Rodentia	ANCESTRAL SPECIES	4	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00990000209473	ENSGT00940000159091 #18	ENSGT00940000159720 #19	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36	ENSGT00940000154534.a #37
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000159720 #19	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36	ENSGT00940000154534.a #37
Myomorpha	ANCESTRAL SPECIES		ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000159720 #19	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36	ENSGT00940000154534.a #37
Lesser Egyptian jerboa	MODERN SPECIES	56	ENSJJAG00000009251 #7	ENSJJAG00000006327 #8	Zfp652 (ENSJJAG00000010496) #9	Phospho1 (ENSJJAG00000010499) #10	Abi3 (ENSJJAG00000002821) #11	Gngt2 (ENSJJAG00000002044) #12	ENSJJAG00000002566 #13	B4galnt2 (ENSJJAG00000006322) #14	Igf2bp1 (ENSJJAG00000002687) #15	Gip (ENSJJAG00000010688) #16	Snf8 (ENSJJAG00000006012) #17	ENSJJAG00000003530 #18	ENSJJAG00000010301 #19	Ttll6 (ENSJJAG00000010253) #20	Hoxb13 (ENSJJAG00000010401) #21	Hoxb9 (ENSJJAG00000009821) #22	Hoxb8 (ENSJJAG00000002398) #23	Hoxb7 (ENSJJAG00000001284) #24	Hoxb6 (ENSJJAG00000000997) #25	Hoxb5 (ENSJJAG00000000763) #26	Hoxb4 (ENSJJAG00000002642) #27	Hoxb3 (ENSJJAG00000007804) #28	Hoxb2 (ENSJJAG00000009465) #29	Hoxb1 (ENSJJAG00000001073) #30	Skap1 (ENSJJAG00000003458) #31	ENSJJAG00000005754 #32	ENSJJAG00000007753 #33	Nfe2l1 (ENSJJAG00000006432) #34	Copz2 (ENSJJAG00000001025) #35	ENSJJAG00000002511 #36	Prr15l (ENSJJAG00000006478) #37
Muroidea	ANCESTRAL SPECIES		ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000159720 #19	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36	ENSGT00940000154534.a #37
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000159720 #19	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36	ENSGT00940000154534.a #37
Cricetidae	ANCESTRAL SPECIES		ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000159720.`b.a.a #19	ENSGT00940000159720.ab #19	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.a.a ##33	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36
Cricetinae	ANCESTRAL SPECIES		ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000159720.`b.a.a #19	ENSGT00940000159720.`b.b #19	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.a.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36	ENSGT00940000154534.a #37
Chinese hamster chok1gshd	MODERN SPECIES	33	Phb (ENSCGRG00001008513) #7	Zfp652 (ENSCGRG00001018513) #9	Phospho1 (ENSCGRG00001009639) #10	Abi3 (ENSCGRG00001013274) #11	Gngt2 (ENSCGRG00001021265) #12	B4galnt2 (ENSCGRG00001014272) #14	ENSCGRG00001000282 #15	Gip (ENSCGRG00001021533) #16	Snf8 (ENSCGRG00001000737) #17	Ube2z (ENSCGRG00001019150) #18	ENSCGRG00001022606 #19	ENSCGRG00001010560	ENSCGRG00001011435	Ttll6 (ENSCGRG00001018398) #20	Hoxb13 (ENSCGRG00001015060) #21	Hoxb9 (ENSCGRG00001015314) #22	Hoxb8 (ENSCGRG00001020235) #23	Hoxb7 (ENSCGRG00001021590) #24	Hoxb6 (ENSCGRG00001015674) #25	Hoxb5 (ENSCGRG00001016167) #26	Hoxb4 (ENSCGRG00001022431) #27	Hoxb3 (ENSCGRG00001016667) #28	Hoxb2 (ENSCGRG00001017587) #29	Hoxb1 (ENSCGRG00001024619) #30	ENSCGRG00001023355 #31	ENSCGRG00001020759 #31	Snx11 (ENSCGRG00001022221) #32	Cbx1 (ENSCGRG00001014799) ##33	Nfe2l1 (ENSCGRG00001015287) #34	Copz2 (ENSCGRG00001014767) #35	Cdk5rap3 (ENSCGRG00001006966) #36
Golden Hamster	MODERN SPECIES	674	ENSMAUG00000008827	Nxph3 (ENSMAUG00000016785)	Ngfr (ENSMAUG00000019765)	Phb (ENSMAUG00000013028) #7	Zfp652 (ENSMAUG00000009337) #9	Phospho1 (ENSMAUG00000012074) #10	Abi3 (ENSMAUG00000021085) #11	Gngt2 (ENSMAUG00000019144) #12	B4galnt2 (ENSMAUG00000007916) #14	Gip (ENSMAUG00000009238) #16	Snf8 (ENSMAUG00000001857) #17	Ube2z (ENSMAUG00000007792) #18	ENSMAUG00000021751 #19	Ttll6 (ENSMAUG00000020973) #20	Hoxb13 (ENSMAUG00000008407) #21	Hoxb9 (ENSMAUG00000017720) #22	Hoxb8 (ENSMAUG00000012636) #23	Hoxb7 (ENSMAUG00000021297) #24	Hoxb6 (ENSMAUG00000021423) #25	Hoxb5 (ENSMAUG00000021419) #26	Hoxb4 (ENSMAUG00000009367) #27	Hoxb3 (ENSMAUG00000011251) #28	Hoxb2 (ENSMAUG00000021979) #29	Hoxb1 (ENSMAUG00000013237) #30	Skap1 (ENSMAUG00000022191) #31	Snx11 (ENSMAUG00000021528) #32	ENSMAUG00000003463 ##33	Nfe2l1 (ENSMAUG00000020456) #34	Copz2 (ENSMAUG00000010560) #35	Cdk5rap3 (ENSMAUG00000007991) #36	Pnpo (ENSMAUG00000021706)
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000159720.`b.a.a #19	ENSGT00940000159720.ab #19	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36	ENSGT00940000154534.a #37
Prairie vole	MODERN SPECIES	114									ENSMOCG00000004266	ENSMOCG00000021226 #16	Snf8 (ENSMOCG00000016684) #17	Ube2z (ENSMOCG00000018241) #18	ENSMOCG00000013163 #19	Ttll6 (ENSMOCG00000021089) #20	Hoxb13 (ENSMOCG00000021389) #21	Hoxb9 (ENSMOCG00000020312) #22	Hoxb8 (ENSMOCG00000018435) #23	Hoxb7 (ENSMOCG00000020820) #24	Hoxb6 (ENSMOCG00000020355) #25	Hoxb5 (ENSMOCG00000014523) #26	Hoxb4 (ENSMOCG00000022964) #27	Hoxb3 (ENSMOCG00000020739) #28	Hoxb2 (ENSMOCG00000014846) #29	Hoxb1 (ENSMOCG00000002452) #30	Skap1 (ENSMOCG00000018431) #31	Snx11 (ENSMOCG00000019303) #32	Cbx1 (ENSMOCG00000001520) ##33	Nfe2l1 (ENSMOCG00000016002) #34	Copz2 (ENSMOCG00000022427) #35	Cdk5rap3 (ENSMOCG00000019534) #36	Prr15l (ENSMOCG00000006695) #37
Northern American deer mouse	MODERN SPECIES	21	Phb (ENSPEMG00000021310) #7	Zfp652 (ENSPEMG00000020862) #9	Phospho1 (ENSPEMG00000026539) #10	Abi3 (ENSPEMG00000014242) #11	Gngt2 (ENSPEMG00000027491) #12	B4galnt2 (ENSPEMG00000020717) #14	Igf2bp1 (ENSPEMG00000021974) #15	Gip (ENSPEMG00000021184) #16	Snf8 (ENSPEMG00000022229) #17	Ube2z (ENSPEMG00000020953) #18	Atp5g1 (ENSPEMG00000020590) #19	ENSPEMG00000028729	ENSPEMG00000025676	Ttll6 (ENSPEMG00000021918) #20	Hoxb13 (ENSPEMG00000021511) #21	Hoxb9 (ENSPEMG00000027158) #22	Hoxb5 (ENSPEMG00000030101) #26	Hoxb4 (ENSPEMG00000029805) #27	Hoxb3 (ENSPEMG00000028692) #28	Hoxb2 (ENSPEMG00000029510) #29	Hoxb1 (ENSPEMG00000023977) #30	Skap1 (ENSPEMG00000000585) #31	ENSPEMG00000020286	Snx11 (ENSPEMG00000000381) #32	Cbx1 (ENSPEMG00000020976) ##33	Nfe2l1 (ENSPEMG00000010512) #34	Copz2 (ENSPEMG00000011137) #35	Cdk5rap3 (ENSPEMG00000020712) #36	ENSPEMG00000030963	Prr15l (ENSPEMG00000024436) #37	Pnpo (ENSPEMG00000025094)
Murinae	ANCESTRAL SPECIES	6	ENSGT00730000110974	ENSGT00950000183070.a.b.h.jb #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000159720 #19	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36	ENSGT00940000154534.a #37
Mus	ANCESTRAL SPECIES	2	ENSGT00950000183070.a.b.h.jb #7	ENSGT00860000136060	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000159720 #19	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36
Mus_A	ANCESTRAL SPECIES	2	ENSGT00950000183070.a.b.h.jb #7	ENSGT00860000136060	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000159720 #19	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36
Mus_B	ANCESTRAL SPECIES	2	ENSGT00950000183070.a.b.h.jb #7	ENSGT00860000136060	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000159720 #19	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36
Mus_C	ANCESTRAL SPECIES	3	ENSGT00950000183070.a.b.h.jb #7	ENSGT00860000136060	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000159720 #19	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36
spretus	MODERN SPECIES	2	Phb (MGP_SPRETEiJ_G0017855) #7	Zfp652 (MGP_SPRETEiJ_G0017856) #9	MGP_SPRETEiJ_G0017857	Phospho1 (MGP_SPRETEiJ_G0017858) #10	MGP_SPRETEiJ_G0017859 #11	Gngt2 (MGP_SPRETEiJ_G0017860) #12	B4galnt2 (MGP_SPRETEiJ_G0017861) #14	Igf2bp1 (MGP_SPRETEiJ_G0017862) #15	Gip (MGP_SPRETEiJ_G0017863) #16	Snf8 (MGP_SPRETEiJ_G0017864) #17	Ube2z (MGP_SPRETEiJ_G0017865) #18	Atp5g1 (MGP_SPRETEiJ_G0017866) #19	MGP_SPRETEiJ_G0017867	Ttll6 (MGP_SPRETEiJ_G0017868) #20	Hoxb13 (MGP_SPRETEiJ_G0017869) #21	Hoxb9 (MGP_SPRETEiJ_G0017870) #22	Hoxb8 (MGP_SPRETEiJ_G0017871) #23	Hoxb7 (MGP_SPRETEiJ_G0017872) #24	Hoxb6 (MGP_SPRETEiJ_G0017873) #25	Hoxb5 (MGP_SPRETEiJ_G0017874) #26	Hoxb4 (MGP_SPRETEiJ_G0017875) #27	Hoxb3 (MGP_SPRETEiJ_G0017876) #28	Hoxb2 (MGP_SPRETEiJ_G0017877) #29	Hoxb1 (MGP_SPRETEiJ_G0017878) #30	MGP_SPRETEiJ_G0017879 #31	Snx11 (MGP_SPRETEiJ_G0017880) #32	Cbx1 (MGP_SPRETEiJ_G0017881) ##33	MGP_SPRETEiJ_G0017882	Nfe2l1 (MGP_SPRETEiJ_G0017883) #34	Copz2 (MGP_SPRETEiJ_G0017884) #35	Cdk5rap3 (MGP_SPRETEiJ_G0017885) #36
Steppe mouse	MODERN SPECIES	3291	ENSMSIG00000019388	ENSMSIG00000019385	Zfp652 (ENSMSIG00000019372) #9	Phospho1 (ENSMSIG00000019336) #10	Abi3 (ENSMSIG00000019324) #11	Gngt2 (ENSMSIG00000019268) #12	B4galnt2 (ENSMSIG00000019230) #14	Igf2bp1 (ENSMSIG00000019193) #15	Gip (ENSMSIG00000019162) #16	Snf8 (ENSMSIG00000019072) #17	Ube2z (ENSMSIG00000019038) #18	Atp5g1 (ENSMSIG00000018986) #19	ENSMSIG00000018956	Ttll6 (ENSMSIG00000018881) #20	Hoxb13 (ENSMSIG00000018865) #21	Hoxb9 (ENSMSIG00000018823) #22	Hoxb8 (ENSMSIG00000018807) #23	Hoxb7 (ENSMSIG00000018805) #24	Hoxb6 (ENSMSIG00000018795) #25	Hoxb5 (ENSMSIG00000018787) #26	Hoxb4 (ENSMSIG00000018777) #27	ENSMSIG00000018776	Hoxb3 (ENSMSIG00000018771) #28	Hoxb2 (ENSMSIG00000018769) #29	Hoxb1 (ENSMSIG00000018752) #30	Skap1 (ENSMSIG00000018601) #31	Snx11 (ENSMSIG00000018546) #32	ENSMSIG00000018520	Cbx1 (ENSMSIG00000018447) ##33	Nfe2l1 (ENSMSIG00000018374) #34	Copz2 (ENSMSIG00000018337) #35
Mouse	MODERN SPECIES	2	Ngfr (ENSMUSG00000000120)	Phb (ENSMUSG00000038845) #7	Zfp652 (ENSMUSG00000075595) #9	Phospho1 (ENSMUSG00000050860) #10	Abi3 (ENSMUSG00000018381) #11	Gngt2 (ENSMUSG00000038811) #12	B4galnt2 (ENSMUSG00000013418) #14	Igf2bp1 (ENSMUSG00000013415) #15	Gip (ENSMUSG00000014351) #16	Snf8 (ENSMUSG00000006058) #17	Ube2z (ENSMUSG00000014349) #18	Atp5g1 (ENSMUSG00000006057) #19	Calcoco2 (ENSMUSG00000006056)	Ttll6 (ENSMUSG00000038756) #20	Hoxb13 (ENSMUSG00000049604) #21	Hoxb9 (ENSMUSG00000020875) #22	Hoxb8 (ENSMUSG00000056648) #23	Hoxb7 (ENSMUSG00000038721) #24	Hoxb6 (ENSMUSG00000000690) #25	Hoxb5 (ENSMUSG00000038700) #26	Hoxb4 (ENSMUSG00000038692) #27	Hoxb3 (ENSMUSG00000048763) #28	Hoxb2 (ENSMUSG00000075588) #29	Hoxb1 (ENSMUSG00000018973) #30	Skap1 (ENSMUSG00000057058) #31	Snx11 (ENSMUSG00000020876) #32	Cbx1 (ENSMUSG00000018666) ##33	Nfe2l1 (ENSMUSG00000038615) #34	Copz2 (ENSMUSG00000018672) #35	Cdk5rap3 (ENSMUSG00000018669) #36	Prr15l (ENSMUSG00000047040) #37
Ryukyu mouse	MODERN SPECIES	2	Ngfr (MGP_CAROLIEiJ_G0017009)	MGP_CAROLIEiJ_G0017010 #7	MGP_CAROLIEiJ_G0017011 #9	Phospho1 (MGP_CAROLIEiJ_G0017012) #10	Abi3 (MGP_CAROLIEiJ_G0017013) #11	Gngt2 (MGP_CAROLIEiJ_G0017014) #12	B4galnt2 (MGP_CAROLIEiJ_G0017015) #14	Igf2bp1 (MGP_CAROLIEiJ_G0017016) #15	Gip (MGP_CAROLIEiJ_G0017017) #16	Snf8 (MGP_CAROLIEiJ_G0017018) #17	MGP_CAROLIEiJ_G0017019 #18	MGP_CAROLIEiJ_G0017020 #19	MGP_CAROLIEiJ_G0017021	Ttll6 (MGP_CAROLIEiJ_G0017022) #20	Hoxb13 (MGP_CAROLIEiJ_G0017023) #21	Hoxb9 (MGP_CAROLIEiJ_G0017024) #22	Hoxb8 (MGP_CAROLIEiJ_G0017025) #23	Hoxb7 (MGP_CAROLIEiJ_G0017026) #24	Hoxb6 (MGP_CAROLIEiJ_G0017027) #25	Hoxb5 (MGP_CAROLIEiJ_G0017028) #26	Hoxb4 (MGP_CAROLIEiJ_G0017029) #27	Hoxb3 (MGP_CAROLIEiJ_G0017030) #28	Hoxb2 (MGP_CAROLIEiJ_G0017031) #29	Hoxb1 (MGP_CAROLIEiJ_G0017032) #30	Skap1 (MGP_CAROLIEiJ_G0017033) #31	Snx11 (MGP_CAROLIEiJ_G0017034) #32	Cbx1 (MGP_CAROLIEiJ_G0017035) ##33	MGP_CAROLIEiJ_G0017036	Nfe2l1 (MGP_CAROLIEiJ_G0017037) #34	Copz2 (MGP_CAROLIEiJ_G0017038) #35	Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #36
Shrew mouse	MODERN SPECIES	5	MGP_PahariEiJ_G0018139 #7	Zfp652 (MGP_PahariEiJ_G0018140) #9	MGP_PahariEiJ_G0018141	Phospho1 (MGP_PahariEiJ_G0018142) #10	Abi3 (MGP_PahariEiJ_G0018143) #11	Gngt2 (MGP_PahariEiJ_G0018144) #12	B4galnt2 (MGP_PahariEiJ_G0018145) #14	MGP_PahariEiJ_G0018146 #15	Gip (MGP_PahariEiJ_G0018147) #16	Snf8 (MGP_PahariEiJ_G0018148) #17	Ube2z (MGP_PahariEiJ_G0018149) #18	Atp5g1 (MGP_PahariEiJ_G0018150) #19	MGP_PahariEiJ_G0018151	Ttll6 (MGP_PahariEiJ_G0018152) #20	Hoxb13 (MGP_PahariEiJ_G0018153) #21	Hoxb9 (MGP_PahariEiJ_G0018154) #22	Hoxb8 (MGP_PahariEiJ_G0018155) #23	Hoxb7 (MGP_PahariEiJ_G0018156) #24	Hoxb6 (MGP_PahariEiJ_G0018157) #25	Hoxb5 (MGP_PahariEiJ_G0018158) #26	Hoxb4 (MGP_PahariEiJ_G0018159) #27	Hoxb3 (MGP_PahariEiJ_G0018160) #28	Hoxb2 (MGP_PahariEiJ_G0018161) #29	Hoxb1 (MGP_PahariEiJ_G0018162) #30	Skap1 (MGP_PahariEiJ_G0018163) #31	Snx11 (MGP_PahariEiJ_G0018164) #32	Cbx1 (MGP_PahariEiJ_G0018165) ##33	MGP_PahariEiJ_G0018166	Nfe2l1 (MGP_PahariEiJ_G0018167) #34	Copz2 (MGP_PahariEiJ_G0018168) #35	Cdk5rap3 (MGP_PahariEiJ_G0018169) #36
Rat	MODERN SPECIES	1	Nxph3 (ENSRNOG00000005185)	Ngfr (ENSRNOG00000005392)	Phb1 (ENSRNOG00000046799) #7	Zfp652 (ENSRNOG00000017001) #9	ENSRNOG00000068958	Phospho1 (ENSRNOG00000005569) #10	Abi3 (ENSRNOG00000005575) #11	B4galnt2 (ENSRNOG00000067203) #14	Igf2bp1 (ENSRNOG00000006122) #15	Gip (ENSRNOG00000006306) #16	Snf8 (ENSRNOG00000006500) #17	Ube2z (ENSRNOG00000006868) #18	ENSRNOG00000066153	Ttll6 (ENSRNOG00000004939) #20	Hoxb13 (ENSRNOG00000007491) #21	Hoxb9 (ENSRNOG00000007573) #22	Hoxb8 (ENSRNOG00000007585) #23	Hoxb7 (ENSRNOG00000007611) #24	Hoxb6 (ENSRNOG00000007823) #25	Hoxb5 (ENSRNOG00000008010) #26	Hoxb4 (ENSRNOG00000008191) #27	Hoxb3 (ENSRNOG00000008313) #28	Hoxb2 (ENSRNOG00000008365) #29	Hoxb1 (ENSRNOG00000008506) #30	Skap1 (ENSRNOG00000023881) #31	Snx11 (ENSRNOG00000008642) #32	Cbx1 (ENSRNOG00000008689) ##33	Nfe2l1 (ENSRNOG00000008830) #34	Copz2 (ENSRNOG00000009225) #35	Cdk5rap3 (ENSRNOG00000048747) #36	Prr15l (ENSRNOG00000049162) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Ngfr (ENSNGAG00000016145)	Phb (ENSNGAG00000012333) #7	Zfp652 (ENSNGAG00000010366) #9	Phospho1 (ENSNGAG00000008704) #10	Abi3 (ENSNGAG00000003386) #11	Gngt2 (ENSNGAG00000001081) #12	B4galnt2 (ENSNGAG00000016426) #14	Igf2bp1 (ENSNGAG00000015679) #15	Gip (ENSNGAG00000020354) #16	Snf8 (ENSNGAG00000001366) #17	Ube2z (ENSNGAG00000024296) #18	ENSNGAG00000024212 #19	ENSNGAG00000023585	Ttll6 (ENSNGAG00000011763) #20	Hoxb13 (ENSNGAG00000011053) #21	Hoxb9 (ENSNGAG00000010851) #22	Hoxb8 (ENSNGAG00000010647) #23	Hoxb7 (ENSNGAG00000010205) #24	Hoxb6 (ENSNGAG00000000973) #25	Hoxb5 (ENSNGAG00000023238) #26	Hoxb4 (ENSNGAG00000021768) #27	Hoxb3 (ENSNGAG00000020227) #28	Hoxb2 (ENSNGAG00000019089) #29	Hoxb1 (ENSNGAG00000018593) #30	Skap1 (ENSNGAG00000012571) #31	Snx11 (ENSNGAG00000010446) #32	Cbx1 (ENSNGAG00000006760) ##33	Nfe2l1 (ENSNGAG00000000736) #34	Copz2 (ENSNGAG00000023713) #35	ENSNGAG00000000747 #36	ENSNGAG00000022529
Kangaroo rat	MODERN SPECIES	326	Spop (ENSDORG00000001680)	Nxph3 (ENSDORG00000001674)	Ngfr (ENSDORG00000004457)	ENSDORG00000004455 #7	Zfp652 (ENSDORG00000028287) #9	Phospho1 (ENSDORG00000002249) #10	Abi3 (ENSDORG00000002245) #11	Gngt2 (ENSDORG00000023588) #12	Igf2bp1 (ENSDORG00000014371) #15	Snf8 (ENSDORG00000009262) #17	Ube2z (ENSDORG00000009258) #18	ENSDORG00000008511	ENSDORG00000028385	ENSDORG00000024585	Hoxb13 (ENSDORG00000008369) #21	Hoxb9 (ENSDORG00000027423) #22	Hoxb8 (ENSDORG00000007906) #23	Hoxb7 (ENSDORG00000007905) #24	Hoxb6 (ENSDORG00000023877) #25	Hoxb5 (ENSDORG00000007900) #26	Hoxb4 (ENSDORG00000007899) #27	Hoxb3 (ENSDORG00000007898) #28	Hoxb2 (ENSDORG00000007897) #29	Hoxb1 (ENSDORG00000007896) #30	Snx11 (ENSDORG00000029078) #32	Cbx1 (ENSDORG00000026399) ##33	Nfe2l1 (ENSDORG00000000715) #34	Copz2 (ENSDORG00000013441) #35	Prr15l (ENSDORG00000027427) #37	Pnpo (ENSDORG00000014110)	Sp2 (ENSDORG00000014109)
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00990000209473	ENSGT00940000159091 #18	ENSGT00940000154298.a.b	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36	ENSGT00940000154534.a #37
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00990000209473	ENSGT00940000159091 #18	ENSGT00940000154298.a.b	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36	ENSGT00940000154534.a #37
Marmotini	ANCESTRAL SPECIES	8	ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000154298.a.b	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36	ENSGT00940000154534.a #37
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000154298.a.b	ENSGT00940000159720 #19	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36	ENSGT00940000154534.a #37
Squirrel	MODERN SPECIES	90	ENSSTOG00000019929 #7	ZNF652 (ENSSTOG00000011303) #9	PHOSPHO1 (ENSSTOG00000007651) #10	ABI3 (ENSSTOG00000020017) #11	GNGT2 (ENSSTOG00000007644) #12	B4GALNT2 (ENSSTOG00000007604) #14	IGF2BP1 (ENSSTOG00000010643) #15	GIP (ENSSTOG00000004043) #16	SNF8 (ENSSTOG00000004023) #17	UBE2Z (ENSSTOG00000000796) #18	ATP5MC1 (ENSSTOG00000013404)	ENSSTOG00000013395	TTLL6 (ENSSTOG00000006016) #20	ENSSTOG00000025444	HOXB13 (ENSSTOG00000014942) #21	HOXB9 (ENSSTOG00000009741) #22	HOXB8 (ENSSTOG00000028337) #23	HOXB7 (ENSSTOG00000025657) #24	HOXB6 (ENSSTOG00000020303) #25	HOXB5 (ENSSTOG00000009740) #26	HOXB4 (ENSSTOG00000009734) #27	HOXB3 (ENSSTOG00000025093) #28	HOXB2 (ENSSTOG00000023586) #29	HOXB1 (ENSSTOG00000028630) #30	SKAP1 (ENSSTOG00000013692) #31	SNX11 (ENSSTOG00000013684) #32	CBX1 (ENSSTOG00000023986) ##33	NFE2L1 (ENSSTOG00000013664) #34	ENSSTOG00000027550 #35	CDK5RAP3 (ENSSTOG00000006244) #36	PRR15L (ENSSTOG00000006235) #37
Arctic ground squirrel	MODERN SPECIES	46	NGFR (ENSUPAG00010006025)	PHB1 (ENSUPAG00010006031) #7	ZNF652 (ENSUPAG00010006043) #9	PHOSPHO1 (ENSUPAG00010006065) #10	ABI3 (ENSUPAG00010006071) #11	GNGT2 (ENSUPAG00010006078) #12	B4GALNT2 (ENSUPAG00010006086) #14	IGF2BP1 (ENSUPAG00010006100) #15	GIP (ENSUPAG00010006136) #16	SNF8 (ENSUPAG00010006148) #17	UBE2Z (ENSUPAG00010006178) #18	ENSUPAG00010006195 #19	CALCOCO2 (ENSUPAG00010006243)	TTLL6 (ENSUPAG00010006267) #20	HOXB13 (ENSUPAG00010006301) #21	HOXB9 (ENSUPAG00010006305) #22	HOXB8 (ENSUPAG00010006310) #23	HOXB7 (ENSUPAG00010006312) #24	HOXB6 (ENSUPAG00010006317) #25	HOXB5 (ENSUPAG00010006320) #26	HOXB4 (ENSUPAG00010006325) #27	HOXB3 (ENSUPAG00010006328) #28	HOXB2 (ENSUPAG00010006336) #29	HOXB1 (ENSUPAG00010006340) #30	SKAP1 (ENSUPAG00010006345) #31	SNX11 (ENSUPAG00010006370) #32	CBX1 (ENSUPAG00010006381) ##33	NFE2L1 (ENSUPAG00010006396) #34	COPZ2 (ENSUPAG00010006455) #35	CDK5RAP3 (ENSUPAG00010006466) #36	PRR15L (ENSUPAG00010006473) #37
Eurasian red squirrel	MODERN SPECIES	12	PHB1 (ENSSVLG00005021310) #7	ZNF652 (ENSSVLG00005021244) #9	ENSSVLG00005021191 #10	ABI3 (ENSSVLG00005021097) #11	GNGT2 (ENSSVLG00005021063) #12	B4GALNT2 (ENSSVLG00005020850) #14	IGF2BP1 (ENSSVLG00005020596) #15	GIP (ENSSVLG00005020522) #16	SNF8 (ENSSVLG00005020472) #17	ENSSVLG00005020450	UBE2Z (ENSSVLG00005020428) #18	ATP5MC1 (ENSSVLG00005020344)	CALCOCO2 (ENSSVLG00005020296)	TTLL6 (ENSSVLG00005020005) #20	HOXB13 (ENSSVLG00005019820) #21	HOXB9 (ENSSVLG00005019725) #22	HOXB8 (ENSSVLG00005019675) #23	HOXB7 (ENSSVLG00005019618) #24	HOXB6 (ENSSVLG00005019586) #25	HOXB5 (ENSSVLG00005019546) #26	HOXB4 (ENSSVLG00005019455) #27	HOXB3 (ENSSVLG00005019421) #28	HOXB2 (ENSSVLG00005019378) #29	HOXB1 (ENSSVLG00005019304) #30	SKAP1 (ENSSVLG00005019232) #31	SNX11 (ENSSVLG00005019122) #32	CBX1 (ENSSVLG00005019034) ##33	NFE2L1 (ENSSVLG00005018798) #34	COPZ2 (ENSSVLG00005018641) #35	CDK5RAP3 (ENSSVLG00005018459) #36	PRR15L (ENSSVLG00005018399) #37
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000154298.a.b	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36	ENSGT00940000154534.a #37
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000011644 #7	ZNF652 (ENSHGLG00000010452) #9	PHOSPHO1 (ENSHGLG00000011269) #10	ABI3 (ENSHGLG00000012283) #11	GNGT2 (ENSHGLG00000048834) #12	B4GALNT2 (ENSHGLG00000011792) #14	IGF2BP1 (ENSHGLG00000010492) #15	ENSHGLG00000010703 #16	SNF8 (ENSHGLG00000011519) #17	UBE2Z (ENSHGLG00000016280) #18	ATP5MC1 (ENSHGLG00000035460)	CALCOCO2 (ENSHGLG00000012114)	TTLL6 (ENSHGLG00000019187) #20	HOXB13 (ENSHGLG00000014634) #21	ENSHGLG00000048296	HOXB9 (ENSHGLG00000014731) #22	HOXB8 (ENSHGLG00000038380) #23	HOXB7 (ENSHGLG00000045318) #24	HOXB6 (ENSHGLG00000012400) #25	HOXB5 (ENSHGLG00000039265) #26	HOXB4 (ENSHGLG00000034075) #27	HOXB3 (ENSHGLG00000010686) #28	HOXB2 (ENSHGLG00000010090) #29	HOXB1 (ENSHGLG00000009781) #30	SKAP1 (ENSHGLG00000014563) #31	SNX11 (ENSHGLG00000016837) #32	CBX1 (ENSHGLG00000013574) ##33	NFE2L1 (ENSHGLG00000012592) #34	COPZ2 (ENSHGLG00000018543) #35	CDK5RAP3 (ENSHGLG00000019464) #36	PRR15L (ENSHGLG00000014696) #37
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000154298.a.b	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36	ENSGT00940000154534.a #37
Guinea pig	MODERN SPECIES	53	NGFR (ENSCPOG00000001114)	PHB1 (ENSCPOG00000000430) #7	ZNF652 (ENSCPOG00000039975) #9	PHOSPHO1 (ENSCPOG00000024347) #10	ENSCPOG00000020987 #11	GNGT2 (ENSCPOG00000030054) #12	B4GALNT2 (ENSCPOG00000006191) #14	IGF2BP1 (ENSCPOG00000020174) #15	GIP (ENSCPOG00000023966) #16	SNF8 (ENSCPOG00000020610) #17	UBE2Z (ENSCPOG00000024416) #18	ENSCPOG00000009017	CALCOCO2 (ENSCPOG00000021273)	TTLL6 (ENSCPOG00000012509) #20	HOXB13 (ENSCPOG00000013509) #21	HOXB9 (ENSCPOG00000037597) #22	HOXB6 (ENSCPOG00000040707) #25	HOXB5 (ENSCPOG00000030746) #26	ENSCPOG00000010105	ENSCPOG00000010107 #28	HOXB2 (ENSCPOG00000035468) #29	HOXB1 (ENSCPOG00000022183) #30	SKAP1 (ENSCPOG00000022118) #31	SNX11 (ENSCPOG00000020234) #32	CBX1 (ENSCPOG00000034435) ##33	NFE2L1 (ENSCPOG00000030805) #34	COPZ2 (ENSCPOG00000019500) #35	CDK5RAP3 (ENSCPOG00000007275) #36	PRR15L (ENSCPOG00000035567) #37	PNPO (ENSCPOG00000003187)	SP2 (ENSCPOG00000014943)
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00730000110974	ENSGT00950000183070.a.b.h #7	ENSGT00940000157416 #9	ENSGT00390000007741.a #10	ENSGT00940000161380 #11	ENSGT01100000263525.b.a #12	ENSGT00390000006679.b #14	ENSGT00940000160427 #15	ENSGT00390000005121 #16	ENSGT00390000007843 #17	ENSGT00940000159091 #18	ENSGT00940000154298.a.b	ENSGT00950000183025.a	ENSGT00940000161434 #20	ENSGT00940000159029 #21	ENSGT00940000161386 #22	ENSGT00940000161529 #23	ENSGT00940000161230 #24	ENSGT00940000161108 #25	ENSGT00940000158354 #26	ENSGT00940000162072 #27	ENSGT00940000159774 #28	ENSGT00940000155029.c.b #29	ENSGT00940000159503 #30	ENSGT00390000017856.b #31	ENSGT00940000160113 #32	ENSGT00940000154152.d.b.dc.b ##33	ENSGT00950000182892.a.b.a.a #34	ENSGT00390000004405.b #35	ENSGT00390000000713 #36	ENSGT00940000154534.a #37
Degu	MODERN SPECIES	97	ENSODEG00000017118 #7	ENSODEG00000020479	ZNF652 (ENSODEG00000017173) #9	PHOSPHO1 (ENSODEG00000017221) #10	ABI3 (ENSODEG00000017358) #11	GNGT2 (ENSODEG00000017526) #12	B4GALNT2 (ENSODEG00000018456) #14	ENSODEG00000016991 #15	ENSODEG00000017109	GIP (ENSODEG00000017003) #16	ENSODEG00000017032 #17	UBE2Z (ENSODEG00000017306) #18	ATP5MC1 (ENSODEG00000017366)	TTLL6 (ENSODEG00000017145) #20	HOXB13 (ENSODEG00000017199) #21	HOXB9 (ENSODEG00000017293) #22	HOXB8 (ENSODEG00000017119) #23	HOXB6 (ENSODEG00000016988) #25	HOXB5 (ENSODEG00000017253) #26	HOXB4 (ENSODEG00000017038) #27	HOXB3 (ENSODEG00000017116) #28	HOXB2 (ENSODEG00000017153) #29	HOXB1 (ENSODEG00000017050) #30	SKAP1 (ENSODEG00000017533) #31	SNX11 (ENSODEG00000017458) #32	CBX1 (ENSODEG00000017272) ##33	NFE2L1 (ENSODEG00000017348) #34	ENSODEG00000020421	COPZ2 (ENSODEG00000017565) #35	ENSODEG00000017229 #36	PNPO (ENSODEG00000017424)
Long-tailed chinchilla	MODERN SPECIES	158	NGFR (ENSCLAG00000015829)	PHB1 (ENSCLAG00000013248) #7	ZNF652 (ENSCLAG00000013368) #9	PHOSPHO1 (ENSCLAG00000015042) #10	ABI3 (ENSCLAG00000015475) #11	GNGT2 (ENSCLAG00000014970) #12	B4GALNT2 (ENSCLAG00000016224) #14	IGF2BP1 (ENSCLAG00000015853) #15	ENSCLAG00000014301 #16	SNF8 (ENSCLAG00000013387) #17	UBE2Z (ENSCLAG00000016068) #18	ATP5MC1 (ENSCLAG00000015723)	CALCOCO2 (ENSCLAG00000015881)	TTLL6 (ENSCLAG00000013529) #20	HOXB13 (ENSCLAG00000014855) #21	ENSCLAG00000015198 #22	HOXB7 (ENSCLAG00000014906) #24	HOXB6 (ENSCLAG00000015524) #25	HOXB5 (ENSCLAG00000014374) #26	HOXB4 (ENSCLAG00000014725) #27	HOXB3 (ENSCLAG00000015322) #28	HOXB2 (ENSCLAG00000015271) #29	HOXB1 (ENSCLAG00000013047) #30	SKAP1 (ENSCLAG00000015423) #31	SNX11 (ENSCLAG00000015837) #32	CBX1 (ENSCLAG00000013587) ##33	NFE2L1 (ENSCLAG00000014836) #34	COPZ2 (ENSCLAG00000013544) #35	CDK5RAP3 (ENSCLAG00000012292) #36	PRR15L (ENSCLAG00000017903) #37	PNPO (ENSCLAG00000013871)