Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00940000153305.c.e.b #8	ENSGT00940000156007 #9	ENSGT00390000017856.a #10	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #34	ENSGT00500000045044 #35	ENSGT00460000041667 #36	ENSGT00940000159017.a.a #37
Hystricomorpha_a	ANCESTRAL SPECIES	41	ENSGT00940000153305.c.e.b #8	ENSGT00940000156007 #9	ENSGT00390000017856.a #10	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #34	ENSGT00500000045044 #35	ENSGT00460000041667 #36	ENSGT00940000159017.a.a #37
Hystricomorpha_b	ANCESTRAL SPECIES	39	ENSGT00940000153305.c.e.b #8	ENSGT00940000156007 #9	ENSGT00390000017856.a #10	ENSGT00940000157315 #11	ENSGT00940000162533 #12	ENSGT00940000159522 #13	ENSGT00940000158988.a.a #14	ENSGT00940000159894 #15	ENSGT00940000161585 #16	ENSGT00940000161013 #17	ENSGT00940000161864 #18	ENSGT00940000163268	ENSGT00940000162440 #19	ENSGT00940000158311 #20	ENSGT00940000162322 #21	ENSGT00940000159854 #22	ENSGT00940000155255 #23	ENSGT00950000183025.b.a #24	ENSGT00390000003635 #25	ENSGT00940000156420 #26	ENSGT00940000161975 #27	ENSGT00940000159498 #28	ENSGT01030000234635.a.b.a.a #29	ENSGT00940000154534.b.b #30	ENSGT00940000160267 #31	ENSGT00390000013474.b.b #32	ENSGT00940000157858 #33	ENSGT00940000157288 #34	ENSGT00500000045044 #35	ENSGT00460000041667 #36	ENSGT00940000159017.a.a #37
Long-tailed chinchilla	MODERN SPECIES	117	ENSCLAG00000014058 #7	ENSCLAG00000012267 #8	ENSCLAG00000005337 #9	SKAP2 (ENSCLAG00000006785) #10	HOXA1 (ENSCLAG00000014364) #11	HOXA2 (ENSCLAG00000016180) #12	HOXA3 (ENSCLAG00000006878) #13	ENSCLAG00000008251 #14	HOXA5 (ENSCLAG00000004908) #15	HOXA6 (ENSCLAG00000006012) #16	HOXA7 (ENSCLAG00000008671) #17	HOXA9 (ENSCLAG00000010294) #18	HOXA10 (ENSCLAG00000015066) #19	HOXA11 (ENSCLAG00000009905) #20	HOXA13 (ENSCLAG00000010361) #21	EVX1 (ENSCLAG00000010646) #22	HIBADH (ENSCLAG00000010236) #23	TAX1BP1 (ENSCLAG00000013263) #24	JAZF1 (ENSCLAG00000009988) #25	CREB5 (ENSCLAG00000011091) #26	TRIL (ENSCLAG00000018111) #27	CPVL (ENSCLAG00000009635) #28	CHN2 (ENSCLAG00000014307) #29	PRR15 (ENSCLAG00000010326) #30	WIPF3 (ENSCLAG00000011493) #31	SCRN1 (ENSCLAG00000010543) #32	FKBP14 (ENSCLAG00000010774) #33	PLEKHA8 (ENSCLAG00000011413) #34	MTURN (ENSCLAG00000011854) #35	ENSCLAG00000016063 #36	ENSCLAG00000010973 #37
Degu	MODERN SPECIES	56	ENSODEG00000019395	SKAP2 (ENSODEG00000008150) #10	ENSODEG00000009507	HOXA1 (ENSODEG00000008589) #11	HOXA2 (ENSODEG00000009002) #12	HOXA3 (ENSODEG00000009161) #13	ENSODEG00000007568	HOXA5 (ENSODEG00000007850) #15	HOXA6 (ENSODEG00000007928) #16	HOXA7 (ENSODEG00000008762) #17	HOXA9 (ENSODEG00000009347) #18	ENSODEG00000009545	ENSODEG00000009794 #19	HOXA11 (ENSODEG00000010282) #20	HOXA13 (ENSODEG00000007693) #21	EVX1 (ENSODEG00000007853) #22	HIBADH (ENSODEG00000010442) #23	ENSODEG00000007935	ENSODEG00000019519	ENSODEG00000011639	ENSODEG00000011321 #24	JAZF1 (ENSODEG00000009398) #25	CREB5 (ENSODEG00000008640) #26	TRIL (ENSODEG00000019862) #27	ENSODEG00000009470 #28	ENSODEG00000008241	CHN2 (ENSODEG00000008637) #29	PRR15 (ENSODEG00000019540) #30	ENSODEG00000019511	WIPF3 (ENSODEG00000007842) #31	SCRN1 (ENSODEG00000008733) #32
Guinea pig	MODERN SPECIES	44	HNRNPA2B1 (ENSCPOG00000036630) #7	CBX3 (ENSCPOG00000015168) #8	SNX10 (ENSCPOG00000006831) #9	ENSCPOG00000037875	SKAP2 (ENSCPOG00000000258) #10	HOXA1 (ENSCPOG00000037658) #11	HOXA2 (ENSCPOG00000034959) #12	HOXA3 (ENSCPOG00000030159) #13	ENSCPOG00000032985 #14	HOXA5 (ENSCPOG00000035800) #15	HOXA6 (ENSCPOG00000032757) #16	HOXA9 (ENSCPOG00000011365) #18	ENSCPOG00000031122	HOXA11 (ENSCPOG00000039723) #20	HOXA13 (ENSCPOG00000033640) #21	EVX1 (ENSCPOG00000011370) #22	HIBADH (ENSCPOG00000020159) #23	TAX1BP1 (ENSCPOG00000000826) #24	JAZF1 (ENSCPOG00000034687) #25	CREB5 (ENSCPOG00000013545) #26	TRIL (ENSCPOG00000024604) #27	CPVL (ENSCPOG00000013406) #28	CHN2 (ENSCPOG00000013533) #29	WIPF3 (ENSCPOG00000006935) #31	SCRN1 (ENSCPOG00000006943) #32	FKBP14 (ENSCPOG00000040393) #33	PLEKHA8 (ENSCPOG00000005025) #34	MTURN (ENSCPOG00000031591) #35	ENSCPOG00000027612 #37	NOD1 (ENSCPOG00000014360)	GGCT (ENSCPOG00000024870)
Naked mole-rat female	MODERN SPECIES	5	ENSHGLG00000014772 #8	ENSHGLG00000050650 #9	SKAP2 (ENSHGLG00000042970) #10	ENSHGLG00000045030	ENSHGLG00000036434	HOXA1 (ENSHGLG00000018117) #11	HOXA2 (ENSHGLG00000017804) #12	HOXA3 (ENSHGLG00000046038) #13	HOXA4 (ENSHGLG00000048807) #14	HOXA5 (ENSHGLG00000016863) #15	ENSHGLG00000043027 #17	HOXA9 (ENSHGLG00000045326) #18	HOXA10 (ENSHGLG00000050027) #19	HOXA11 (ENSHGLG00000009266) #20	HOXA13 (ENSHGLG00000039960) #21	EVX1 (ENSHGLG00000005868) #22	HIBADH (ENSHGLG00000005354) #23	ENSHGLG00000047390	ENSHGLG00000016256 #24	JAZF1 (ENSHGLG00000049016) #25	ENSHGLG00000016063	CREB5 (ENSHGLG00000018417) #26	TRIL (ENSHGLG00000037451) #27	CPVL (ENSHGLG00000016195) #28	CHN2 (ENSHGLG00000033880) #29	ENSHGLG00000017765	PRR15 (ENSHGLG00000047965) #30	SCRN1 (ENSHGLG00000008257) #32	FKBP14 (ENSHGLG00000006567) #33	ENSHGLG00000007305	PLEKHA8 (ENSHGLG00000005404) #34