ENSRFEG00010021162)	ENSRFEG00010021129	WIPF3 (ENSRFEG00010021120)	SCRN1 (ENSRFEG00010021103)	FKBP14 (ENSRFEG00010021084)	PLEKHA8 (ENSRFEG00010021060)	ENSRFEG00010021050	MTURN (ENSRFEG00010021039)
Equus	ANCESTRAL SPECIES	13	ENSGT00950000182892.a.b.b	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Horse	MODERN SPECIES	25	ENSECAG00000058694	NFE2L3 (ENSECAG00000021973)	HNRNPA2B1 (ENSECAG00000000782)	SNX10 (ENSECAG00000013745)	SKAP2 (ENSECAG00000020343) #7	HOXA1 (ENSECAG00000021767) #11	HOXA2 (ENSECAG00000000451) #12	HOXA3 (ENSECAG00000022055) #13	HOXA5 (ENSECAG00000000461) #15	HOXA6 (ENSECAG00000000575) #16	HOXA7 (ENSECAG00000054772) #17	HOXA9 (ENSECAG00000054482) #18	HOXA10 (ENSECAG00000012577) #19	HOXA11 (ENSECAG00000058817) #20	HOXA13 (ENSECAG00000038185) #21	EVX1 (ENSECAG00000014337) #22	HIBADH (ENSECAG00000016863) #25	ENSECAG00000054721	TAX1BP1 (ENSECAG00000001911) #31	JAZF1 (ENSECAG00000016817) #32	ENSECAG00000055789 #34	CREB5 (ENSECAG00000020180) #34	TRIL (ENSECAG00000020808) #36	CPVL (ENSECAG00000024795) #37	CHN2 (ENSECAG00000012830)	WIPF3 (ENSECAG00000022875)	SCRN1 (ENSECAG00000023241)	FKBP14 (ENSECAG00000024710)	PLEKHA8 (ENSECAG00000007737)	ENSECAG00000038623	ZNRF2 (ENSECAG00000013800)
Donkey	MODERN SPECIES		ENSEASG00005022095	NFE2L3 (ENSEASG00005022104)	HNRNPA2B1 (ENSEASG00005022108)	CBX3 (ENSEASG00005022119)	SNX10 (ENSEASG00005022123)	SKAP2 (ENSEASG00005022133) #7	HOXA1 (ENSEASG00005030120) #11	HOXA2 (ENSEASG00005033684) #12	HOXA3 (ENSEASG00005035791) #13	HOXA5 (ENSEASG00005034554) #15	ENSEASG00005028567 #17	ENSEASG00005022172 #18	HOXA10 (ENSEASG00005022176) #19	HOXA11 (ENSEASG00005022180) #20	HOXA13 (ENSEASG00005022194) #21	EVX1 (ENSEASG00005000033) #22	HIBADH (ENSEASG00005000063) #25	ENSEASG00005000084	ENSEASG00005000155 #31	JAZF1 (ENSEASG00005024824) #32	CREB5 (ENSEASG00005000178) #34	TRIL (ENSEASG00005026075) #36	CPVL (ENSEASG00005000218) #37	CHN2 (ENSEASG00005000230)	PRR15 (ENSEASG00005027816)	SCRN1 (ENSEASG00005000315)	FKBP14 (ENSEASG00005000321)	PLEKHA8 (ENSEASG00005000323)	MTURN (ENSEASG00005024315)	ZNRF2 (ENSEASG00005000332)	NOD1 (ENSEASG00005000357)
Artiodactyla	ANCESTRAL SPECIES	11	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Suina	ANCESTRAL SPECIES	19	ENSGT00940000154431.e.b	ENSGT00940000153305.c.f	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Pig	MODERN SPECIES	9	NFE2L3 (ENSSSCG00000026894)	ENSSSCG00000036350	CBX3 (ENSSSCG00000016711)	SNX10 (ENSSSCG00000037598)	SKAP2 (ENSSSCG00000016708) #7	HOXA1 (ENSSSCG00000016707) #11	HOXA2 (ENSSSCG00000016706) #12	HOXA3 (ENSSSCG00000016705) #13	ENSSSCG00000016704	HOXA5 (ENSSSCG00000016703) #15	HOXA7 (ENSSSCG00000016701) #17	HOXA9 (ENSSSCG00000028997) #18	HOXA10 (ENSSSCG00000021204) #19	HOXA11 (ENSSSCG00000016698) #20	HOXA13 (ENSSSCG00000062559) #21	EVX1 (ENSSSCG00000016696) #22	HIBADH (ENSSSCG00000016695) #25	TAX1BP1 (ENSSSCG00000016692) #31	JAZF1 (ENSSSCG00000016691) #32	CREB5 (ENSSSCG00000016690) #34	CPVL (ENSSSCG00000016688) #37	ENSSSCG00000060851	CHN2 (ENSSSCG00000016687)	PRR15 (ENSSSCG00000016686)	WIPF3 (ENSSSCG00000016685)	SCRN1 (ENSSSCG00000016684)	FKBP14 (ENSSSCG00000037575)	PLEKHA8 (ENSSSCG00000016682)	MTURN (ENSSSCG00000037158)	ENSSSCG00000054340	ZNRF2 (ENSSSCG00000037116)
Chacoan peccary	MODERN SPECIES	77	HNRNPA2B1 (ENSCWAG00000000378)	ENSCWAG00000000333	SNX10 (ENSCWAG00000000244)	SKAP2 (ENSCWAG00000000198) #7	HOXA1 (ENSCWAG00000000172) #11	HOXA2 (ENSCWAG00000000162) #12	HOXA3 (ENSCWAG00000000149) #13	ENSCWAG00000000132 #14	HOXA5 (ENSCWAG00000000120) #15	HOXA6 (ENSCWAG00000000104) #16	HOXA7 (ENSCWAG00000000085) #17	HOXA9 (ENSCWAG00000000059) #18	HOXA10 (ENSCWAG00000010088) #19	HOXA11 (ENSCWAG00000010061) #20	HOXA13 (ENSCWAG00000010027) #21	EVX1 (ENSCWAG00000009983) #22	HIBADH (ENSCWAG00000009934) #25	TAX1BP1 (ENSCWAG00000009701) #31	JAZF1 (ENSCWAG00000009634) #32	CREB5 (ENSCWAG00000009365) #34	TRIL (ENSCWAG00000009328) #36	CPVL (ENSCWAG00000009183) #37	ENSCWAG00000009158	CHN2 (ENSCWAG00000007934)	SCRN1 (ENSCWAG00000007734)	FKBP14 (ENSCWAG00000007700)	PLEKHA8 (ENSCWAG00000007664)	MTURN (ENSCWAG00000007643)	ZNRF2 (ENSCWAG00000007613)	NOD1 (ENSCWAG00000007590)	GGCT (ENSCWAG00000007523)
Artiodactyla_a	ANCESTRAL SPECIES	11	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Artiodactyla_b	ANCESTRAL SPECIES	11	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Pecora	ANCESTRAL SPECIES	11	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Yarkand deer	MODERN SPECIES	9	ENSCHYG00000008354	ENSCHYG00000008298	SNX10 (ENSCHYG00000008200)	SKAP2 (ENSCHYG00000008025) #7	HOXA1 (ENSCHYG00000007989) #11	HOXA2 (ENSCHYG00000007974) #12	HOXA3 (ENSCHYG00000007949) #13	HOXA4 (ENSCHYG00000007930) #14	HOXA5 (ENSCHYG00000007908) #15	HOXA6 (ENSCHYG00000007892) #16	HOXA7 (ENSCHYG00000007865) #17	HOXA9 (ENSCHYG00000007842) #18	ENSCHYG00000007809	HOXA11 (ENSCHYG00000007789) #20	HOXA13 (ENSCHYG00000007767) #21	EVX1 (ENSCHYG00000007735) #22	ENSCHYG00000007675 #25	ENSCHYG00000007648	TAX1BP1 (ENSCHYG00000007239) #31	JAZF1 (ENSCHYG00000007125) #32	CREB5 (ENSCHYG00000006881) #34	TRIL (ENSCHYG00000006856) #36	CPVL (ENSCHYG00000006755) #37	CHN2 (ENSCHYG00000006232)	WIPF3 (ENSCHYG00000006126)	SCRN1 (ENSCHYG00000006060)	FKBP14 (ENSCHYG00000006015)	ENSCHYG00000006007	PLEKHA8 (ENSCHYG00000005823)	ENSCHYG00000005766	ENSCHYG00000005709
Percora_a	ANCESTRAL SPECIES	11	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Siberian musk deer	MODERN SPECIES	87	ENSMMSG00000008126	CBX3 (ENSMMSG00000008333)	SNX10 (ENSMMSG00000008398)	SKAP2 (ENSMMSG00000008475) #7	HOXA1 (ENSMMSG00000008512) #11	HOXA2 (ENSMMSG00000008551) #12	HOXA3 (ENSMMSG00000008574) #13	HOXA4 (ENSMMSG00000008591) #14	HOXA5 (ENSMMSG00000008606) #15	HOXA6 (ENSMMSG00000008621) #16	HOXA7 (ENSMMSG00000008650) #17	HOXA9 (ENSMMSG00000008679) #18	HOXA10 (ENSMMSG00000008727) #19	HOXA11 (ENSMMSG00000008748) #20	HOXA13 (ENSMMSG00000008765) #21	EVX1 (ENSMMSG00000008787) #22	HIBADH (ENSMMSG00000008828) #25	TAX1BP1 (ENSMMSG00000008891) #31	JAZF1 (ENSMMSG00000009021) #32	ENSMMSG00000009066	CREB5 (ENSMMSG00000009091) #34	TRIL (ENSMMSG00000009241) #36	CPVL (ENSMMSG00000009268) #37	CHN2 (ENSMMSG00000009425)	PRR15 (ENSMMSG00000010370)	WIPF3 (ENSMMSG00000010392)	SCRN1 (ENSMMSG00000010472)	FKBP14 (ENSMMSG00000010546)	PLEKHA8 (ENSMMSG00000010578)	MTURN (ENSMMSG00000010670)	ZNRF2 (ENSMMSG00000010692)
Bovidae	ANCESTRAL SPECIES	12	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Caprinae	ANCESTRAL SPECIES	10	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q.e #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Rambouillet Sheep	MODERN SPECIES	20	ENSOARG00020000374	SNX10 (ENSOARG00020000354)	SKAP2 (ENSOARG00020000333) #7	HOXA1 (ENSOARG00020000312) #11	HOXA2 (ENSOARG00020000291) #12	HOXA3 (ENSOARG00020000280) #13	HOXA4 (ENSOARG00020000267) #14	HOXA5 (ENSOARG00020000251) #15	HOXA6 (ENSOARG00020000238) #16	HOXA7 (ENSOARG00020000223) #17	HOXA9 (ENSOARG00020000214) #18	ENSOARG00020000180	HOXA11 (ENSOARG00020000170) #20	ENSOARG00020000154	HOXA13 (ENSOARG00020000130) #21	EVX1 (ENSOARG00020014391) #22	ENSOARG00020014324 #25	ENSOARG00020014245	TAX1BP1 (ENSOARG00020013883) #31	JAZF1 (ENSOARG00020013785) #32	CREB5 (ENSOARG00020013276) #34	TRIL (ENSOARG00020013245) #36	CPVL (ENSOARG00020013107) #37	CHN2 (ENSOARG00020012268)	ENSOARG00020012214	PRR15 (ENSOARG00020012169)	WIPF3 (ENSOARG00020012033)	SCRN1 (ENSOARG00020011928)	FKBP14 (ENSOARG00020011890)	ENSOARG00020011867	PLEKHA8 (ENSOARG00020011769)
Goat	MODERN SPECIES	23	ENSCHIG00000022444	CBX3 (ENSCHIG00000010019)	SNX10 (ENSCHIG00000021478)	SKAP2 (ENSCHIG00000011784) #7	HOXA1 (ENSCHIG00000023757) #11	HOXA2 (ENSCHIG00000024428) #12	HOXA3 (ENSCHIG00000014179) #13	HOXA4 (ENSCHIG00000019699) #14	HOXA5 (ENSCHIG00000005534) #15	HOXA6 (ENSCHIG00000015611) #16	HOXA7 (ENSCHIG00000021947) #17	HOXA9 (ENSCHIG00000004716) #18	HOXA10 (ENSCHIG00000014836) #19	HOXA11 (ENSCHIG00000020568) #20	HOXA13 (ENSCHIG00000008199) #21	EVX1 (ENSCHIG00000015016) #22	ENSCHIG00000020370	ENSCHIG00000011333 #25	ENSCHIG00000020306	TAX1BP1 (ENSCHIG00000008769) #31	ENSCHIG00000017265	JAZF1 (ENSCHIG00000000484) #32	CREB5 (ENSCHIG00000017696) #34	TRIL (ENSCHIG00000009595) #36	CPVL (ENSCHIG00000015778) #37	CHN2 (ENSCHIG00000022390)	PRR15 (ENSCHIG00000010520)	WIPF3 (ENSCHIG00000017026)	SCRN1 (ENSCHIG00000023295)	FKBP14 (ENSCHIG00000014006)	PLEKHA8 (ENSCHIG00000022799)
Bovinae	ANCESTRAL SPECIES	8	ENSGT00390000017856.a #7	ENSGT00960000190781	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00930000152153	ENSGT00940000155255.q #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Bos	ANCESTRAL SPECIES	8	ENSGT00390000017856.a #7	ENSGT00960000190781	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00970000197801	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Bos_b	ANCESTRAL SPECIES	7	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00960000190781	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00970000197801	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Hybrid Bos Indicus	MODERN SPECIES	23	SNX10 (ENSBIXG00005015700)	ENSBIXG00005015618	SKAP2 (ENSBIXG00005002343) #7	ENSBIXG00005007546	HOXA1 (ENSBIXG00005015513) #11	HOXA2 (ENSBIXG00005015454) #12	HOXA3 (ENSBIXG00005015435) #13	HOXA4 (ENSBIXG00005015410) #14	HOXA5 (ENSBIXG00005015377) #15	HOXA6 (ENSBIXG00005002254) #16	HOXA7 (ENSBIXG00005015346) #17	HOXA9 (ENSBIXG00005015312) #18	HOXA10 (ENSBIXG00005015278) #19	HOXA11 (ENSBIXG00005015251) #20	HOXA13 (ENSBIXG00005015197) #21	EVX1 (ENSBIXG00005015162) #22	ENSBIXG00005015117 #25	TAX1BP1 (ENSBIXG00005015021) #31	JAZF1 (ENSBIXG00005002099) #32	CREB5 (ENSBIXG00005014739) #34	TRIL (ENSBIXG00005014551) #36	ENSBIXG00005014543	CPVL (ENSBIXG00005002017) #37	CHN2 (ENSBIXG00005014470)	ENSBIXG00005014373	PRR15 (ENSBIXG00005014364)	WIPF3 (ENSBIXG00005005634)	SCRN1 (ENSBIXG00005006217)	ENSBIXG00005014148	FKBP14 (ENSBIXG00005014140)	PLEKHA8 (ENSBIXG00005001831)
Cow	MODERN SPECIES	23	SNX10 (ENSBTAG00000001822)	SKAP2 (ENSBTAG00000005650) #7	ENSBTAG00000047863	HOXA1 (ENSBTAG00000013263) #11	HOXA2 (ENSBTAG00000008138) #12	HOXA4 (ENSBTAG00000001063) #14	HOXA3 (ENSBTAG00000008139) #13	HOXA5 (ENSBTAG00000012211) #15	HOXA6 (ENSBTAG00000024341) #16	HOXA7 (ENSBTAG00000001455) #17	HOXA9 (ENSBTAG00000053595) #18	ENSBTAG00000048562 #19	HOXA10 (ENSBTAG00000040082)	HOXA11 (ENSBTAG00000014738) #20	HOXA13 (ENSBTAG00000014735) #21	EVX1 (ENSBTAG00000020919) #22	HIBADH (ENSBTAG00000001036) #25	TAX1BP1 (ENSBTAG00000019020) #31	JAZF1 (ENSBTAG00000019024) #32	CREB5 (ENSBTAG00000018909) #34	TRIL (ENSBTAG00000024340) #36	CPVL (ENSBTAG00000007146) #37	ENSBTAG00000054573	CHN2 (ENSBTAG00000020931)	PRR15 (ENSBTAG00000045567)	WIPF3 (ENSBTAG00000016220)	SCRN1 (ENSBTAG00000016223)	FKBP14 (ENSBTAG00000007870)	PLEKHA8 (ENSBTAG00000000521)	MTURN (ENSBTAG00000052317)	ZNRF2 (ENSBTAG00000000260)
Bos_a	ANCESTRAL SPECIES	12	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00960000190781	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00970000197801	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Domestic yak	MODERN SPECIES	23	ENSBGRG00000001597	SNX10 (ENSBGRG00000001644)	SKAP2 (ENSBGRG00000001745) #7	ENSBGRG00000001956	HOXA1 (ENSBGRG00000001963) #11	HOXA2 (ENSBGRG00000001989) #12	HOXA3 (ENSBGRG00000001999) #13	HOXA4 (ENSBGRG00000002016) #14	HOXA5 (ENSBGRG00000002031) #15	HOXA6 (ENSBGRG00000002039) #16	HOXA7 (ENSBGRG00000002048) #17	HOXA9 (ENSBGRG00000002058) #18	hoxA10 (ENSBGRG00000002072)	HOXA11 (ENSBGRG00000002077) #20	HOXA13 (ENSBGRG00000002092) #21	EVX1 (ENSBGRG00000002117) #22	HIBADH (ENSBGRG00000002143) #25	TAX1BP1 (ENSBGRG00000002260) #31	JAZF1 (ENSBGRG00000002602) #32	CREB5 (ENSBGRG00000002665) #34	ENSBGRG00000002725	CPVL (ENSBGRG00000002765) #37	CHN2 (ENSBGRG00000002806)	ENSBGRG00000002866	WIPF3 (ENSBGRG00000002882)	SCRN1 (ENSBGRG00000002924)	FKBP14 (ENSBGRG00000002988)	PLEKHA8 (ENSBGRG00000003061)	ENSBGRG00000003339	ENSBGRG00000003342	ZNRF2 (ENSBGRG00000003362)
Wild yak	MODERN SPECIES	1550	SNX10 (ENSBMUG00000002905)	SKAP2 (ENSBMUG00000002819) #7	ENSBMUG00000002753	HOXA1 (ENSBMUG00000002735) #11	HOXA2 (ENSBMUG00000002681) #12	HOXA3 (ENSBMUG00000002664) #13	ENSBMUG00000002645 #14	HOXA5 (ENSBMUG00000002631) #15	HOXA6 (ENSBMUG00000002606) #16	HOXA7 (ENSBMUG00000002587) #17	HOXA9 (ENSBMUG00000002568) #18	ENSBMUG00000002543	ENSBMUG00000002522 #20	ENSBMUG00000002455	ENSBMUG00000002431 #21	EVX1 (ENSBMUG00000002374) #22	HIBADH (ENSBMUG00000002352) #25
Cetacea	ANCESTRAL SPECIES	13	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q.a #25	ENSGT01000000219565	ENSGT00950000183025.b.a.h #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Odontoceti	ANCESTRAL SPECIES	12	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q.a #25	ENSGT01000000219565	ENSGT00950000183025.b.a.h #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Odontoceti_a	ANCESTRAL SPECIES	13	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q.a #25	ENSGT01000000219565	ENSGT00950000183025.b.a.h #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Odontoceti_b	ANCESTRAL SPECIES	13	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q.a #25	ENSGT01000000219565	ENSGT00950000183025.b.a.h #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Monodontidae	ANCESTRAL SPECIES	12	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.q.a #25	ENSGT01000000219565	ENSGT00950000183025.b.a.h #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a
Narwhal	MODERN SPECIES	306	ENSMMNG00015006029	CBX3 (ENSMMNG00015006116)	SNX10 (ENSMMNG00015006146)	SKAP2 (ENSMMNG00015006170) #7	HOXA1 (ENSMMNG00015006195) #11	HOXA2 (ENSMMNG00015006212) #12	HOXA3 (ENSMMNG00015006227) #13	HOXA4 (ENSMMNG00015006236) #14	HOXA5 (ENSMMNG00015006249) #15	HOXA6 (ENSMMNG00015006261) #16	HOXA7 (ENSMMNG00015006271) #17	HOXA9 (ENSMMNG00015006287) #18	ENSMMNG00015006310	HOXA11 (ENSMMNG00015006318) #20	HOXA13 (ENSMMNG00015006328) #21	EVX1 (ENSMMNG00015006342) #22	ENSMMNG00015006356 #25	TAX1BP1 (ENSMMNG00015006389) #31	JAZF1 (ENSMMNG00015006424) #32	CREB5 (ENSMMNG00015006474) #34	TRIL (ENSMMNG00015006537) #36	CPVL (ENSMMNG00015006550) #37	CHN2 (ENSMMNG00015006621)	PRR15 (ENSMMNG00015006804)	WIPF3 (ENSMMNG00015006818)	SCRN1 (ENSMMNG00015006859)	FKBP14 (ENSMMNG00015006893)	PLEKHA8 (ENSMMNG00015006919)	MTURN (ENSMMNG00015006945)	ZNRF2 (ENSMMNG00015006956)	NOD1 (ENSMMNG00015006972)
Beluga whale	MODERN SPECIES	72	HNRNPA2B1 (ENSDLEG00000009544)	CBX3 (ENSDLEG00000009530)	SNX10 (ENSDLEG00000009511)	SKAP2 (ENSDLEG00000009464) #7	HOXA1 (ENSDLEG00000009441) #11	HOXA2 (ENSDLEG00000009422) #12	HOXA3 (ENSDLEG00000009412) #13	HOXA4 (ENSDLEG00000009384) #14	HOXA5 (ENSDLEG00000009373) #15	HOXA6 (ENSDLEG00000009363) #16	HOXA7 (ENSDLEG00000009351) #17	HOXA9 (ENSDLEG00000009337) #18	HOXA10 (ENSDLEG00000009312) #19	HOXA11 (ENSDLEG00000009292) #20	HOXA13 (ENSDLEG00000009264) #21	EVX1 (ENSDLEG00000009229) #22	HIBADH (ENSDLEG00000009200) #25	ENSDLEG00000009179	TAX1BP1 (ENSDLEG00000009131) #31	JAZF1 (ENSDLEG00000009079) #32	CREB5 (ENSDLEG00000009000) #34	TRIL (ENSDLEG00000008983) #36	CPVL (ENSDLEG00000008886) #37	CHN2 (ENSDLEG00000008545)	PRR15 (ENSDLEG00000008475)	WIPF3 (ENSDLEG00000008424)	SCRN1 (ENSDLEG00000008386)	FKBP14 (ENSDLEG00000008350)	PLEKHA8 (ENSDLEG00000008244)	MTURN (ENSDLEG00000008214)	ZNRF2 (ENSDLEG00000008178)
Vaquita	MODERN SPECIES	20	ENSPSNG00000015202	ENSPSNG00000015118	SNX10 (ENSPSNG00000014940)	SKAP2 (ENSPSNG00000014836) #7	HOXA1 (ENSPSNG00000014773) #11	HOXA2 (ENSPSNG00000014724) #12	HOXA3 (ENSPSNG00000014676) #13	HOXA4 (ENSPSNG00000014619) #14	HOXA5 (ENSPSNG00000014558) #15	HOXA6 (ENSPSNG00000014504) #16	HOXA7 (ENSPSNG00000014456) #17	HOXA9 (ENSPSNG00000014307) #18	HOXA10 (ENSPSNG00000014245) #19	HOXA11 (ENSPSNG00000014203) #20	HOXA13 (ENSPSNG00000014146) #21	EVX1 (ENSPSNG00000014065) #22	ENSPSNG00000014017 #25	ENSPSNG00000013961	TAX1BP1 (ENSPSNG00000013728) #31	JAZF1 (ENSPSNG00000013601) #32	CREB5 (ENSPSNG00000013240) #34	TRIL (ENSPSNG00000013162) #36	CPVL (ENSPSNG00000012990) #37	CHN2 (ENSPSNG00000012608)	PRR15 (ENSPSNG00000012523)	WIPF3 (ENSPSNG00000012347)	SCRN1 (ENSPSNG00000012165)	FKBP14 (ENSPSNG00000012087)	PLEKHA8 (ENSPSNG00000011889)	MTURN (ENSPSNG00000011778)	ZNRF2 (ENSPSNG00000011720)
Dolphin	MODERN SPECIES	3290																ENSTTRG00000005056 #22
Sperm whale	MODERN SPECIES	16	HNRNPA2B1 (ENSPCTG00005000537)	ENSPCTG00005000501	SNX10 (ENSPCTG00005000481)	SKAP2 (ENSPCTG00005000453) #7	HOXA1 (ENSPCTG00005000429) #11	HOXA2 (ENSPCTG00005000420) #12	HOXA4 (ENSPCTG00005000409) #14	HOXA5 (ENSPCTG00005000400) #15	HOXA6 (ENSPCTG00005000391) #16	HOXA7 (ENSPCTG00005000380) #17	HOXA9 (ENSPCTG00005000359) #18	ENSPCTG00005000324 #19	ENSPCTG00005000317	HOXA11 (ENSPCTG00005000283) #20	HOXA13 (ENSPCTG00005006985) #21	EVX1 (ENSPCTG00005006960) #22	HIBADH (ENSPCTG00005006944) #25	ENSPCTG00005006930	ENSPCTG00005006916	ENSPCTG00005006433 #31	JAZF1 (ENSPCTG00005006349) #32	CREB5 (ENSPCTG00005006108) #34	TRIL (ENSPCTG00005006053) #36	CPVL (ENSPCTG00005005992) #37	CHN2 (ENSPCTG00005005501)	PRR15 (ENSPCTG00005005430)	WIPF3 (ENSPCTG00005005378)	SCRN1 (ENSPCTG00005005255)	FKBP14 (ENSPCTG00005005226)	PLEKHA8 (ENSPCTG00005005155)	MTURN (ENSPCTG00005005111)
Blue whale	MODERN SPECIES	20	ENSBMSG00010013581	ENSBMSG00010013565	SNX10 (ENSBMSG00010013517)	SKAP2 (ENSBMSG00010013495) #7	ENSBMSG00010013476 #11	HOXA2 (ENSBMSG00010013466) #12	HOXA3 (ENSBMSG00010013449) #13	HOXA4 (ENSBMSG00010013444) #14	HOXA5 (ENSBMSG00010013430) #15	HOXA6 (ENSBMSG00010013414) #16	HOXA7 (ENSBMSG00010013396) #17	HOXA9 (ENSBMSG00010013373) #18	HOXA10 (ENSBMSG00010013344) #19	HOXA11 (ENSBMSG00010013325) #20	HOXA13 (ENSBMSG00010013314) #21	EVX1 (ENSBMSG00010013302) #22	ENSBMSG00010013284 #25	ENSBMSG00010013269	ENSBMSG00010013194 #31	JAZF1 (ENSBMSG00010013161) #32	CREB5 (ENSBMSG00010013101) #34	TRIL (ENSBMSG00010013079) #36	CPVL (ENSBMSG00010013056) #37	CHN2 (ENSBMSG00010012867)	PRR15 (ENSBMSG00010012818)	WIPF3 (ENSBMSG00010012793)	SCRN1 (ENSBMSG00010012766)	FKBP14 (ENSBMSG00010012757)	ENSBMSG00010012747	PLEKHA8 (ENSBMSG00010012573)	MTURN (ENSBMSG00010012531)
Camelidae	ANCESTRAL SPECIES	2	ENSGT00940000154431.f.c.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000155029.c.a	ENSGT00940000159522 #13	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00930000152153	ENSGT00940000159854 #22	ENSGT00940000155255.q #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Arabian camel	MODERN SPECIES	33	HNRNPA2B1 (ENSCDRG00005000755)	CBX3 (ENSCDRG00005000839)	SNX10 (ENSCDRG00005000870)	SKAP2 (ENSCDRG00005000915) #7	HOXA1 (ENSCDRG00005000950) #11	ENSCDRG00005000963	HOXA3 (ENSCDRG00005000976) #13	HOXA5 (ENSCDRG00005001022) #15	HOXA6 (ENSCDRG00005001033) #16	HOXA7 (ENSCDRG00005001043) #17	HOXA9 (ENSCDRG00005001067) #18	HOXA10 (ENSCDRG00005001092) #19	HOXA11 (ENSCDRG00005001112) #20	HOXA13 (ENSCDRG00005001129) #21	ENSCDRG00005001165	ENSCDRG00005001177 #22	HIBADH (ENSCDRG00005001193) #25	TAX1BP1 (ENSCDRG00005001239) #31	JAZF1 (ENSCDRG00005001369) #32	CREB5 (ENSCDRG00005001440) #34	TRIL (ENSCDRG00005001580) #36	CPVL (ENSCDRG00005001591) #37	CHN2 (ENSCDRG00005001695)	PRR15 (ENSCDRG00005002120)	SCRN1 (ENSCDRG00005002180)	FKBP14 (ENSCDRG00005002197)	PLEKHA8 (ENSCDRG00005002216)	MTURN (ENSCDRG00005002260)	ZNRF2 (ENSCDRG00005002276)	NOD1 (ENSCDRG00005002317)	GGCT (ENSCDRG00005002345)
Atlantogenata	ANCESTRAL SPECIES	7	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Afrotheria	ANCESTRAL SPECIES	5	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00940000159017.a.a	ENSGT00940000157845	ENSGT00500000044921.b
Afrotheria_a	ANCESTRAL SPECIES	5	ENSGT00940000154431.f	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00940000159017.a.a	ENSGT00940000157845	ENSGT00500000044921.b
Elephant	MODERN SPECIES	428	HNRNPA2B1 (ENSLAFG00000006902)	ENSLAFG00000006907	SNX10 (ENSLAFG00000008687)	SKAP2 (ENSLAFG00000021410) #7	HOXA1 (ENSLAFG00000001615) #11	HOXA2 (ENSLAFG00000001565) #12	HOXA3 (ENSLAFG00000023253) #13	HOXA4 (ENSLAFG00000008965) #14	HOXA5 (ENSLAFG00000026981) #15	HOXA6 (ENSLAFG00000006281) #16	HOXA7 (ENSLAFG00000002101) #17	HOXA9 (ENSLAFG00000008970) #18	HOXA10 (ENSLAFG00000030920) #19	HOXA11 (ENSLAFG00000005482) #20	HOXA13 (ENSLAFG00000000738) #21	EVX1 (ENSLAFG00000001942) #22	HIBADH (ENSLAFG00000013650) #25	TAX1BP1 (ENSLAFG00000006940) #31	JAZF1 (ENSLAFG00000006942) #32	ENSLAFG00000027732	CREB5 (ENSLAFG00000029453) #34	TRIL (ENSLAFG00000029935) #36	CPVL (ENSLAFG00000002811) #37	CHN2 (ENSLAFG00000002595)	PRR15 (ENSLAFG00000002598)	ENSLAFG00000030264	SCRN1 (ENSLAFG00000017504)	FKBP14 (ENSLAFG00000007038)	PLEKHA8 (ENSLAFG00000007041)	ZNRF2 (ENSLAFG00000023370)	NOD1 (ENSLAFG00000011290)
Hyrax	MODERN SPECIES	11059																EVX1 (ENSPCAG00000006622) #22
Tenrec	MODERN SPECIES	16349																EVX1 (ENSETEG00000003906) #22
Xenarthra	ANCESTRAL SPECIES	1052												ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22
Sloth	MODERN SPECIES	9255																ENSCHOG00000011497 #22
Armadillo	MODERN SPECIES	434												HOXA9 (ENSDNOG00000043901) #18	ENSDNOG00000039533	HOXA11 (ENSDNOG00000044503) #20	HOXA13 (ENSDNOG00000047528) #21	EVX1 (ENSDNOG00000005246) #22
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00940000153305.c	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000155029.c.a	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Opossum	MODERN SPECIES	7	HNRNPA2B1 (ENSMODG00000000603)	ENSMODG00000000572	SNX10 (ENSMODG00000040432)	SKAP2 (ENSMODG00000000521) #7	HOXA1 (ENSMODG00000000507) #11	HOXA2 (ENSMODG00000000502) #12	HOXA3 (ENSMODG00000000494) #13	ENSMODG00000049221 #14	HOXA5 (ENSMODG00000000483) #15	HOXA6 (ENSMODG00000000472) #16	HOXA7 (ENSMODG00000038697) #17	ENSMODG00000051224	HOXA10 (ENSMODG00000000463) #19	HOXA11 (ENSMODG00000000453) #20	HOXA13 (ENSMODG00000000449) #21	EVX1 (ENSMODG00000000447) #22	HIBADH (ENSMODG00000000340) #25	ENSMODG00000000315 #31	JAZF1 (ENSMODG00000000289) #32	ENSMODG00000047548	CREB5 (ENSMODG00000015335) #34	TRIL (ENSMODG00000023951) #36	CPVL (ENSMODG00000015330) #37	CHN2 (ENSMODG00000015321)	ENSMODG00000039368	ENSMODG00000037541	SCRN1 (ENSMODG00000015310)	FKBP14 (ENSMODG00000015306)	PLEKHA8 (ENSMODG00000015303)	MTURN (ENSMODG00000015290)	ZNRF2 (ENSMODG00000015284)
Marsupialia_b	ANCESTRAL SPECIES	10	ENSGT00940000154431.f	ENSGT00940000153305.c	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000155029.c.a	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Diprotodontia	ANCESTRAL SPECIES	18	ENSGT00940000154431.f	ENSGT00940000153305.c	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000155029.c.a	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Diprotodontia_a	ANCESTRAL SPECIES	20	ENSGT00940000154431.f	ENSGT00940000153305.c	ENSGT00940000156007	ENSGT00390000017856.a #7	ENSGT00940000157315 #11	ENSGT00940000155029.c.a	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585.a #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #25	ENSGT00950000183025.b.a #31	ENSGT00390000003635 #32	ENSGT00940000156420 #34	ENSGT00940000161975 #36	ENSGT00940000159498 #37	ENSGT01030000234635.a.b.a.a	ENSGT00940000154534.b.b	ENSGT00940000160267	ENSGT00390000013474.b.b	ENSGT00940000157858	ENSGT00940000157288	ENSGT00500000045044	ENSGT00940000159017.a.a	ENSGT00940000157845
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1036	ENSVURG00010019785	ENSVURG00010019765	ENSVURG00010019757	ENSVURG00010019737 #7	ENSVURG00010019727 #11	ENSVURG00010019721	ENSVURG00010019713 #13	ENSVURG00010019706 #14	ENSVURG00010019698 #15	ENSVURG00010019692 #16	ENSVURG00010019687 #17	ENSVURG00010019686 #18	HOXA10 (ENSVURG00010019671) #19	ENSVURG00010019662 #20	ENSVURG00010019656 #21	ENSVURG00010019653 #22	ENSVURG00010019606 #25	ENSVURG00010019563 #31	ENSVURG00010019555 #32	ENSVURG00010019547 #34	ENSVURG00010019537 #36	ENSVURG00010019508 #37	ENSVURG00010018812	ENSVURG00010018779	ENSVURG00010018768	ENSVURG00010018761	ENSVURG00010018752	ENSVURG00010018740	ENSVURG00010018732	ENSVURG00010018714	ENSVURG00010018701
Common wonbat	MODERN SPECIES	1036	ENSVURG00010000471	ENSVURG00010000437	ENSVURG00010000381	ENSVURG00010000328 #7	ENSVURG00010000303 #11	ENSVURG00010000296	ENSVURG00010000285 #13	ENSVURG00010000272 #14	ENSVURG00010000263 #15	ENSVURG00010000256 #16	ENSVURG00010000250 #17	ENSVURG00010000241 #18	ENSVURG00010000225	ENSVURG00010000215 #20	ENSVURG00010000199 #21	ENSVURG00010000187 #22	ENSVURG00010000176 #25	ENSVURG00010000109 #31	ENSVURG00010000094 #32	ENSVURG00010023109 #34	ENSVURG00010023105 #36	ENSVURG00010023103 #37	ENSVURG00010023062	ENSVURG00010023054	ENSVURG00010023046	ENSVURG00010023039	ENSVURG00010023036	ENSVURG00010023031	ENSVURG00010023026	ENSVURG00010023021	ENSVURG00010023007
koala	MODERN SPECIES	50	ENSPCIG00000013724	SNX10 (ENSPCIG00000013721)	SKAP2 (ENSPCIG00000013715) #7	ENSPCIG00000032652	HOXA1 (ENSPCIG00000013712) #11	ENSPCIG00000013706	HOXA3 (ENSPCIG00000013705) #13	ENSPCIG00000013701 #14	HOXA5 (ENSPCIG00000013698) #15	HOXA6 (ENSPCIG00000037246) #16	HOXA7 (ENSPCIG00000013692) #17	HOXA9 (ENSPCIG00000013689) #18	ENSPCIG00000033721	HOXA11 (ENSPCIG00000013678) #20	HOXA13 (ENSPCIG00000013657) #21	EVX1 (ENSPCIG00000013640) #22	HIBADH (ENSPCIG00000002993) #25	TAX1BP1 (ENSPCIG00000002923) #31	JAZF1 (ENSPCIG00000002897) #32	CREB5 (ENSPCIG00000005994) #34	CPVL (ENSPCIG00000008535) #37	CHN2 (ENSPCIG00000032230)	WIPF3 (ENSPCIG00000034566)	SCRN1 (ENSPCIG00000019775)	FKBP14 (ENSPCIG00000006908)	PLEKHA8 (ENSPCIG00000022307)	MTURN (ENSPCIG00000022309)	ZNRF2 (ENSPCIG00000022316)	NOD1 (ENSPCIG00000006834)	GGCT (ENSPCIG00000037416)	ENSPCIG00000032473
Wallaby	MODERN SPECIES	1545																EVX1 (ENSMEUG00000005949) #22
Tasmanian devil	MODERN SPECIES	4	ENSSHAG00000018628	ENSSHAG00000024177	ENSSHAG00000017945	HNRNPA2B1 (ENSSHAG00000028707)	CBX3 (ENSSHAG00000017913)	SNX10 (ENSSHAG00000028084)	SKAP2 (ENSSHAG00000022128) #7	HOXA1 (ENSSHAG00000016818) #11	HOXA2 (ENSSHAG00000016805) #12	HOXA4 (ENSSHAG00000029999) #14	HOXA3 (ENSSHAG00000016786) #13	ENSSHAG00000026258	HOXA10 (ENSSHAG00000021817) #19	HOXA11 (ENSSHAG00000016623) #20	HOXA13 (ENSSHAG00000016581) #21	EVX1 (ENSSHAG00000016439) #22	HIBADH (ENSSHAG00000015501) #25	TAX1BP1 (ENSSHAG00000015121) #31	JAZF1 (ENSSHAG00000025117) #32	CREB5 (ENSSHAG00000012285) #34	TRIL (ENSSHAG00000021390) #36	CPVL (ENSSHAG00000010026) #37	CHN2 (ENSSHAG00000022580)	PRR15 (ENSSHAG00000024266)	ENSSHAG00000005324	SCRN1 (ENSSHAG00000004467)	FKBP14 (ENSSHAG00000029085)	PLEKHA8 (ENSSHAG00000002747)	MTURN (ENSSHAG00000023838)	ZNRF2 (ENSSHAG00000022515)	ENSSHAG00000028562