Euarchontoglires_A	ANCESTRAL SPECIES	23	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00390000016010	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440	ENSGT00940000163268 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Glires	ANCESTRAL SPECIES	24	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440	ENSGT00940000163268 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Rodentia	ANCESTRAL SPECIES	12	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440	ENSGT00940000163268 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268 #19	ENSGT00940000162440	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000153305.c.e.b #7	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Marmotini	ANCESTRAL SPECIES	37	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b #7	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.m #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000165512
Alpin marmot	MODERN SPECIES	26	ENSMMMG00000006360 #7	SNX10 (ENSMMMG00000006398) #8	ENSMMMG00000006429 #9	ENSMMMG00000006435 #10	HOXA1 (ENSMMMG00000006456) #11	HOXA2 (ENSMMMG00000006490) #12	HOXA3 (ENSMMMG00000006503) #13	ENSMMMG00000006511 #14	HOXA5 (ENSMMMG00000006523) #15	HOXA6 (ENSMMMG00000006535) #16	HOXA7 (ENSMMMG00000006545) #17	HOXA9 (ENSMMMG00000006550) #18	ENSMMMG00000006561 #19	HOXA11 (ENSMMMG00000006566) #20	HOXA13 (ENSMMMG00000006593) #21	EVX1 (ENSMMMG00000006623) #22	HIBADH (ENSMMMG00000006642) #23	TAX1BP1 (ENSMMMG00000006653) #24	JAZF1 (ENSMMMG00000006695) #25	CREB5 (ENSMMMG00000006736) #26	TRIL (ENSMMMG00000006835) #27	CPVL (ENSMMMG00000006841) #28	CHN2 (ENSMMMG00000006900) #29	PRR15 (ENSMMMG00000007372) #30	WIPF3 (ENSMMMG00000007380) #31	SCRN1 (ENSMMMG00000007428) #32	FKBP14 (ENSMMMG00000007497) #33	ENSMMMG00000007508 #34	PLEKHA8 (ENSMMMG00000007517) #35	MTURN (ENSMMMG00000007542) #36	ENSMMMG00000007598 #37
Marmotini_b	ANCESTRAL SPECIES	26	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b #7	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.n ##23	ENSGT00940000155255.m #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37
Arctic ground squirrel	MODERN SPECIES	223	ENSUPAG00010017471	ENSUPAG00010017469 ##7	SNX10 (ENSUPAG00010017455) #8	SKAP2 (ENSUPAG00010017432) #9	HOXA1 (ENSUPAG00010017428) #11	HOXA2 (ENSUPAG00010017405) #12	HOXA3 (ENSUPAG00010017403) #13	HOXA4 (ENSUPAG00010017400) #14	HOXA5 (ENSUPAG00010017397) #15	HOXA6 (ENSUPAG00010017390) #16	HOXA7 (ENSUPAG00010017387) #17	HOXA9 (ENSUPAG00010017383) #18	ENSUPAG00010017375 #19	HOXA11 (ENSUPAG00010017374) #20	HOXA13 (ENSUPAG00010017357) #21	EVX1 (ENSUPAG00010017335) #22
Squirrel	MODERN SPECIES	78	ENSSTOG00000006202	CBX3 (ENSSTOG00000006223) #7	SNX10 (ENSSTOG00000024131) #8	SKAP2 (ENSSTOG00000021247) #9	HOXA1 (ENSSTOG00000024209) #11	HOXA2 (ENSSTOG00000016362) #12	HOXA3 (ENSSTOG00000021230) #13	ENSSTOG00000024606 #14	HOXA5 (ENSSTOG00000011206) #15	HOXA6 (ENSSTOG00000022675) #16	HOXA7 (ENSSTOG00000011208) #17	HOXA9 (ENSSTOG00000028613) #18	ENSSTOG00000021212 #19	HOXA11 (ENSSTOG00000022674) #20	HOXA13 (ENSSTOG00000029157) #21	EVX1 (ENSSTOG00000025642) #22	ENSSTOG00000004108 ##23	TAX1BP1 (ENSSTOG00000003056) #24	JAZF1 (ENSSTOG00000005946) #25	CREB5 (ENSSTOG00000013279) #26	CPVL (ENSSTOG00000010505) #28	CHN2 (ENSSTOG00000002346) #29	PRR15 (ENSSTOG00000020339) #30	WIPF3 (ENSSTOG00000009012) #31	SCRN1 (ENSSTOG00000009029) #32	FKBP14 (ENSSTOG00000005235) #33	PLEKHA8 (ENSSTOG00000009052) #35	MTURN (ENSSTOG00000021099) #36	ENSSTOG00000034241	ENSSTOG00000033923 #37	NOD1 (ENSSTOG00000022644)
Eurasian red squirrel	MODERN SPECIES	17	CBX3 (ENSSVLG00005011150) #7	ENSSVLG00005011185	SNX10 (ENSSVLG00005011242) #8	ENSSVLG00005011503 #9	HOXA1 (ENSSVLG00005011664) #11	HOXA3 (ENSSVLG00005011881) #13	HOXA4 (ENSSVLG00005011927) #14	HOXA5 (ENSSVLG00005011967) #15	HOXA6 (ENSSVLG00005012001) #16	HOXA7 (ENSSVLG00005012041) #17	HOXA9 (ENSSVLG00005012091) #18	HOXA10 (ENSSVLG00005012252)	HOXA11 (ENSSVLG00005012306) #20	ENSSVLG00005012350	HOXA13 (ENSSVLG00005012374) #21	EVX1 (ENSSVLG00005012472) #22	HIBADH (ENSSVLG00005012541) #23	TAX1BP1 (ENSSVLG00005012659) #24	JAZF1 (ENSSVLG00005012816) #25	ENSSVLG00005012873	ENSSVLG00005012905	ENSSVLG00005012960	CREB5 (ENSSVLG00005013014) #26	TRIL (ENSSVLG00005013079) #27	CPVL (ENSSVLG00005013200) #28	CHN2 (ENSSVLG00005013621) #29	PRR15 (ENSSVLG00005013762) #30	WIPF3 (ENSSVLG00005013843) #31	SCRN1 (ENSSVLG00005013986) #32	FKBP14 (ENSSVLG00005014087) #33	PLEKHA8 (ENSSVLG00005014153) #35
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00940000153305.c.e.b #7	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268 #19	ENSGT00940000162440	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00460000041667	ENSGT00940000159017.a.a #37
Naked mole-rat female	MODERN SPECIES	5	ENSHGLG00000014772 #7	ENSHGLG00000050650 #8	SKAP2 (ENSHGLG00000042970) #9	ENSHGLG00000045030	ENSHGLG00000036434	HOXA1 (ENSHGLG00000018117) #11	HOXA2 (ENSHGLG00000017804) #12	HOXA3 (ENSHGLG00000046038) #13	HOXA4 (ENSHGLG00000048807) #14	HOXA5 (ENSHGLG00000016863) #15	ENSHGLG00000043027 #17	HOXA9 (ENSHGLG00000045326) #18	HOXA10 (ENSHGLG00000050027)	HOXA11 (ENSHGLG00000009266) #20	HOXA13 (ENSHGLG00000039960) #21	EVX1 (ENSHGLG00000005868) #22	HIBADH (ENSHGLG00000005354) #23	ENSHGLG00000047390	ENSHGLG00000016256 #24	JAZF1 (ENSHGLG00000049016) #25	ENSHGLG00000016063	CREB5 (ENSHGLG00000018417) #26	TRIL (ENSHGLG00000037451) #27	CPVL (ENSHGLG00000016195) #28	CHN2 (ENSHGLG00000033880) #29	ENSHGLG00000017765	PRR15 (ENSHGLG00000047965) #30	SCRN1 (ENSHGLG00000008257) #32	FKBP14 (ENSHGLG00000006567) #33	ENSHGLG00000007305	PLEKHA8 (ENSHGLG00000005404) #35
Hystricomorpha_a	ANCESTRAL SPECIES	41	ENSGT00940000153305.c.e.b #7	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268 #19	ENSGT00940000162440	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00460000041667	ENSGT00940000159017.a.a #37
Hystricomorpha_b	ANCESTRAL SPECIES	39	ENSGT00940000153305.c.e.b #7	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268 #19	ENSGT00940000162440	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00460000041667	ENSGT00940000159017.a.a #37
Long-tailed chinchilla	MODERN SPECIES	117	ENSCLAG00000014058	ENSCLAG00000012267 #7	ENSCLAG00000005337 #8	SKAP2 (ENSCLAG00000006785) #9	HOXA1 (ENSCLAG00000014364) #11	HOXA2 (ENSCLAG00000016180) #12	HOXA3 (ENSCLAG00000006878) #13	ENSCLAG00000008251 #14	HOXA5 (ENSCLAG00000004908) #15	HOXA6 (ENSCLAG00000006012) #16	HOXA7 (ENSCLAG00000008671) #17	HOXA9 (ENSCLAG00000010294) #18	HOXA10 (ENSCLAG00000015066)	HOXA11 (ENSCLAG00000009905) #20	HOXA13 (ENSCLAG00000010361) #21	EVX1 (ENSCLAG00000010646) #22	HIBADH (ENSCLAG00000010236) #23	TAX1BP1 (ENSCLAG00000013263) #24	JAZF1 (ENSCLAG00000009988) #25	CREB5 (ENSCLAG00000011091) #26	TRIL (ENSCLAG00000018111) #27	CPVL (ENSCLAG00000009635) #28	CHN2 (ENSCLAG00000014307) #29	PRR15 (ENSCLAG00000010326) #30	WIPF3 (ENSCLAG00000011493) #31	SCRN1 (ENSCLAG00000010543) #32	FKBP14 (ENSCLAG00000010774) #33	PLEKHA8 (ENSCLAG00000011413) #35	MTURN (ENSCLAG00000011854) #36	ENSCLAG00000016063	ENSCLAG00000010973 #37
Degu	MODERN SPECIES	56	ENSODEG00000019395	SKAP2 (ENSODEG00000008150) #9	ENSODEG00000009507	HOXA1 (ENSODEG00000008589) #11	HOXA2 (ENSODEG00000009002) #12	HOXA3 (ENSODEG00000009161) #13	ENSODEG00000007568	HOXA5 (ENSODEG00000007850) #15	HOXA6 (ENSODEG00000007928) #16	HOXA7 (ENSODEG00000008762) #17	HOXA9 (ENSODEG00000009347) #18	ENSODEG00000009545 #19	ENSODEG00000009794	HOXA11 (ENSODEG00000010282) #20	HOXA13 (ENSODEG00000007693) #21	EVX1 (ENSODEG00000007853) #22	HIBADH (ENSODEG00000010442) #23	ENSODEG00000007935	ENSODEG00000019519	ENSODEG00000011639	ENSODEG00000011321 #24	JAZF1 (ENSODEG00000009398) #25	CREB5 (ENSODEG00000008640) #26	TRIL (ENSODEG00000019862) #27	ENSODEG00000009470 #28	ENSODEG00000008241	CHN2 (ENSODEG00000008637) #29	PRR15 (ENSODEG00000019540) #30	ENSODEG00000019511	WIPF3 (ENSODEG00000007842) #31	SCRN1 (ENSODEG00000008733) #32
Guinea pig	MODERN SPECIES	44	HNRNPA2B1 (ENSCPOG00000036630)	CBX3 (ENSCPOG00000015168) #7	SNX10 (ENSCPOG00000006831) #8	ENSCPOG00000037875	SKAP2 (ENSCPOG00000000258) #9	HOXA1 (ENSCPOG00000037658) #11	HOXA2 (ENSCPOG00000034959) #12	HOXA3 (ENSCPOG00000030159) #13	ENSCPOG00000032985 #14	HOXA5 (ENSCPOG00000035800) #15	HOXA6 (ENSCPOG00000032757) #16	HOXA9 (ENSCPOG00000011365) #18	ENSCPOG00000031122 #19	HOXA11 (ENSCPOG00000039723) #20	HOXA13 (ENSCPOG00000033640) #21	EVX1 (ENSCPOG00000011370) #22	HIBADH (ENSCPOG00000020159) #23	TAX1BP1 (ENSCPOG00000000826) #24	JAZF1 (ENSCPOG00000034687) #25	CREB5 (ENSCPOG00000013545) #26	TRIL (ENSCPOG00000024604) #27	CPVL (ENSCPOG00000013406) #28	CHN2 (ENSCPOG00000013533) #29	WIPF3 (ENSCPOG00000006935) #31	SCRN1 (ENSCPOG00000006943) #32	FKBP14 (ENSCPOG00000040393) #33	PLEKHA8 (ENSCPOG00000005025) #35	MTURN (ENSCPOG00000031591) #36	ENSCPOG00000027612 #37	NOD1 (ENSCPOG00000014360)	GGCT (ENSCPOG00000024870)
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440	ENSGT00940000163268 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268 #19	ENSGT00940000162440	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Muroidea	ANCESTRAL SPECIES	8	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268 #19	ENSGT00940000162440	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000153305.c.e.b #7	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b #7	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b #7	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255.o #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Chinese hamster chok1gshd	MODERN SPECIES	212	Cbx3 (ENSCGRG00001024311) #7	Snx10 (ENSCGRG00001006115) #8	Skap2 (ENSCGRG00001015578) #9	ENSCGRG00001016005	Hoxa1 (ENSCGRG00001018306) #11	Hoxa2 (ENSCGRG00001019226) #12	Hoxa3 (ENSCGRG00001023867) #13	Hoxa4 (ENSCGRG00001000481) #14	Hoxa5 (ENSCGRG00001001687) #15	Hoxa6 (ENSCGRG00001003922) #16	Hoxa7 (ENSCGRG00001019884) #17	Hoxa9 (ENSCGRG00001007287) #18	Hoxa10 (ENSCGRG00001012738)	Hoxa11 (ENSCGRG00001014980) #20	Hoxa13 (ENSCGRG00001017295) #21	Evx1 (ENSCGRG00001000887) #22	ENSCGRG00001006507 #23	Tax1bp1 (ENSCGRG00001012350) #24	Jazf1 (ENSCGRG00001016388) #25	ENSCGRG00001012730	Creb5 (ENSCGRG00001018702) #26	Tril (ENSCGRG00001006970) #27	Cpvl (ENSCGRG00001012752) #28	Chn2 (ENSCGRG00001019164) #29	Prr15 (ENSCGRG00001001455) #30	Wipf3 (ENSCGRG00001013250) #31	Scrn1 (ENSCGRG00001001373) #32	Fkbp14 (ENSCGRG00001009179) #33	Plekha8 (ENSCGRG00001012359) #35	Mturn (ENSCGRG00001020710) #36	Znrf2 (ENSCGRG00001004725) #37
Golden Hamster	MODERN SPECIES	822	4921507P07Rik (ENSMAUG00000007334)	Npvf (ENSMAUG00000006780)	ENSMAUG00000004168	Hnrnpa2b1 (ENSMAUG00000005706)	ENSMAUG00000004290 ##7	Snx10 (ENSMAUG00000003697) #8	ENSMAUG00000002622 #9	Hoxa5 (ENSMAUG00000002058) #15	Hoxa6 (ENSMAUG00000001166) #16	Hoxa3 (ENSMAUG00000001129) #13	Hoxa7 (ENSMAUG00000001017) #17	Hoxa9 (ENSMAUG00000000669) #18	Hoxa10 (ENSMAUG00000001122)	Hoxa11 (ENSMAUG00000001056) #20	Hoxa13 (ENSMAUG00000001019) #21	Evx1 (ENSMAUG00000000608) #22	ENSMAUG00000000446 #23	ENSMAUG00000000426 #24
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00940000153305.c.e.b #7	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440	ENSGT00940000163268 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Northern American deer mouse	MODERN SPECIES	16	Cbx3 (ENSPEMG00000020155) #7	Snx10 (ENSPEMG00000005121) #8	Skap2 (ENSPEMG00000019639) #9	ENSPEMG00000027861	Hoxa1 (ENSPEMG00000020130) #11	Hoxa2 (ENSPEMG00000019520) #12	Hoxa3 (ENSPEMG00000028539) #13	ENSPEMG00000019740 #14	Hoxa5 (ENSPEMG00000029029) #15	Hoxa6 (ENSPEMG00000030268) #16	ENSPEMG00000025086	ENSPEMG00000020209 #18	ENSPEMG00000025887 #19	Hoxa11 (ENSPEMG00000019890) #20	Hoxa13 (ENSPEMG00000024341) #21	Evx1 (ENSPEMG00000000503) #22	Hibadh (ENSPEMG00000004771) #23	Tax1bp1 (ENSPEMG00000030323) #24	Jazf1 (ENSPEMG00000013422) #25	Creb5 (ENSPEMG00000008456) #26	Tril (ENSPEMG00000014631) #27	Cpvl (ENSPEMG00000018828) #28	Chn2 (ENSPEMG00000021269) #29	Prr15 (ENSPEMG00000022428) #30	Wipf3 (ENSPEMG00000024262) #31	Scrn1 (ENSPEMG00000029796) #32	Fkbp14 (ENSPEMG00000024960) #33	Plekha8 (ENSPEMG00000010696) #35	Mturn (ENSPEMG00000030724) #36	ENSPEMG00000019334 #37	Nod1 (ENSPEMG00000019408)
Prairie vole	MODERN SPECIES	94	Cbx3 (ENSMOCG00000008087) ##7	Snx10 (ENSMOCG00000016046) #8	Skap2 (ENSMOCG00000017060) #9	Hoxa1 (ENSMOCG00000005031) #11	Hoxa2 (ENSMOCG00000019225) #12	ENSMOCG00000016584	Hoxa4 (ENSMOCG00000011933) #14	Hoxa5 (ENSMOCG00000012515) #15	Hoxa6 (ENSMOCG00000010245) #16	Hoxa3 (ENSMOCG00000004227) #13	Hoxa7 (ENSMOCG00000001247) #17	Hoxa9 (ENSMOCG00000017667) #18	Hoxa10 (ENSMOCG00000011516)	Hoxa11 (ENSMOCG00000004073) #20	Hoxa13 (ENSMOCG00000000460) #21	Evx1 (ENSMOCG00000001101) #22	Htr1a (ENSMOCG00000003283)	Rnf180 (ENSMOCG00000005501)	Rgs7bp (ENSMOCG00000008886)	ENSMOCG00000000487	Shisal2b (ENSMOCG00000017631)	Srek1ip1 (ENSMOCG00000018975)	Cwc27 (ENSMOCG00000001833)	Adamts6 (ENSMOCG00000013917)	Cenpk (ENSMOCG00000019943)	Ppwd1 (ENSMOCG00000000551)	Trim23 (ENSMOCG00000018771)	Trappc13 (ENSMOCG00000016517)	Sgtb (ENSMOCG00000019258)	Nln (ENSMOCG00000002226)	Erbin (ENSMOCG00000000147)
Murinae	ANCESTRAL SPECIES	4	ENSGT00940000153305.c.e.a ##7	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Mus	ANCESTRAL SPECIES	20	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000168920	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000168920	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Mus_B	ANCESTRAL SPECIES	20	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000168920	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440	ENSGT00940000163268 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
Mus_C	ANCESTRAL SPECIES	19	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000168920	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440	ENSGT00940000163268 #19	ENSGT00940000158311 #20	ENSGT00700000106050	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00500000045044 #36	ENSGT00940000159017.a.a #37	ENSGT00940000157845
spretus	MODERN SPECIES	15	MGP_SPRETEiJ_G0029380 ##7	Snx10 (MGP_SPRETEiJ_G0029381) #8	Skap2 (MGP_SPRETEiJ_G0029382) #9	Hoxa1 (MGP_SPRETEiJ_G0029383) #11	Hoxa2 (MGP_SPRETEiJ_G0029384) #12	MGP_SPRETEiJ_G0029385	Hoxa3 (MGP_SPRETEiJ_G0029386) #13	Hoxa4 (MGP_SPRETEiJ_G0029387) #14	Hoxa5 (MGP_SPRETEiJ_G0029388) #15	Hoxa6 (MGP_SPRETEiJ_G0029389) #16	Hoxa7 (MGP_SPRETEiJ_G0029390) #17	Hoxa9 (MGP_SPRETEiJ_G0029391) #18	Hoxa10 (MGP_SPRETEiJ_G0029392)	Hoxa11 (MGP_SPRETEiJ_G0029393) #20	MGP_SPRETEiJ_G0029394 #21	Evx1 (MGP_SPRETEiJ_G0029395) #22	Hibadh (MGP_SPRETEiJ_G0029396) #23	Tax1bp1 (MGP_SPRETEiJ_G0029397) #24	Jazf1 (MGP_SPRETEiJ_G0029398) #25	Creb5 (MGP_SPRETEiJ_G0029399) #26	Tril (MGP_SPRETEiJ_G0029400) #27	Cpvl (MGP_SPRETEiJ_G0029401) #28	Chn2 (MGP_SPRETEiJ_G0029402) #29	Prr15 (MGP_SPRETEiJ_G0029403) #30	MGP_SPRETEiJ_G0029404 #31	Scrn1 (MGP_SPRETEiJ_G0029405) #32	Plekha8 (MGP_SPRETEiJ_G0029407) #35	Mturn (MGP_SPRETEiJ_G0029408) #36	Znrf2 (MGP_SPRETEiJ_G0029409) #37	Nod1 (MGP_SPRETEiJ_G0029410)	Ggct (MGP_SPRETEiJ_G0029411)
Steppe mouse	MODERN SPECIES	3410	Skap2 (ENSMSIG00000009994) #9	Hoxa1 (ENSMSIG00000009971) #11	Hoxa2 (ENSMSIG00000009914) #12	ENSMSIG00000009910	ENSMSIG00000009893	Hoxa3 (ENSMSIG00000009863) #13	Hoxa4 (ENSMSIG00000009874) #14	ENSMSIG00000009856 #15	Hoxa6 (ENSMSIG00000009850) #16	Hoxa7 (ENSMSIG00000009836) #17	Hoxa9 (ENSMSIG00000009832) #18	ENSMSIG00000009817 #19	Hoxa11 (ENSMSIG00000009809) #20	ENSMSIG00000009764	ENSMSIG00000009733 #21	Evx1 (ENSMSIG00000009707) #22	ENSMSIG00000009698	Hibadh (ENSMSIG00000009672) #23	Tax1bp1 (ENSMSIG00000009618) #24	Jazf1 (ENSMSIG00000009609) #25	ENSMSIG00000009588 #26
Mouse	MODERN SPECIES	15	Hnrnpa2b1 (ENSMUSG00000004980)	Cbx3 (ENSMUSG00000029836) #7	Snx10 (ENSMUSG00000038301) #8	Skap2 (ENSMUSG00000059182) #9	Hoxa1 (ENSMUSG00000029844) #11	Hoxa2 (ENSMUSG00000014704) #12	Hoxa3 (ENSMUSG00000079560) #13	Hoxa4 (ENSMUSG00000000942) #14	Hoxa5 (ENSMUSG00000038253) #15	Hoxa6 (ENSMUSG00000043219) #16	Hoxa7 (ENSMUSG00000038236) #17	Hoxa9 (ENSMUSG00000038227) #18	Hoxa10 (ENSMUSG00000000938)	Hoxa11 (ENSMUSG00000038210) #20	Hoxa13 (ENSMUSG00000038203) #21	Evx1 (ENSMUSG00000005503) #22	Hibadh (ENSMUSG00000029776) #23	Tax1bp1 (ENSMUSG00000004535) #24	Jazf1 (ENSMUSG00000063568) #25	Creb5 (ENSMUSG00000053007) #26	Tril (ENSMUSG00000043496) #27	Cpvl (ENSMUSG00000052955) #28	Chn2 (ENSMUSG00000004633) #29	Prr15 (ENSMUSG00000045725) #30	Wipf3 (ENSMUSG00000086040) #31	Scrn1 (ENSMUSG00000019124) #32	Fkbp14 (ENSMUSG00000038074) #33	Plekha8 (ENSMUSG00000005225) #35	Mturn (ENSMUSG00000038065) #36	Znrf2 (ENSMUSG00000058446) #37	Nod1 (ENSMUSG00000038058)
Ryukyu mouse	MODERN SPECIES	15	MGP_CAROLIEiJ_G0028378 ##7	MGP_CAROLIEiJ_G0028379 #8	Skap2 (MGP_CAROLIEiJ_G0028380) #9	Hoxa1 (MGP_CAROLIEiJ_G0028381) #11	Hoxa2 (MGP_CAROLIEiJ_G0028382) #12	MGP_CAROLIEiJ_G0028383	Hoxa3 (MGP_CAROLIEiJ_G0028384) #13	MGP_CAROLIEiJ_G0028385	Hoxa4 (MGP_CAROLIEiJ_G0028386) #14	Hoxa5 (MGP_CAROLIEiJ_G0028387) #15	Hoxa7 (MGP_CAROLIEiJ_G0028388) #17	Hoxa9 (MGP_CAROLIEiJ_G0028389) #18	Hoxa10 (MGP_CAROLIEiJ_G0028390)	Hoxa11 (MGP_CAROLIEiJ_G0028391) #20	Hoxa13 (MGP_CAROLIEiJ_G0028392) #21	Evx1 (MGP_CAROLIEiJ_G0028393) #22	Hibadh (MGP_CAROLIEiJ_G0028394) #23	Tax1bp1 (MGP_CAROLIEiJ_G0028395) #24	Jazf1 (MGP_CAROLIEiJ_G0028396) #25	Creb5 (MGP_CAROLIEiJ_G0028397) #26	Tril (MGP_CAROLIEiJ_G0028398) #27	Cpvl (MGP_CAROLIEiJ_G0028399) #28	Chn2 (MGP_CAROLIEiJ_G0028400) #29	Prr15 (MGP_CAROLIEiJ_G0028401) #30	Wipf3 (MGP_CAROLIEiJ_G0028402) #31	Scrn1 (MGP_CAROLIEiJ_G0028403) #32	MGP_CAROLIEiJ_G0028404 #33	Plekha8 (MGP_CAROLIEiJ_G0028405) #35	Mturn (MGP_CAROLIEiJ_G0028406) #36	Znrf2 (MGP_CAROLIEiJ_G0028407) #37	Nod1 (MGP_CAROLIEiJ_G0028408)
Shrew mouse	MODERN SPECIES	11	MGP_PahariEiJ_G0022128 ##7	Snx10 (MGP_PahariEiJ_G0022129) #8	Skap2 (MGP_PahariEiJ_G0022130) #9	Hoxa1 (MGP_PahariEiJ_G0022131) #11	Hoxa2 (MGP_PahariEiJ_G0022132) #12	MGP_PahariEiJ_G0022133	Hoxa3 (MGP_PahariEiJ_G0022134) #13	Hoxa4 (MGP_PahariEiJ_G0022135) #14	Hoxa5 (MGP_PahariEiJ_G0022136) #15	Hoxa6 (MGP_PahariEiJ_G0022137) #16	Hoxa7 (MGP_PahariEiJ_G0022138) #17	Hoxa9 (MGP_PahariEiJ_G0022139) #18	Hoxa10 (MGP_PahariEiJ_G0022140)	Hoxa11 (MGP_PahariEiJ_G0022141) #20	Hoxa13 (MGP_PahariEiJ_G0022142) #21	Evx1 (MGP_PahariEiJ_G0022143) #22	Hibadh (MGP_PahariEiJ_G0022144) #23	Tax1bp1 (MGP_PahariEiJ_G0022145) #24	Jazf1 (MGP_PahariEiJ_G0022146) #25	Creb5 (MGP_PahariEiJ_G0022147) #26	Tril (MGP_PahariEiJ_G0022148) #27	Cpvl (MGP_PahariEiJ_G0022149) #28	Chn2 (MGP_PahariEiJ_G0022150) #29	Prr15 (MGP_PahariEiJ_G0022151) #30	Wipf3 (MGP_PahariEiJ_G0022152) #31	Scrn1 (MGP_PahariEiJ_G0022153) #32	Fkbp14 (MGP_PahariEiJ_G0022154) #33	Plekha8 (MGP_PahariEiJ_G0022155) #35	Mturn (MGP_PahariEiJ_G0022156) #36	Znrf2 (MGP_PahariEiJ_G0022157) #37	Nod1 (MGP_PahariEiJ_G0022158)
Rat	MODERN SPECIES	14	Snx10 (ENSRNOG00000011944) #8	ENSRNOG00000064847	Skap2 (ENSRNOG00000012228) #9	Hoxa1 (ENSRNOG00000005628) #11	Hoxa2 (ENSRNOG00000005968) #12	Hoxa3 (ENSRNOG00000006281) #13	Hoxa4 (ENSRNOG00000027365) #14	LOC103692127 (ENSRNOG00000047951) #15	LOC100911511 (ENSRNOG00000048917) #16	Hoxa7 (ENSRNOG00000046361) #17	Hoxa9 (ENSRNOG00000064322) #18	LOC100911668 (ENSRNOG00000065199)	Hoxa11 (ENSRNOG00000059870) #20	Hoxa11-as (ENSRNOG00000050564)	Hoxa13 (ENSRNOG00000057061) #21	Evx1 (ENSRNOG00000046734) #22	Hibadh (ENSRNOG00000008063) #23	ENSRNOG00000033407	ENSRNOG00000043170	AABR07060591.1 (ENSRNOG00000059195)	Tax1bp1 (ENSRNOG00000008393) #24	Jazf1 (ENSRNOG00000027026) #25	ENSRNOG00000068681	Creb5 (ENSRNOG00000008622) #26	Tril (ENSRNOG00000026941) #27	Cpvl (ENSRNOG00000009172) #28	Chn2 (ENSRNOG00000009411) #29	Prr15 (ENSRNOG00000009564) #30	Wipf3 (ENSRNOG00000009571) #31	Scrn1 (ENSRNOG00000009636) #32	Fkbp14 (ENSRNOG00000009886) #33
Upper Galilee mountains blind mole rat	MODERN SPECIES	1152	Snx10 (ENSNGAG00000006392) #8	ENSNGAG00000010519	Skap2 (ENSNGAG00000016991) #9	Hoxa1 (ENSNGAG00000021363) #11	Hoxa2 (ENSNGAG00000014874) #12	Hoxa3 (ENSNGAG00000016765) #13	Hoxa4 (ENSNGAG00000022510) #14	Hoxa5 (ENSNGAG00000023140) #15	Hoxa6 (ENSNGAG00000012897) #16	Hoxa7 (ENSNGAG00000021697) #17	Hoxa9 (ENSNGAG00000016754) #18	ENSNGAG00000017228 #19	ENSNGAG00000013764	Hoxa11 (ENSNGAG00000023780) #20	Hoxa13 (ENSNGAG00000024186) #21	Evx1 (ENSNGAG00000001633) #22	Hibadh (ENSNGAG00000011196) #23	Tax1bp1 (ENSNGAG00000023119) #24	Jazf1 (ENSNGAG00000015532) #25	Creb5 (ENSNGAG00000024347) #26	Tril (ENSNGAG00000012621) #27	Cpvl (ENSNGAG00000024201) #28	Chn2 (ENSNGAG00000023838) #29	Prr15 (ENSNGAG00000019885) #30	Wipf3 (ENSNGAG00000018374) #31	Scrn1 (ENSNGAG00000023616) #32	Fkbp14 (ENSNGAG00000004013) #33	Plekha8 (ENSNGAG00000007347) #35	Mturn (ENSNGAG00000005393) #36	ENSNGAG00000022289 #37	Nod1 (ENSNGAG00000023371)
Lesser Egyptian jerboa	MODERN SPECIES	49	ENSJJAG00000014919	Snx10 (ENSJJAG00000010400) #8	Skap2 (ENSJJAG00000009704) #9	Hoxa1 (ENSJJAG00000023032) #11	Hoxa2 (ENSJJAG00000021712) #12	ENSJJAG00000021517 #14	Hoxa5 (ENSJJAG00000011757) #15	Hoxa6 (ENSJJAG00000017936) #16	Hoxa3 (ENSJJAG00000014001) #13	Hoxa7 (ENSJJAG00000001940) #17	Hoxa9 (ENSJJAG00000003182) #18	ENSJJAG00000020521	ENSJJAG00000013637 #19	Hoxa11 (ENSJJAG00000018070) #20	ENSJJAG00000016730 #21	Evx1 (ENSJJAG00000022445) #22	Hibadh (ENSJJAG00000008176) #23	ENSJJAG00000023777 #24	Jazf1 (ENSJJAG00000023495) #25	Creb5 (ENSJJAG00000015436) #26	Tril (ENSJJAG00000019712) #27	Cpvl (ENSJJAG00000008362) #28	Chn2 (ENSJJAG00000023189) #29	Prr15 (ENSJJAG00000010733) #30	Wipf3 (ENSJJAG00000014772) #31	Scrn1 (ENSJJAG00000017248) #32	Fkbp14 (ENSJJAG00000019945) #33	Plekha8 (ENSJJAG00000013522) #35	Mturn (ENSJJAG00000019476) #36	ENSJJAG00000018369 #37	Nod1 (ENSJJAG00000010878)
Kangaroo rat	MODERN SPECIES	395	ENSDORG00000005487 #7	Snx10 (ENSDORG00000028812) #8	Skap2 (ENSDORG00000009682) #9	Hoxa1 (ENSDORG00000006311) #11	Hoxa2 (ENSDORG00000006312) #12	Hoxa4 (ENSDORG00000006316) #14	Hoxa3 (ENSDORG00000027678) #13	Hoxa5 (ENSDORG00000025053) #15	Hoxa6 (ENSDORG00000006319) #16	Hoxa7 (ENSDORG00000006321) #17	Hoxa9 (ENSDORG00000006323) #18	ENSDORG00000029112	ENSDORG00000028643 #19	Hoxa11 (ENSDORG00000006326) #20	Hoxa13 (ENSDORG00000006328) #21	Evx1 (ENSDORG00000024747) #22	Hibadh (ENSDORG00000002792) #23	ENSDORG00000030184 #24	Jazf1 (ENSDORG00000029172) #25	Creb5 (ENSDORG00000010434) #26	Tril (ENSDORG00000025363) #27	Cpvl (ENSDORG00000012786) #28	Chn2 (ENSDORG00000003980) #29	Prr15 (ENSDORG00000028597) #30	Wipf3 (ENSDORG00000004081) #31	ENSDORG00000028313	Scrn1 (ENSDORG00000004083) #32	Fkbp14 (ENSDORG00000013417) #33	Plekha8 (ENSDORG00000013418) #35	Mturn (ENSDORG00000029215) #36	ENSDORG00000023424
Lagomorpha	ANCESTRAL SPECIES	39	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b #7	ENSGT00940000156007 #8	ENSGT00390000017856.a #9	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000162440	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #35	ENSGT00940000159017.a.a #37	ENSGT00940000157845	ENSGT00500000044921.b
Rabbit	MODERN SPECIES	1	ENSOCUG00000026859	ENSOCUG00000002464 #7	SNX10 (ENSOCUG00000004744) #8	SKAP2 (ENSOCUG00000011330) #9	ENSOCUG00000022860	HOXA1 (ENSOCUG00000015215) #11	HOXA2 (ENSOCUG00000015205) #12	HOXA3 (ENSOCUG00000027405) #13	ENSOCUG00000015190 #14	HOXA5 (ENSOCUG00000029580) #15	HOXA7 (ENSOCUG00000015183) #17	HOXA9 (ENSOCUG00000020585) #18	HOXA10 (ENSOCUG00000029439)	HOXA11 (ENSOCUG00000015170) #20	HOXA13 (ENSOCUG00000024694) #21	EVX1 (ENSOCUG00000015159) #22	HIBADH (ENSOCUG00000010349) #23	TAX1BP1 (ENSOCUG00000012730) #24	JAZF1 (ENSOCUG00000012738) #25	ENSOCUG00000026115	CREB5 (ENSOCUG00000003639) #26	ENSOCUG00000026897 #27	CPVL (ENSOCUG00000016573) #28	ENSOCUG00000009401 #29	PRR15 (ENSOCUG00000009403) #30	WIPF3 (ENSOCUG00000000802) #31	SCRN1 (ENSOCUG00000000804) #32	FKBP14 (ENSOCUG00000000805) #33	PLEKHA8 (ENSOCUG00000000807) #35	ENSOCUG00000036408	ENSOCUG00000036913 #37
Pika	MODERN SPECIES	26					HOXA1 (ENSOPRG00000010385) #11	ENSOPRG00000010388	HOXA3 (ENSOPRG00000010401) #13	ENSOPRG00000010411	ENSOPRG00000010425	HOXA5 (ENSOPRG00000010429) #15	HOXA6 (ENSOPRG00000010431) #16	HOXA7 (ENSOPRG00000010447) #17	HOXA9 (ENSOPRG00000010452) #18	HOXA10 (ENSOPRG00000010473)	HOXA13 (ENSOPRG00000010498) #21	EVX1 (ENSOPRG00000010513) #22