Rodentia	ANCESTRAL SPECIES	17	ENSGT00390000012267	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a #16	ENSGT00950000182755.b.a.a.a.a.a.b.d.b	ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00510000049338	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34
Rodentia_B	ANCESTRAL SPECIES	42										ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34	ENSGT00940000156887 #35
Kangaroo rat	MODERN SPECIES	498										ENSDORG00000028475 #16	Acp5 (ENSDORG00000012722) #17	Elof1 (ENSDORG00000025375) #18	Cnn1 (ENSDORG00000003433) #19	Ecsit (ENSDORG00000003435) #20	Zfp653 (ENSDORG00000007511) #21	Elavl3 (ENSDORG00000002538) #22	Prkcsh (ENSDORG00000002536) #23	ENSDORG00000002533 #24	Rgl3 (ENSDORG00000002531) #25	Epor (ENSDORG00000002529) #26	Plppr2 (ENSDORG00000002524) #27	Tmem205 (ENSDORG00000002522) #28	Rab3d (ENSDORG00000023961) #29	Angptl8 (ENSDORG00000006854) #30	Dock6 (ENSDORG00000006851) #31	ENSDORG00000023590 #32	Spc24 (ENSDORG00000029533) #33	Ldlr (ENSDORG00000011310) #34	Smarca4 (ENSDORG00000002544) #35	Timm29 (ENSDORG00000013397) #36	Yipf2 (ENSDORG00000013396) #37
Myomorpha	ANCESTRAL SPECIES	51										ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34	ENSGT00940000156887 #35
Lesser Egyptian jerboa	MODERN SPECIES	143	ENSJJAG00000000847	ENSJJAG00000013702	Dcc (ENSJJAG00000005791)	ENSJJAG00000022704	Vmn2r118 (ENSJJAG00000007013)	ENSJJAG00000022934	ENSJJAG00000022536	ENSJJAG00000010074	ENSJJAG00000009767	ENSJJAG00000009435	Acp5 (ENSJJAG00000002644) #17	Elof1 (ENSJJAG00000001405) #18	Cnn1 (ENSJJAG00000001001) #19	ENSJJAG00000000325 #20	Zfp653 (ENSJJAG00000000128) #21	Elavl3 (ENSJJAG00000023513) #22	Prkcsh (ENSJJAG00000021556) #23	ENSJJAG00000020511 #24	Rgl3 (ENSJJAG00000012550) #25	Epor (ENSJJAG00000005085) #26	Swsap1 (ENSJJAG00000004050)	Plppr2 (ENSJJAG00000001171) #27	Ccdc159 (ENSJJAG00000000427)	Tmem205 (ENSJJAG00000000261) #28	ENSJJAG00000000215 #29	ENSJJAG00000013629	Angptl8 (ENSJJAG00000022577) #30	Dock6 (ENSJJAG00000019330) #31	Kank2 (ENSJJAG00000017464) #32	Spc24 (ENSJJAG00000017112) #33	ENSJJAG00000013464
Muroidea	ANCESTRAL SPECIES	58										ENSGT00610000087446	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34	ENSGT00940000156887 #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	850								Pigyl (ENSNGAG00000018305)	Acp5 (ENSNGAG00000015867) #17	ENSNGAG00000015124	Elof1 (ENSNGAG00000013519) #18	Cnn1 (ENSNGAG00000013210) #19	Ecsit (ENSNGAG00000021047) #20	ENSNGAG00000019641 #21	ENSNGAG00000003102	Elavl3 (ENSNGAG00000000968) #22	Prkcsh (ENSNGAG00000017066) #23	ENSNGAG00000013146 #24	Rgl3 (ENSNGAG00000015700) #25	Epor (ENSNGAG00000014154) #26	ENSNGAG00000013744	Plppr2 (ENSNGAG00000012541) #27	Ccdc159 (ENSNGAG00000017828)	Tmem205 (ENSNGAG00000017217) #28	Rab3d (ENSNGAG00000016962) #29	Angptl8 (ENSNGAG00000016227) #30	Dock6 (ENSNGAG00000004348) #31	ENSNGAG00000001359 #32	Spc24 (ENSNGAG00000005326) #33	Ldlr (ENSNGAG00000018614) #34	Smarca4 (ENSNGAG00000021852) #35
Muroidea_A	ANCESTRAL SPECIES	23	ENSGT00940000155094	ENSGT00940000156485	ENSGT00390000000803	ENSGT00940000162896	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00940000153505.a.a.c.a.a.a.b.a.b	ENSGT00940000153505.a.a.c.a.a.a.a.b	ENSGT00940000164244.a	ENSGT00610000087446	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34	ENSGT00940000156887 #35
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000156485	ENSGT00390000000803	ENSGT00940000162896	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00940000153505.a.a.c.a.a.a.b.a.b	ENSGT00940000153505.a.a.c.a.a.a.a.b	ENSGT00950000182890.A.a.b.b.b	ENSGT00940000164244.a	ENSGT00610000087446	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34	ENSGT00940000156887 #35
Cricetinae	ANCESTRAL SPECIES	30	ENSGT00940000155094	ENSGT00940000156485	ENSGT00390000000803	ENSGT00940000162896	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00940000153505.a.a.c.a.a.a.b.a.b	ENSGT00940000153505.a.a.c.a.a.a.a.b	ENSGT00950000182890.A.a.b.b.b	ENSGT00610000087446	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34	ENSGT00940000156887 #35
Golden Hamster	MODERN SPECIES	700	ENSMAUG00000016802	Bmper (ENSMAUG00000017842)	Bbs9 (ENSMAUG00000002422)	Rp9 (ENSMAUG00000006605)	9530077C05Rik (ENSMAUG00000018284)	ENSMAUG00000006644	Anln (ENSMAUG00000010570)	Zfp810 (ENSMAUG00000011262)	Zfp599 (ENSMAUG00000000404)	ENSMAUG00000008928	Pigyl (ENSMAUG00000001605)	Acp5 (ENSMAUG00000012370) #17	Elof1 (ENSMAUG00000001142) #18	Cnn1 (ENSMAUG00000007541) #19	ENSMAUG00000008578 #20	Elavl3 (ENSMAUG00000016478) #22	Prkcsh (ENSMAUG00000009632) #23	Odad3 (ENSMAUG00000003747)	Rgl3 (ENSMAUG00000015321) #25	Epor (ENSMAUG00000015533) #26	Swsap1 (ENSMAUG00000018796)	Plppr2 (ENSMAUG00000012058) #27	Ccdc159 (ENSMAUG00000002172)	Rab3d (ENSMAUG00000011273) #29	Dock6 (ENSMAUG00000020369) #31	Angptl8 (ENSMAUG00000014435) #30	Kank2 (ENSMAUG00000011226) #32	Spc24 (ENSMAUG00000016753) #33	Ldlr (ENSMAUG00000018237) #34	Smarca4 (ENSMAUG00000020731) #35	Timm29 (ENSMAUG00000016236) #36
Chinese hamster chok1gshd	MODERN SPECIES	189	Dpy19l1 (ENSCGRG00001005835)	Npsr1 (ENSCGRG00001018798)	Bmper (ENSCGRG00001024435)	Bbs9 (ENSCGRG00001023803)	Rp9 (ENSCGRG00001013075)	9530077C05Rik (ENSCGRG00001011224)	Anln (ENSCGRG00001013117)	Zfp810 (ENSCGRG00001007369)	Zfp809 (ENSCGRG00001001284)	Pigyl (ENSCGRG00001000847)	Acp5 (ENSCGRG00001020275) #17	ENSCGRG00001013425 #18	Cnn1 (ENSCGRG00001021689) #19	Ecsit (ENSCGRG00001016909) #20	Zfp653 (ENSCGRG00001012039) #21	Elavl3 (ENSCGRG00001018927) #22	Prkcsh (ENSCGRG00001022593) #23	Odad3 (ENSCGRG00001017980)	Rgl3 (ENSCGRG00001012320) #25	Epor (ENSCGRG00001009147) #26	Swsap1 (ENSCGRG00001003241)	Plppr2 (ENSCGRG00001018956) #27	Ccdc159 (ENSCGRG00001023310)	Tmem205 (ENSCGRG00001022126) #28	Rab3d (ENSCGRG00001019307) #29	Angptl8 (ENSCGRG00001017874) #30	Dock6 (ENSCGRG00001024445) #31	Kank2 (ENSCGRG00001019422) #32	Spc24 (ENSCGRG00001015236) #33	Ldlr (ENSCGRG00001014331) #34	Smarca4 (ENSCGRG00001016732) #35
Cricetidae_B	ANCESTRAL SPECIES	16	ENSGT00940000156485	ENSGT00390000000803	ENSGT00940000162896	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00940000153505.a.a.c.a.a.a.b.a.b	ENSGT00940000153505.a.a.c.a.a.a.a.b	ENSGT00950000182890.A.a.b.b.b	ENSGT00940000164244.a	ENSGT00610000087446	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34	ENSGT00940000156887 #35
Northern American deer mouse	MODERN SPECIES	20	ENSPEMG00000022527	Bbs9 (ENSPEMG00000029074)	Rp9 (ENSPEMG00000012547)	9530077C05Rik (ENSPEMG00000009878)	Anln (ENSPEMG00000020577)	Zfp810 (ENSPEMG00000025446)	Zfp599 (ENSPEMG00000009987)	ENSPEMG00000028167	Zfp872 (ENSPEMG00000021752)	Pigyl (ENSPEMG00000027961)	Acp5 (ENSPEMG00000007088) #17	Elof1 (ENSPEMG00000028590) #18	Cnn1 (ENSPEMG00000023941) #19	Ecsit (ENSPEMG00000011472) #20	Zfp653 (ENSPEMG00000022827) #21	Elavl3 (ENSPEMG00000031081) #22	Prkcsh (ENSPEMG00000023961) #23	Odad3 (ENSPEMG00000020738)	Rgl3 (ENSPEMG00000020927) #25	Epor (ENSPEMG00000020463) #26	Swsap1 (ENSPEMG00000017184)	Plppr2 (ENSPEMG00000020521) #27	Ccdc159 (ENSPEMG00000014545)	Tmem205 (ENSPEMG00000020320) #28	Rab3d (ENSPEMG00000031189) #29	ENSPEMG00000014770	Angptl8 (ENSPEMG00000015174) #30	Dock6 (ENSPEMG00000010133) #31	Kank2 (ENSPEMG00000000736) #32	Spc24 (ENSPEMG00000009453) #33	Ldlr (ENSPEMG00000021260) #34
Prairie vole	MODERN SPECIES	13	Bmper (ENSMOCG00000021320)	Bbs9 (ENSMOCG00000014729)	Rp9 (ENSMOCG00000020161)	9530077C05Rik (ENSMOCG00000017716)	Anln (ENSMOCG00000013010)	Zfp810 (ENSMOCG00000002039)	Zfp599 (ENSMOCG00000023026)	ENSMOCG00000022973	ENSMOCG00000018031	Pigyl (ENSMOCG00000017172)	Acp5 (ENSMOCG00000015161) #17	ENSMOCG00000021126 #18	Cnn1 (ENSMOCG00000010594) #19	Ecsit (ENSMOCG00000001978) #20	Zfp653 (ENSMOCG00000016821) #21	Elavl3 (ENSMOCG00000002046) #22	Prkcsh (ENSMOCG00000002146) #23	Odad3 (ENSMOCG00000015552)	Rgl3 (ENSMOCG00000014876) #25	Epor (ENSMOCG00000013170) #26	Swsap1 (ENSMOCG00000010976)	Plppr2 (ENSMOCG00000011755) #27	Ccdc159 (ENSMOCG00000010436)	Tmem205 (ENSMOCG00000003259) #28	Rab3d (ENSMOCG00000002683) #29	Angptl8 (ENSMOCG00000022983) #30	Dock6 (ENSMOCG00000015812) #31	Kank2 (ENSMOCG00000008426) #32	Spc24 (ENSMOCG00000023025) #33	Ldlr (ENSMOCG00000016718) #34	Smarca4 (ENSMOCG00000022209) #35
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000155094	ENSGT00940000156485	ENSGT00390000000803	ENSGT00940000162896	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00940000153505.a.a.c.a.a.a.b.a.b	ENSGT00940000153505.a.a.c.a.a.a.a.b	ENSGT00940000164244.a	ENSGT00610000087446	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34	ENSGT00940000156887 #35
Rat	MODERN SPECIES	18	ENSRNOG00000063092	Bmper (ENSRNOG00000015357)	Bbs9 (ENSRNOG00000015189)	Rp9 (ENSRNOG00000029456)	Matcap2 (ENSRNOG00000026979)	Anln (ENSRNOG00000014343)	Zfp717 (ENSRNOG00000014331)	LOC103690166 (ENSRNOG00000055496)	LOC100911320 (ENSRNOG00000069976)	LOC120094092 (ENSRNOG00000059163)	Acp5 (ENSRNOG00000046261) #17	Elof1 (ENSRNOG00000014284) #18	Cnn1 (ENSRNOG00000027736) #19	Ecsit (ENSRNOG00000014128) #20	Zfp653 (ENSRNOG00000014065) #21	Elavl3 (ENSRNOG00000013752) #22	Prkcsh (ENSRNOG00000013360) #23	Odad3 (ENSRNOG00000013263)	Epor (ENSRNOG00000012619) #26	Swsap1 (ENSRNOG00000012604)	Plppr2 (ENSRNOG00000012164) #27	Ccdc159 (ENSRNOG00000011799)	Tmem205 (ENSRNOG00000011747) #28	Rab3d (ENSRNOG00000011582) #29	Angptl8 (ENSRNOG00000011490) #30	Dock6 (ENSRNOG00000010652) #31	Kank2 (ENSRNOG00000010643) #32	Spc24 (ENSRNOG00000029862) #33	Ldlr (ENSRNOG00000009946) #34	Smarca4 (ENSRNOG00000009271) #35	Yipf2 (ENSRNOG00000022043) #37
Mus	ANCESTRAL SPECIES	4	ENSGT00940000156485	ENSGT00390000000803	ENSGT00940000162896	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00940000153505.a.a.c.a.a.a.b.a.b	ENSGT00940000153505.a.a.c.a.a.a.a.b	ENSGT00940000153505.a.a.c.a.a.a.b.a.a.a	ENSGT00940000164244.a	ENSGT00610000087446	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34	ENSGT00940000156887 #35
Shrew mouse	MODERN SPECIES	1	Bmper (MGP_PahariEiJ_G0014775)	Bbs9 (MGP_PahariEiJ_G0014774)	Rp9 (MGP_PahariEiJ_G0014773)	9530077C05Rik (MGP_PahariEiJ_G0014772)	Anln (MGP_PahariEiJ_G0014771)	Zfp810 (MGP_PahariEiJ_G0014770)	Zfp599 (MGP_PahariEiJ_G0014769)	Zfp809 (MGP_PahariEiJ_G0014768)	MGP_PahariEiJ_G0014767	Pigyl (MGP_PahariEiJ_G0014766)	Acp5 (MGP_PahariEiJ_G0014765) #17	Elof1 (MGP_PahariEiJ_G0014764) #18	Cnn1 (MGP_PahariEiJ_G0014763) #19	Ecsit (MGP_PahariEiJ_G0014762) #20	Zfp653 (MGP_PahariEiJ_G0014761) #21	Elavl3 (MGP_PahariEiJ_G0014760) #22	Prkcsh (MGP_PahariEiJ_G0014759) #23	Odad3 (MGP_PahariEiJ_G0014758)	Rgl3 (MGP_PahariEiJ_G0014757) #25	Epor (MGP_PahariEiJ_G0014756) #26	Swsap1 (MGP_PahariEiJ_G0014755)	Plppr2 (MGP_PahariEiJ_G0014754) #27	Ccdc159 (MGP_PahariEiJ_G0014753)	Tmem205 (MGP_PahariEiJ_G0014752) #28	Rab3d (MGP_PahariEiJ_G0014751) #29	Angptl8 (MGP_PahariEiJ_G0014750) #30	Dock6 (MGP_PahariEiJ_G0014749) #31	Kank2 (MGP_PahariEiJ_G0014748) #32	MGP_PahariEiJ_G0014747 #33	Ldlr (MGP_PahariEiJ_G0014746) #34	Smarca4 (MGP_PahariEiJ_G0014745) #35
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000156485	ENSGT00390000000803	ENSGT00940000162896	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00940000153505.a.a.c.a.a.a.b.a.b	ENSGT00940000153505.a.a.c.a.a.a.a.b	ENSGT00940000153505.a.a.c.a.a.a.b.a.a.a	ENSGT00940000164244.a	ENSGT00610000087446	ENSGT00390000016735 #17	ENSGT00390000000053.i #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34	ENSGT00940000156887 #35
Ryukyu mouse	MODERN SPECIES	18	MGP_CAROLIEiJ_G0031909	MGP_CAROLIEiJ_G0031908	Rp9 (MGP_CAROLIEiJ_G0031907)	9530077C05Rik (MGP_CAROLIEiJ_G0031906)	MGP_CAROLIEiJ_G0031905	Zfp810 (MGP_CAROLIEiJ_G0031904)	Zfp599 (MGP_CAROLIEiJ_G0031903)	Zfp809 (MGP_CAROLIEiJ_G0031902)	MGP_CAROLIEiJ_G0031901	Pigyl (MGP_CAROLIEiJ_G0031900)	Acp5 (MGP_CAROLIEiJ_G0031899) #17	Elof1 (MGP_CAROLIEiJ_G0031898) #18	Cnn1 (MGP_CAROLIEiJ_G0031897) #19	Ecsit (MGP_CAROLIEiJ_G0031896) #20	Zfp653 (MGP_CAROLIEiJ_G0031895) #21	Elavl3 (MGP_CAROLIEiJ_G0031894) #22	Prkcsh (MGP_CAROLIEiJ_G0031893) #23	Odad3 (MGP_CAROLIEiJ_G0031892)	Rgl3 (MGP_CAROLIEiJ_G0031891) #25	Epor (MGP_CAROLIEiJ_G0031890) #26	Swsap1 (MGP_CAROLIEiJ_G0031889)	Plppr2 (MGP_CAROLIEiJ_G0031888) #27	Ccdc159 (MGP_CAROLIEiJ_G0031887)	Tmem205 (MGP_CAROLIEiJ_G0031886) #28	Rab3d (MGP_CAROLIEiJ_G0031885) #29	Angptl8 (MGP_CAROLIEiJ_G0031884) #30	MGP_CAROLIEiJ_G0031883 #31	Kank2 (MGP_CAROLIEiJ_G0031882) #32	Spc24 (MGP_CAROLIEiJ_G0031881) #33	Ldlr (MGP_CAROLIEiJ_G0031880) #34	Smarca4 (MGP_CAROLIEiJ_G0031879) #35
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000156485	ENSGT00390000000803	ENSGT00940000162896	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00940000153505.a.a.c.a.a.a.b.a.b	ENSGT00940000153505.a.a.c.a.a.a.a.b	ENSGT00940000153505.a.a.c.a.a.a.b.a.a.a	ENSGT00940000164244.a	ENSGT00610000087446	ENSGT00390000016735 #17	ENSGT00390000000053.i #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34	ENSGT00940000156887 #35
Mouse	MODERN SPECIES	18	Bmper (ENSMUSG00000031963)	Bbs9 (ENSMUSG00000035919)	9530077C05Rik (ENSMUSG00000036411)	Rp9 (ENSMUSG00000032239)	Anln (ENSMUSG00000036777)	Zfp810 (ENSMUSG00000066829)	Zfp599 (ENSMUSG00000062794)	Zfp809 (ENSMUSG00000057982)	Zfp872 (ENSMUSG00000074472)	Pigyl (ENSMUSG00000010607)	Acp5 (ENSMUSG00000001348) #17	Elof1 (ENSMUSG00000013822) #18	Cnn1 (ENSMUSG00000001349) #19	Ecsit (ENSMUSG00000066839) #20	Zfp653 (ENSMUSG00000038895) #21	Elavl3 (ENSMUSG00000003410) #22	Prkcsh (ENSMUSG00000003402) #23	Odad3 (ENSMUSG00000039632)	Rgl3 (ENSMUSG00000040146) #25	Epor (ENSMUSG00000006235) #26	Swsap1 (ENSMUSG00000051238)	Plppr2 (ENSMUSG00000040563) #27	Ccdc159 (ENSMUSG00000006241)	Tmem205 (ENSMUSG00000040883) #28	Rab3d (ENSMUSG00000019066) #29	Angptl8 (ENSMUSG00000047822) #30	Dock6 (ENSMUSG00000032198) #31	Kank2 (ENSMUSG00000032194) #32	Spc24 (ENSMUSG00000074476) #33	Ldlr (ENSMUSG00000032193) #34	Smarca4 (ENSMUSG00000032187) #35
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000156485	ENSGT00390000000803	ENSGT00940000162896	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00940000153505.a.a.c.a.a.a.b.a.b	ENSGT00940000153505.a.a.c.a.a.a.a.b	ENSGT00940000153505.a.a.c.a.a.a.b.a.a.a	ENSGT00940000164244.a	ENSGT00610000087446	ENSGT00390000016735 #17	ENSGT00390000000053.i #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34	ENSGT00940000156887 #35
Steppe mouse	MODERN SPECIES	3115												Elof1 (ENSMSIG00000013619) #18	Cnn1 (ENSMSIG00000013662) #19	Ecsit (ENSMSIG00000013685) #20	Zfp653 (ENSMSIG00000013726) #21	Elavl3 (ENSMSIG00000013743) #22	Prkcsh (ENSMSIG00000013805) #23	Odad3 (ENSMSIG00000013901)	ENSMSIG00000013921 #25	ENSMSIG00000014716 #26	Swsap1 (ENSMSIG00000014781)	Plppr2 (ENSMSIG00000014788) #27	Ccdc159 (ENSMSIG00000014895)	ENSMSIG00000014964 #28	Rab3d (ENSMSIG00000014980) #29	Dock6 (ENSMSIG00000015052) #31	Angptl8 (ENSMSIG00000015367) #30	Kank2 (ENSMSIG00000015384) #32	Spc24 (ENSMSIG00000015419) #33	Ldlr (ENSMSIG00000015469) #34	Smarca4 (ENSMSIG00000015575) #35
spretus	MODERN SPECIES	18	Bbs9 (MGP_SPRETEiJ_G0033032)	MGP_SPRETEiJ_G0033031	Rp9 (MGP_SPRETEiJ_G0033030)	9530077C05Rik (MGP_SPRETEiJ_G0033029)	Anln (MGP_SPRETEiJ_G0033028)	Zfp810 (MGP_SPRETEiJ_G0033027)	Zfp599 (MGP_SPRETEiJ_G0033026)	Zfp809 (MGP_SPRETEiJ_G0033025)	MGP_SPRETEiJ_G0033024	Pigyl (MGP_SPRETEiJ_G0033023)	Acp5 (MGP_SPRETEiJ_G0033022) #17	Elof1 (MGP_SPRETEiJ_G0033021) #18	Cnn1 (MGP_SPRETEiJ_G0033020) #19	Ecsit (MGP_SPRETEiJ_G0033019) #20	Zfp653 (MGP_SPRETEiJ_G0033018) #21	MGP_SPRETEiJ_G0033017 #22	Prkcsh (MGP_SPRETEiJ_G0033016) #23	Odad3 (MGP_SPRETEiJ_G0033015)	Rgl3 (MGP_SPRETEiJ_G0033014) #25	Epor (MGP_SPRETEiJ_G0033013) #26	Plppr2 (MGP_SPRETEiJ_G0033012) #27	Ccdc159 (MGP_SPRETEiJ_G0033011)	Tmem205 (MGP_SPRETEiJ_G0033010) #28	Rab3d (MGP_SPRETEiJ_G0033009) #29	Angptl8 (MGP_SPRETEiJ_G0033008) #30	Dock6 (MGP_SPRETEiJ_G0033007) #31	Kank2 (MGP_SPRETEiJ_G0033006) #32	Spc24 (MGP_SPRETEiJ_G0033005) #33	Ldlr (MGP_SPRETEiJ_G0033004) #34	Smarca4 (MGP_SPRETEiJ_G0033003) #35	Timm29 (MGP_SPRETEiJ_G0033002) #36
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00390000012267	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a #16	ENSGT00950000182755.b.a.a.a.a.a.b.d.b	ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00510000049338	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00940000161972	ENSGT00390000006744	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000154063.C.a.b	ENSGT00940000160446	ENSGT00950000183047.c.a	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00940000162163	ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00510000049338	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	21	ALKBH7 (ENSHGLG00000018436)	ENSHGLG00000010702	ENSHGLG00000048812	ENSHGLG00000007120	ENSHGLG00000005716	ENSHGLG00000045280	ENSHGLG00000045808	ENSHGLG00000041157	ENSHGLG00000049858	ENSHGLG00000033621	ENSHGLG00000016971 #17	ENSHGLG00000015081 #18	CNN1 (ENSHGLG00000015039) #19	ECSIT (ENSHGLG00000015014) #20	ZNF653 (ENSHGLG00000015197) #21	ENSHGLG00000015199 #22	PRKCSH (ENSHGLG00000011876) #23	ODAD3 (ENSHGLG00000010231)	ENSHGLG00000032994 #25	EPOR (ENSHGLG00000017626) #26	SWSAP1 (ENSHGLG00000015941)	PLPPR2 (ENSHGLG00000015100) #27	ENSHGLG00000040073	TMEM205 (ENSHGLG00000014918) #28	RAB3D (ENSHGLG00000015577) #29	TSPAN16 (ENSHGLG00000017884)	DOCK6 (ENSHGLG00000009688) #31	ENSHGLG00000034129 #30	KANK2 (ENSHGLG00000006720) #32	SPC24 (ENSHGLG00000005561) #33	LDLR (ENSHGLG00000014530) #34
Naked mole-rat female	MODERN SPECIES	16	PDC (ENSHGLG00000007016)	ENSHGLG00000013464	TPR (ENSHGLG00000018823)	PRG4 (ENSHGLG00000037640)	HMCN1 (ENSHGLG00000019222)	ENSHGLG00000038341	IVNS1ABP (ENSHGLG00000003305)	SWT1 (ENSHGLG00000006542)	ENSHGLG00000003135	ENSHGLG00000004191	ENSHGLG00000021138	ENSHGLG00000013124	ENSHGLG00000040450	ENSHGLG00000036708	ENSHGLG00000007310	ENSHGLG00000019379 #22	ENSHGLG00000041312	ENSHGLG00000014856	ENSHGLG00000018157	ENSHGLG00000044661	ENSHGLG00000021029	ENSHGLG00000043630	ENSHGLG00000018727	COLGALT2 (ENSHGLG00000038139)	APOBEC4 (ENSHGLG00000040323)	RGL1 (ENSHGLG00000018901)	ARPC5 (ENSHGLG00000013926)	NCF2 (ENSHGLG00000018696)	ENSHGLG00000048289	ENSHGLG00000048693	SMG7 (ENSHGLG00000009353)
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000161972	ENSGT00390000006744	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000154063.C.a.b	ENSGT00940000160446	ENSGT00950000183047.c.a	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00940000162163	ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00510000049338	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34
Guinea pig	MODERN SPECIES	214									ENSCPOG00000021349	ZNF709 (ENSCPOG00000039326)	ACP5 (ENSCPOG00000001006) #17	ELOF1 (ENSCPOG00000040714) #18	CNN1 (ENSCPOG00000009855) #19	ECSIT (ENSCPOG00000020901) #20	ZNF653 (ENSCPOG00000010842) #21	ELAVL3 (ENSCPOG00000001793) #22	PRKCSH (ENSCPOG00000020528) #23	ODAD3 (ENSCPOG00000025979)	RGL3 (ENSCPOG00000009865) #25	EPOR (ENSCPOG00000004895) #26	SWSAP1 (ENSCPOG00000001918)	PLPPR2 (ENSCPOG00000005664) #27	ENSCPOG00000005662	TMEM205 (ENSCPOG00000026260) #28	RAB3D (ENSCPOG00000030555) #29	TSPAN16 (ENSCPOG00000020079)	ANGPTL8 (ENSCPOG00000030760) #30	DOCK6 (ENSCPOG00000026620) #31	KANK2 (ENSCPOG00000027433) #32	LDLR (ENSCPOG00000006816) #34	SMARCA4 (ENSCPOG00000015549) #35
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00940000161972	ENSGT00390000006744	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000154063.C.a.b	ENSGT00940000160446	ENSGT00950000183047.c.a	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00940000162163	ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00510000049338	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34
Long-tailed chinchilla	MODERN SPECIES	202	ENSCLAG00000009403	ENSCLAG00000009197	TNFSF14 (ENSCLAG00000008813)	C3 (ENSCLAG00000008464)	GPR108 (ENSCLAG00000012060)	TRIP10 (ENSCLAG00000009696)	SH2D3A (ENSCLAG00000009886)	VAV1 (ENSCLAG00000008423)	ENSCLAG00000011723	ZNF709 (ENSCLAG00000014910)	ACP5 (ENSCLAG00000013793) #17	ELOF1 (ENSCLAG00000013181) #18	CNN1 (ENSCLAG00000013547) #19	ECSIT (ENSCLAG00000013338) #20	ZNF653 (ENSCLAG00000016100) #21	ELAVL3 (ENSCLAG00000016404) #22	PRKCSH (ENSCLAG00000011549) #23	ODAD3 (ENSCLAG00000008412)	RGL3 (ENSCLAG00000008655) #25	EPOR (ENSCLAG00000007667) #26	SWSAP1 (ENSCLAG00000011027)	PLPPR2 (ENSCLAG00000008970) #27	ENSCLAG00000007718	TMEM205 (ENSCLAG00000007329) #28	RAB3D (ENSCLAG00000007049) #29	TSPAN16 (ENSCLAG00000008629)	ANGPTL8 (ENSCLAG00000007166) #30	DOCK6 (ENSCLAG00000015319) #31	LDLR (ENSCLAG00000015453) #34	SMARCA4 (ENSCLAG00000011946) #35	TIMM29 (ENSCLAG00000014951) #36
Degu	MODERN SPECIES	91	ENSODEG00000015175	ENSODEG00000020289	TNFSF14 (ENSODEG00000015436)	C3 (ENSODEG00000015506)	GPR108 (ENSODEG00000016288)	TRIP10 (ENSODEG00000015929)	VAV1 (ENSODEG00000015478)	ENSODEG00000020296	ENSODEG00000015977	ENSODEG00000020329	ACP5 (ENSODEG00000015797) #17	ENSODEG00000015688 #18	CNN1 (ENSODEG00000016009) #19	ECSIT (ENSODEG00000016279) #20	ZNF653 (ENSODEG00000015477) #21	ELAVL3 (ENSODEG00000015790) #22	PRKCSH (ENSODEG00000015657) #23	ODAD3 (ENSODEG00000015468)	RGL3 (ENSODEG00000015605) #25	EPOR (ENSODEG00000015732) #26	SWSAP1 (ENSODEG00000015882)	PLPPR2 (ENSODEG00000018491) #27	ENSODEG00000015784	TMEM205 (ENSODEG00000016141) #28	ENSODEG00000015574 #29	DOCK6 (ENSODEG00000016301) #31	ANGPTL8 (ENSODEG00000015983) #30	KANK2 (ENSODEG00000015842) #32	SPC24 (ENSODEG00000016091) #33	LDLR (ENSODEG00000015446) #34	SMARCA4 (ENSODEG00000017127) #35
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00390000012267	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a #16	ENSGT00950000182755.b.a.a.a.a.a.b.d.b	ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00510000049338	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34
Marmotini	ANCESTRAL SPECIES	41	ENSGT00390000012267	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a #16	ENSGT00950000182755.b.a.a.a.b	ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00510000049338	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34
Alpin marmot	MODERN SPECIES	24	TRIR (ENSMMMG00000020777)	TNPO2 (ENSMMMG00000020726)	FBXW9 (ENSMMMG00000020717)	ENSMMMG00000020713	DHPS (ENSMMMG00000020706)	WDR83 (ENSMMMG00000020697)	WDR83OS (ENSMMMG00000020687)	MAN2B1 (ENSMMMG00000020653) #16	ENSMMMG00000020633	ENSMMMG00000020539	ACP5 (ENSMMMG00000020512) #17	ELOF1 (ENSMMMG00000020499) #18	CNN1 (ENSMMMG00000020489) #19	ECSIT (ENSMMMG00000020481) #20	ZNF653 (ENSMMMG00000020464) #21	ELAVL3 (ENSMMMG00000020248) #22	PRKCSH (ENSMMMG00000020205) #23	ODAD3 (ENSMMMG00000020179)	RGL3 (ENSMMMG00000020154) #25	EPOR (ENSMMMG00000020144) #26	SWSAP1 (ENSMMMG00000020143)	PLPPR2 (ENSMMMG00000020126) #27	CCDC159 (ENSMMMG00000020119)	TMEM205 (ENSMMMG00000020116) #28	RAB3D (ENSMMMG00000020113) #29	TSPAN16 (ENSMMMG00000020105)	ANGPTL8 (ENSMMMG00000020098) #30	DOCK6 (ENSMMMG00000019995) #31	KANK2 (ENSMMMG00000019957) #32	SPC24 (ENSMMMG00000019947) #33	LDLR (ENSMMMG00000019891) #34
Marmotini_b	ANCESTRAL SPECIES	40	ENSGT00390000012267	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT01030000234638.b.a.a #16	ENSGT00950000182755.b.a.a.a.b	ENSGT00950000182755.b.a.a.a.a.a.a.b	ENSGT00390000016735 #17	ENSGT00390000000053 #18	ENSGT00940000159680 #19	ENSGT00390000005147 #20	ENSGT00940000160257 #21	ENSGT00940000160389 #22	ENSGT00510000047770.c.a #23	ENSGT00940000153116.C.b	ENSGT00940000161935 #25	ENSGT00940000160315 #26	ENSGT00390000007170	ENSGT00940000158145 #27	ENSGT00390000008201	ENSGT00390000016298.a #28	ENSGT00940000157552 #29	ENSGT00510000049338	ENSGT00440000034383 #30	ENSGT00940000159313 #31	ENSGT00940000161012 #32	ENSGT00390000005584 #33	ENSGT00940000161046 #34
Arctic ground squirrel	MODERN SPECIES	217	FBXW9 (ENSUPAG00010007705)	ENSUPAG00010007702	DHPS (ENSUPAG00010007686)	WDR83 (ENSUPAG00010007673)	WDR83OS (ENSUPAG00010007669)	MAN2B1 (ENSUPAG00010007651) #16	ENSUPAG00010007643	ENSUPAG00010007642	ENSUPAG00010007638	ENSUPAG00010007632	ACP5 (ENSUPAG00010007588) #17	ELOF1 (ENSUPAG00010007576) #18	CNN1 (ENSUPAG00010007563) #19	ECSIT (ENSUPAG00010007553) #20	ZNF653 (ENSUPAG00010007541) #21	ELAVL3 (ENSUPAG00010007525) #22	PRKCSH (ENSUPAG00010007493) #23	ODAD3 (ENSUPAG00010007463)	RGL3 (ENSUPAG00010007340) #25	EPOR (ENSUPAG00010007323) #26	SWSAP1 (ENSUPAG00010007321)	PLPPR2 (ENSUPAG00010007227) #27	CCDC159 (ENSUPAG00010007207)	TMEM205 (ENSUPAG00010007186) #28	RAB3D (ENSUPAG00010007164) #29	TSPAN16 (ENSUPAG00010007148)	ANGPTL8 (ENSUPAG00010007137) #30	DOCK6 (ENSUPAG00010003421) #31	KANK2 (ENSUPAG00010003372) #32	SPC24 (ENSUPAG00010003350) #33	LDLR (ENSUPAG00010003299) #34
Squirrel	MODERN SPECIES	259	TRIR (ENSSTOG00000006978)	TNPO2 (ENSSTOG00000006952)	FBXW9 (ENSSTOG00000006921)	ENSSTOG00000030269	DHPS (ENSSTOG00000006900)	WDR83 (ENSSTOG00000006883)	WDR83OS (ENSSTOG00000006874)	MAN2B1 (ENSSTOG00000029598) #16	ENSSTOG00000034910	ZNF709 (ENSSTOG00000029196)	ACP5 (ENSSTOG00000003699) #17	ELOF1 (ENSSTOG00000003687) #18	CNN1 (ENSSTOG00000003674) #19	ECSIT (ENSSTOG00000003653) #20	ZNF653 (ENSSTOG00000003640) #21	ELAVL3 (ENSSTOG00000021111) #22	PRKCSH (ENSSTOG00000003132) #23	ODAD3 (ENSSTOG00000019506)	RGL3 (ENSSTOG00000003004) #25	EPOR (ENSSTOG00000002992) #26	SWSAP1 (ENSSTOG00000002990)	PLPPR2 (ENSSTOG00000010119) #27	CCDC159 (ENSSTOG00000005786)	TMEM205 (ENSSTOG00000005779) #28	RAB3D (ENSSTOG00000027509) #29	TSPAN16 (ENSSTOG00000002961)	ANGPTL8 (ENSSTOG00000026191) #30	DOCK6 (ENSSTOG00000023652) #31	KANK2 (ENSSTOG00000008035) #32	SPC24 (ENSSTOG00000008026) #33	LDLR (ENSSTOG00000007999) #34
Eurasian red squirrel	MODERN SPECIES	7	FBXW9 (ENSSVLG00005025161)	ENSSVLG00005025134	DHPS (ENSSVLG00005025110)	ENSSVLG00005025092	ENSSVLG00005025070	ENSSVLG00005025050 #16	ENSSVLG00005025025	ENSSVLG00005025001	ENSSVLG00005024969	ACP5 (ENSSVLG00005024901) #17	ENSSVLG00005024870 #18	CNN1 (ENSSVLG00005024841) #19	ENSSVLG00005024824 #20	ENSSVLG00005024804 #20	ENSSVLG00005024790 #21	ELAVL3 (ENSSVLG00005024773) #22	PRKCSH (ENSSVLG00005024745) #23	ODAD3 (ENSSVLG00005024648)	RGL3 (ENSSVLG00005024512) #25	EPOR (ENSSVLG00005024468) #26	SWSAP1 (ENSSVLG00005024453)	PLPPR2 (ENSSVLG00005024405) #27	CCDC159 (ENSSVLG00005024349)	TMEM205 (ENSSVLG00005024312) #28	RAB3D (ENSSVLG00005024280) #29	TSPAN16 (ENSSVLG00005024177)	ANGPTL8 (ENSSVLG00005024122) #30	DOCK6 (ENSSVLG00005024084) #31	KANK2 (ENSSVLG00005024021) #32	SPC24 (ENSSVLG00005024002) #33	LDLR (ENSSVLG00005023861) #34