Amniota	ANCESTRAL SPECIES	14	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Mammalia	ANCESTRAL SPECIES	12	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00940000172404	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Theria	ANCESTRAL SPECIES	9	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00940000172404	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Eutheria	ANCESTRAL SPECIES	4	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159720 #18	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00950000185410
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00950000185410
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00990000209473	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Glires	ANCESTRAL SPECIES	3	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00990000209473	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Rodentia	ANCESTRAL SPECIES	4	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00990000209473	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Myomorpha	ANCESTRAL SPECIES		ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Muroidea	ANCESTRAL SPECIES		ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Murinae	ANCESTRAL SPECIES	6	ENSGT00730000110974	ENSGT00950000183070.a.b.h.jb #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Mus	ANCESTRAL SPECIES	2	ENSGT00950000183070.a.b.h.jb #7	ENSGT00860000136060 #9	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00940000153593.c.b.k #34	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Mus_A	ANCESTRAL SPECIES	2	ENSGT00950000183070.a.b.h.jb #7	ENSGT00860000136060 #9	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00940000153593.c.b.k #34	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00950000183070.a.b.h.jb #7	ENSGT00860000136060 #9	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00940000153593.c.b.k #34	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00950000183070.a.b.h.jb #7	ENSGT00860000136060 #9	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00940000153593.c.b.k #34	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
spretus	MODERN SPECIES	2	Phb (MGP_SPRETEiJ_G0017855) #7	Zfp652 (MGP_SPRETEiJ_G0017856) #8	MGP_SPRETEiJ_G0017857 #9	Phospho1 (MGP_SPRETEiJ_G0017858) #10	MGP_SPRETEiJ_G0017859 #11	Gngt2 (MGP_SPRETEiJ_G0017860) #12	B4galnt2 (MGP_SPRETEiJ_G0017861) #13	Igf2bp1 (MGP_SPRETEiJ_G0017862) #14	Gip (MGP_SPRETEiJ_G0017863) #15	Snf8 (MGP_SPRETEiJ_G0017864) #16	Ube2z (MGP_SPRETEiJ_G0017865) #17	Atp5g1 (MGP_SPRETEiJ_G0017866) #18	MGP_SPRETEiJ_G0017867 #19	Ttll6 (MGP_SPRETEiJ_G0017868) #20	Hoxb13 (MGP_SPRETEiJ_G0017869) #21	Hoxb9 (MGP_SPRETEiJ_G0017870) #22	Hoxb8 (MGP_SPRETEiJ_G0017871) #23	Hoxb7 (MGP_SPRETEiJ_G0017872) #24	Hoxb6 (MGP_SPRETEiJ_G0017873) #25	Hoxb5 (MGP_SPRETEiJ_G0017874) #26	Hoxb4 (MGP_SPRETEiJ_G0017875) #27	Hoxb3 (MGP_SPRETEiJ_G0017876) #28	Hoxb2 (MGP_SPRETEiJ_G0017877) #29	Hoxb1 (MGP_SPRETEiJ_G0017878) #30	MGP_SPRETEiJ_G0017879 #31	Snx11 (MGP_SPRETEiJ_G0017880) #32	Cbx1 (MGP_SPRETEiJ_G0017881) #33	MGP_SPRETEiJ_G0017882 #34	Nfe2l1 (MGP_SPRETEiJ_G0017883) #35	Copz2 (MGP_SPRETEiJ_G0017884) #36	Cdk5rap3 (MGP_SPRETEiJ_G0017885) #37
Steppe mouse	MODERN SPECIES	3291	ENSMSIG00000019388	ENSMSIG00000019385 #9	Zfp652 (ENSMSIG00000019372) #8	Phospho1 (ENSMSIG00000019336) #10	Abi3 (ENSMSIG00000019324) #11	Gngt2 (ENSMSIG00000019268) #12	B4galnt2 (ENSMSIG00000019230) #13	Igf2bp1 (ENSMSIG00000019193) #14	Gip (ENSMSIG00000019162) #15	Snf8 (ENSMSIG00000019072) #16	Ube2z (ENSMSIG00000019038) #17	Atp5g1 (ENSMSIG00000018986) #18	ENSMSIG00000018956 #19	Ttll6 (ENSMSIG00000018881) #20	Hoxb13 (ENSMSIG00000018865) #21	Hoxb9 (ENSMSIG00000018823) #22	Hoxb8 (ENSMSIG00000018807) #23	Hoxb7 (ENSMSIG00000018805) #24	Hoxb6 (ENSMSIG00000018795) #25	Hoxb5 (ENSMSIG00000018787) #26	Hoxb4 (ENSMSIG00000018777) #27	ENSMSIG00000018776	Hoxb3 (ENSMSIG00000018771) #28	Hoxb2 (ENSMSIG00000018769) #29	Hoxb1 (ENSMSIG00000018752) #30	Skap1 (ENSMSIG00000018601) #31	Snx11 (ENSMSIG00000018546) #32	ENSMSIG00000018520 #34	Cbx1 (ENSMSIG00000018447) #33	Nfe2l1 (ENSMSIG00000018374) #35	Copz2 (ENSMSIG00000018337) #36
Mouse	MODERN SPECIES	2	Ngfr (ENSMUSG00000000120)	Phb (ENSMUSG00000038845) #7	Zfp652 (ENSMUSG00000075595) #8	Phospho1 (ENSMUSG00000050860) #10	Abi3 (ENSMUSG00000018381) #11	Gngt2 (ENSMUSG00000038811) #12	B4galnt2 (ENSMUSG00000013418) #13	Igf2bp1 (ENSMUSG00000013415) #14	Gip (ENSMUSG00000014351) #15	Snf8 (ENSMUSG00000006058) #16	Ube2z (ENSMUSG00000014349) #17	Atp5g1 (ENSMUSG00000006057) #18	Calcoco2 (ENSMUSG00000006056) #19	Ttll6 (ENSMUSG00000038756) #20	Hoxb13 (ENSMUSG00000049604) #21	Hoxb9 (ENSMUSG00000020875) #22	Hoxb8 (ENSMUSG00000056648) #23	Hoxb7 (ENSMUSG00000038721) #24	Hoxb6 (ENSMUSG00000000690) #25	Hoxb5 (ENSMUSG00000038700) #26	Hoxb4 (ENSMUSG00000038692) #27	Hoxb3 (ENSMUSG00000048763) #28	Hoxb2 (ENSMUSG00000075588) #29	Hoxb1 (ENSMUSG00000018973) #30	Skap1 (ENSMUSG00000057058) #31	Snx11 (ENSMUSG00000020876) #32	Cbx1 (ENSMUSG00000018666) #33	Nfe2l1 (ENSMUSG00000038615) #35	Copz2 (ENSMUSG00000018672) #36	Cdk5rap3 (ENSMUSG00000018669) #37	Prr15l (ENSMUSG00000047040)
Ryukyu mouse	MODERN SPECIES	2	Ngfr (MGP_CAROLIEiJ_G0017009)	MGP_CAROLIEiJ_G0017010 #7	MGP_CAROLIEiJ_G0017011 #8	Phospho1 (MGP_CAROLIEiJ_G0017012) #10	Abi3 (MGP_CAROLIEiJ_G0017013) #11	Gngt2 (MGP_CAROLIEiJ_G0017014) #12	B4galnt2 (MGP_CAROLIEiJ_G0017015) #13	Igf2bp1 (MGP_CAROLIEiJ_G0017016) #14	Gip (MGP_CAROLIEiJ_G0017017) #15	Snf8 (MGP_CAROLIEiJ_G0017018) #16	MGP_CAROLIEiJ_G0017019 #17	MGP_CAROLIEiJ_G0017020 #18	MGP_CAROLIEiJ_G0017021 #19	Ttll6 (MGP_CAROLIEiJ_G0017022) #20	Hoxb13 (MGP_CAROLIEiJ_G0017023) #21	Hoxb9 (MGP_CAROLIEiJ_G0017024) #22	Hoxb8 (MGP_CAROLIEiJ_G0017025) #23	Hoxb7 (MGP_CAROLIEiJ_G0017026) #24	Hoxb6 (MGP_CAROLIEiJ_G0017027) #25	Hoxb5 (MGP_CAROLIEiJ_G0017028) #26	Hoxb4 (MGP_CAROLIEiJ_G0017029) #27	Hoxb3 (MGP_CAROLIEiJ_G0017030) #28	Hoxb2 (MGP_CAROLIEiJ_G0017031) #29	Hoxb1 (MGP_CAROLIEiJ_G0017032) #30	Skap1 (MGP_CAROLIEiJ_G0017033) #31	Snx11 (MGP_CAROLIEiJ_G0017034) #32	Cbx1 (MGP_CAROLIEiJ_G0017035) #33	MGP_CAROLIEiJ_G0017036 #34	Nfe2l1 (MGP_CAROLIEiJ_G0017037) #35	Copz2 (MGP_CAROLIEiJ_G0017038) #36	Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #37
Shrew mouse	MODERN SPECIES	5	MGP_PahariEiJ_G0018139 #7	Zfp652 (MGP_PahariEiJ_G0018140) #8	MGP_PahariEiJ_G0018141 #9	Phospho1 (MGP_PahariEiJ_G0018142) #10	Abi3 (MGP_PahariEiJ_G0018143) #11	Gngt2 (MGP_PahariEiJ_G0018144) #12	B4galnt2 (MGP_PahariEiJ_G0018145) #13	MGP_PahariEiJ_G0018146 #14	Gip (MGP_PahariEiJ_G0018147) #15	Snf8 (MGP_PahariEiJ_G0018148) #16	Ube2z (MGP_PahariEiJ_G0018149) #17	Atp5g1 (MGP_PahariEiJ_G0018150) #18	MGP_PahariEiJ_G0018151 #19	Ttll6 (MGP_PahariEiJ_G0018152) #20	Hoxb13 (MGP_PahariEiJ_G0018153) #21	Hoxb9 (MGP_PahariEiJ_G0018154) #22	Hoxb8 (MGP_PahariEiJ_G0018155) #23	Hoxb7 (MGP_PahariEiJ_G0018156) #24	Hoxb6 (MGP_PahariEiJ_G0018157) #25	Hoxb5 (MGP_PahariEiJ_G0018158) #26	Hoxb4 (MGP_PahariEiJ_G0018159) #27	Hoxb3 (MGP_PahariEiJ_G0018160) #28	Hoxb2 (MGP_PahariEiJ_G0018161) #29	Hoxb1 (MGP_PahariEiJ_G0018162) #30	Skap1 (MGP_PahariEiJ_G0018163) #31	Snx11 (MGP_PahariEiJ_G0018164) #32	Cbx1 (MGP_PahariEiJ_G0018165) #33	MGP_PahariEiJ_G0018166 #34	Nfe2l1 (MGP_PahariEiJ_G0018167) #35	Copz2 (MGP_PahariEiJ_G0018168) #36	Cdk5rap3 (MGP_PahariEiJ_G0018169) #37
Rat	MODERN SPECIES	1	Nxph3 (ENSRNOG00000005185)	Ngfr (ENSRNOG00000005392)	Phb1 (ENSRNOG00000046799) #7	Zfp652 (ENSRNOG00000017001) #8	ENSRNOG00000068958	Phospho1 (ENSRNOG00000005569) #10	Abi3 (ENSRNOG00000005575) #11	B4galnt2 (ENSRNOG00000067203) #13	Igf2bp1 (ENSRNOG00000006122) #14	Gip (ENSRNOG00000006306) #15	Snf8 (ENSRNOG00000006500) #16	Ube2z (ENSRNOG00000006868) #17	ENSRNOG00000066153 #19	Ttll6 (ENSRNOG00000004939) #20	Hoxb13 (ENSRNOG00000007491) #21	Hoxb9 (ENSRNOG00000007573) #22	Hoxb8 (ENSRNOG00000007585) #23	Hoxb7 (ENSRNOG00000007611) #24	Hoxb6 (ENSRNOG00000007823) #25	Hoxb5 (ENSRNOG00000008010) #26	Hoxb4 (ENSRNOG00000008191) #27	Hoxb3 (ENSRNOG00000008313) #28	Hoxb2 (ENSRNOG00000008365) #29	Hoxb1 (ENSRNOG00000008506) #30	Skap1 (ENSRNOG00000023881) #31	Snx11 (ENSRNOG00000008642) #32	Cbx1 (ENSRNOG00000008689) #33	Nfe2l1 (ENSRNOG00000008830) #35	Copz2 (ENSRNOG00000009225) #36	Cdk5rap3 (ENSRNOG00000048747) #37	Prr15l (ENSRNOG00000049162)
Cricetidae	ANCESTRAL SPECIES		ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.`b.a.a #18	ENSGT00940000159720.ab #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.a.a ##33	ENSGT00940000154152.d.b.dc.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Cricetinae	ANCESTRAL SPECIES		ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.`b.a.a #18	ENSGT00940000159720.`b.b #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.a.b ##33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Chinese hamster chok1gshd	MODERN SPECIES	33	Phb (ENSCGRG00001008513) #7	Zfp652 (ENSCGRG00001018513) #8	Phospho1 (ENSCGRG00001009639) #10	Abi3 (ENSCGRG00001013274) #11	Gngt2 (ENSCGRG00001021265) #12	B4galnt2 (ENSCGRG00001014272) #13	ENSCGRG00001000282 #14	Gip (ENSCGRG00001021533) #15	Snf8 (ENSCGRG00001000737) #16	Ube2z (ENSCGRG00001019150) #17	ENSCGRG00001022606 #18	ENSCGRG00001010560	ENSCGRG00001011435 #19	Ttll6 (ENSCGRG00001018398) #20	Hoxb13 (ENSCGRG00001015060) #21	Hoxb9 (ENSCGRG00001015314) #22	Hoxb8 (ENSCGRG00001020235) #23	Hoxb7 (ENSCGRG00001021590) #24	Hoxb6 (ENSCGRG00001015674) #25	Hoxb5 (ENSCGRG00001016167) #26	Hoxb4 (ENSCGRG00001022431) #27	Hoxb3 (ENSCGRG00001016667) #28	Hoxb2 (ENSCGRG00001017587) #29	Hoxb1 (ENSCGRG00001024619) #30	ENSCGRG00001023355 #31	ENSCGRG00001020759 #31	Snx11 (ENSCGRG00001022221) #32	Cbx1 (ENSCGRG00001014799) ##33	Nfe2l1 (ENSCGRG00001015287) #35	Copz2 (ENSCGRG00001014767) #36	Cdk5rap3 (ENSCGRG00001006966) #37
Golden Hamster	MODERN SPECIES	674	ENSMAUG00000008827	Nxph3 (ENSMAUG00000016785)	Ngfr (ENSMAUG00000019765)	Phb (ENSMAUG00000013028) #7	Zfp652 (ENSMAUG00000009337) #8	Phospho1 (ENSMAUG00000012074) #10	Abi3 (ENSMAUG00000021085) #11	Gngt2 (ENSMAUG00000019144) #12	B4galnt2 (ENSMAUG00000007916) #13	Gip (ENSMAUG00000009238) #15	Snf8 (ENSMAUG00000001857) #16	Ube2z (ENSMAUG00000007792) #17	ENSMAUG00000021751 #18	Ttll6 (ENSMAUG00000020973) #20	Hoxb13 (ENSMAUG00000008407) #21	Hoxb9 (ENSMAUG00000017720) #22	Hoxb8 (ENSMAUG00000012636) #23	Hoxb7 (ENSMAUG00000021297) #24	Hoxb6 (ENSMAUG00000021423) #25	Hoxb5 (ENSMAUG00000021419) #26	Hoxb4 (ENSMAUG00000009367) #27	Hoxb3 (ENSMAUG00000011251) #28	Hoxb2 (ENSMAUG00000021979) #29	Hoxb1 (ENSMAUG00000013237) #30	Skap1 (ENSMAUG00000022191) #31	Snx11 (ENSMAUG00000021528) #32	ENSMAUG00000003463 ##33	Nfe2l1 (ENSMAUG00000020456) #35	Copz2 (ENSMAUG00000010560) #36	Cdk5rap3 (ENSMAUG00000007991) #37	Pnpo (ENSMAUG00000021706)
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.`b.a.a #18	ENSGT00940000159720.ab #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Prairie vole	MODERN SPECIES	114									ENSMOCG00000004266	ENSMOCG00000021226 #15	Snf8 (ENSMOCG00000016684) #16	Ube2z (ENSMOCG00000018241) #17	ENSMOCG00000013163 #18	Ttll6 (ENSMOCG00000021089) #20	Hoxb13 (ENSMOCG00000021389) #21	Hoxb9 (ENSMOCG00000020312) #22	Hoxb8 (ENSMOCG00000018435) #23	Hoxb7 (ENSMOCG00000020820) #24	Hoxb6 (ENSMOCG00000020355) #25	Hoxb5 (ENSMOCG00000014523) #26	Hoxb4 (ENSMOCG00000022964) #27	Hoxb3 (ENSMOCG00000020739) #28	Hoxb2 (ENSMOCG00000014846) #29	Hoxb1 (ENSMOCG00000002452) #30	Skap1 (ENSMOCG00000018431) #31	Snx11 (ENSMOCG00000019303) #32	Cbx1 (ENSMOCG00000001520) #33	Nfe2l1 (ENSMOCG00000016002) #35	Copz2 (ENSMOCG00000022427) #36	Cdk5rap3 (ENSMOCG00000019534) #37	Prr15l (ENSMOCG00000006695)
Northern American deer mouse	MODERN SPECIES	21	Phb (ENSPEMG00000021310) #7	Zfp652 (ENSPEMG00000020862) #8	Phospho1 (ENSPEMG00000026539) #10	Abi3 (ENSPEMG00000014242) #11	Gngt2 (ENSPEMG00000027491) #12	B4galnt2 (ENSPEMG00000020717) #13	Igf2bp1 (ENSPEMG00000021974) #14	Gip (ENSPEMG00000021184) #15	Snf8 (ENSPEMG00000022229) #16	Ube2z (ENSPEMG00000020953) #17	Atp5g1 (ENSPEMG00000020590) #18	ENSPEMG00000028729 #19	ENSPEMG00000025676 #19	Ttll6 (ENSPEMG00000021918) #20	Hoxb13 (ENSPEMG00000021511) #21	Hoxb9 (ENSPEMG00000027158) #22	Hoxb5 (ENSPEMG00000030101) #26	Hoxb4 (ENSPEMG00000029805) #27	Hoxb3 (ENSPEMG00000028692) #28	Hoxb2 (ENSPEMG00000029510) #29	Hoxb1 (ENSPEMG00000023977) #30	Skap1 (ENSPEMG00000000585) #31	ENSPEMG00000020286	Snx11 (ENSPEMG00000000381) #32	Cbx1 (ENSPEMG00000020976) ##33	Nfe2l1 (ENSPEMG00000010512) #35	Copz2 (ENSPEMG00000011137) #36	Cdk5rap3 (ENSPEMG00000020712) #37	ENSPEMG00000030963	Prr15l (ENSPEMG00000024436)	Pnpo (ENSPEMG00000025094)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Ngfr (ENSNGAG00000016145)	Phb (ENSNGAG00000012333) #7	Zfp652 (ENSNGAG00000010366) #8	Phospho1 (ENSNGAG00000008704) #10	Abi3 (ENSNGAG00000003386) #11	Gngt2 (ENSNGAG00000001081) #12	B4galnt2 (ENSNGAG00000016426) #13	Igf2bp1 (ENSNGAG00000015679) #14	Gip (ENSNGAG00000020354) #15	Snf8 (ENSNGAG00000001366) #16	Ube2z (ENSNGAG00000024296) #17	ENSNGAG00000024212 #18	ENSNGAG00000023585 #19	Ttll6 (ENSNGAG00000011763) #20	Hoxb13 (ENSNGAG00000011053) #21	Hoxb9 (ENSNGAG00000010851) #22	Hoxb8 (ENSNGAG00000010647) #23	Hoxb7 (ENSNGAG00000010205) #24	Hoxb6 (ENSNGAG00000000973) #25	Hoxb5 (ENSNGAG00000023238) #26	Hoxb4 (ENSNGAG00000021768) #27	Hoxb3 (ENSNGAG00000020227) #28	Hoxb2 (ENSNGAG00000019089) #29	Hoxb1 (ENSNGAG00000018593) #30	Skap1 (ENSNGAG00000012571) #31	Snx11 (ENSNGAG00000010446) #32	Cbx1 (ENSNGAG00000006760) #33	Nfe2l1 (ENSNGAG00000000736) #35	Copz2 (ENSNGAG00000023713) #36	ENSNGAG00000000747 #37	ENSNGAG00000022529
Lesser Egyptian jerboa	MODERN SPECIES	56	ENSJJAG00000009251 #7	ENSJJAG00000006327	Zfp652 (ENSJJAG00000010496) #8	Phospho1 (ENSJJAG00000010499) #10	Abi3 (ENSJJAG00000002821) #11	Gngt2 (ENSJJAG00000002044) #12	ENSJJAG00000002566	B4galnt2 (ENSJJAG00000006322) #13	Igf2bp1 (ENSJJAG00000002687) #14	Gip (ENSJJAG00000010688) #15	Snf8 (ENSJJAG00000006012) #16	ENSJJAG00000003530 #17	ENSJJAG00000010301 #18	Ttll6 (ENSJJAG00000010253) #20	Hoxb13 (ENSJJAG00000010401) #21	Hoxb9 (ENSJJAG00000009821) #22	Hoxb8 (ENSJJAG00000002398) #23	Hoxb7 (ENSJJAG00000001284) #24	Hoxb6 (ENSJJAG00000000997) #25	Hoxb5 (ENSJJAG00000000763) #26	Hoxb4 (ENSJJAG00000002642) #27	Hoxb3 (ENSJJAG00000007804) #28	Hoxb2 (ENSJJAG00000009465) #29	Hoxb1 (ENSJJAG00000001073) #30	Skap1 (ENSJJAG00000003458) #31	ENSJJAG00000005754 #32	ENSJJAG00000007753 ##33	Nfe2l1 (ENSJJAG00000006432) #35	Copz2 (ENSJJAG00000001025) #36	ENSJJAG00000002511 #37	Prr15l (ENSJJAG00000006478)
Kangaroo rat	MODERN SPECIES	326	Spop (ENSDORG00000001680)	Nxph3 (ENSDORG00000001674)	Ngfr (ENSDORG00000004457)	ENSDORG00000004455 #7	Zfp652 (ENSDORG00000028287) #8	Phospho1 (ENSDORG00000002249) #10	Abi3 (ENSDORG00000002245) #11	Gngt2 (ENSDORG00000023588) #12	Igf2bp1 (ENSDORG00000014371) #14	Snf8 (ENSDORG00000009262) #16	Ube2z (ENSDORG00000009258) #17	ENSDORG00000008511	ENSDORG00000028385	ENSDORG00000024585 #19	Hoxb13 (ENSDORG00000008369) #21	Hoxb9 (ENSDORG00000027423) #22	Hoxb8 (ENSDORG00000007906) #23	Hoxb7 (ENSDORG00000007905) #24	Hoxb6 (ENSDORG00000023877) #25	Hoxb5 (ENSDORG00000007900) #26	Hoxb4 (ENSDORG00000007899) #27	Hoxb3 (ENSDORG00000007898) #28	Hoxb2 (ENSDORG00000007897) #29	Hoxb1 (ENSDORG00000007896) #30	Snx11 (ENSDORG00000029078) #32	Cbx1 (ENSDORG00000026399) #33	Nfe2l1 (ENSDORG00000000715) #35	Copz2 (ENSDORG00000013441) #36	Prr15l (ENSDORG00000027427)	Pnpo (ENSDORG00000014110)	Sp2 (ENSDORG00000014109)
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00990000209473	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00990000209473	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Marmotini	ANCESTRAL SPECIES	8	ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Squirrel	MODERN SPECIES	90	ENSSTOG00000019929 #7	ZNF652 (ENSSTOG00000011303) #8	PHOSPHO1 (ENSSTOG00000007651) #10	ABI3 (ENSSTOG00000020017) #11	GNGT2 (ENSSTOG00000007644) #12	B4GALNT2 (ENSSTOG00000007604) #13	IGF2BP1 (ENSSTOG00000010643) #14	GIP (ENSSTOG00000004043) #15	SNF8 (ENSSTOG00000004023) #16	UBE2Z (ENSSTOG00000000796) #17	ATP5MC1 (ENSSTOG00000013404)	ENSSTOG00000013395 #19	TTLL6 (ENSSTOG00000006016) #20	ENSSTOG00000025444	HOXB13 (ENSSTOG00000014942) #21	HOXB9 (ENSSTOG00000009741) #22	HOXB8 (ENSSTOG00000028337) #23	HOXB7 (ENSSTOG00000025657) #24	HOXB6 (ENSSTOG00000020303) #25	HOXB5 (ENSSTOG00000009740) #26	HOXB4 (ENSSTOG00000009734) #27	HOXB3 (ENSSTOG00000025093) #28	HOXB2 (ENSSTOG00000023586) #29	HOXB1 (ENSSTOG00000028630) #30	SKAP1 (ENSSTOG00000013692) #31	SNX11 (ENSSTOG00000013684) #32	CBX1 (ENSSTOG00000023986) #33	NFE2L1 (ENSSTOG00000013664) #35	ENSSTOG00000027550 #36	CDK5RAP3 (ENSSTOG00000006244) #37	PRR15L (ENSSTOG00000006235)
Arctic ground squirrel	MODERN SPECIES	46	NGFR (ENSUPAG00010006025)	PHB1 (ENSUPAG00010006031) #7	ZNF652 (ENSUPAG00010006043) #8	PHOSPHO1 (ENSUPAG00010006065) #10	ABI3 (ENSUPAG00010006071) #11	GNGT2 (ENSUPAG00010006078) #12	B4GALNT2 (ENSUPAG00010006086) #13	IGF2BP1 (ENSUPAG00010006100) #14	GIP (ENSUPAG00010006136) #15	SNF8 (ENSUPAG00010006148) #16	UBE2Z (ENSUPAG00010006178) #17	ENSUPAG00010006195 #18	CALCOCO2 (ENSUPAG00010006243) #19	TTLL6 (ENSUPAG00010006267) #20	HOXB13 (ENSUPAG00010006301) #21	HOXB9 (ENSUPAG00010006305) #22	HOXB8 (ENSUPAG00010006310) #23	HOXB7 (ENSUPAG00010006312) #24	HOXB6 (ENSUPAG00010006317) #25	HOXB5 (ENSUPAG00010006320) #26	HOXB4 (ENSUPAG00010006325) #27	HOXB3 (ENSUPAG00010006328) #28	HOXB2 (ENSUPAG00010006336) #29	HOXB1 (ENSUPAG00010006340) #30	SKAP1 (ENSUPAG00010006345) #31	SNX11 (ENSUPAG00010006370) #32	CBX1 (ENSUPAG00010006381) #33	NFE2L1 (ENSUPAG00010006396) #35	COPZ2 (ENSUPAG00010006455) #36	CDK5RAP3 (ENSUPAG00010006466) #37	PRR15L (ENSUPAG00010006473)
Eurasian red squirrel	MODERN SPECIES	12	PHB1 (ENSSVLG00005021310) #7	ZNF652 (ENSSVLG00005021244) #8	ENSSVLG00005021191 #10	ABI3 (ENSSVLG00005021097) #11	GNGT2 (ENSSVLG00005021063) #12	B4GALNT2 (ENSSVLG00005020850) #13	IGF2BP1 (ENSSVLG00005020596) #14	GIP (ENSSVLG00005020522) #15	SNF8 (ENSSVLG00005020472) #16	ENSSVLG00005020450	UBE2Z (ENSSVLG00005020428) #17	ATP5MC1 (ENSSVLG00005020344)	CALCOCO2 (ENSSVLG00005020296) #19	TTLL6 (ENSSVLG00005020005) #20	HOXB13 (ENSSVLG00005019820) #21	HOXB9 (ENSSVLG00005019725) #22	HOXB8 (ENSSVLG00005019675) #23	HOXB7 (ENSSVLG00005019618) #24	HOXB6 (ENSSVLG00005019586) #25	HOXB5 (ENSSVLG00005019546) #26	HOXB4 (ENSSVLG00005019455) #27	HOXB3 (ENSSVLG00005019421) #28	HOXB2 (ENSSVLG00005019378) #29	HOXB1 (ENSSVLG00005019304) #30	SKAP1 (ENSSVLG00005019232) #31	SNX11 (ENSSVLG00005019122) #32	CBX1 (ENSSVLG00005019034) #33	NFE2L1 (ENSSVLG00005018798) #35	COPZ2 (ENSSVLG00005018641) #36	CDK5RAP3 (ENSSVLG00005018459) #37	PRR15L (ENSSVLG00005018399)
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000011644 #7	ZNF652 (ENSHGLG00000010452) #8	PHOSPHO1 (ENSHGLG00000011269) #10	ABI3 (ENSHGLG00000012283) #11	GNGT2 (ENSHGLG00000048834) #12	B4GALNT2 (ENSHGLG00000011792) #13	IGF2BP1 (ENSHGLG00000010492) #14	ENSHGLG00000010703 #15	SNF8 (ENSHGLG00000011519) #16	UBE2Z (ENSHGLG00000016280) #17	ATP5MC1 (ENSHGLG00000035460)	CALCOCO2 (ENSHGLG00000012114) #19	TTLL6 (ENSHGLG00000019187) #20	HOXB13 (ENSHGLG00000014634) #21	ENSHGLG00000048296	HOXB9 (ENSHGLG00000014731) #22	HOXB8 (ENSHGLG00000038380) #23	HOXB7 (ENSHGLG00000045318) #24	HOXB6 (ENSHGLG00000012400) #25	HOXB5 (ENSHGLG00000039265) #26	HOXB4 (ENSHGLG00000034075) #27	HOXB3 (ENSHGLG00000010686) #28	HOXB2 (ENSHGLG00000010090) #29	HOXB1 (ENSHGLG00000009781) #30	SKAP1 (ENSHGLG00000014563) #31	SNX11 (ENSHGLG00000016837) #32	CBX1 (ENSHGLG00000013574) #33	NFE2L1 (ENSHGLG00000012592) #35	COPZ2 (ENSHGLG00000018543) #36	CDK5RAP3 (ENSHGLG00000019464) #37	PRR15L (ENSHGLG00000014696)
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Guinea pig	MODERN SPECIES	53	NGFR (ENSCPOG00000001114)	PHB1 (ENSCPOG00000000430) #7	ZNF652 (ENSCPOG00000039975) #8	PHOSPHO1 (ENSCPOG00000024347) #10	ENSCPOG00000020987 #11	GNGT2 (ENSCPOG00000030054) #12	B4GALNT2 (ENSCPOG00000006191) #13	IGF2BP1 (ENSCPOG00000020174) #14	GIP (ENSCPOG00000023966) #15	SNF8 (ENSCPOG00000020610) #16	UBE2Z (ENSCPOG00000024416) #17	ENSCPOG00000009017	CALCOCO2 (ENSCPOG00000021273) #19	TTLL6 (ENSCPOG00000012509) #20	HOXB13 (ENSCPOG00000013509) #21	HOXB9 (ENSCPOG00000037597) #22	HOXB6 (ENSCPOG00000040707) #25	HOXB5 (ENSCPOG00000030746) #26	ENSCPOG00000010105	ENSCPOG00000010107 #28	HOXB2 (ENSCPOG00000035468) #29	HOXB1 (ENSCPOG00000022183) #30	SKAP1 (ENSCPOG00000022118) #31	SNX11 (ENSCPOG00000020234) #32	CBX1 (ENSCPOG00000034435) #33	NFE2L1 (ENSCPOG00000030805) #35	COPZ2 (ENSCPOG00000019500) #36	CDK5RAP3 (ENSCPOG00000007275) #37	PRR15L (ENSCPOG00000035567)	PNPO (ENSCPOG00000003187)	SP2 (ENSCPOG00000014943)
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Degu	MODERN SPECIES	97	ENSODEG00000017118 #7	ENSODEG00000020479	ZNF652 (ENSODEG00000017173) #8	PHOSPHO1 (ENSODEG00000017221) #10	ABI3 (ENSODEG00000017358) #11	GNGT2 (ENSODEG00000017526) #12	B4GALNT2 (ENSODEG00000018456) #13	ENSODEG00000016991 #14	ENSODEG00000017109	GIP (ENSODEG00000017003) #15	ENSODEG00000017032 #16	UBE2Z (ENSODEG00000017306) #17	ATP5MC1 (ENSODEG00000017366)	TTLL6 (ENSODEG00000017145) #20	HOXB13 (ENSODEG00000017199) #21	HOXB9 (ENSODEG00000017293) #22	HOXB8 (ENSODEG00000017119) #23	HOXB6 (ENSODEG00000016988) #25	HOXB5 (ENSODEG00000017253) #26	HOXB4 (ENSODEG00000017038) #27	HOXB3 (ENSODEG00000017116) #28	HOXB2 (ENSODEG00000017153) #29	HOXB1 (ENSODEG00000017050) #30	SKAP1 (ENSODEG00000017533) #31	SNX11 (ENSODEG00000017458) #32	CBX1 (ENSODEG00000017272) #33	NFE2L1 (ENSODEG00000017348) #35	ENSODEG00000020421	COPZ2 (ENSODEG00000017565) #36	ENSODEG00000017229 #37	PNPO (ENSODEG00000017424)
Long-tailed chinchilla	MODERN SPECIES	158	NGFR (ENSCLAG00000015829)	PHB1 (ENSCLAG00000013248) #7	ZNF652 (ENSCLAG00000013368) #8	PHOSPHO1 (ENSCLAG00000015042) #10	ABI3 (ENSCLAG00000015475) #11	GNGT2 (ENSCLAG00000014970) #12	B4GALNT2 (ENSCLAG00000016224) #13	IGF2BP1 (ENSCLAG00000015853) #14	ENSCLAG00000014301 #15	SNF8 (ENSCLAG00000013387) #16	UBE2Z (ENSCLAG00000016068) #17	ATP5MC1 (ENSCLAG00000015723)	CALCOCO2 (ENSCLAG00000015881) #19	TTLL6 (ENSCLAG00000013529) #20	HOXB13 (ENSCLAG00000014855) #21	ENSCLAG00000015198 #22	HOXB7 (ENSCLAG00000014906) #24	HOXB6 (ENSCLAG00000015524) #25	HOXB5 (ENSCLAG00000014374) #26	HOXB4 (ENSCLAG00000014725) #27	HOXB3 (ENSCLAG00000015322) #28	HOXB2 (ENSCLAG00000015271) #29	HOXB1 (ENSCLAG00000013047) #30	SKAP1 (ENSCLAG00000015423) #31	SNX11 (ENSCLAG00000015837) #32	CBX1 (ENSCLAG00000013587) #33	NFE2L1 (ENSCLAG00000014836) #35	COPZ2 (ENSCLAG00000013544) #36	CDK5RAP3 (ENSCLAG00000012292) #37	PRR15L (ENSCLAG00000017903)	PNPO (ENSCLAG00000013871)
Lagomorpha	ANCESTRAL SPECIES		ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a	ENSGT00390000011219	ENSGT00940000159590
Rabbit	MODERN SPECIES	10	ENSOCUG00000007209 #7	ZNF652 (ENSOCUG00000002965) #8	PHOSPHO1 (ENSOCUG00000016347) #10	ABI3 (ENSOCUG00000016339) #11	GNGT2 (ENSOCUG00000016331) #12	B4GALNT2 (ENSOCUG00000003531) #13	IGF2BP1 (ENSOCUG00000004411) #14	GIP (ENSOCUG00000004410) #15	SNF8 (ENSOCUG00000009156) #16	UBE2Z (ENSOCUG00000009159) #17	ATP5MC1 (ENSOCUG00000016225)	CALCOCO2 (ENSOCUG00000016209) #19	ENSOCUG00000038154	TTLL6 (ENSOCUG00000006289) #20	HOXB13 (ENSOCUG00000012816) #21	HOXB9 (ENSOCUG00000027316) #22	HOXB8 (ENSOCUG00000029186) #23	HOXB5 (ENSOCUG00000023093) #26	HOXB6 (ENSOCUG00000011560) #25	HOXB3 (ENSOCUG00000023337) #28	HOXB2 (ENSOCUG00000024951) #29	HOXB1 (ENSOCUG00000001720) #30	SKAP1 (ENSOCUG00000001717) #31	SNX11 (ENSOCUG00000002309) #32	CBX1 (ENSOCUG00000008021) #33	NFE2L1 (ENSOCUG00000022298) #35	COPZ2 (ENSOCUG00000001802) #36	CDK5RAP3 (ENSOCUG00000012325) #37	PRR15L (ENSOCUG00000017489)	PNPO (ENSOCUG00000017484)	SP2 (ENSOCUG00000027415)
Primates	ANCESTRAL SPECIES	3	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00950000185410
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00950000185410	ENSGT00390000000713 #37
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00950000185410	ENSGT00390000000713 #37
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00950000185410	ENSGT00390000000713 #37
Greater bamboo lemur	MODERN SPECIES	168								IGF2BP1 (ENSPSMG00000020445) #14	GIP (ENSPSMG00000020432) #15	SNF8 (ENSPSMG00000020426) #16	UBE2Z (ENSPSMG00000020387) #17	ENSPSMG00000020369 #18	CALCOCO2 (ENSPSMG00000020308) #19	ENSPSMG00000020243 #20	HOXB13 (ENSPSMG00000020237) #21	HOXB9 (ENSPSMG00000020232) #22	HOXB8 (ENSPSMG00000020227) #23	HOXB7 (ENSPSMG00000020218) #24	HOXB6 (ENSPSMG00000020209) #25	HOXB5 (ENSPSMG00000020200) #26	HOXB4 (ENSPSMG00000020187) #27	HOXB3 (ENSPSMG00000020182) #28	HOXB2 (ENSPSMG00000020176) #29	HOXB1 (ENSPSMG00000020167) #30	SKAP1 (ENSPSMG00000020161) #31	SNX11 (ENSPSMG00000020139) #32	CBX1 (ENSPSMG00000020119) #33
Coquerels sifaka	MODERN SPECIES	120	ENSPCOG00000004228 #7	ZNF652 (ENSPCOG00000026434) #8	PHOSPHO1 (ENSPCOG00000025336) #10	ABI3 (ENSPCOG00000022568) #11	GNGT2 (ENSPCOG00000012867) #12	B4GALNT2 (ENSPCOG00000013984) #13	ENSPCOG00000018672	IGF2BP1 (ENSPCOG00000006475) #14	GIP (ENSPCOG00000024832) #15	SNF8 (ENSPCOG00000026895) #16	UBE2Z (ENSPCOG00000014816) #17	ENSPCOG00000008741 #18	CALCOCO2 (ENSPCOG00000021998) #19	TTLL6 (ENSPCOG00000021391) #20	HOXB13 (ENSPCOG00000018182) #21	HOXB9 (ENSPCOG00000027130) #22	HOXB8 (ENSPCOG00000024853) #23	HOXB7 (ENSPCOG00000028248) #24	HOXB6 (ENSPCOG00000019931) #25	HOXB5 (ENSPCOG00000015692) #26	HOXB4 (ENSPCOG00000022963) #27	HOXB3 (ENSPCOG00000020113) #28	HOXB2 (ENSPCOG00000017380) #29	HOXB1 (ENSPCOG00000025930) #30	SKAP1 (ENSPCOG00000022221) #31	SNX11 (ENSPCOG00000011015) #32	ENSPCOG00000010902 #33	NFE2L1 (ENSPCOG00000021740) #35	COPZ2 (ENSPCOG00000018359) #36	CDK5RAP3 (ENSPCOG00000016598) #37	PNPO (ENSPCOG00000017906)
Mouse lemur	MODERN SPECIES	7	ENSMICG00000043778 #7	ZNF652 (ENSMICG00000006959) #8	PHOSPHO1 (ENSMICG00000032861) #10	ABI3 (ENSMICG00000008618) #11	GNGT2 (ENSMICG00000045728) #12	B4GALNT2 (ENSMICG00000008596) #13	ENSMICG00000037104	ENSMICG00000013324 #14	GIP (ENSMICG00000013317) #15	SNF8 (ENSMICG00000013305) #16	UBE2Z (ENSMICG00000046102) #17	ENSMICG00000003414 #18	CALCOCO2 (ENSMICG00000015330) #19	TTLL6 (ENSMICG00000007549) #20	HOXB13 (ENSMICG00000007546) #21	HOXB9 (ENSMICG00000038413) #22	HOXB8 (ENSMICG00000045961) #23	HOXB7 (ENSMICG00000007539) #24	HOXB6 (ENSMICG00000042216) #25	HOXB5 (ENSMICG00000047139) #26	HOXB4 (ENSMICG00000043173) #27	HOXB3 (ENSMICG00000007522) #28	HOXB2 (ENSMICG00000038222) #29	HOXB1 (ENSMICG00000048152) #30	SKAP1 (ENSMICG00000047158) #31	ENSMICG00000029923	SNX11 (ENSMICG00000014741) #32	NFE2L1 (ENSMICG00000014716) #35	ENSMICG00000009510 #33	COPZ2 (ENSMICG00000014097) #36	CDK5RAP3 (ENSMICG00000014077) #37
Bushbaby	MODERN SPECIES	133	NGFR (ENSOGAG00000015270)	ENSOGAG00000027015 #7	ZNF652 (ENSOGAG00000003574) #8	PHOSPHO1 (ENSOGAG00000034530) #10	ABI3 (ENSOGAG00000029723) #11	B4GALNT2 (ENSOGAG00000003570) #13	IGF2BP1 (ENSOGAG00000001270) #14	GIP (ENSOGAG00000010130) #15	ENSOGAG00000001269 #16	UBE2Z (ENSOGAG00000001267) #17	ATP5MC1 (ENSOGAG00000011713)	CALCOCO2 (ENSOGAG00000011709) #19	TTLL6 (ENSOGAG00000011701) #20	HOXB13 (ENSOGAG00000032643) #21	ENSOGAG00000034464	HOXB9 (ENSOGAG00000008668) #22	HOXB8 (ENSOGAG00000029480) #23	HOXB7 (ENSOGAG00000008667) #24	HOXB6 (ENSOGAG00000008661) #25	HOXB5 (ENSOGAG00000032432) #26	HOXB4 (ENSOGAG00000033709) #27	HOXB3 (ENSOGAG00000032090) #28	HOXB2 (ENSOGAG00000029280) #29	HOXB1 (ENSOGAG00000031645) #30	SKAP1 (ENSOGAG00000015855) #31	SNX11 (ENSOGAG00000015854) #32	CBX1 (ENSOGAG00000005658) #33	NFE2L1 (ENSOGAG00000025191) #35	COPZ2 (ENSOGAG00000004954) #36	CDK5RAP3 (ENSOGAG00000004951) #37	PRR15L (ENSOGAG00000006187)
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Tarsier	MODERN SPECIES	5167									SNF8 (ENSTSYG00000004576) #16	UBE2Z (ENSTSYG00000036628) #17	ATP5G1 (ENSTSYG00000028465)	CALCOCO2 (ENSTSYG00000013102) #19	TTLL6 (ENSTSYG00000013796) #20	HOXB13 (ENSTSYG00000037206) #21	ENSTSYG00000033639	HOXB9 (ENSTSYG00000027064) #22
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT01100000264599	ENSGT00390000007843.v #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00860000135909	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00940000157416 #8	ENSGT00390000007741.a.m #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Cebidae	ANCESTRAL SPECIES	10	ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #8	ENSGT00390000007741.a.m #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00940000154172.gb.b.b.b	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Marmoset	MODERN SPECIES	17	PHB1 (ENSCJAG00000007174) #7	ZNF652 (ENSCJAG00000007206) #8	PHOSPHO1 (ENSCJAG00000047817) #10	ABI3 (ENSCJAG00000007219) #11	GNGT2 (ENSCJAG00000041153) #12	B4GALNT2 (ENSCJAG00000007247) #13	ENSCJAG00000079002	IGF2BP1 (ENSCJAG00000007258) #14	GIP (ENSCJAG00000007300) #15	SNF8 (ENSCJAG00000007322) #16	UBE2Z (ENSCJAG00000007326) #17	ATP5MC1 (ENSCJAG00000075375)	CALCOCO2 (ENSCJAG00000007375) #19	TTLL6 (ENSCJAG00000007395) #20	HOXB13 (ENSCJAG00000007437) #21	HOXB9 (ENSCJAG00000007442) #22	HOXB8 (ENSCJAG00000045730) #23	HOXB7 (ENSCJAG00000007457) #24	HOXB6 (ENSCJAG00000007467) #25	HOXB5 (ENSCJAG00000007472) #26	HOXB4 (ENSCJAG00000007480) #27	HOXB3 (ENSCJAG00000007487) #28	HOXB2 (ENSCJAG00000007494) #29	HOXB1 (ENSCJAG00000007496) #30	ENSCJAG00000038853	SKAP1 (ENSCJAG00000007504) #31	SNX11 (ENSCJAG00000039549) #32	CBX1 (ENSCJAG00000042052) #33	NFE2L1 (ENSCJAG00000007542) #35	ENSCJAG00000058197	COPZ2 (ENSCJAG00000007567) #36
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00390000007741.a.m #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a.t.b #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00860000135909	ENSGT01050000247531	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00940000154172.gb.b.b.b	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Capuchin	MODERN SPECIES	228												HOXB13 (ENSCCAG00000036871) #21	ENSCCAG00000036164	ENSCCAG00000019672	HOXB7 (ENSCCAG00000023947) #24	HOXB9 (ENSCCAG00000035938) #22	HOXB8 (ENSCCAG00000026051) #23	HOXB6 (ENSCCAG00000022842) #25	HOXB5 (ENSCCAG00000036867) #26	HOXB4 (ENSCCAG00000020311) #27	HOXB3 (ENSCCAG00000013598) #28	HOXB2 (ENSCCAG00000024035) #29	HOXB1 (ENSCCAG00000027667) #30	ENSCCAG00000019181	SKAP1 (ENSCCAG00000035663) #31	SNX11 (ENSCCAG00000030167) #32	CBX1 (ENSCCAG00000025085) #33	NFE2L1 (ENSCCAG00000029090) #35	COPZ2 (ENSCCAG00000021292) #36	CDK5RAP3 (ENSCCAG00000038053) #37	PNPO (ENSCCAG00000029175)
Bolivian squirrel monkey	MODERN SPECIES	86	PHOSPHO1 (ENSSBOG00000031500) #10	ABI3 (ENSSBOG00000013949) #11	GNGT2 (ENSSBOG00000030712) #12	B4GALNT2 (ENSSBOG00000026556) #13	IGF2BP1 (ENSSBOG00000020973) #14	GIP (ENSSBOG00000020793) #15	SNF8 (ENSSBOG00000026186) #16	ENSSBOG00000028176	UBE2Z (ENSSBOG00000036224) #17	ENSSBOG00000028794 #18	CALCOCO2 (ENSSBOG00000035276) #19	TTLL6 (ENSSBOG00000028908) #20	HOXB13 (ENSSBOG00000029964) #21	PRAC2 (ENSSBOG00000032603)	ENSSBOG00000030794	HOXB9 (ENSSBOG00000030218) #22	HOXB8 (ENSSBOG00000034884) #23	HOXB7 (ENSSBOG00000020028) #24	HOXB6 (ENSSBOG00000031900) #25	HOXB5 (ENSSBOG00000018198) #26	HOXB4 (ENSSBOG00000024432) #27	HOXB3 (ENSSBOG00000030844) #28	HOXB2 (ENSSBOG00000025070) #29	HOXB1 (ENSSBOG00000034875) #30	ENSSBOG00000019520	SKAP1 (ENSSBOG00000029434) #31	SNX11 (ENSSBOG00000026967) #32	ENSSBOG00000031880 ##33	NFE2L1 (ENSSBOG00000023867) #35	COPZ2 (ENSSBOG00000033633) #36	CDK5RAP3 (ENSSBOG00000033272) #37
Mas night monkey	MODERN SPECIES	481	ZNF652 (ENSANAG00000031074) #8	ENSANAG00000032587 #10	ABI3 (ENSANAG00000029869) #11	GNGT2 (ENSANAG00000020682) #12	B4GALNT2 (ENSANAG00000023170) #13	IGF2BP1 (ENSANAG00000022606) #14	GIP (ENSANAG00000030188) #15	SNF8 (ENSANAG00000032764) #16	UBE2Z (ENSANAG00000029636) #17	ATP5MC1 (ENSANAG00000024881)	ENSANAG00000020581 #19	TTLL6 (ENSANAG00000031133) #20	PRAC2 (ENSANAG00000025557)	HOXB13 (ENSANAG00000023991) #21	ENSANAG00000030331	HOXB9 (ENSANAG00000035156) #22	HOXB8 (ENSANAG00000028346) #23	HOXB7 (ENSANAG00000025513) #24	HOXB6 (ENSANAG00000023964) #25	HOXB5 (ENSANAG00000024299) #26	HOXB4 (ENSANAG00000024005) #27	HOXB3 (ENSANAG00000032072) #28	HOXB2 (ENSANAG00000023626) #29	HOXB1 (ENSANAG00000032306) #30	ENSANAG00000023400	SKAP1 (ENSANAG00000026853) #31	SNX11 (ENSANAG00000022588) #32	ENSANAG00000036853 ##33	NFE2L1 (ENSANAG00000027606) #35	COPZ2 (ENSANAG00000023309) #36	CDK5RAP3 (ENSANAG00000021880) #37
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT01100000264599	ENSGT00390000007843.v #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00940000157416 #8	ENSGT00390000007741.a.k #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00940000157416 #8	ENSGT00390000007741.a.k #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Vervet Monkey	MODERN SPECIES	7	NGFR (ENSCSAG00000002443)	ENSCSAG00000002455 #7	ZNF652 (ENSCSAG00000002462) #8	PHOSPHO1 (ENSCSAG00000002465) #10	ABI3 (ENSCSAG00000002473) #11	GNGT2 (ENSCSAG00000002475) #12	B4GALNT2 (ENSCSAG00000002479) #13	IGF2BP1 (ENSCSAG00000002487) #14	GIP (ENSCSAG00000002491) #15	SNF8 (ENSCSAG00000002494) #16	UBE2Z (ENSCSAG00000002496) #17	ATP5MC1 (ENSCSAG00000002502)	CALCOCO2 (ENSCSAG00000002506) #19	TTLL6 (ENSCSAG00000002511) #20	HOXB13 (ENSCSAG00000002517) #21	HOXB9 (ENSCSAG00000002521) #22	HOXB8 (ENSCSAG00000002523) #23	HOXB7 (ENSCSAG00000002524) #24	HOXB6 (ENSCSAG00000002526) #25	HOXB5 (ENSCSAG00000002529) #26	HOXB4 (ENSCSAG00000002530) #27	HOXB3 (ENSCSAG00000002533) #28	HOXB2 (ENSCSAG00000002536) #29	HOXB1 (ENSCSAG00000002538) #30	ENSCSAG00000019043	SKAP1 (ENSCSAG00000002542) #31	SNX11 (ENSCSAG00000002545) #32	CBX1 (ENSCSAG00000002547) #33	NFE2L1 (ENSCSAG00000002550) #35	COPZ2 (ENSCSAG00000002558) #36	CDK5RAP3 (ENSCSAG00000002562) #37
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00390000007741.a.k #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Macaca	ANCESTRAL SPECIES	4	ENSGT00390000007741.a.k #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b.e	ENSGT00950000183025.a #19	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00940000157416 #8	ENSGT00390000007741.a.k #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b.e	ENSGT00950000183025.a #19	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000165611	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Crab-eating macaque	MODERN SPECIES	7	B4GALNT2 (ENSMFAG00000003631) #13	IGF2BP1 (ENSMFAG00000001613) #14	ENSMFAG00000059536	GIP (ENSMFAG00000045846) #15	SNF8 (ENSMFAG00000000584) #16	UBE2Z (ENSMFAG00000045564) #17	ENSMFAG00000037178	ENSMFAG00000055147	CALCOCO2 (ENSMFAG00000000840) #19	ENSMFAG00000030534	ENSMFAG00000059251	TTLL6 (ENSMFAG00000035518) #20	HOXB13 (ENSMFAG00000039799) #21	PRAC1 (ENSMFAG00000039547)	ENSMFAG00000047612	HOXB9 (ENSMFAG00000062545) #22	HOXB8 (ENSMFAG00000033418) #23	HOXB7 (ENSMFAG00000039298) #24	HOXB6 (ENSMFAG00000002294) #25	HOXB5 (ENSMFAG00000042418) #26	HOXB4 (ENSMFAG00000041000) #27	ENSMFAG00000062776	HOXB2 (ENSMFAG00000034146) #29	HOXB1 (ENSMFAG00000052359) #30	SKAP1 (ENSMFAG00000038763) #31	ENSMFAG00000048147	ENSMFAG00000047205	SNX11 (ENSMFAG00000001845) #32	CBX1 (ENSMFAG00000036790) #33	NFE2L1 (ENSMFAG00000035583) #35	COPZ2 (ENSMFAG00000045896) #36
Rhesus	MODERN SPECIES	7	ZNF652 (ENSMMUG00000003453) #8	PHOSPHO1 (ENSMMUG00000002436) #10	ABI3 (ENSMMUG00000002437) #11	B4GALNT2 (ENSMMUG00000015845) #13	ENSMMUG00000057553	CALCOCO2 (ENSMMUG00000012178) #19	IGF2BP1 (ENSMMUG00000011533) #14	GIP (ENSMMUG00000049405) #15	SNF8 (ENSMMUG00000021087) #16	UBE2Z (ENSMMUG00000057164) #17	ATP5MC1 (ENSMMUG00000013395)	ENSMMUG00000016305	TTLL6 (ENSMMUG00000003436) #20	HOXB13 (ENSMMUG00000060879) #21	PRAC1 (ENSMMUG00000053394)	HOXB9 (ENSMMUG00000052505) #22	HOXB8 (ENSMMUG00000020868) #23	HOXB7 (ENSMMUG00000055324) #24	HOXB6 (ENSMMUG00000062283) #25	HOXB5 (ENSMMUG00000051420) #26	ENSMMUG00000045203	HOXB4 (ENSMMUG00000052130) #27	HOXB2 (ENSMMUG00000057001) #29	HOXB1 (ENSMMUG00000022212) #30	SKAP1 (ENSMMUG00000050742) #31	SNX11 (ENSMMUG00000020658) #32	CBX1 (ENSMMUG00000019882) #33	NFE2L1 (ENSMMUG00000021935) #35	COPZ2 (ENSMMUG00000021934) #36	CDK5RAP3 (ENSMMUG00000004760) #37	PRR15L (ENSMMUG00000050551)
Pig-tailed macaque	MODERN SPECIES	494	PHOSPHO1 (ENSMNEG00000028521) #10	ABI3 (ENSMNEG00000036355) #11	GNGT2 (ENSMNEG00000029921) #12	B4GALNT2 (ENSMNEG00000044329) #13	IGF2BP1 (ENSMNEG00000033825) #14	GIP (ENSMNEG00000042307) #15	SNF8 (ENSMNEG00000032473) #16	UBE2Z (ENSMNEG00000040572) #17	ENSMNEG00000011359	ENSMNEG00000027016	CALCOCO2 (ENSMNEG00000041410) #19	TTLL6 (ENSMNEG00000035034) #20	HOXB13 (ENSMNEG00000036275) #21	PRAC2 (ENSMNEG00000038796)	PRAC1 (ENSMNEG00000045191)	HOXB9 (ENSMNEG00000045476) #22	HOXB8 (ENSMNEG00000034944) #23	HOXB7 (ENSMNEG00000040001) #24	HOXB6 (ENSMNEG00000042554) #25	HOXB5 (ENSMNEG00000039003) #26	HOXB4 (ENSMNEG00000032435) #27	HOXB3 (ENSMNEG00000032425) #28	HOXB2 (ENSMNEG00000043416) #29	HOXB1 (ENSMNEG00000036848) #30	ENSMNEG00000033446	SKAP1 (ENSMNEG00000015541) #31	SNX11 (ENSMNEG00000034920) #32	CBX1 (ENSMNEG00000039720) #33	NFE2L1 (ENSMNEG00000037921) #35	COPZ2 (ENSMNEG00000038720) #36	CDK5RAP3 (ENSMNEG00000029039) #37
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00940000157416 #8	ENSGT00390000007741.a.k #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000165611	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Olive baboon	MODERN SPECIES	8	ABI3 (ENSPANG00000042285) #11	GNGT2 (ENSPANG00000022835) #12	B4GALNT2 (ENSPANG00000022834) #13	ENSPANG00000038197	ENSPANG00000049141	IGF2BP1 (ENSPANG00000022833) #14	GIP (ENSPANG00000022832) #15	SNF8 (ENSPANG00000022831) #16	UBE2Z (ENSPANG00000022830) #17	ATP5MC1 (ENSPANG00000022880)	CALCOCO2 (ENSPANG00000022881) #19	ENSPANG00000049214	TTLL6 (ENSPANG00000022885) #20	HOXB13 (ENSPANG00000048407) #21	PRAC1 (ENSPANG00000034268)	HOXB9 (ENSPANG00000022896) #22	HOXB8 (ENSPANG00000022895) #23	HOXB7 (ENSPANG00000041701) #24	HOXB6 (ENSPANG00000022891) #25	HOXB5 (ENSPANG00000022889) #26	HOXB4 (ENSPANG00000022888) #27	ENSPANG00000045928	HOXB2 (ENSPANG00000034765) #29	HOXB1 (ENSPANG00000022886) #30	SKAP1 (ENSPANG00000022897) #31	ENSPANG00000026200	SNX11 (ENSPANG00000022898) #32	CBX1 (ENSPANG00000022906) #33	NFE2L1 (ENSPANG00000022904) #35	COPZ2 (ENSPANG00000022903) #36	CDK5RAP3 (ENSPANG00000022902) #37
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00390000007741.a.k #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000018696.n	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000165611	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Sooty mangabey	MODERN SPECIES	564	PHOSPHO1 (ENSCATG00000040780) #10	ABI3 (ENSCATG00000044608) #11	GNGT2 (ENSCATG00000040371) #12	B4GALNT2 (ENSCATG00000041984) #13	IGF2BP1 (ENSCATG00000041707) #14	ENSCATG00000044943	GIP (ENSCATG00000031593) #15	SNF8 (ENSCATG00000038375) #16	UBE2Z (ENSCATG00000038755) #17	ATP5MC1 (ENSCATG00000030174)	CALCOCO2 (ENSCATG00000007708) #19	ENSCATG00000016293	TTLL6 (ENSCATG00000029768) #20	HOXB13 (ENSCATG00000041758) #21	PRAC1 (ENSCATG00000038550)	HOXB9 (ENSCATG00000002169) #22	HOXB8 (ENSCATG00000025318) #23	HOXB7 (ENSCATG00000042829) #24	HOXB6 (ENSCATG00000043342) #25	HOXB5 (ENSCATG00000027616) #26	HOXB3 (ENSCATG00000031126) #28	HOXB4 (ENSCATG00000040704) #27	HOXB2 (ENSCATG00000035238) #29	HOXB1 (ENSCATG00000035575) #30	SKAP1 (ENSCATG00000044458) #31	ENSCATG00000019817	SNX11 (ENSCATG00000030351) #32	ENSCATG00000034735 ##33	NFE2L1 (ENSCATG00000040775) #35	COPZ2 (ENSCATG00000042708) #36	CDK5RAP3 (ENSCATG00000006699) #37
Drill	MODERN SPECIES	1297	ZNF652 (ENSMLEG00000034995) #8	PHOSPHO1 (ENSMLEG00000039410) #10	ABI3 (ENSMLEG00000030652) #11	GNGT2 (ENSMLEG00000036852) #12	B4GALNT2 (ENSMLEG00000020666) #13	IGF2BP1 (ENSMLEG00000026086) #14	ENSMLEG00000043660	GIP (ENSMLEG00000032963) #15	SNF8 (ENSMLEG00000037501) #16	UBE2Z (ENSMLEG00000043345) #17	ATP5MC1 (ENSMLEG00000026746)	CALCOCO2 (ENSMLEG00000034129) #19	TTLL6 (ENSMLEG00000023683) #20	HOXB13 (ENSMLEG00000043860) #21	PRAC1 (ENSMLEG00000033309)	HOXB9 (ENSMLEG00000030602) #22	HOXB8 (ENSMLEG00000007179) #23	HOXB7 (ENSMLEG00000042331) #24	HOXB6 (ENSMLEG00000029580) #25	HOXB5 (ENSMLEG00000009970) #26	HOXB3 (ENSMLEG00000026268) #28	HOXB4 (ENSMLEG00000029897) #27	HOXB2 (ENSMLEG00000031955) #29	HOXB1 (ENSMLEG00000037557) #30	SKAP1 (ENSMLEG00000029308) #31	SNX11 (ENSMLEG00000039008) #32	CBX1 (ENSMLEG00000038745) #33	NFE2L1 (ENSMLEG00000039330) #35	COPZ2 (ENSMLEG00000039090) #36	CDK5RAP3 (ENSMLEG00000033869) #37	PRR15L (ENSMLEG00000020212)
Rhinopithecus	ANCESTRAL SPECIES	19	ENSGT00940000157416 #8	ENSGT00390000007741.a.k #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Black snub-nosed monkey	MODERN SPECIES	1661	ZNF652 (ENSRBIG00000044859) #8	PHOSPHO1 (ENSRBIG00000041603) #10	ABI3 (ENSRBIG00000020770) #11	GNGT2 (ENSRBIG00000042345) #12	B4GALNT2 (ENSRBIG00000035256) #13	IGF2BP1 (ENSRBIG00000035739) #14	GIP (ENSRBIG00000039886) #15	SNF8 (ENSRBIG00000038039) #16	UBE2Z (ENSRBIG00000038578) #17	ATP5MC1 (ENSRBIG00000026711)	CALCOCO2 (ENSRBIG00000035235) #19	TTLL6 (ENSRBIG00000035925) #20	HOXB13 (ENSRBIG00000035598) #21	PRAC2 (ENSRBIG00000032698)	PRAC1 (ENSRBIG00000041996)	HOXB9 (ENSRBIG00000035654) #22	HOXB8 (ENSRBIG00000043329) #23	HOXB7 (ENSRBIG00000039896) #24	HOXB6 (ENSRBIG00000029050) #25	HOXB5 (ENSRBIG00000015821) #26	HOXB4 (ENSRBIG00000036141) #27	HOXB3 (ENSRBIG00000036705) #28	HOXB2 (ENSRBIG00000029105) #29	HOXB1 (ENSRBIG00000041849) #30	SKAP1 (ENSRBIG00000042563) #31	SNX11 (ENSRBIG00000030129) #32	ENSRBIG00000027048 #33	NFE2L1 (ENSRBIG00000034817) #35	COPZ2 (ENSRBIG00000038810) #36	CDK5RAP3 (ENSRBIG00000039441) #37	PRR15L (ENSRBIG00000030176)
Golden snub-nosed monkey	MODERN SPECIES	585	PHOSPHO1 (ENSRROG00000036306) #10	ABI3 (ENSRROG00000038650) #11	GNGT2 (ENSRROG00000021991) #12	B4GALNT2 (ENSRROG00000001500) #13	ENSRROG00000030406	IGF2BP1 (ENSRROG00000039581) #14	GIP (ENSRROG00000029793) #15	SNF8 (ENSRROG00000041052) #16	UBE2Z (ENSRROG00000038314) #17	ATP5MC1 (ENSRROG00000031127)	CALCOCO2 (ENSRROG00000042598) #19	TTLL6 (ENSRROG00000044208) #20	HOXB13 (ENSRROG00000042147) #21	PRAC2 (ENSRROG00000033208)	PRAC1 (ENSRROG00000039006)	HOXB9 (ENSRROG00000044654) #22	HOXB8 (ENSRROG00000045349) #23	HOXB7 (ENSRROG00000035066) #24	HOXB6 (ENSRROG00000028093) #25	HOXB5 (ENSRROG00000030674) #26	HOXB3 (ENSRROG00000037630) #28	HOXB2 (ENSRROG00000044849) #29	HOXB1 (ENSRROG00000042747) #30	SKAP1 (ENSRROG00000031517) #31	SNX11 (ENSRROG00000029464) #32	CBX1 (ENSRROG00000041227) #33	NFE2L1 (ENSRROG00000044774) #35	COPZ2 (ENSRROG00000030969) #36	CDK5RAP3 (ENSRROG00000044651) #37	PRR15L (ENSRROG00000009484)	PNPO (ENSRROG00000044027)
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00390000007741.a.k #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713.h.b #37	ENSGT00940000154534.a
Hominidae	ANCESTRAL SPECIES	16	ENSGT00390000007741.a.k #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713.h.a #37	ENSGT00940000154534.a
Orangutan	MODERN SPECIES	8	ZNF652 (ENSPPYG00000008919) #8	PHOSPHO1 (ENSPPYG00000008917) #10	ABI3 (ENSPPYG00000008916) #11	ENSPPYG00000008915 #12	B4GALNT2 (ENSPPYG00000008914) #13	IGF2BP1 (ENSPPYG00000008913) #14	GIP (ENSPPYG00000008912) #15	ENSPPYG00000008911 #16	UBE2Z (ENSPPYG00000032681) #17	ATP5MC1 (ENSPPYG00000008909)	CALCOCO2 (ENSPPYG00000008907) #19	TTLL6 (ENSPPYG00000008906) #20	HOXB13 (ENSPPYG00000008904) #21	ENSPPYG00000036609	PRAC1 (ENSPPYG00000008903)	HOXB9 (ENSPPYG00000008902) #22	HOXB8 (ENSPPYG00000038542) #23	HOXB7 (ENSPPYG00000008901) #24	HOXB6 (ENSPPYG00000008899) #25	HOXB5 (ENSPPYG00000008898) #26	HOXB4 (ENSPPYG00000008897) #27	HOXB3 (ENSPPYG00000008896) #28	HOXB2 (ENSPPYG00000008895) #29	HOXB1 (ENSPPYG00000008894) #30	SKAP1 (ENSPPYG00000008893) #31	SNX11 (ENSPPYG00000008892) #32	ENSPPYG00000008891 ##33	NFE2L1 (ENSPPYG00000036998) #35	ENSPPYG00000008889 #36	CDK5RAP3 (ENSPPYG00000008888) #37	PRR15L (ENSPPYG00000008887)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00390000007741.a.k #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713.h.a.a.b #37	ENSGT00940000154534.a
Gorilla	MODERN SPECIES	18	ABI3 (ENSGGOG00000001954) #11	ENSGGOG00000001953 #12	B4GALNT2 (ENSGGOG00000008204) #13	IGF2BP1 (ENSGGOG00000008872) #14	GIP (ENSGGOG00000013847) #15	SNF8 (ENSGGOG00000025290) #16	ENSGGOG00000041818 #17	ENSGGOG00000041027	ATP5MC1 (ENSGGOG00000001626)	ENSGGOG00000040493	CALCOCO2 (ENSGGOG00000005537) #19	TTLL6 (ENSGGOG00000001947) #20	HOXB13 (ENSGGOG00000001945) #21	ENSGGOG00000042122	PRAC1 (ENSGGOG00000027105)	ENSGGOG00000036688 #22	HOXB8 (ENSGGOG00000039810) #23	HOXB7 (ENSGGOG00000002637) #24	HOXB6 (ENSGGOG00000002634) #25	HOXB5 (ENSGGOG00000023582) #26	HOXB3 (ENSGGOG00000012838) #28	HOXB2 (ENSGGOG00000009910) #29	HOXB1 (ENSGGOG00000009904) #30	SKAP1 (ENSGGOG00000012624) #31	ENSGGOG00000025896	CBX1 (ENSGGOG00000024063) #33	NFE2L1 (ENSGGOG00000002268) #35	COPZ2 (ENSGGOG00000002264) #36	ENSGGOG00000022994 #37	PRR15L (ENSGGOG00000037816)	PNPO (ENSGGOG00000003786)
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00390000007741.a.k #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713.h.a.a.b #37	ENSGT00940000154534.a
Pan	ANCESTRAL SPECIES	3	ENSGT00390000007741.a.k #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.u.a #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00860000135909	ENSGT00940000165611	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713.h.a.a.b #37	ENSGT00940000154534.a
Chimpanzee	MODERN SPECIES	8	PHOSPHO1 (ENSPTRG00000009372) #10	ABI3 (ENSPTRG00000009371) #11	GNGT2 (ENSPTRG00000009370) #12	B4GALNT2 (ENSPTRG00000009369) #13	IGF2BP1 (ENSPTRG00000009368) #14	GIP (ENSPTRG00000009367) #15	SNF8 (ENSPTRG00000051067) #16	UBE2Z (ENSPTRG00000009365) #17	ENSPTRG00000051053	ATP5MC1 (ENSPTRG00000009364)	CALCOCO2 (ENSPTRG00000009363) #19	TTLL6 (ENSPTRG00000009361) #20	HOXB13 (ENSPTRG00000009360) #21	PRAC2 (ENSPTRG00000048455)	PRAC1 (ENSPTRG00000009359)	HOXB9 (ENSPTRG00000009358) #22	HOXB8 (ENSPTRG00000048497) #23	HOXB7 (ENSPTRG00000009357) #24	HOXB6 (ENSPTRG00000009356) #25	HOXB5 (ENSPTRG00000009355) #26	HOXB4 (ENSPTRG00000009354) #27	HOXB3 (ENSPTRG00000052423) #28	HOXB2 (ENSPTRG00000009352) #29	HOXB1 (ENSPTRG00000009351) #30	SKAP1 (ENSPTRG00000009350) #31	SNX11 (ENSPTRG00000009349) #32	CBX1 (ENSPTRG00000052115) #33	NFE2L1 (ENSPTRG00000022631) #35	COPZ2 (ENSPTRG00000009346) #36	CDK5RAP3 (ENSPTRG00000009345) #37	PRR15L (ENSPTRG00000047216)
Bonobo	MODERN SPECIES	8	ZNF652 (ENSPPAG00000024727) #8	PHOSPHO1 (ENSPPAG00000042612) #10	ABI3 (ENSPPAG00000025669) #11	ENSPPAG00000028035 #12	B4GALNT2 (ENSPPAG00000033188) #13	IGF2BP1 (ENSPPAG00000040224) #14	ENSPPAG00000029732	SNF8 (ENSPPAG00000030822) #16	ENSPPAG00000029824	ENSPPAG00000001213 #17	ATP5MC1 (ENSPPAG00000039996)	CALCOCO2 (ENSPPAG00000037813) #19	TTLL6 (ENSPPAG00000036197) #20	HOXB13 (ENSPPAG00000027794) #21	PRAC1 (ENSPPAG00000014004)	HOXB9 (ENSPPAG00000028486) #22	HOXB8 (ENSPPAG00000034804) #23	HOXB7 (ENSPPAG00000010963) #24	HOXB6 (ENSPPAG00000032229) #25	HOXB5 (ENSPPAG00000039181) #26	HOXB4 (ENSPPAG00000040659) #27	HOXB3 (ENSPPAG00000032630) #28	HOXB2 (ENSPPAG00000027417) #29	HOXB1 (ENSPPAG00000039129) #30	SKAP1 (ENSPPAG00000039277) #31	SNX11 (ENSPPAG00000033185) #32	ENSPPAG00000030413 #33	NFE2L1 (ENSPPAG00000031737) #35	COPZ2 (ENSPPAG00000043351) #36	ENSPPAG00000029145 #37	PRR15L (ENSPPAG00000003316)
Human	MODERN SPECIES	8	ZNF652 (ENSG00000198740) #8	PHOSPHO1 (ENSG00000173868) #10	ABI3 (ENSG00000108798) #11	GNGT2 (ENSG00000167083) #12	B4GALNT2 (ENSG00000167080) #13	IGF2BP1 (ENSG00000159217) #14	GIP (ENSG00000159224) #15	SNF8 (ENSG00000159210) #16	UBE2Z (ENSG00000159202) #17	ATP5MC1 (ENSG00000159199)	CALCOCO2 (ENSG00000136436) #19	TTLL6 (ENSG00000170703) #20	HOXB13 (ENSG00000159184) #21	PRAC2 (ENSG00000229637)	PRAC1 (ENSG00000159182)	HOXB9 (ENSG00000170689) #22	HOXB8 (ENSG00000120068) #23	HOXB7 (ENSG00000260027) #24	HOXB6 (ENSG00000108511) #25	HOXB5 (ENSG00000120075) #26	HOXB4 (ENSG00000182742) #27	HOXB3 (ENSG00000120093) #28	HOXB2 (ENSG00000173917) #29	HOXB1 (ENSG00000120094) #30	SKAP1 (ENSG00000141293) #31	SNX11 (ENSG00000002919) #32	CBX1 (ENSG00000108468) #33	NFE2L1 (ENSG00000082641) #35	COPZ2 (ENSG00000005243) #36	CDK5RAP3 (ENSG00000108465) #37	PRR15L (ENSG00000167183)
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00950000185410
Eulipotyphla	ANCESTRAL SPECIES	1624																ENSGT00940000161386 #22	ENSGT00940000161230 #24
Hedgehog	MODERN SPECIES	16182																HOXB9 (ENSEEUG00000014249) #22	HOXB7 (ENSEEUG00000014244) #24
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00990000209473	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00950000185410	ENSGT00390000004405.b #36
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00950000185410	ENSGT00390000004405.b #36
Suina	ANCESTRAL SPECIES		ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Pig	MODERN SPECIES	3	ENSSSCG00000045794 #12	ENSSSCG00000048918 #13	ENSSSCG00000038434	ENSSSCG00000040110 #12	ENSSSCG00000027677 #11	ENSSSCG00000033286 #10	ENSSSCG00000030269 #13	IGF2BP1 (ENSSSCG00000023128) #14	GIP (ENSSSCG00000026330) #15	SNF8 (ENSSSCG00000021461) #16	UBE2Z (ENSSSCG00000025638) #17	ATP5MC1 (ENSSSCG00000017544)	CALCOCO2 (ENSSSCG00000017543) #19	TTLL6 (ENSSSCG00000017542) #20	HOXB13 (ENSSSCG00000017541) #21	HOXB9 (ENSSSCG00000061856) #22	HOXB8 (ENSSSCG00000017537) #23	HOXB7 (ENSSSCG00000017538) #24	HOXB6 (ENSSSCG00000017539) #25	HOXB5 (ENSSSCG00000017540) #26	HOXB4 (ENSSSCG00000017535) #27	HOXB3 (ENSSSCG00000017534) #28	HOXB2 (ENSSSCG00000017533) #29	HOXB1 (ENSSSCG00000017532) #30	SKAP1 (ENSSSCG00000017527) #31	SNX11 (ENSSSCG00000017528) #32	CBX1 (ENSSSCG00000017529) #33	NFE2L1 (ENSSSCG00000017525) #35	COPZ2 (ENSSSCG00000017526) #36	CDK5RAP3 (ENSSSCG00000017524) #37	PRR15L (ENSSSCG00000054179)
Chacoan peccary	MODERN SPECIES	145	NGFR (ENSCWAG00000022030)	PHB1 (ENSCWAG00000022033) #7	ZNF652 (ENSCWAG00000022035) #8	PHOSPHO1 (ENSCWAG00000022036) #10	ABI3 (ENSCWAG00000022038) #11	GNGT2 (ENSCWAG00000022039) #12	ENSCWAG00000022041	IGF2BP1 (ENSCWAG00000022044) #14	GIP (ENSCWAG00000022046) #15	SNF8 (ENSCWAG00000022048) #16	UBE2Z (ENSCWAG00000022050) #17	ATP5MC1 (ENSCWAG00000022052)	CALCOCO2 (ENSCWAG00000022056) #19	TTLL6 (ENSCWAG00000022059) #20	HOXB13 (ENSCWAG00000022063) #21	HOXB9 (ENSCWAG00000022065) #22	HOXB8 (ENSCWAG00000022066) #23	HOXB7 (ENSCWAG00000022067) #24	HOXB6 (ENSCWAG00000022069) #25	HOXB5 (ENSCWAG00000022071) #26	HOXB4 (ENSCWAG00000022074) #27	HOXB3 (ENSCWAG00000022077) #28	HOXB2 (ENSCWAG00000022078) #29	HOXB1 (ENSCWAG00000022080) #30	SKAP1 (ENSCWAG00000000046) #31	SNX11 (ENSCWAG00000000070) #32	CBX1 (ENSCWAG00000000121) #33	NFE2L1 (ENSCWAG00000000185) #35	COPZ2 (ENSCWAG00000000341) #36	CDK5RAP3 (ENSCWAG00000000377) #37	PRR15L (ENSCWAG00000000410)
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00950000185410	ENSGT00390000004405.b #36
Camelidae	ANCESTRAL SPECIES	60	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00990000209473	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.a.a ##33	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00950000185410	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Arabian camel	MODERN SPECIES	7	ENSCDRG00005016485 #7	ZNF652 (ENSCDRG00005016507) #8	PHOSPHO1 (ENSCDRG00005016526) #10	ABI3 (ENSCDRG00005016559) #11	ENSCDRG00005016619 #12	B4GALNT2 (ENSCDRG00005016644) #13	IGF2BP1 (ENSCDRG00005016778) #14	GIP (ENSCDRG00005016991) #15	ENSCDRG00005017040 #16	ENSCDRG00005017061	UBE2Z (ENSCDRG00005017075) #17	ENSCDRG00005017142 #18	CALCOCO2 (ENSCDRG00005017213) #19	TTLL6 (ENSCDRG00005017585) #20	HOXB13 (ENSCDRG00005017741) #21	HOXB9 (ENSCDRG00005017862) #22	HOXB7 (ENSCDRG00005018007) #24	HOXB6 (ENSCDRG00005018029) #25	HOXB5 (ENSCDRG00005018055) #26	HOXB4 (ENSCDRG00005018079) #27	HOXB3 (ENSCDRG00005018104) #28	HOXB2 (ENSCDRG00005018121) #29	HOXB1 (ENSCDRG00005018147) #30	SKAP1 (ENSCDRG00005018166) #31	SNX11 (ENSCDRG00005018232) #32	CBX1 (ENSCDRG00005018330) ##33	NFE2L1 (ENSCDRG00005018357) #35	ENSCDRG00005018515	COPZ2 (ENSCDRG00005018538) #36	CDK5RAP3 (ENSCDRG00005018564) #37	PRR15L (ENSCDRG00005018636)
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00950000185410
Cetacea	ANCESTRAL SPECIES	5	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a.c #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.g #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Odontoceti	ANCESTRAL SPECIES	16	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a.c.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.g #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Odontoceti_a	ANCESTRAL SPECIES	14	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a.c.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.g #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Odontoceti_b	ANCESTRAL SPECIES	16	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a.c.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.g #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Monodontidae	ANCESTRAL SPECIES	16	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a.c.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.g #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Narwhal	MODERN SPECIES	316	NGFR (ENSMMNG00015022046)	PHB1 (ENSMMNG00015022047) #7	ZNF652 (ENSMMNG00015022048) #8	ENSMMNG00015022049 #10	ABI3 (ENSMMNG00015022050) #11	GNGT2 (ENSMMNG00015022051) #12	B4GALNT2 (ENSMMNG00015022052) #13	IGF2BP1 (ENSMMNG00015022053) #14	GIP (ENSMMNG00015022055) #15	ENSMMNG00015022056 #16	UBE2Z (ENSMMNG00015022057) #17	ENSMMNG00015022058 #18	CALCOCO2 (ENSMMNG00015022060) #19	TTLL6 (ENSMMNG00015015987) #20	HOXB13 (ENSMMNG00015016080) #21	HOXB9 (ENSMMNG00015016160) #22	HOXB8 (ENSMMNG00015016175) #23	HOXB7 (ENSMMNG00015016197) #24	HOXB6 (ENSMMNG00015016215) #25	HOXB5 (ENSMMNG00015016235) #26	HOXB4 (ENSMMNG00015016252) #27	HOXB3 (ENSMMNG00015016287) #28	HOXB2 (ENSMMNG00015016324) #29	HOXB1 (ENSMMNG00015016356) #30	SKAP1 (ENSMMNG00015016386) #31	SNX11 (ENSMMNG00015016452) #32	CBX1 (ENSMMNG00015016582) #33	NFE2L1 (ENSMMNG00015016634) #35	COPZ2 (ENSMMNG00015016743) #36	CDK5RAP3 (ENSMMNG00015016820) #37	PRR15L (ENSMMNG00015016868)
Beluga whale	MODERN SPECIES	26	NGFR (ENSDLEG00000004981)	PHB (ENSDLEG00000004975) #7	ZNF652 (ENSDLEG00000004967) #8	PHOSPHO1 (ENSDLEG00000004963) #10	ABI3 (ENSDLEG00000004950) #11	GNGT2 (ENSDLEG00000004944) #12	B4GALNT2 (ENSDLEG00000004906) #13	IGF2BP1 (ENSDLEG00000004887) #14	GIP (ENSDLEG00000004882) #15	SNF8 (ENSDLEG00000004876) #16	UBE2Z (ENSDLEG00000004871) #17	ATP5G1 (ENSDLEG00000004867) #18	CALCOCO2 (ENSDLEG00000004861) #19	TTLL6 (ENSDLEG00000004850) #20	HOXB13 (ENSDLEG00000004844) #21	HOXB9 (ENSDLEG00000004838) #22	HOXB8 (ENSDLEG00000004837) #23	HOXB7 (ENSDLEG00000004834) #24	HOXB6 (ENSDLEG00000004829) #25	HOXB5 (ENSDLEG00000004826) #26	HOXB4 (ENSDLEG00000004820) #27	HOXB3 (ENSDLEG00000004817) #28	HOXB2 (ENSDLEG00000004813) #29	HOXB1 (ENSDLEG00000004807) #30	SKAP1 (ENSDLEG00000004779) #31	SNX11 (ENSDLEG00000004765) #32	CBX1 (ENSDLEG00000004754) ##33	NFE2L1 (ENSDLEG00000004744) #35	ENSDLEG00000004734	COPZ2 (ENSDLEG00000004721) #36	CDK5RAP3 (ENSDLEG00000004709) #37
Vaquita	MODERN SPECIES	12	PHB1 (ENSPSNG00000015363) #7	ZNF652 (ENSPSNG00000015435) #8	PHOSPHO1 (ENSPSNG00000015535) #10	ABI3 (ENSPSNG00000015585) #11	GNGT2 (ENSPSNG00000015777) #12	B4GALNT2 (ENSPSNG00000015839) #13	ENSPSNG00000016103	IGF2BP1 (ENSPSNG00000016168) #14	GIP (ENSPSNG00000016483) #15	SNF8 (ENSPSNG00000016533) #16	UBE2Z (ENSPSNG00000016576) #17	ENSPSNG00000016635 #18	CALCOCO2 (ENSPSNG00000016749) #19	TTLL6 (ENSPSNG00000017015) #20	HOXB13 (ENSPSNG00000017233) #21	HOXB9 (ENSPSNG00000017398) #22	HOXB8 (ENSPSNG00000017436) #23	HOXB7 (ENSPSNG00000017482) #24	HOXB6 (ENSPSNG00000017525) #25	HOXB5 (ENSPSNG00000017559) #26	HOXB4 (ENSPSNG00000017604) #27	HOXB3 (ENSPSNG00000017636) #28	HOXB2 (ENSPSNG00000017708) #29	HOXB1 (ENSPSNG00000017728) #30	SKAP1 (ENSPSNG00000017760) #31	SNX11 (ENSPSNG00000017889) #32	ENSPSNG00000017984 #33	NFE2L1 (ENSPSNG00000018052) #35	COPZ2 (ENSPSNG00000018262) #36	CDK5RAP3 (ENSPSNG00000018321) #37	PRR15L (ENSPSNG00000018399)
Dolphin	MODERN SPECIES	4465																HOXB9 (ENSTTRG00000012262) #22	HOXB8 (ENSTTRG00000012260) #23	ENSTTRG00000012257	HOXB6 (ENSTTRG00000012252) #25	HOXB5 (ENSTTRG00000012251) #26	HOXB4 (ENSTTRG00000012249) #27	HOXB3 (ENSTTRG00000012246) #28	HOXB2 (ENSTTRG00000012244) #29	HOXB1 (ENSTTRG00000012240) #30
Sperm whale	MODERN SPECIES	5	FAM117A (ENSPCTG00005004179)	SLC35B1 (ENSPCTG00005004200)	SPOP (ENSPCTG00005004228)	NXPH3 (ENSPCTG00005004256)	NGFR (ENSPCTG00005004279)	ZNF652 (ENSPCTG00005004307) #8	B4GALNT2 (ENSPCTG00005004337) #13	IGF2BP1 (ENSPCTG00005004404) #14	GIP (ENSPCTG00005004443) #15	ENSPCTG00005004464	SNF8 (ENSPCTG00005004481) #16	ATP5MC1 (ENSPCTG00005004516) #17	CALCOCO2 (ENSPCTG00005004611) #19	TTLL6 (ENSPCTG00005004739) #20	HOXB13 (ENSPCTG00005004788) #21	HOXB9 (ENSPCTG00005004847) #22	HOXB8 (ENSPCTG00005004864) #23	HOXB7 (ENSPCTG00005004882) #24	HOXB6 (ENSPCTG00005004887) #25	HOXB5 (ENSPCTG00005004905) #26	HOXB4 (ENSPCTG00005004920) #27	HOXB3 (ENSPCTG00005004930) #28	HOXB2 (ENSPCTG00005004951) #29	HOXB1 (ENSPCTG00005004966) #30	SKAP1 (ENSPCTG00005004985) #31	CBX1 (ENSPCTG00005005034) #33	ENSPCTG00005005083	TBX21 (ENSPCTG00005005105)	TBKBP1 (ENSPCTG00005005144)	KPNB1 (ENSPCTG00005005195)	NPEPPS (ENSPCTG00005005245)
Blue whale	MODERN SPECIES	12	PHB1 (ENSBMSG00010016580) #7	ZNF652 (ENSBMSG00010016625) #8	ENSBMSG00010016656 #10	ABI3 (ENSBMSG00010016693) #11	GNGT2 (ENSBMSG00010016723) #12	B4GALNT2 (ENSBMSG00010016748) #13	IGF2BP1 (ENSBMSG00010016894) #14	GIP (ENSBMSG00010017026) #15	SNF8 (ENSBMSG00010017067) #16	UBE2Z (ENSBMSG00010017102) #17	ATP5MC1 (ENSBMSG00010017142)	ENSBMSG00010017179	CALCOCO2 (ENSBMSG00010017255) #19	TTLL6 (ENSBMSG00010017444) #20	HOXB13 (ENSBMSG00010017547) #21	HOXB9 (ENSBMSG00010017655) #22	HOXB8 (ENSBMSG00010017685) #23	HOXB7 (ENSBMSG00010017724) #24	HOXB6 (ENSBMSG00010017746) #25	HOXB5 (ENSBMSG00010017772) #26	HOXB4 (ENSBMSG00010017814) #27	HOXB3 (ENSBMSG00010017838) #28	HOXB2 (ENSBMSG00010017860) #29	HOXB1 (ENSBMSG00010017892) #30	SKAP1 (ENSBMSG00010017921) #31	SNX11 (ENSBMSG00010018006) #32	CBX1 (ENSBMSG00010018099) #33	NFE2L1 (ENSBMSG00010018163) #35	COPZ2 (ENSBMSG00010018306) #36	CDK5RAP3 (ENSBMSG00010018481) #37	PRR15L (ENSBMSG00010018513)
Pecora	ANCESTRAL SPECIES	1	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00950000185410
Yarkand deer	MODERN SPECIES	28	NGFR (ENSCHYG00000004216)	PHB1 (ENSCHYG00000004248) #7	ZNF652 (ENSCHYG00000004272) #8	ENSCHYG00000004303 #10	ABI3 (ENSCHYG00000004324) #11	B4GALNT2 (ENSCHYG00000004351) #13	IGF2BP1 (ENSCHYG00000004387) #14	GIP (ENSCHYG00000004425) #15	SNF8 (ENSCHYG00000004443) #16	UBE2Z (ENSCHYG00000004456) #17	ENSCHYG00000004476 #18	ENSCHYG00000004493	ENSCHYG00000004521 #19	TTLL6 (ENSCHYG00000004571) #20	HOXB13 (ENSCHYG00000004599) #21	HOXB9 (ENSCHYG00000004623) #22	HOXB8 (ENSCHYG00000004637) #23	HOXB7 (ENSCHYG00000004645) #24	HOXB6 (ENSCHYG00000004651) #25	HOXB5 (ENSCHYG00000004658) #26	HOXB4 (ENSCHYG00000004668) #27	HOXB3 (ENSCHYG00000004670) #28	HOXB2 (ENSCHYG00000004674) #29	HOXB1 (ENSCHYG00000004684) #30	SKAP1 (ENSCHYG00000004692) #31	ENSCHYG00000004720	SNX11 (ENSCHYG00000004737) #32	CBX1 (ENSCHYG00000004750) #33	NFE2L1 (ENSCHYG00000004781) #35	COPZ2 (ENSCHYG00000004829) #36	ENSCHYG00000004851
Percora_a	ANCESTRAL SPECIES	2	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Siberian musk deer	MODERN SPECIES	1210	ZNF652 (ENSMMSG00000024488) #8	PHOSPHO1 (ENSMMSG00000024489) #10	ABI3 (ENSMMSG00000024491) #11	GNGT2 (ENSMMSG00000024493) #12	ENSMMSG00000024495	B4GALNT2 (ENSMMSG00000024496) #13	ENSMMSG00000024500	IGF2BP1 (ENSMMSG00000024501) #14	GIP (ENSMMSG00000024503) #15	ENSMMSG00000024504 #16	UBE2Z (ENSMMSG00000024505) #17	ATP5MC1 (ENSMMSG00000024506)	CALCOCO2 (ENSMMSG00000024509) #19	TTLL6 (ENSMMSG00000024514) #20	HOXB13 (ENSMMSG00000024516) #21	HOXB9 (ENSMMSG00000024520) #22	HOXB8 (ENSMMSG00000024522) #23	HOXB7 (ENSMMSG00000024523) #24	HOXB6 (ENSMMSG00000024525) #25	HOXB5 (ENSMMSG00000024526) #26	HOXB4 (ENSMMSG00000024528) #27	ENSMMSG00000024530	HOXB3 (ENSMMSG00000024531) #28	HOXB2 (ENSMMSG00000024532) #29	HOXB1 (ENSMMSG00000024533) #30	ENSMMSG00000024535	SKAP1 (ENSMMSG00000024536) #31	SNX11 (ENSMMSG00000024538) #32	CBX1 (ENSMMSG00000024540) #33	NFE2L1 (ENSMMSG00000024541) #35	COPZ2 (ENSMMSG00000024546) #36
Bovidae	ANCESTRAL SPECIES	2	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Bovinae	ANCESTRAL SPECIES		ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Bos	ANCESTRAL SPECIES	1	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.i #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Bos_a	ANCESTRAL SPECIES		ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.i #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Wild yak	MODERN SPECIES	319	NGFR (ENSBMUG00000000290)	PHB1 (ENSBMUG00000000329) #7	ZNF652 (ENSBMUG00000000351) #8	PHOSPHO1 (ENSBMUG00000000370) #10	ABI3 (ENSBMUG00000000408) #11	GNGT2 (ENSBMUG00000000436) #12	B4GALNT2 (ENSBMUG00000000477) #13	IGF2BP1 (ENSBMUG00000000549) #14	GIP (ENSBMUG00000000594) #15	SNF8 (ENSBMUG00000000607) #16	UBE2Z (ENSBMUG00000000624) #17	ENSBMUG00000000644 #18	CALCOCO2 (ENSBMUG00000000720) #19	ENSBMUG00000000753 #20	HOXB13 (ENSBMUG00000000770) #21	HOXB9 (ENSBMUG00000000804) #22	HOXB8 (ENSBMUG00000000824) #23	HOXB7 (ENSBMUG00000000832) #24	HOXB6 (ENSBMUG00000000839) #25	HOXB5 (ENSBMUG00000000849) #26	HOXB4 (ENSBMUG00000000867) #27	HOXB3 (ENSBMUG00000000876) #28	HOXB2 (ENSBMUG00000000885) #29	HOXB1 (ENSBMUG00000000891) #30	ENSBMUG00000000901	SKAP1 (ENSBMUG00000000925) #31	SNX11 (ENSBMUG00000000953) #32	CBX1 (ENSBMUG00000000974) #33	NFE2L1 (ENSBMUG00000001054) #35	COPZ2 (ENSBMUG00000001081) #36	CDK5RAP3 (ENSBMUG00000001110) #37
Domestic yak	MODERN SPECIES	10	NGFR (ENSBGRG00000023500)	PHB1 (ENSBGRG00000023342) #7	ENSBGRG00000023290	ZNF652 (ENSBGRG00000023208) #8	PHOSPHO1 (ENSBGRG00000023170) #10	ABI3 (ENSBGRG00000022961) #11	B4GALNT2 (ENSBGRG00000022672) #13	IGF2BP1 (ENSBGRG00000022442) #14	GIP (ENSBGRG00000022397) #15	SNF8 (ENSBGRG00000022296) #16	UBE2Z (ENSBGRG00000022223) #17	ENSBGRG00000022156 #18	CALCOCO2 (ENSBGRG00000021810) #19	TTLL6 (ENSBGRG00000021744) #20	HOXB13 (ENSBGRG00000021718) #21	HOXB9 (ENSBGRG00000021683) #22	HOXB8 (ENSBGRG00000021618) #23	HOXB6 (ENSBGRG00000021579) #25	HOXB5 (ENSBGRG00000021555) #26	HOXB4 (ENSBGRG00000021501) #27	HOXB3 (ENSBGRG00000021464) #28	HOXB2 (ENSBGRG00000021425) #29	HOXB1 (ENSBGRG00000021404) #30	SKAP1 (ENSBGRG00000021202) #31	SNX11 (ENSBGRG00000021141) #32	CBX1 (ENSBGRG00000021062) #33	NFE2L1 (ENSBGRG00000020783) #35	COPZ2 (ENSBGRG00000020574) #36	CDK5RAP3 (ENSBGRG00000020283) #37	ENSBGRG00000020194	PNPO (ENSBGRG00000019898)
Bos_b	ANCESTRAL SPECIES	15	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.i #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Cow	MODERN SPECIES	10	NGFR (ENSBTAG00000020979)	PHB1 (ENSBTAG00000017120) #7	ZNF652 (ENSBTAG00000001919) #8	PHOSPHO1 (ENSBTAG00000000033) #10	ABI3 (ENSBTAG00000000032) #11	GNGT2 (ENSBTAG00000047325) #12	B4GALNT2 (ENSBTAG00000009864) #13	IGF2BP1 (ENSBTAG00000011736) #14	GIP (ENSBTAG00000005045) #15	SNF8 (ENSBTAG00000018803) #16	UBE2Z (ENSBTAG00000018802) #17	ATP5MC1 (ENSBTAG00000018339) #18	CALCOCO2 (ENSBTAG00000007935) #19	TTLL6 (ENSBTAG00000009332) #20	HOXB13 (ENSBTAG00000014663) #21	HOXB9 (ENSBTAG00000054623) #22	HOXB8 (ENSBTAG00000054162) #23	HOXB7 (ENSBTAG00000005546) #24	HOXB6 (ENSBTAG00000050006) #25	HOXB5 (ENSBTAG00000045835) #26	HOXB4 (ENSBTAG00000039599) #27	HOXB3 (ENSBTAG00000021427) #28	HOXB2 (ENSBTAG00000009979) #29	HOXB1 (ENSBTAG00000007603) #30	SKAP1 (ENSBTAG00000000641) #31	SNX11 (ENSBTAG00000020321) #32	CBX1 (ENSBTAG00000002949) #33	NFE2L1 (ENSBTAG00000013653) #35	COPZ2 (ENSBTAG00000039954) #36	CDK5RAP3 (ENSBTAG00000014202) #37	PRR15L (ENSBTAG00000012249)
Hybrid Bos Indicus	MODERN SPECIES	10	NXPH3 (ENSBIXG00005008120)	NGFR (ENSBIXG00005008101)	PHB1 (ENSBIXG00005008066) #7	ZNF652 (ENSBIXG00005008029) #8	PHOSPHO1 (ENSBIXG00005007996) #10	ABI3 (ENSBIXG00005007948) #11	B4GALNT2 (ENSBIXG00005007929) #13	IGF2BP1 (ENSBIXG00005007917) #14	GIP (ENSBIXG00005007892) #15	SNF8 (ENSBIXG00005007866) #16	UBE2Z (ENSBIXG00005029277) #17	ENSBIXG00005029305 #18	CALCOCO2 (ENSBIXG00005029366) #19	ENSBIXG00005029447 #20	HOXB13 (ENSBIXG00005029474) #21	HOXB9 (ENSBIXG00005029519) #22	HOXB8 (ENSBIXG00005029530) #23	HOXB7 (ENSBIXG00005029546) #24	HOXB6 (ENSBIXG00005029554) #25	HOXB5 (ENSBIXG00005029559) #26	HOXB4 (ENSBIXG00005029577) #27	HOXB3 (ENSBIXG00005029591) #28	HOXB2 (ENSBIXG00005029607) #29	HOXB1 (ENSBIXG00005029618) #30	ENSBIXG00005029636	SKAP1 (ENSBIXG00005029657) #31	SNX11 (ENSBIXG00005029679) #32	CBX1 (ENSBIXG00005029691) #33	NFE2L1 (ENSBIXG00005029748) #35	COPZ2 (ENSBIXG00005029862) #36	CDK5RAP3 (ENSBIXG00005029886) #37
American bison	MODERN SPECIES	3101	NGFR (ENSBBBG00000021212)	PHB1 (ENSBBBG00000021247) #7	ZNF652 (ENSBBBG00000007191) #8	PHOSPHO1 (ENSBBBG00000005686) #10	ABI3 (ENSBBBG00000021279) #11	GNGT2 (ENSBBBG00000021294) #12	B4GALNT2 (ENSBBBG00000021305) #13	IGF2BP1 (ENSBBBG00000021334) #14	GIP (ENSBBBG00000021349) #15	SNF8 (ENSBBBG00000021356) #16	UBE2Z (ENSBBBG00000021371) #17	ATP5MC1 (ENSBBBG00000021377)	CALCOCO2 (ENSBBBG00000005726) #19	TTLL6 (ENSBBBG00000021540) #20	HOXB13 (ENSBBBG00000021546) #21	HOXB9 (ENSBBBG00000021558) #22	HOXB7 (ENSBBBG00000021565) #24	HOXB6 (ENSBBBG00000021567) #25	HOXB5 (ENSBBBG00000021577) #26	HOXB4 (ENSBBBG00000021585) #27	HOXB3 (ENSBBBG00000005740) #28	HOXB2 (ENSBBBG00000021598) #29	HOXB1 (ENSBBBG00000021601) #30	SKAP1 (ENSBBBG00000021634) #31	SNX11 (ENSBBBG00000021652) #32	ENSBBBG00000021675 ##33	NFE2L1 (ENSBBBG00000021740) #35	COPZ2 (ENSBBBG00000021782) #36	CDK5RAP3 (ENSBBBG00000021808) #37	PRR15L (ENSBBBG00000021809)	PNPO (ENSBBBG00000021862)
Caprinae	ANCESTRAL SPECIES	1	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.g.a #16	ENSGT01100000264599	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00940000154688.b.j	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Goat	MODERN SPECIES	10	PHB1 (ENSCHIG00000012405) #7	ZNF652 (ENSCHIG00000025825) #8	PHOSPHO1 (ENSCHIG00000020131) #10	ABI3 (ENSCHIG00000025692) #11	GNGT2 (ENSCHIG00000022700) #12	B4GALNT2 (ENSCHIG00000013924) #13	IGF2BP1 (ENSCHIG00000022316) #14	GIP (ENSCHIG00000010936) #15	SNF8 (ENSCHIG00000014794) #16	ENSCHIG00000020962	UBE2Z (ENSCHIG00000003883) #17	ENSCHIG00000016881 #18	CALCOCO2 (ENSCHIG00000025313) #19	TTLL6 (ENSCHIG00000022654) #20	HOXB13 (ENSCHIG00000026703) #21	HOXB9 (ENSCHIG00000022791) #22	HOXB8 (ENSCHIG00000015504) #23	HOXB7 (ENSCHIG00000017532) #24	HOXB6 (ENSCHIG00000008881) #25	HOXB5 (ENSCHIG00000023147) #26	HOXB4 (ENSCHIG00000025323) #27	HOXB3 (ENSCHIG00000013978) #28	HOXB2 (ENSCHIG00000025836) #29	HOXB1 (ENSCHIG00000017872) #30	ENSCHIG00000010180	ENSCHIG00000015920 #31	ENSCHIG00000026878 #31	SNX11 (ENSCHIG00000017547) #32	CBX1 (ENSCHIG00000010985) #33	NFE2L1 (ENSCHIG00000015427) #35	COPZ2 (ENSCHIG00000026544) #36
Rambouillet Sheep	MODERN SPECIES	2	PHB (ENSOARG00020010257) #7	ZNF652 (ENSOARG00020010202) #8	PHOSPHO1 (ENSOARG00020010143) #10	ABI3 (ENSOARG00020010038) #11	GNGT2 (ENSOARG00020009965) #12	B4GALNT2 (ENSOARG00020022870) #13	ENSOARG00020022839	IGF2BP1 (ENSOARG00020022766) #14	GIP (ENSOARG00020022695) #15	UBE2Z (ENSOARG00020022664) #17	ATP5MC1 (ENSOARG00020022590) #18	CALCOCO2 (ENSOARG00020022295) #19	ENSOARG00020022258 #20	SNF8 (ENSOARG00020022227) #16	HOXB13 (ENSOARG00020022195) #21	HOXB9 (ENSOARG00020022138) #22	HOXB8 (ENSOARG00020022064) #23	HOXB7 (ENSOARG00020022042) #24	HOXB6 (ENSOARG00020022021) #25	HOXB5 (ENSOARG00020022004) #26	HOXB4 (ENSOARG00020021954) #27	HOXB3 (ENSOARG00020021943) #28	HOXB2 (ENSOARG00020021907) #29	HOXB1 (ENSOARG00020021886) #30	SKAP1 (ENSOARG00020021817) #31	SNX11 (ENSOARG00020021783) #32	CBX1 (ENSOARG00020021741) #33	NFE2L1 (ENSOARG00020021460) #35	COPZ2 (ENSOARG00020021377) #36	CDK5RAP3 (ENSOARG00020021339) #37	PRR15L (ENSOARG00020021319)
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00990000209473	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00950000185410	ENSGT00390000004405.b #36
Carnivora	ANCESTRAL SPECIES	9	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00990000209473	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00950000185410	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Caniformia	ANCESTRAL SPECIES	6	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00990000209473	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00950000185410	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Canidae	ANCESTRAL SPECIES	2	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.c #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.c #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Dog	MODERN SPECIES	37	NGFR (ENSCAFG00845011173)	ZNF652 (ENSCAFG00845011079) #8	PHB1 (ENSCAFG00845010966) #7	PHOSPHO1 (ENSCAFG00845010884) #10	ABI3 (ENSCAFG00845010830) #11	ENSCAFG00845010742 #7	B4GALNT2 (ENSCAFG00845010693) #13	IGF2BP1 (ENSCAFG00845010596) #14	GIP (ENSCAFG00845010532) #15	SNF8 (ENSCAFG00845010455) #16	UBE2Z (ENSCAFG00845010395) #17	ATP5MC1 (ENSCAFG00845010336) #18	CALCOCO2 (ENSCAFG00845010119) #19	TTLL6 (ENSCAFG00845010017) #20	HOXB13 (ENSCAFG00845009992) #21	HOXB9 (ENSCAFG00845009956) #22	HOXB8 (ENSCAFG00845009931) #23	HOXB7 (ENSCAFG00845009899) #24	HOXB6 (ENSCAFG00845009871) #25	HOXB5 (ENSCAFG00845009832) #26	HOXB4 (ENSCAFG00845017264) #27	HOXB3 (ENSCAFG00845017188) #28	HOXB2 (ENSCAFG00845017142) #29	HOXB1 (ENSCAFG00845017096) #30	SKAP1 (ENSCAFG00845016959) #31	SNX11 (ENSCAFG00845016720) #32	CBX1 (ENSCAFG00845016596) #33	NFE2L1 (ENSCAFG00845016388) #35	COPZ2 (ENSCAFG00845016156) #36	CDK5RAP3 (ENSCAFG00845016051) #37	ENSCAFG00845016000
Dingo	MODERN SPECIES	150	ENSCAFG00020023425 #7	ZNF652 (ENSCAFG00020023420) #8	PHOSPHO1 (ENSCAFG00020023419) #10	ABI3 (ENSCAFG00020023410) #11	GNGT2 (ENSCAFG00020023405) #12	B4GALNT2 (ENSCAFG00020023386) #13	ENSCAFG00020023382	IGF2BP1 (ENSCAFG00020023369) #14	GIP (ENSCAFG00020023360) #15	SNF8 (ENSCAFG00020023354) #16	UBE2Z (ENSCAFG00020023351) #17	ENSCAFG00020023349 #18	CALCOCO2 (ENSCAFG00020023334) #19	TTLL6 (ENSCAFG00020023324) #20	HOXB13 (ENSCAFG00020023319) #21	HOXB9 (ENSCAFG00020023312) #22	HOXB8 (ENSCAFG00020023306) #23	ENSCAFG00020023303 #24	HOXB6 (ENSCAFG00020023302) #25	HOXB5 (ENSCAFG00020023301) #26	HOXB4 (ENSCAFG00020023297) #27	HOXB3 (ENSCAFG00020023294) #28	HOXB2 (ENSCAFG00020023293) #29	HOXB1 (ENSCAFG00020023290) #30	SKAP1 (ENSCAFG00020023287) #31	SNX11 (ENSCAFG00020023282) #32	CBX1 (ENSCAFG00020023275) #33	NFE2L1 (ENSCAFG00020023270) #35	COPZ2 (ENSCAFG00020023263) #36	CDK5RAP3 (ENSCAFG00020023258) #37	PRR15L (ENSCAFG00020023256)
Red fox	MODERN SPECIES	20	ENSVVUG00000003547 #7	ZNF652 (ENSVVUG00000003513) #8	PHOSPHO1 (ENSVVUG00000003505) #10	ABI3 (ENSVVUG00000003493) #11	GNGT2 (ENSVVUG00000003489) #12	B4GALNT2 (ENSVVUG00000003458) #13	ENSVVUG00000003456 #7	IGF2BP1 (ENSVVUG00000003451) #14	GIP (ENSVVUG00000003440) #15	SNF8 (ENSVVUG00000003434) #16	UBE2Z (ENSVVUG00000003424) #17	ATP5MC1 (ENSVVUG00000003411) #18	CALCOCO2 (ENSVVUG00000003399) #19	TTLL6 (ENSVVUG00000003393) #20	HOXB13 (ENSVVUG00000003382) #21	HOXB9 (ENSVVUG00000003367) #22	HOXB8 (ENSVVUG00000003366) #23	HOXB7 (ENSVVUG00000003360) #24	HOXB6 (ENSVVUG00000003359) #25	HOXB5 (ENSVVUG00000003354) #26	ENSVVUG00000003340 #27	HOXB3 (ENSVVUG00000003329) #28	HOXB2 (ENSVVUG00000003328) #29	HOXB1 (ENSVVUG00000003325) #30	SKAP1 (ENSVVUG00000003297) #31	SNX11 (ENSVVUG00000003276) #32	ENSVVUG00000003272 #33	NFE2L1 (ENSVVUG00000003262) #35	COPZ2 (ENSVVUG00000003249) #36	CDK5RAP3 (ENSVVUG00000003227) #37	PRR15L (ENSVVUG00000003218)
Caniformia_b	ANCESTRAL SPECIES	21	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a.b #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00990000209473	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00950000185410	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Ursidae	ANCESTRAL SPECIES	18	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a.b #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00950000185410	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Ursus	ANCESTRAL SPECIES	67	ENSGT00950000182883.a.a	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00940000161380 #11	ENSGT01100000263525.b.a.b #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00950000185410	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
American black bear	MODERN SPECIES	3149															HOXB13 (ENSUAMG00000021914) #21	HOXB9 (ENSUAMG00000021910) #22	HOXB8 (ENSUAMG00000021909) #23	HOXB7 (ENSUAMG00000021908) #24	HOXB6 (ENSUAMG00000021905) #25	HOXB5 (ENSUAMG00000021904) #26	HOXB4 (ENSUAMG00000021902) #27
Giant Panda	MODERN SPECIES	4	PHB1 (ENSAMEG00000012364) #7	ZNF652 (ENSAMEG00000012387) #8	PHOSPHO1 (ENSAMEG00000031233) #10	ABI3 (ENSAMEG00000005141) #11	GNGT2 (ENSAMEG00000005139) #12	B4GALNT2 (ENSAMEG00000005108) #13	IGF2BP1 (ENSAMEG00000005087) #14	GIP (ENSAMEG00000005081) #15	SNF8 (ENSAMEG00000005062) #16	UBE2Z (ENSAMEG00000005049) #17	ATP5MC1 (ENSAMEG00000005038) #18	CALCOCO2 (ENSAMEG00000005015) #19	ENSAMEG00000005000 #20	HOXB13 (ENSAMEG00000026873) #21	ENSAMEG00000026258	HOXB9 (ENSAMEG00000024921) #22	ENSAMEG00000004982 #23	HOXB7 (ENSAMEG00000004977) #24	HOXB6 (ENSAMEG00000004971) #25	HOXB5 (ENSAMEG00000004967) #26	HOXB4 (ENSAMEG00000028329) #27	HOXB3 (ENSAMEG00000027375) #28	HOXB2 (ENSAMEG00000030987) #29	HOXB1 (ENSAMEG00000004935) #30	SKAP1 (ENSAMEG00000004919) #31	SNX11 (ENSAMEG00000004898) #32	CBX1 (ENSAMEG00000004890) #33	NFE2L1 (ENSAMEG00000004881) #35	COPZ2 (ENSAMEG00000004850) #36	ENSAMEG00000030152	CDK5RAP3 (ENSAMEG00000004818) #37
Mustelinae	ANCESTRAL SPECIES	2	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a.b #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00990000209473	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00950000185410	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
American mink	MODERN SPECIES	92	PHB1 (ENSNVIG00000006553) #7	ZNF652 (ENSNVIG00000006521) #8	PHOSPHO1 (ENSNVIG00000006507) #10	ABI3 (ENSNVIG00000006479) #11	GNGT2 (ENSNVIG00000006461) #12	B4GALNT2 (ENSNVIG00000006432) #13	IGF2BP1 (ENSNVIG00000006377) #14	GIP (ENSNVIG00000006361) #15	ENSNVIG00000006352 #16	ENSNVIG00000006339	UBE2Z (ENSNVIG00000006316) #17	ENSNVIG00000006295 #18	CALCOCO2 (ENSNVIG00000006167) #19	TTLL6 (ENSNVIG00000006132) #20	HOXB13 (ENSNVIG00000006117) #21	HOXB9 (ENSNVIG00000006082) #22	HOXB8 (ENSNVIG00000006066) #23	HOXB7 (ENSNVIG00000006060) #24	HOXB6 (ENSNVIG00000006053) #25	HOXB5 (ENSNVIG00000006049) #26	HOXB4 (ENSNVIG00000006040) #27	HOXB3 (ENSNVIG00000006032) #28	HOXB2 (ENSNVIG00000006024) #29	HOXB1 (ENSNVIG00000006017) #30	ENSNVIG00000006009	SKAP1 (ENSNVIG00000005974) #31	SNX11 (ENSNVIG00000005959) #32	CBX1 (ENSNVIG00000005946) #33	NFE2L1 (ENSNVIG00000005857) #35	ENSNVIG00000005842	COPZ2 (ENSNVIG00000005837) #36
Ferret	MODERN SPECIES	270	ENSMPUG00000015387	NGFR (ENSMPUG00000015384)	PHB1 (ENSMPUG00000015381) #7	ZNF652 (ENSMPUG00000015376) #8	PHOSPHO1 (ENSMPUG00000015375) #10	ABI3 (ENSMPUG00000015374) #11	B4GALNT2 (ENSMPUG00000015373) #13	IGF2BP1 (ENSMPUG00000015358) #14	GIP (ENSMPUG00000015357) #15	SNF8 (ENSMPUG00000015356) #16	UBE2Z (ENSMPUG00000015342) #17	ENSMPUG00000015341 #18	CALCOCO2 (ENSMPUG00000015338) #19	TTLL6 (ENSMPUG00000015335) #20	HOXB13 (ENSMPUG00000015332) #21	HOXB9 (ENSMPUG00000015330) #22	HOXB8 (ENSMPUG00000015329) #23	HOXB7 (ENSMPUG00000015328) #24	HOXB6 (ENSMPUG00000015322) #25	HOXB5 (ENSMPUG00000015316) #26	HOXB4 (ENSMPUG00000015310) #27	HOXB2 (ENSMPUG00000015309) #29	HOXB1 (ENSMPUG00000015307) #30	SKAP1 (ENSMPUG00000015305) #31	SNX11 (ENSMPUG00000015303) #32	CBX1 (ENSMPUG00000015302) ##33	NFE2L1 (ENSMPUG00000015301) #35	COPZ2 (ENSMPUG00000015292) #36	CDK5RAP3 (ENSMPUG00000015291) #37	PRR15L (ENSMPUG00000020087)	PNPO (ENSMPUG00000015290)
Felidae	ANCESTRAL SPECIES	8	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.f.a #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000013771.p	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00950000185410	ENSGT00390000004405.b #36
Panthera	ANCESTRAL SPECIES	14	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.f.a #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000013771.p	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00950000185410	ENSGT00390000004405.b #36
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.f.a #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000013771.p	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00940000154534.a
leopard	MODERN SPECIES	67	NGFR (ENSPPRG00000013448)	PHB1 (ENSPPRG00000012902) #7	ZNF652 (ENSPPRG00000011680) #8	PHOSPHO1 (ENSPPRG00000010125) #10	ABI3 (ENSPPRG00000009966) #11	GNGT2 (ENSPPRG00000009442) #12	B4GALNT2 (ENSPPRG00000008636) #13	IGF2BP1 (ENSPPRG00000008067) #14	GIP (ENSPPRG00000007119) #15	ENSPPRG00000007008 #16	UBE2Z (ENSPPRG00000005626) #17	ENSPPRG00000005588 #18	CALCOCO2 (ENSPPRG00000004550) #19	TTLL6 (ENSPPRG00000003004) #20	HOXB13 (ENSPPRG00000001633) #21	HOXB9 (ENSPPRG00000001578) #22	HOXB8 (ENSPPRG00000001156) #23	HOXB7 (ENSPPRG00000000666) #24	HOXB6 (ENSPPRG00000000532) #25	HOXB5 (ENSPPRG00000000333) #26	HOXB4 (ENSPPRG00000000220) #27	HOXB3 (ENSPPRG00000022415) #28	HOXB2 (ENSPPRG00000020926) #29	HOXB1 (ENSPPRG00000017656) #30	ENSPPRG00000017115	ENSPPRG00000016613	SKAP1 (ENSPPRG00000015336) #31	SNX11 (ENSPPRG00000012061) #32	CBX1 (ENSPPRG00000009475) #33	NFE2L1 (ENSPPRG00000009101) #35	COPZ2 (ENSPPRG00000006801) #36
lion	MODERN SPECIES	14	PHB1 (ENSPLOG00000020854) #7	ZNF652 (ENSPLOG00000020894) #8	PHOSPHO1 (ENSPLOG00000020920) #10	ABI3 (ENSPLOG00000020951) #11	GNGT2 (ENSPLOG00000020997) #12	B4GALNT2 (ENSPLOG00000021030) #13	IGF2BP1 (ENSPLOG00000021207) #14	GIP (ENSPLOG00000021311) #15	SNF8 (ENSPLOG00000021370) #16	UBE2Z (ENSPLOG00000021399) #17	ENSPLOG00000021422 #18	CALCOCO2 (ENSPLOG00000021469) #19	TTLL6 (ENSPLOG00000021506) #20	HOXB13 (ENSPLOG00000021590) #21	ENSPLOG00000021606	HOXB9 (ENSPLOG00000021630) #22	HOXB8 (ENSPLOG00000021645) #23	HOXB7 (ENSPLOG00000021659) #24	HOXB6 (ENSPLOG00000021669) #25	HOXB5 (ENSPLOG00000021683) #26	HOXB4 (ENSPLOG00000021697) #27	HOXB3 (ENSPLOG00000021711) #28	HOXB2 (ENSPLOG00000021733) #29	HOXB1 (ENSPLOG00000021742) #30	ENSPLOG00000021761	SKAP1 (ENSPLOG00000021790) #31	SNX11 (ENSPLOG00000021872) #32	CBX1 (ENSPLOG00000021907) #33	NFE2L1 (ENSPLOG00000021931) #35	COPZ2 (ENSPLOG00000021972) #36	CDK5RAP3 (ENSPLOG00000022033) #37
Cat	MODERN SPECIES	245	NGFR (ENSFCAG00000046296)	PHB1 (ENSFCAG00000042904) #7	ZNF652 (ENSFCAG00000000115) #8	PHOSPHO1 (ENSFCAG00000000113) #10	ABI3 (ENSFCAG00000018571) #11	GNGT2 (ENSFCAG00000039268) #12	B4GALNT2 (ENSFCAG00000018523) #13	IGF2BP1 (ENSFCAG00000002454) #14	GIP (ENSFCAG00000008946) #15	SNF8 (ENSFCAG00000008944) #16	UBE2Z (ENSFCAG00000045462) #17	ENSFCAG00000002344 #18	CALCOCO2 (ENSFCAG00000010622) #19	TTLL6 (ENSFCAG00000010617) #20	HOXB13 (ENSFCAG00000002120) #21	HOXB9 (ENSFCAG00000035234) #22	HOXB8 (ENSFCAG00000036979) #23	HOXB7 (ENSFCAG00000002118) #24	HOXB6 (ENSFCAG00000034768) #25	HOXB5 (ENSFCAG00000039068) #26	HOXB4 (ENSFCAG00000051422) #27	HOXB3 (ENSFCAG00000006408) #28	HOXB2 (ENSFCAG00000045039) #29	HOXB1 (ENSFCAG00000028151) #30	ENSFCAG00000034133	SKAP1 (ENSFCAG00000004784) #31	SNX11 (ENSFCAG00000009371) #32	CBX1 (ENSFCAG00000006056) ##33	NFE2L1 (ENSFCAG00000009369) #35	COPZ2 (ENSFCAG00000034233) #36	CDK5RAP3 (ENSFCAG00000009367) #37
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.b #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Equus	ANCESTRAL SPECIES		ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.b #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Donkey	MODERN SPECIES	4	PHOSPHO1 (ENSEASG00005036161) #10	ABI3 (ENSEASG00005000248) #11	ENSEASG00005037167 #12	B4GALNT2 (ENSEASG00005000271) #13	IGF2BP1 (ENSEASG00005000301) #14	GIP (ENSEASG00005000385) #15	SNF8 (ENSEASG00005000402) #16	ENSEASG00005030756	UBE2Z (ENSEASG00005000404) #17	ENSEASG00005032484 #18	ENSEASG00005026420 #19	CALCOCO2 (ENSEASG00005000430) #19	ENSEASG00005037375 #20	ENSEASG00005000438 #20	HOXB13 (ENSEASG00005025083) #21	HOXB9 (ENSEASG00005000527) #22	HOXB8 (ENSEASG00005024978) #23	HOXB7 (ENSEASG00005000556) #24	HOXB5 (ENSEASG00005000563) #26	HOXB6 (ENSEASG00005000560) #25	HOXB3 (ENSEASG00005000581) #28	HOXB2 (ENSEASG00005000585) #29	HOXB1 (ENSEASG00005000594) #30	SKAP1 (ENSEASG00005000601) #31	SNX11 (ENSEASG00005000605) #32	CBX1 (ENSEASG00005000607) #33	NFE2L1 (ENSEASG00005000634) #35	COPZ2 (ENSEASG00005000641) #36	CDK5RAP3 (ENSEASG00005000658) #37	PRR15L (ENSEASG00005000660)	PNPO (ENSEASG00005028794)
Horse	MODERN SPECIES	2	ZNF652 (ENSECAG00000016968) #8	PHOSPHO1 (ENSECAG00000016583) #10	ABI3 (ENSECAG00000016070)	GNGT2 (ENSECAG00000016054) #12	B4GALNT2 (ENSECAG00000013354) #13	IGF2BP1 (ENSECAG00000009723) #14	GIP (ENSECAG00000008172) #15	ENSECAG00000046431	SNF8 (ENSECAG00000022092) #16	UBE2Z (ENSECAG00000021160) #17	ATP5MC1 (ENSECAG00000019908) #18	CALCOCO2 (ENSECAG00000015498) #19	ENSECAG00000059603 #20	TTLL6 (ENSECAG00000014417) #20	HOXB13 (ENSECAG00000013619) #21	HOXB9 (ENSECAG00000036001) #22	HOXB8 (ENSECAG00000034473) #24	HOXB5 (ENSECAG00000012439) #26	HOXB4 (ENSECAG00000028576) #27	HOXB3 (ENSECAG00000002707) #28	HOXB2 (ENSECAG00000012423) #29	HOXB1 (ENSECAG00000011628) #30	SKAP1 (ENSECAG00000010544) #31	SNX11 (ENSECAG00000008117) #32	CBX1 (ENSECAG00000008048) #33	NFE2L1 (ENSECAG00000007777) #35	COPZ2 (ENSECAG00000024471) #36	CDK5RAP3 (ENSECAG00000018688) #37	PRR15L (ENSECAG00000002658)	PNPO (ENSECAG00000014995)	SP2 (ENSECAG00000012859)
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.b #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Microchiroptera	ANCESTRAL SPECIES		ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000159720.b #18	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00980000199681	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37
Greater horseshoe bat	MODERN SPECIES	13	ZNF652 (ENSRFEG00010021620) #8	PHOSPHO1 (ENSRFEG00010021635) #10	ABI3 (ENSRFEG00010021659) #11	GNGT2 (ENSRFEG00010021682) #12	B4GALNT2 (ENSRFEG00010021694) #13	ENSRFEG00010021705	IGF2BP1 (ENSRFEG00010021720) #14	GIP (ENSRFEG00010021740) #15	SNF8 (ENSRFEG00010021745) #16	UBE2Z (ENSRFEG00010021755) #17	ENSRFEG00010021766 #18	CALCOCO2 (ENSRFEG00010021784) #19	ENSRFEG00010021798	TTLL6 (ENSRFEG00010021801) #20	HOXB13 (ENSRFEG00010021808) #21	HOXB9 (ENSRFEG00010021814) #22	HOXB8 (ENSRFEG00010021818) #23	HOXB7 (ENSRFEG00010021823) #24	HOXB6 (ENSRFEG00010021831) #25	HOXB5 (ENSRFEG00010021836) #26	HOXB4 (ENSRFEG00010021844) #27	ENSRFEG00010021849	HOXB3 (ENSRFEG00010021853) #28	HOXB2 (ENSRFEG00010021859) #29	HOXB1 (ENSRFEG00010021864) #30	SKAP1 (ENSRFEG00010021866) #31	SNX11 (ENSRFEG00010021879) #32	CBX1 (ENSRFEG00010021893) #33	NFE2L1 (ENSRFEG00010021900) #35	COPZ2 (ENSRFEG00010021918) #36	CDK5RAP3 (ENSRFEG00010021928) #37
Microbat	MODERN SPECIES	1191	PHB1 (ENSMLUG00000008203) #7	ZNF652 (ENSMLUG00000012963) #8	ENSMLUG00000005756 #10	ABI3 (ENSMLUG00000012953) #11	GNGT2 (ENSMLUG00000012951) #12	ENSMLUG00000024310	B4GALNT2 (ENSMLUG00000012945) #13	ENSMLUG00000016891 #14	GIP (ENSMLUG00000011785) #15	SNF8 (ENSMLUG00000011769) #16	UBE2Z (ENSMLUG00000011750) #17	ENSMLUG00000011738 #18	CALCOCO2 (ENSMLUG00000014073) #19	TTLL6 (ENSMLUG00000014065) #20	ENSMLUG00000029480 #21	HOXB9 (ENSMLUG00000011677) #22	HOXB7 (ENSMLUG00000002609) #24	HOXB6 (ENSMLUG00000010649) #25	ENSMLUG00000014513 #26	ENSMLUG00000027291	HOXB3 (ENSMLUG00000008445) #28	HOXB1 (ENSMLUG00000008429) #30	SKAP1 (ENSMLUG00000005037) #31	SNX11 (ENSMLUG00000005033) #32	CBX1 (ENSMLUG00000005030) #33	NFE2L1 (ENSMLUG00000005024) #35	CDK5RAP3 (ENSMLUG00000005014) #37	PRR15L (ENSMLUG00000005012)	PNPO (ENSMLUG00000005003)	SP2 (ENSMLUG00000005000)	SCRN2 (ENSMLUG00000006417)
Atlantogenata	ANCESTRAL SPECIES	1	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Xenarthra	ANCESTRAL SPECIES	257		ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22
Armadillo	MODERN SPECIES	1251		NGFR (ENSDNOG00000043405)	PHB1 (ENSDNOG00000038770) #7	ZNF652 (ENSDNOG00000016747) #8	PHOSPHO1 (ENSDNOG00000018968) #10	ABI3 (ENSDNOG00000023604) #11	B4GALNT2 (ENSDNOG00000040157) #13	IGF2BP1 (ENSDNOG00000006801) #14	GIP (ENSDNOG00000006792) #15	SNF8 (ENSDNOG00000002745) #16	UBE2Z (ENSDNOG00000002744) #17	ATP5MC1 (ENSDNOG00000011376)	ENSDNOG00000016284 #19	TTLL6 (ENSDNOG00000013498) #20	HOXB13 (ENSDNOG00000015177) #21	HOXB9 (ENSDNOG00000024386) #22
Afrotheria	ANCESTRAL SPECIES	2	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Afrotheria_a	ANCESTRAL SPECIES	2	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Elephant	MODERN SPECIES	310	ZNF652 (ENSLAFG00000010084) #8	PHOSPHO1 (ENSLAFG00000031084) #10	ABI3 (ENSLAFG00000001493) #11	GNGT2 (ENSLAFG00000025568) #12	B4GALNT2 (ENSLAFG00000010563) #13	IGF2BP1 (ENSLAFG00000002048) #14	GIP (ENSLAFG00000004536) #15	SNF8 (ENSLAFG00000006599) #16	UBE2Z (ENSLAFG00000006606) #17	ATP5MC1 (ENSLAFG00000004537)	CALCOCO2 (ENSLAFG00000016693) #19	ENSLAFG00000027009	TTLL6 (ENSLAFG00000003368) #20	ENSLAFG00000026602	HOXB13 (ENSLAFG00000011262) #21	HOXB9 (ENSLAFG00000013600) #22	HOXB8 (ENSLAFG00000030682) #23	HOXB7 (ENSLAFG00000030637) #24	HOXB6 (ENSLAFG00000013593) #25	HOXB5 (ENSLAFG00000013590) #26	HOXB4 (ENSLAFG00000013588) #27	HOXB3 (ENSLAFG00000030335) #28	ENSLAFG00000030505	HOXB2 (ENSLAFG00000030161) #29	ENSLAFG00000031610 #30	SKAP1 (ENSLAFG00000018530) #31	SNX11 (ENSLAFG00000018529) #32	CBX1 (ENSLAFG00000018526) #33	NFE2L1 (ENSLAFG00000018523) #35	ENSLAFG00000015209 #36	ENSLAFG00000030284
Hyrax	MODERN SPECIES	6172																HOXB9 (ENSPCAG00000006263) #22	HOXB7 (ENSPCAG00000006250) #24	HOXB6 (ENSPCAG00000006197) #25	HOXB5 (ENSPCAG00000006172) #26	ENSPCAG00000006141
Tenrec	MODERN SPECIES	17485																HOXB9 (ENSETEG00000007854) #22
Marsupialia	ANCESTRAL SPECIES	13	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Marsupialia_b	ANCESTRAL SPECIES	16	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Diprotodontia	ANCESTRAL SPECIES	9	ENSGT00950000182883.a.a	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b.b #13	ENSGT00940000160427 #14	ENSGT00390000007843 #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Diprotodontia_a	ANCESTRAL SPECIES	11	ENSGT00950000182883.a.a	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b.b #13	ENSGT00940000160427 #14	ENSGT00390000007843 #16	ENSGT00940000159091.e #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Common wonbat	MODERN SPECIES	1037	SLC35B1 (ENSVURG00010007896)	SPOP (ENSVURG00010007867)	NXPH3 (ENSVURG00010007859)	NGFR (ENSVURG00010007851)	PHB1 (ENSVURG00010007822) #7	ZNF652 (ENSVURG00010007816) #8	PHOSPHO1 (ENSVURG00010007795) #10	ABI3 (ENSVURG00010007788) #11	GNGT2 (ENSVURG00010007781) #12	B4GALNT2 (ENSVURG00010007761) #13	IGF2BP1 (ENSVURG00010007702) #14	SNF8 (ENSVURG00010007691) #16	ENSVURG00010007663 #17	CALCOCO2 (ENSVURG00010007642) #19	HOXB13 (ENSVURG00010007629) #21	HOXB9 (ENSVURG00010007619) #22	HOXB8 (ENSVURG00010007609) #23	HOXB7 (ENSVURG00010007606) #24	HOXB6 (ENSVURG00010007602) #25	HOXB5 (ENSVURG00010007599) #26	HOXB4 (ENSVURG00010007589) #27	HOXB3 (ENSVURG00010007587) #28	HOXB2 (ENSVURG00010007579) #29	HOXB1 (ENSVURG00010007572) #30	SKAP1 (ENSVURG00010007559) #31	SNX11 (ENSVURG00010007541) #32	CBX1 (ENSVURG00010007537) #33	NFE2L1 (ENSVURG00010007465) #35	COPZ2 (ENSVURG00010007430) #36	CDK5RAP3 (ENSVURG00010007403) #37	PRR15L (ENSVURG00010007394)
koala	MODERN SPECIES	67	NGFR (ENSPCIG00000014398)	PHB1 (ENSPCIG00000013104) #7	ZNF652 (ENSPCIG00000013105) #8	ENSPCIG00000013106	PHOSPHO1 (ENSPCIG00000013107) #10	ABI3 (ENSPCIG00000013108) #11	GNGT2 (ENSPCIG00000013109) #12	B4GALNT2 (ENSPCIG00000003606) #13	IGF2BP1 (ENSPCIG00000013111) #14	SNF8 (ENSPCIG00000013302) #16	ENSPCIG00000013305 #17	ATP5MC1 (ENSPCIG00000013306)	CALCOCO2 (ENSPCIG00000010432) #19	TTLL6 (ENSPCIG00000030247) #20	HOXB13 (ENSPCIG00000030249) #21	HOXB9 (ENSPCIG00000030251) #22	HOXB7 (ENSPCIG00000000064) #24	HOXB6 (ENSPCIG00000000076) #25	HOXB5 (ENSPCIG00000031080) #26	HOXB4 (ENSPCIG00000000195) #27	HOXB3 (ENSPCIG00000000217) #28	HOXB2 (ENSPCIG00000000295) #29	HOXB1 (ENSPCIG00000033449) #30	SKAP1 (ENSPCIG00000000339) #31	SNX11 (ENSPCIG00000000612) #32	CBX1 (ENSPCIG00000000630) #33	NFE2L1 (ENSPCIG00000000720) #35	COPZ2 (ENSPCIG00000000757) #36	CDK5RAP3 (ENSPCIG00000000798) #37	PRR15L (ENSPCIG00000000814)	PNPO (ENSPCIG00000000828)
Tasmanian devil	MODERN SPECIES	3	NXPH3 (ENSSHAG00000007677)	NGFR (ENSSHAG00000006168)	PHB1 (ENSSHAG00000025219) #7	PHOSPHO1 (ENSSHAG00000020969) #10	ABI3 (ENSSHAG00000023845) #11	ENSSHAG00000014937 #13	ENSSHAG00000014639 #13	IGF2BP1 (ENSSHAG00000014259) #14	ENSSHAG00000014119 #15	SNF8 (ENSSHAG00000013985) #16	UBE2Z (ENSSHAG00000020994) #17	ATP5MC1 (ENSSHAG00000013859)	CALCOCO2 (ENSSHAG00000022264) #19	TTLL6 (ENSSHAG00000013396) #20	HOXB13 (ENSSHAG00000013189) #21	HOXB9 (ENSSHAG00000012684) #22	HOXB8 (ENSSHAG00000023021) #23	HOXB7 (ENSSHAG00000022783) #24	HOXB5 (ENSSHAG00000024100) #26	HOXB3 (ENSSHAG00000031207) #28	HOXB2 (ENSSHAG00000012232) #29	HOXB1 (ENSSHAG00000012150) #30	ENSSHAG00000029678	SNX11 (ENSSHAG00000029423) #32	CBX1 (ENSSHAG00000023789) #33	NFE2L1 (ENSSHAG00000026195) #35	COPZ2 (ENSSHAG00000023675) #36	CDK5RAP3 (ENSSHAG00000006548) #37	PRR15L (ENSSHAG00000025985)	PNPO (ENSSHAG00000023730)	ENSSHAG00000005930
Opossum	MODERN SPECIES	1	ZNF652 (ENSMODG00000012215) #8	PHOSPHO1 (ENSMODG00000012217) #10	ABI3 (ENSMODG00000012233) #11	GNGT2 (ENSMODG00000048984) #12	B4GALNT2 (ENSMODG00000012242) #13	ENSMODG00000047325	IGF2BP1 (ENSMODG00000012268) #14	ENSMODG00000028269 #15	SNF8 (ENSMODG00000012276) #16	UBE2Z (ENSMODG00000046619) #17	ENSMODG00000012296 #18	ENSMODG00000029509 #19	ENSMODG00000012306 #19	ENSMODG00000025670 #20	HOXB13 (ENSMODG00000012310) #21	HOXB9 (ENSMODG00000012329) #22	HOXB7 (ENSMODG00000044053) #24	HOXB6 (ENSMODG00000012334) #25	HOXB5 (ENSMODG00000012338) #26	HOXB4 (ENSMODG00000042083) #27	HOXB3 (ENSMODG00000012344) #28	HOXB2 (ENSMODG00000012347) #29	HOXB1 (ENSMODG00000046816) #30	SKAP1 (ENSMODG00000012360) #31	SNX11 (ENSMODG00000051179) #32	CBX1 (ENSMODG00000012368) #33	NFE2L1 (ENSMODG00000012375) #35	COPZ2 (ENSMODG00000012424) #36	CDK5RAP3 (ENSMODG00000012439) #37	PRR15L (ENSMODG00000024090)	PNPO (ENSMODG00000012446)
Platypus	MODERN SPECIES	2	ENSOANG00000043058	NGFR (ENSOANG00000000447)	PHB1 (ENSOANG00000003080) #7	ZNF652 (ENSOANG00000039038) #8	PHOSPHO1 (ENSOANG00000042855) #10	ABI3 (ENSOANG00000050932) #11	GNGT2 (ENSOANG00000037597) #12	B4GALNT2 (ENSOANG00000042946) #13	IGF2BP1 (ENSOANG00000014859) #14	SNF8 (ENSOANG00000050758) #16	UBE2Z (ENSOANG00000042370) #17	ATP5MC1 (ENSOANG00000049234)	ENSOANG00000021387 #19	ENSOANG00000007312 #20	HOXB13 (ENSOANG00000007689) #21	HOXB9 (ENSOANG00000005338) #22	HOXB8 (ENSOANG00000047281) #23	HOXB7 (ENSOANG00000051269) #24	HOXB6 (ENSOANG00000050952) #25	HOXB5 (ENSOANG00000051056) #26	HOXB4 (ENSOANG00000042426) #27	HOXB3 (ENSOANG00000039840) #28	HOXB2 (ENSOANG00000041050) #29	HOXB1 (ENSOANG00000010307) #30	ENSOANG00000044458	SKAP1 (ENSOANG00000010840) #31	ENSOANG00000039817 #32	CBX1 (ENSOANG00000049057) #33	NFE2L1 (ENSOANG00000043783) #35	ENSOANG00000048116 #37	PRR15L (ENSOANG00000013452)
Sauria	ANCESTRAL SPECIES	26	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Archelosauria	ANCESTRAL SPECIES	21	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Cryptodira	ANCESTRAL SPECIES	23	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Testudinoidea	ANCESTRAL SPECIES	19	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Emydidae	ANCESTRAL SPECIES	26	ENSGT00730000110974	ENSGT01100000264939	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Three-toed box turtle	MODERN SPECIES	91	NGFR (ENSTMTG00000008039)	ENSTMTG00000008034	PHB1 (ENSTMTG00000008017) #7	ZNF652 (ENSTMTG00000008012) #8	PHOSPHO1 (ENSTMTG00000008002) #10	ABI3 (ENSTMTG00000007978) #11	GNGT2 (ENSTMTG00000007963) #12	IGF2BP1 (ENSTMTG00000007859) #14	GIP (ENSTMTG00000007840) #15	SNF8 (ENSTMTG00000007821) #16	UBE2Z (ENSTMTG00000007812) #17	ATP5MC1 (ENSTMTG00000007797)	CALCOCO2 (ENSTMTG00000007745) #19	ENSTMTG00000007723 #20	HOXB13 (ENSTMTG00000007711) #21	HOXB9 (ENSTMTG00000007702) #22	HOXB8 (ENSTMTG00000007693) #23	HOXB7 (ENSTMTG00000007684) #24	HOXB6 (ENSTMTG00000007672) #25	HOXB5 (ENSTMTG00000007666) #26	HOXB4 (ENSTMTG00000007660) #27	HOXB3 (ENSTMTG00000007653) #28	HOXB2 (ENSTMTG00000007640) #29	HOXB1 (ENSTMTG00000007622) #30	SKAP1 (ENSTMTG00000007393) #31	SNX11 (ENSTMTG00000007347) #32	CBX1 (ENSTMTG00000007333) #33	NFE2L1 (ENSTMTG00000007320) #35	COPZ2 (ENSTMTG00000007271) #36	CDK5RAP3 (ENSTMTG00000007229) #37	PRR15L (ENSTMTG00000007217)
painted turtle	MODERN SPECIES	2394	NGFR (ENSCPBG00000027292)	ENSCPBG00000027294	PHB1 (ENSCPBG00000027296) #7	ZNF652 (ENSCPBG00000027302) #8	PHOSPHO1 (ENSCPBG00000027305) #10	ABI3 (ENSCPBG00000027308) #11	GNGT2 (ENSCPBG00000027311) #12	IGF2BP1 (ENSCPBG00000027315) #14	GIP (ENSCPBG00000027322) #15	SNF8 (ENSCPBG00000027324) #16	UBE2Z (ENSCPBG00000027326) #17	ATP5MC1 (ENSCPBG00000027327)	CALCOCO2 (ENSCPBG00000027328) #19	TTLL6 (ENSCPBG00000027332) #20	HOXB13 (ENSCPBG00000027335) #21	HOXB9 (ENSCPBG00000027339) #22	HOXB8 (ENSCPBG00000027340) #23	HOXB7 (ENSCPBG00000027341) #24	HOXB3 (ENSCPBG00000027344) #28	HOXB6 (ENSCPBG00000027348) #25	HOXB5 (ENSCPBG00000027349) #26	ENSCPBG00000027351	HOXB2 (ENSCPBG00000027352) #29	HOXB1 (ENSCPBG00000027354) #30	SKAP1 (ENSCPBG00000027357) #31	SNX11 (ENSCPBG00000027362) #32	CBX1 (ENSCPBG00000027366) #33	NFE2L1 (ENSCPBG00000027369) #35	COPZ2 (ENSCPBG00000027373) #36	CDK5RAP3 (ENSCPBG00000027376) #37	PRR15L (ENSCPBG00000027380)
Testudinidae	ANCESTRAL SPECIES	24	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b.i #13	ENSGT00390000006679.b.j #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Goode s thornscrub tortoise	MODERN SPECIES	15	PHB1 (ENSGEVG00005011915) #7	ZNF652 (ENSGEVG00005018438) #8	PHOSPHO1 (ENSGEVG00005018428) #10	GNGT2 (ENSGEVG00005018400) #12	ABI3 (ENSGEVG00005018348) #11	ENSGEVG00005018310 #13	ENSGEVG00005018261 #13	IGF2BP1 (ENSGEVG00005018150) #14	ENSGEVG00005018109 #15	SNF8 (ENSGEVG00005018088) #16	UBE2Z (ENSGEVG00005018038) #17	ATP5MC1 (ENSGEVG00005018012)	CALCOCO2 (ENSGEVG00005017985) #19	ENSGEVG00005017952 #20	HOXB13 (ENSGEVG00005017930) #21	HOXB9 (ENSGEVG00005017896) #22	HOXB8 (ENSGEVG00005017871) #23	HOXB7 (ENSGEVG00005017847) #24	HOXB6 (ENSGEVG00005017822) #25	HOXB5 (ENSGEVG00005017800) #26	HOXB4 (ENSGEVG00005017783) #27	HOXB3 (ENSGEVG00005017763) #28	HOXB2 (ENSGEVG00005017753) #29	HOXB1 (ENSGEVG00005017735) #30	SKAP1 (ENSGEVG00005017712) #31	SNX11 (ENSGEVG00005017693) #32	CBX1 (ENSGEVG00005017682) #33	NFE2L1 (ENSGEVG00005017658) #35	COPZ2 (ENSGEVG00005017626) #36	CDK5RAP3 (ENSGEVG00005017600) #37	PRR15L (ENSGEVG00005017586)
Abingdon island giant tortoise	MODERN SPECIES	1609	PHB1 (ENSCABG00000003081) #7	ZNF652 (ENSCABG00000003079) #8	PHOSPHO1 (ENSCABG00000003074) #10	ENSCABG00000003068 #11	GNGT2 (ENSCABG00000003055) #12	ENSCABG00000002867 #13	ENSCABG00000002782 #13	IGF2BP1 (ENSCABG00000002771) #14	GIP (ENSCABG00000002769) #15	SNF8 (ENSCABG00000002767) #16	UBE2Z (ENSCABG00000002765) #17	ATP5MC1 (ENSCABG00000002763)	CALCOCO2 (ENSCABG00000002761) #19	TTLL6 (ENSCABG00000002759) #20	HOXB13 (ENSCABG00000002758) #21	HOXB9 (ENSCABG00000002754) #22	HOXB8 (ENSCABG00000002750) #23	HOXB7 (ENSCABG00000002742) #24	HOXB6 (ENSCABG00000002738) #25	HOXB5 (ENSCABG00000002737) #26	HOXB4 (ENSCABG00000002736) #27	HOXB3 (ENSCABG00000002733) #28	HOXB2 (ENSCABG00000002731) #29	HOXB1 (ENSCABG00000002728) #30	SKAP1 (ENSCABG00000002721) #31	SNX11 (ENSCABG00000002717) #32	CBX1 (ENSCABG00000002713) #33	NFE2L1 (ENSCABG00000002708) #35	COPZ2 (ENSCABG00000002681) #36	CDK5RAP3 (ENSCABG00000002680) #37	PRR15L (ENSCABG00000002679)
Chinese turtle	MODERN SPECIES	873	NXPH3 (ENSPSIG00000001781)	NGFR (ENSPSIG00000004515)	PHB1 (ENSPSIG00000004526) #7	ZNF652 (ENSPSIG00000004682) #8	PHOSPHO1 (ENSPSIG00000004701) #10	ABI3 (ENSPSIG00000004779) #11	GNGT2 (ENSPSIG00000004780) #12	B4GALNT2 (ENSPSIG00000004798) #13	IGF2BP1 (ENSPSIG00000005175) #14	ENSPSIG00000005451 #15	SNF8 (ENSPSIG00000005459) #16	ENSPSIG00000005879 #18	CALCOCO2 (ENSPSIG00000006041) #19	ENSPSIG00000006373 #21	TTLL6 (ENSPSIG00000006379) #20	HOXB9 (ENSPSIG00000007113) #22	HOXB8 (ENSPSIG00000007118) #23	HOXB7 (ENSPSIG00000007133) #24	HOXB6 (ENSPSIG00000007278) #25	HOXB5 (ENSPSIG00000007287) #26	HOXB4 (ENSPSIG00000007302) #27	HOXB3 (ENSPSIG00000007309) #28	HOXB1 (ENSPSIG00000007311) #30	ENSPSIG00000001784	SKAP1 (ENSPSIG00000007314) #31	SNX11 (ENSPSIG00000007556) #32	CBX1 (ENSPSIG00000007751) #33	ENSPSIG00000007945 #35	COPZ2 (ENSPSIG00000008186) #36
Archosauria	ANCESTRAL SPECIES	20	ENSGT00950000182883.a.a	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Australian saltwater crocodile	MODERN SPECIES	60	NGFR (ENSCPRG00005007361)	PHB1 (ENSCPRG00005007358) #7	ZNF652 (ENSCPRG00005007345) #8	PHOSPHO1 (ENSCPRG00005007340) #10	GNGT2 (ENSCPRG00005007334) #12	ABI3 (ENSCPRG00005007322) #11	IGF2BP1 (ENSCPRG00005007311) #14	GIP (ENSCPRG00005007298) #15	SNF8 (ENSCPRG00005007296) #16	UBE2Z (ENSCPRG00005007294) #17	ATP5MC1 (ENSCPRG00005007292)	ENSCPRG00005007273 #19	TTLL6 (ENSCPRG00005007263) #20	ENSCPRG00005007261	HOXB13 (ENSCPRG00005007259) #21	HOXB9 (ENSCPRG00005007240) #22	HOXB8 (ENSCPRG00005007236) #23	HOXB7 (ENSCPRG00005007234) #24	HOXB6 (ENSCPRG00005007226) #25	HOXB5 (ENSCPRG00005007222) #26	HOXB4 (ENSCPRG00005007218) #27	HOXB3 (ENSCPRG00005007217) #28	HOXB2 (ENSCPRG00005007216) #29	HOXB1 (ENSCPRG00005007211) #30	SKAP1 (ENSCPRG00005007201) #31	SNX11 (ENSCPRG00005007185) #32	CBX1 (ENSCPRG00005007181) #33	NFE2L1 (ENSCPRG00005007178) #35	COPZ2 (ENSCPRG00005007172) #36	CDK5RAP3 (ENSCPRG00005007163) #37	PRR15L (ENSCPRG00005007160)
Aves	ANCESTRAL SPECIES	26	ENSGT00940000154376.b	ENSGT00950000182883.a.a	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
African ostrich	MODERN SPECIES	625								PHB1 (ENSSCUG00000008422) #7	ZNF652 (ENSSCUG00000008426) #8	GNGT2 (ENSSCUG00000008427) #12	IGF2BP1 (ENSSCUG00000008429) #14	GIP (ENSSCUG00000008435) #15	SNF8 (ENSSCUG00000008438) #16	UBE2Z (ENSSCUG00000008440) #17	CALCOCO2 (ENSSCUG00000008444) #19	HOXB9 (ENSSCUG00000008450) #22	HOXB8 (ENSSCUG00000008451) #23	HOXB7 (ENSSCUG00000008454) #24	HOXB5 (ENSSCUG00000008457) #26	HOXB4 (ENSSCUG00000008461) #27	HOXB3 (ENSSCUG00000008463) #28	HOXB2 (ENSSCUG00000008465) #29	HOXB1 (ENSSCUG00000008466) #30	SKAP1 (ENSSCUG00000008467) #31	SNX11 (ENSSCUG00000008468) #32	CBX1 (ENSSCUG00000008469) #33	NFE2L1 (ENSSCUG00000008470) #35	ENSSCUG00000008471 #37	ENSSCUG00000008472 #37	PRR15L (ENSSCUG00000008473)	PNPO (ENSSCUG00000008474)
Neognathae	ANCESTRAL SPECIES	23	ENSGT00940000154376.b	ENSGT00950000182883.a.a	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Galloanserae	ANCESTRAL SPECIES	23				ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Anatidae	ANCESTRAL SPECIES	70			ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Pink-footed goose	MODERN SPECIES	305				PHB1 (ENSABRG00000021477) #7	ZNF652 (ENSABRG00000021483) #8	PHOSPHO1 (ENSABRG00000021486) #10	ABI3 (ENSABRG00000021488) #11	GNGT2 (ENSABRG00000021492) #12	IGF2BP1 (ENSABRG00000000212) #14	GIP (ENSABRG00000000246) #15	SNF8 (ENSABRG00000000286) #16	UBE2Z (ENSABRG00000000335) #17	ATP5MC1 (ENSABRG00000000359)	CALCOCO2 (ENSABRG00000000383) #19	HOXB13 (ENSABRG00000000421) #21	HOXB9 (ENSABRG00000000456) #22	HOXB8 (ENSABRG00000000461) #23	HOXB7 (ENSABRG00000000473) #24	HOXB6 (ENSABRG00000000480) #25	HOXB5 (ENSABRG00000000485) #26	HOXB4 (ENSABRG00000000495) #27	HOXB3 (ENSABRG00000000506) #28	HOXB2 (ENSABRG00000000517) #29	HOXB1 (ENSABRG00000000522) #30	SKAP1 (ENSABRG00000000558) #31	SNX11 (ENSABRG00000000576) #32	CBX1 (ENSABRG00000000584) #33	NFE2L1 (ENSABRG00000000594) #35	ENSABRG00000000606 #36	CDK5RAP3 (ENSABRG00000000636) #37	PNPO (ENSABRG00000000676)
Duck	MODERN SPECIES	19	KAT7 (ENSAPLG00000006744)	FAM117A (ENSAPLG00000006920)	SLC35B1 (ENSAPLG00000020918)	SPOP (ENSAPLG00000007134)	ZNF652 (ENSAPLG00000012036) #8	PHOSPHO1 (ENSAPLG00000012201) #10	ENSAPLG00000021605 #11	ENSAPLG00000022532 #11	GNGT2 (ENSAPLG00000012604) #12	IGF2BP1 (ENSAPLG00000012620) #14	GIP (ENSAPLG00000013204) #15	SNF8 (ENSAPLG00000031118) #16	ENSAPLG00000013301 #18	ENSAPLG00000013396 #19	HOXB13 (ENSAPLG00000023394) #21	HOXB9 (ENSAPLG00000013604) #22	HOXB8 (ENSAPLG00000013614) #23	HOXB7 (ENSAPLG00000013643) #24	HOXB6 (ENSAPLG00000013649) #25	HOXB5 (ENSAPLG00000013657) #26	HOXB4 (ENSAPLG00000013669) #27	HOXB3 (ENSAPLG00000018688) #28	HOXB2 (ENSAPLG00000022580) #29	HOXB1 (ENSAPLG00000018179) #30	SKAP1 (ENSAPLG00000007983) #31
Phasianidae	ANCESTRAL SPECIES	21	ENSGT00940000158142	ENSGT00940000155510	ENSGT00940000172611	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000000713 #37	ENSGT00940000154534.a	ENSGT00390000011219
Phasianidae_b	ANCESTRAL SPECIES	21	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00940000155510	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000000713 #37	ENSGT00940000154534.a	ENSGT00390000011219
Chicken	MODERN SPECIES	19	MEOX1 (ENSGALG00010024300)	ETV4 (ENSGALG00010024333)	DHX8 (ENSGALG00010024362)	PHB1 (ENSGALG00010024398) #7	ZNF652 (ENSGALG00010024430) #8	PHOSPHO1 (ENSGALG00010024451) #10	ABI3 (ENSGALG00010024497) #11	GNGT2 (ENSGALG00010024500) #12	IGF2BP1 (ENSGALG00010024697) #14	GIP (ENSGALG00010026239) #15	SNF8 (ENSGALG00010026298) #16	UBE2Z (ENSGALG00010026856) #17	ATP5MC1 (ENSGALG00010026305)	ENSGALG00010026334 #19	HOXB13 (ENSGALG00010026052) #21	HOXB9 (ENSGALG00010026782) #22	ENSGALG00010023374 #23	HOXB8 (ENSGALG00010021446) #23	HOXB7 (ENSGALG00010023381) #24	HOXB6 (ENSGALG00010023383) #25	HOXB5 (ENSGALG00010023394) #26	HOXB4 (ENSGALG00010023415) #27	HOXB3 (ENSGALG00010023428) #28	HOXB2 (ENSGALG00010023438) #29	HOXB1 (ENSGALG00010023454) #30	SKAP1 (ENSGALG00010021479) #31	SNX11 (ENSGALG00010021554) #32	CBX1 (ENSGALG00010021565) #33	NFE2L1 (ENSGALG00010021583) #35	CDK5RAP3 (ENSGALG00010023706) #37	PRR15L (ENSGALG00010023722)
Turkey	MODERN SPECIES	350																ENSMGAG00000018851 #22
Japanese quail	MODERN SPECIES	19	ETV4 (ENSCJPG00005019343)	DHX8 (ENSCJPG00005019345)	ENSCJPG00005019346	PHB1 (ENSCJPG00005019348) #7	ZNF652 (ENSCJPG00005019351) #8	PHOSPHO1 (ENSCJPG00005019352) #10	ABI3 (ENSCJPG00005019354) #11	GNGT2 (ENSCJPG00005019355) #12	IGF2BP1 (ENSCJPG00005019356) #14	GIP (ENSCJPG00005019357) #15	SNF8 (ENSCJPG00005019359) #16	UBE2Z (ENSCJPG00005019360) #17	ENSCJPG00005019361 #18	ENSCJPG00005019362 #19	HOXB13 (ENSCJPG00005019363) #21	HOXB9 (ENSCJPG00005019365) #22	HOXB8 (ENSCJPG00005019366) #23	HOXB7 (ENSCJPG00005019367) #24	HOXB6 (ENSCJPG00005019368) #25	HOXB5 (ENSCJPG00005019369) #26	HOXB4 (ENSCJPG00005019371) #27	HOXB3 (ENSCJPG00005019372) #28	HOXB2 (ENSCJPG00005019373) #29	HOXB1 (ENSCJPG00005019374) #30	SKAP1 (ENSCJPG00005019375) #31	SNX11 (ENSCJPG00005019376) #32	CBX1 (ENSCJPG00005019377) #33	NFE2L1 (ENSCJPG00005019378) #35	CDK5RAP3 (ENSCJPG00005019379) #37	PRR15L (ENSCJPG00005019386)	SP2 (ENSCJPG00005019387)
Neognathae_b	ANCESTRAL SPECIES	23	ENSGT00940000154376.b	ENSGT00950000182883.a.a	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Neognathae_c	ANCESTRAL SPECIES	26	ENSGT00940000154376.b	ENSGT00950000182883.a.a	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000159720 #18	ENSGT00950000183025.a #19	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Golden eagle	MODERN SPECIES	24	SPOP (ENSACCG00020006096)	NXPH3 (ENSACCG00020006088)	NGFR (ENSACCG00020006079)	PHB1 (ENSACCG00020006063) #7	ZNF652 (ENSACCG00020006049) #8	PHOSPHO1 (ENSACCG00020006039) #10	ABI3 (ENSACCG00020006027) #11	GNGT2 (ENSACCG00020006019) #12	IGF2BP1 (ENSACCG00020006001) #14	GIP (ENSACCG00020005975) #15	SNF8 (ENSACCG00020005957) #16	UBE2Z (ENSACCG00020005940) #17	ENSACCG00020005924 #18	CALCOCO2 (ENSACCG00020005903) #19	HOXB13 (ENSACCG00020005876) #21	HOXB9 (ENSACCG00020005856) #22	HOXB8 (ENSACCG00020005840) #23	HOXB7 (ENSACCG00020005829) #24	HOXB6 (ENSACCG00020005822) #25	HOXB5 (ENSACCG00020005810) #26	HOXB4 (ENSACCG00020005789) #27	HOXB3 (ENSACCG00020005780) #28	HOXB2 (ENSACCG00020005767) #29	HOXB1 (ENSACCG00020005760) #30	ENSACCG00020005744	SKAP1 (ENSACCG00020005684) #31	SNX11 (ENSACCG00020005654) #32	CBX1 (ENSACCG00020005635) #33	NFE2L1 (ENSACCG00020005624) #35	ENSACCG00020005600	CDK5RAP3 (ENSACCG00020005558) #37
Kakapo	MODERN SPECIES	12	ENSSHBG00005014406	NXPH3 (ENSSHBG00005014412)	NGFR (ENSSHBG00005014418)	PHB1 (ENSSHBG00005014430) #7	ZNF652 (ENSSHBG00005014438) #8	PHOSPHO1 (ENSSHBG00005014444) #10	ABI3 (ENSSHBG00005014450) #11	GNGT2 (ENSSHBG00005014459) #12	IGF2BP1 (ENSSHBG00005014472) #14	GIP (ENSSHBG00005014482) #15	SNF8 (ENSSHBG00005014495) #16	UBE2Z (ENSSHBG00005014518) #17	ENSSHBG00005014527 #18	ENSSHBG00005014537 #19	HOXB13 (ENSSHBG00005014551) #21	HOXB9 (ENSSHBG00005014566) #22	HOXB8 (ENSSHBG00005014570) #23	HOXB7 (ENSSHBG00005014576) #24	HOXB5 (ENSSHBG00005014586) #26	HOXB6 (ENSSHBG00005014592) #25	ENSSHBG00005014606	HOXB3 (ENSSHBG00005014612) #28	HOXB2 (ENSSHBG00005014624) #29	HOXB1 (ENSSHBG00005014632) #30	SKAP1 (ENSSHBG00005014653) #31	ENSSHBG00005014697 #32	CBX1 (ENSSHBG00005014707) #33	NFE2L1 (ENSSHBG00005014718) #35	COPZ2 (ENSSHBG00005014730) #36	JUP (ENSSHBG00005014758)	P3H4 (ENSSHBG00005014770)
Passeriformes	ANCESTRAL SPECIES	29																ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000158988.a.b	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000000713 #37	ENSGT00390000011219	ENSGT00940000159590
Great tit	MODERN SPECIES	20	DCAF7 (ENSPMJG00000017617)	MAP3K3 (ENSPMJG00000017620)	LIMD2 (ENSPMJG00000017621)	ENSPMJG00000017623	STRADA (ENSPMJG00000017624)	CCDC47 (ENSPMJG00000017669)	DDX42 (ENSPMJG00000017670)	ENSPMJG00000017671	ENSPMJG00000017672	CDC27 (ENSPMJG00000017673)	KANSL1 (ENSPMJG00000017676)	MAPT (ENSPMJG00000017677)	SLC25A39 (ENSPMJG00000017678)	SLC4A1 (ENSPMJG00000017680)	UBTF (ENSPMJG00000017681)	HOXB9 (ENSPMJG00000017682) #22	HOXB7 (ENSPMJG00000017683) #24	HOXB5 (ENSPMJG00000017684) #26	KPNB1 (ENSPMJG00000017685)	NPEPPS (ENSPMJG00000017741)	ENSPMJG00000017756	ENSPMJG00000017757	ENSPMJG00000017758	CACNB1 (ENSPMJG00000017759)	RPL19 (ENSPMJG00000017760)	ENSPMJG00000017761	FBXL20 (ENSPMJG00000017762)	MED1 (ENSPMJG00000017905)	CDK12 (ENSPMJG00000017906)	NEUROD2 (ENSPMJG00000017908)	PPP1R1B (ENSPMJG00000017909)
Passeriformes_d	ANCESTRAL SPECIES	25																ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000158988.a.b	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000000713 #37	ENSGT00390000011219	ENSGT00940000159590	ENSGT00940000161498
Flycatcher	MODERN SPECIES	203																ENSFALG00000014109 #22
Passeriformes_g	ANCESTRAL SPECIES	50																ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000158988.a.b	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000000713 #37	ENSGT00390000011219	ENSGT00940000159590	ENSGT00940000161498
Medium ground finch	MODERN SPECIES	355																HOXB9 (ENSGFOG00000006874) #22	HOXB8 (ENSGFOG00000006868) #23	HOXB7 (ENSGFOG00000006860) #24	HOXB5 (ENSGFOG00000006853) #26	ENSGFOG00000006845	SKAP1 (ENSGFOG00000006834) #31	CBX1 (ENSGFOG00000006831) #33	NFE2L1 (ENSGFOG00000006827) #35
Passeroidea	ANCESTRAL SPECIES	49																ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000158988.a.b	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d #33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000000713 #37	ENSGT00390000011219	ENSGT00940000159590	ENSGT00940000161498
Common canary	MODERN SPECIES	419																ENSSCAG00000000149 #22
Zebra finch	MODERN SPECIES	20	ENSTGUG00000019116	KAT7 (ENSTGUG00000001873)	SLC35B1 (ENSTGUG00000001866)	SPOP (ENSTGUG00000023775)	NXPH3 (ENSTGUG00000020057)	NGFR (ENSTGUG00000021536)	PHB1 (ENSTGUG00000003470) #7	ZNF652 (ENSTGUG00000003462) #8	PHOSPHO1 (ENSTGUG00000022673) #10	ABI3 (ENSTGUG00000027023) #11	IGF2BP1 (ENSTGUG00000016237) #14	ATP5MC1 (ENSTGUG00000026753)	UBE2Z (ENSTGUG00000027782) #17	ENSTGUG00000027404	ENSTGUG00000026217	HOXB9 (ENSTGUG00000003448) #22	HOXB8 (ENSTGUG00000003441) #23	ENSTGUG00000020107 #24	HOXB6 (ENSTGUG00000003435) #25	HOXB5 (ENSTGUG00000003430) #26	ENSTGUG00000021689	HOXB2 (ENSTGUG00000022054) #29	HOXB1 (ENSTGUG00000025694) #30	SKAP1 (ENSTGUG00000029482) #31	ENSTGUG00000026594 #32	NFE2L1 (ENSTGUG00000014715) #35	CDK5RAP3 (ENSTGUG00000016909) #37	PNPO (ENSTGUG00000027633)	SP2 (ENSTGUG00000024446)	SP6 (ENSTGUG00000027194)	SCRN2 (ENSTGUG00000021900)
Lepidosauria	ANCESTRAL SPECIES	23	ENSGT00730000110974	ENSGT00950000183070.a.b #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.c.a ##33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
tuatara	MODERN SPECIES	1118	PHB1 (ENSSPUG00000006915) #7	ZNF652 (ENSSPUG00000006896) #8	PHOSPHO1 (ENSSPUG00000006890) #10	ENSSPUG00000006883 #11	ENSSPUG00000006866 #11	GNGT2 (ENSSPUG00000006845) #12	ENSSPUG00000006744 #13	ENSSPUG00000006590 #13	IGF2BP1 (ENSSPUG00000006526) #14	ENSSPUG00000006512 #16	ENSSPUG00000006503	UBE2Z (ENSSPUG00000006500) #17	ENSSPUG00000006493 #18	ENSSPUG00000006484 #19	TTLL6 (ENSSPUG00000006396) #20	HOXB9 (ENSSPUG00000006346) #22	HOXB8 (ENSSPUG00000006333) #23	HOXB7 (ENSSPUG00000006323) #24	HOXB6 (ENSSPUG00000006308) #25	HOXB4 (ENSSPUG00000006280) #27	HOXB3 (ENSSPUG00000006266) #28	FLRT1 (ENSSPUG00000006188)	MACROD1 (ENSSPUG00000006177)	STIP1 (ENSSPUG00000006129)	FERMT3 (ENSSPUG00000005869)	NUDT22 (ENSSPUG00000005809)	DNAJC4 (ENSSPUG00000005787)	FKBP2 (ENSSPUG00000005764)	PPP1R14B (ENSSPUG00000005736)	PLCB3 (ENSSPUG00000005615)	ENSSPUG00000005596
Episquamata	ANCESTRAL SPECIES	5	ENSGT00950000183070.a.b.eb #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000165938	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.c.a ##33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00950000183070.a.b.eb #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000165938	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.c.a ##33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Elapidae	ANCESTRAL SPECIES	5	ENSGT00390000007741.a #10	ENSGT00940000161380.d.a #11	ENSGT00940000161380.c #11	ENSGT00940000161380.d.b #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000165938	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230.g #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.c.a ##33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Elapidae_a	ANCESTRAL SPECIES	19	ENSGT00950000183070.a.b.eb #7	ENSGT00940000157416.q #8	ENSGT00390000007741.a #10	ENSGT00940000161380.c #11	ENSGT00940000161380.d.b #11	ENSGT01100000263525.b.a #12	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000165938	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230.g #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.c.a ##33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Acanthophiinae	ANCESTRAL SPECIES	19	ENSGT00730000110974	ENSGT00950000183070.a.b.eb #7	ENSGT00940000157416.q #8	ENSGT00390000007741.a #10	ENSGT00940000161380.c #11	ENSGT01100000263525.b.a #12	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT01100000263641.a	ENSGT00960000191601	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529.g #23	ENSGT00940000161230.g #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.c.a ##33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Mainland tiger snake	MODERN SPECIES	29	ZNF652 (ENSNSUG00000007405) #8	PHOSPHO1 (ENSNSUG00000007407) #10	ABI3 (ENSNSUG00000007411) #11	GNGT2 (ENSNSUG00000007414) #12	IGF2BP1 (ENSNSUG00000007416) #14	ENSNSUG00000007425 #15	SNF8 (ENSNSUG00000007427) #16	UBE2Z (ENSNSUG00000007428) #17	ATP5MC1 (ENSNSUG00000007429)	ENSNSUG00000007431 #19	ENSNSUG00000007433	ENSNSUG00000007436	ENSNSUG00000007438	ENSNSUG00000007439 #20	HOXB13 (ENSNSUG00000007440) #21	HOXB9 (ENSNSUG00000007441) #22	ENSNSUG00000007442 #23	ENSNSUG00000007443 #24	HOXB6 (ENSNSUG00000007444) #25	HOXB5 (ENSNSUG00000007445) #26	HOXB4 (ENSNSUG00000007447) #27	HOXB3 (ENSNSUG00000007448) #28	HOXB2 (ENSNSUG00000007449) #29	HOXB1 (ENSNSUG00000007450) #30	SKAP1 (ENSNSUG00000007452) #31	SNX11 (ENSNSUG00000007454) #32	ENSNSUG00000007455 ##33	NFE2L1 (ENSNSUG00000007456) #35	COPZ2 (ENSNSUG00000007459) #36	CDK5RAP3 (ENSNSUG00000007503) #37	PRR15L (ENSNSUG00000007504)
Eastern brown snake	MODERN SPECIES	49	NXPH3 (ENSPTXG00000013865)	NGFR (ENSPTXG00000013867)	ENSPTXG00000013869 #7	ZNF652 (ENSPTXG00000013871) #8	PHOSPHO1 (ENSPTXG00000013872) #10	ABI3 (ENSPTXG00000013874) #11	ENSPTXG00000013875	IGF2BP1 (ENSPTXG00000013878) #14	SNF8 (ENSPTXG00000013881) #16	UBE2Z (ENSPTXG00000013882) #17	ATP5MC1 (ENSPTXG00000013884)	ENSPTXG00000013886 #19	ENSPTXG00000013887	ENSPTXG00000013890	HOXB13 (ENSPTXG00000013892) #21	HOXB9 (ENSPTXG00000013894) #22	ENSPTXG00000013896 #23	ENSPTXG00000013897 #24	HOXB6 (ENSPTXG00000013898) #25	HOXB5 (ENSPTXG00000013900) #26	HOXB4 (ENSPTXG00000013902) #27	HOXB3 (ENSPTXG00000013904) #28	HOXB2 (ENSPTXG00000013905) #29	HOXB1 (ENSPTXG00000013906) #30	ENSPTXG00000013907	SKAP1 (ENSPTXG00000013908) #31	SNX11 (ENSPTXG00000013909) #32	ENSPTXG00000013911 ##33	NFE2L1 (ENSPTXG00000013912) #35	COPZ2 (ENSPTXG00000013913) #36	CDK5RAP3 (ENSPTXG00000013914) #37
Blue-lipped sea krait	MODERN SPECIES	9907																HOXB9 (ENSLLTG00000013388) #22	HOXB8 (ENSLLTG00000013376) #23	HOXB7 (ENSLLTG00000013372) #24	HOXB6 (ENSLLTG00000013367) #25	HOXB5 (ENSLLTG00000013362) #26	HOXB4 (ENSLLTG00000013356) #27	HOXB3 (ENSLLTG00000013351) #28	HOXB2 (ENSLLTG00000013346) #29	HOXB1 (ENSLLTG00000013341) #30
Indian cobra	MODERN SPECIES	337	ENSNNAG00000009883 #7	ENSNNAG00000009859 #8	PHOSPHO1 (ENSNNAG00000009831) #10	ENSNNAG00000009817 #11	ENSNNAG00000009796 #11	GNGT2 (ENSNNAG00000009770) #12	B4GALNT2 (ENSNNAG00000009682) #13	IGF2BP1 (ENSNNAG00000009591) #14	SNF8 (ENSNNAG00000009568) #16	UBE2Z (ENSNNAG00000009539) #17	ATP5MC1 (ENSNNAG00000009523)	ENSNNAG00000009498 #19	ENSNNAG00000009486	ENSNNAG00000009471	HOXB13 (ENSNNAG00000009423) #21	HOXB9 (ENSNNAG00000009384) #22	HOXB8 (ENSNNAG00000009361) #23	HOXB7 (ENSNNAG00000009344) #24	HOXB6 (ENSNNAG00000009328) #25	HOXB5 (ENSNNAG00000009308) #26	HOXB4 (ENSNNAG00000009277) #27	HOXB3 (ENSNNAG00000009256) #28	HOXB2 (ENSNNAG00000009232) #29	HOXB1 (ENSNNAG00000009145) #30	SNX11 (ENSNNAG00000009074) #32	ENSNNAG00000009045 ##33	NFE2L1 (ENSNNAG00000009022) #35	COPZ2 (ENSNNAG00000008924) #36	CDK5RAP3 (ENSNNAG00000008878) #37	PRR15L (ENSNNAG00000008859)	PNPO (ENSNNAG00000008837)
Lizard	MODERN SPECIES	5	PHOSPHO1 (ENSACAG00000006108) #10	ENSACAG00000006110 #11	GNGT2 (ENSACAG00000041539) #12	ENSACAG00000041178	ENSACAG00000034571	ENSACAG00000006165 #13	IGF2BP1 (ENSACAG00000006199) #14	ENSACAG00000006291 #15	SNF8 (ENSACAG00000036858) #16	UBE2Z (ENSACAG00000006311) #17	ENSACAG00000042101	ATP5MC1 (ENSACAG00000035288)	ENSACAG00000006352 #19	ENSACAG00000035828	TTLL6 (ENSACAG00000006363) #20	HOXB9 (ENSACAG00000040887) #22	HOXB8 (ENSACAG00000036553) #23	HOXB7 (ENSACAG00000041279) #24	HOXB6 (ENSACAG00000034900) #25	HOXB5 (ENSACAG00000042998) #26	HOXB4 (ENSACAG00000006499) #27	HOXB3 (ENSACAG00000006508) #28	HOXB2 (ENSACAG00000006521) #29	HOXB1 (ENSACAG00000035547) #30	ENSACAG00000041448	ENSACAG00000034966	SKAP1 (ENSACAG00000006534) #31	SNX11 (ENSACAG00000006556) #32	ENSACAG00000006594 ##33	NFE2L1 (ENSACAG00000006615) #35	COPZ2 (ENSACAG00000006651) #36
Laterata	ANCESTRAL SPECIES	11	ENSGT00950000183070.a.b.eb #7	ENSGT00940000157416 #8	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #13	ENSGT00940000160427 #14	ENSGT00390000005121 #15	ENSGT00390000007843.cb #16	ENSGT00940000159091 #17	ENSGT00940000154298.a.b	ENSGT00950000183025.a #19	ENSGT00940000165938.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.c.a ##33	ENSGT00950000182892.a.b.a.a #35	ENSGT00390000004405.b #36	ENSGT00390000000713 #37	ENSGT00940000154534.a
Argentine black and white tegu	MODERN SPECIES	32	PHB1 (ENSSMRG00000021805) #7	ZNF652 (ENSSMRG00000021807) #8	PHOSPHO1 (ENSSMRG00000021809) #10	ABI3 (ENSSMRG00000021810) #11	GNGT2 (ENSSMRG00000021812) #12	B4GALNT2 (ENSSMRG00000021814) #13	IGF2BP1 (ENSSMRG00000021826) #14	SNF8 (ENSSMRG00000021827) #16	UBE2Z (ENSSMRG00000021828) #17	ENSSMRG00000021829 #18	CALCOCO2 (ENSSMRG00000021830) #19	ENSSMRG00000021831	ENSSMRG00000021832	ENSSMRG00000021833 #20	HOXB13 (ENSSMRG00000021834) #21	HOXB9 (ENSSMRG00000021835) #22	HOXB8 (ENSSMRG00000021836) #23	HOXB7 (ENSSMRG00000021837) #24	HOXB6 (ENSSMRG00000021838) #25	HOXB5 (ENSSMRG00000021839) #26	HOXB4 (ENSSMRG00000021841) #27	HOXB3 (ENSSMRG00000021842) #28	HOXB2 (ENSSMRG00000021844) #29	HOXB1 (ENSSMRG00000021845) #30	SKAP1 (ENSSMRG00000021847) #31	SNX11 (ENSSMRG00000021848) #32	CBX1 (ENSSMRG00000021849) ##33	NFE2L1 (ENSSMRG00000021850) #35	COPZ2 (ENSSMRG00000021851) #36	CDK5RAP3 (ENSSMRG00000021852) #37	PRR15L (ENSSMRG00000021853)
Common wall lizard	MODERN SPECIES	4	ZNF652 (ENSPMRG00000013044) #8	PHOSPHO1 (ENSPMRG00000013052) #10	ABI3 (ENSPMRG00000013058) #11	GNGT2 (ENSPMRG00000013069) #12	ENSPMRG00000013076 #13	IGF2BP1 (ENSPMRG00000013095) #14	ENSPMRG00000013106 #15	SNF8 (ENSPMRG00000013111) #16	UBE2Z (ENSPMRG00000013116) #17	ENSPMRG00000013122	ENSPMRG00000013127 #19	ENSPMRG00000013134	ENSPMRG00000013136	ENSPMRG00000013141	TTLL6 (ENSPMRG00000013146) #20	HOXB9 (ENSPMRG00000013158) #22	HOXB8 (ENSPMRG00000013160) #23	HOXB7 (ENSPMRG00000013164) #24	HOXB6 (ENSPMRG00000013165) #25	HOXB5 (ENSPMRG00000013170) #26	HOXB4 (ENSPMRG00000013173) #27	HOXB3 (ENSPMRG00000013178) #28	HOXB2 (ENSPMRG00000013183) #29	HOXB1 (ENSPMRG00000013189) #30	ENSPMRG00000013192	CBX1 (ENSPMRG00000013202) ##33	SNX11 (ENSPMRG00000013221) #32	NFE2L1 (ENSPMRG00000013246) #35	ENSPMRG00000013258	COPZ2 (ENSPMRG00000013275) #36	CDK5RAP3 (ENSPMRG00000013294) #37