Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Primates	ANCESTRAL SPECIES	13	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00940000155099.a #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00940000155099.a #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00910000147400	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##30	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.jb ##33	ENSGT00390000010116.kb #33
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135.g #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00910000147400	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##30	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.jb ##33	ENSGT00390000010116.kb #33
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135.g #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00910000147400	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.jb ##33	ENSGT00390000010116.kb #33	ENSGT00940000162151 #34
Vervet Monkey	MODERN SPECIES	1	CDCA7 (ENSCSAG00000014699) #7	SP3 (ENSCSAG00000014689) #8	OLA1 (ENSCSAG00000014670) #9	SP9 (ENSCSAG00000014648) #10	CIR1 (ENSCSAG00000014627) #11	SCRN3 (ENSCSAG00000014584) #12	GPR155 (ENSCSAG00000014572) #13	WIPF1 (ENSCSAG00000014556) #14	CHRNA1 (ENSCSAG00000014545) #15	CHN1 (ENSCSAG00000014539) #16	ATF2 (ENSCSAG00000014523) #17	LNPK (ENSCSAG00000014506) #18	EVX2 (ENSCSAG00000014486) #19	HOXD13 (ENSCSAG00000014475) #20	HOXD12 (ENSCSAG00000014464) #21	HOXD11 (ENSCSAG00000014457) #22	HOXD10 (ENSCSAG00000014448) #23	HOXD9 (ENSCSAG00000014441) #24	HOXD8 (ENSCSAG00000014437) #25	HOXD4 (ENSCSAG00000014429) #26	HOXD3 (ENSCSAG00000014422) #27	HOXD1 (ENSCSAG00000014419) #28	MTX2 (ENSCSAG00000014412) #29	ENSCSAG00000014399 #30	NFE2L2 (ENSCSAG00000014353) #31	AGPS (ENSCSAG00000014345) #32	TTC30A (ENSCSAG00000018651) #33	PDE11A (ENSCSAG00000014313) #34	ENSCSAG00000014240 #35	RBM45 (ENSCSAG00000014231) #36	OSBPL6 (ENSCSAG00000014221) #37
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00730000111135.g #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000165163	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #18	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00910000147400	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.jb ##33	ENSGT00390000010116.kb #33	ENSGT00940000162151 #34
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000165163	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00950000182827.A.i.b	ENSGT00950000182827.A.j	ENSGT00390000001859 #18	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00910000147400	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.jb ##33	ENSGT00390000010116.kb #33	ENSGT00940000162151 #34
Olive baboon	MODERN SPECIES	1	ENSPANG00000035758	SP9 (ENSPANG00000051025) #10	CIR1 (ENSPANG00000033102) #11	SCRN3 (ENSPANG00000001316) #12	GPR155 (ENSPANG00000006559) #13	WIPF1 (ENSPANG00000019541) #14	CHRNA1 (ENSPANG00000007790) #15	CHN1 (ENSPANG00000008236) #16	ENSPANG00000005473	ATF2 (ENSPANG00000004806) #17	ATP5MC3 (ENSPANG00000031591)	LNPK (ENSPANG00000011787) #18	ENSPANG00000039545 #19	ENSPANG00000044695 #20	ENSPANG00000044332 #21	HOXD11 (ENSPANG00000049530) #22	HOXD10 (ENSPANG00000050198) #23	HOXD9 (ENSPANG00000001061) #24	HOXD8 (ENSPANG00000049199) #25	HOXD4 (ENSPANG00000000542) #26	HOXD3 (ENSPANG00000000543) #27	HOXD1 (ENSPANG00000009593) #28	MTX2 (ENSPANG00000013333) #29	ENSPANG00000045287	ENSPANG00000018337 #30	NFE2L2 (ENSPANG00000039361) #31	AGPS (ENSPANG00000004764) #32	TTC30B (ENSPANG00000046724) ##33	TTC30A (ENSPANG00000041839) #33	PDE11A (ENSPANG00000025222) #34	ENSPANG00000029672
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000165163	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00950000182827.A.i.b	ENSGT00950000182827.A.j	ENSGT00390000001859 #18	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00910000147400	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.jb ##33	ENSGT00390000010116.kb #33	ENSGT00940000162151 #34
Sooty mangabey	MODERN SPECIES	570	GPR155 (ENSCATG00000033300) #13	WIPF1 (ENSCATG00000022645) #14	CHRNA1 (ENSCATG00000030584) #15	CHN1 (ENSCATG00000036640) #16	ENSCATG00000035911	ATF2 (ENSCATG00000005694) #17	ATP5MC3 (ENSCATG00000035329)	ENSCATG00000037951	ENSCATG00000041432	LNPK (ENSCATG00000039052) #18	ENSCATG00000005782	EVX2 (ENSCATG00000038250) #19	HOXD13 (ENSCATG00000031889) #20	HOXD12 (ENSCATG00000032043) #21	HOXD10 (ENSCATG00000032256) #23	HOXD11 (ENSCATG00000031157) #22	HOXD9 (ENSCATG00000037190) #24	HOXD8 (ENSCATG00000032148) #25	HOXD4 (ENSCATG00000041719) #26	HOXD3 (ENSCATG00000029355) #27	ENSCATG00000032250	HOXD1 (ENSCATG00000032397) #28	MTX2 (ENSCATG00000039959) #29	ENSCATG00000022731	HNRNPA3 (ENSCATG00000032162) #30	ENSCATG00000001855	NFE2L2 (ENSCATG00000036834) #31	AGPS (ENSCATG00000038387) #32	TTC30B (ENSCATG00000004635) ##33	TTC30A (ENSCATG00000000123) #33	PDE11A (ENSCATG00000042325) #34
Drill	MODERN SPECIES	1072	CIR1 (ENSMLEG00000009014) #11	SCRN3 (ENSMLEG00000043626) #12	GPR155 (ENSMLEG00000027961) #13	ENSMLEG00000029654	WIPF1 (ENSMLEG00000001484) #14	CHRNA1 (ENSMLEG00000043089) #15	ENSMLEG00000000615	CHN1 (ENSMLEG00000032406) #16	ATF2 (ENSMLEG00000035167) #17	ATP5MC3 (ENSMLEG00000043816)	ENSMLEG00000001270	LNPK (ENSMLEG00000033659) #18	EVX2 (ENSMLEG00000035528) #19	HOXD13 (ENSMLEG00000031532) #20	HOXD12 (ENSMLEG00000032533) #21	ENSMLEG00000030792 #22	HOXD10 (ENSMLEG00000044067) #23	HOXD9 (ENSMLEG00000025695) #24	ENSMLEG00000042507 #25	HOXD4 (ENSMLEG00000024188) #26	HOXD3 (ENSMLEG00000037278) #27	HOXD1 (ENSMLEG00000035890) #28	MTX2 (ENSMLEG00000002029) #29	NFE2L2 (ENSMLEG00000042705) #31	AGPS (ENSMLEG00000033858) #32	TTC30B (ENSMLEG00000027894) ##33	TTC30A (ENSMLEG00000027775) #33	ENSMLEG00000039892	ENSMLEG00000035955	PDE11A (ENSMLEG00000044286) #34	RBM45 (ENSMLEG00000042404) #36
Macaca	ANCESTRAL SPECIES	15	ENSGT00730000111135.g #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000165163	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00390000018390.jc.n	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00910000147400	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.jb ##33	ENSGT00390000010116.kb #33	ENSGT00940000162151 #34
Pig-tailed macaque	MODERN SPECIES	585	SCRN3 (ENSMNEG00000035295) #12	GPR155 (ENSMNEG00000028550) #13	ENSMNEG00000031252	WIPF1 (ENSMNEG00000045560) #14	CHRNA1 (ENSMNEG00000043912) #15	ENSMNEG00000009103	CHN1 (ENSMNEG00000033120) #16	ATF2 (ENSMNEG00000037988) #17	ATP5MC3 (ENSMNEG00000029106)	ENSMNEG00000035184	LNPK (ENSMNEG00000028702) #18	ENSMNEG00000024050	EVX2 (ENSMNEG00000028323) #19	HOXD13 (ENSMNEG00000027142) #20	HOXD12 (ENSMNEG00000002891) #21	HOXD11 (ENSMNEG00000029127) #22	HOXD10 (ENSMNEG00000033923) #23	HOXD9 (ENSMNEG00000044938) #24	HOXD8 (ENSMNEG00000028133) #25	HOXD4 (ENSMNEG00000030845) #26	HOXD3 (ENSMNEG00000040202) #27	ENSMNEG00000018849	HOXD1 (ENSMNEG00000010514) #28	MTX2 (ENSMNEG00000032881) #29	ENSMNEG00000026533	ENSMNEG00000034936 ##30	NFE2L2 (ENSMNEG00000028208) #31	AGPS (ENSMNEG00000043672) #32	TTC30B (ENSMNEG00000011632) ##33	TTC30A (ENSMNEG00000000192) #33	PDE11A (ENSMNEG00000037080) #34
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00940000162304 #10	ENSGT00730000111135.g #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000166143.A.a.b.b.b.b.a.b.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00950000182827.A.j	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00910000147400	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000170471.B.a.a.a	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.jb ##33	ENSGT00390000010116.kb #33
Rhesus	MODERN SPECIES	3	OLA1 (ENSMMUG00000007092) #9	SP9 (ENSMMUG00000023005) #10	CIR1 (ENSMMUG00000023006) #11	SCRN3 (ENSMMUG00000023009) #12	GPR155 (ENSMMUG00000021012) #13	ENSMMUG00000053004	WIPF1 (ENSMMUG00000009593) #14	CHRNA1 (ENSMMUG00000021796) #15	CHN1 (ENSMMUG00000021797) #16	ATF2 (ENSMMUG00000003947) #17	ATP5MC3 (ENSMMUG00000003954)	LNPK (ENSMMUG00000023498) #18	EVX2 (ENSMMUG00000061506) #19	HOXD13 (ENSMMUG00000055831) #20	HOXD12 (ENSMMUG00000023501) #21	HOXD11 (ENSMMUG00000047915) #22	HOXD10 (ENSMMUG00000046368) #23	HOXD9 (ENSMMUG00000032599) #24	HOXD8 (ENSMMUG00000023504) #25	HOXD4 (ENSMMUG00000060947) #26	HOXD3 (ENSMMUG00000051761) #27	ENSMMUG00000052177	HOXD1 (ENSMMUG00000065344) #28	MTX2 (ENSMMUG00000010185) #29	ENSMMUG00000031367	ENSMMUG00000054983	ENSMMUG00000062299	HNRNPA3 (ENSMMUG00000001858) #30	NFE2L2 (ENSMMUG00000001861) #31	ENSMMUG00000065205	AGPS (ENSMMUG00000008502) #32
Crab-eating macaque	MODERN SPECIES	3	GPR155 (ENSMFAG00000035341) #13	SCRN3 (ENSMFAG00000042925) #12	ENSMFAG00000056942	ENSMFAG00000039499	ENSMFAG00000060672	WIPF1 (ENSMFAG00000034165) #14	CHRNA1 (ENSMFAG00000042992) #15	CHN1 (ENSMFAG00000002404) #16	ATF2 (ENSMFAG00000002278) #17	ATP5MC3 (ENSMFAG00000056189)	ENSMFAG00000002936	LNPK (ENSMFAG00000002105) #18	ENSMFAG00000053875	HOXD13 (ENSMFAG00000033237) #20	HOXD12 (ENSMFAG00000051547) #21	ENSMFAG00000043724 #22	HOXD10 (ENSMFAG00000031117) #23	HOXD9 (ENSMFAG00000000099) #24	HOXD8 (ENSMFAG00000065214) #25	HOXD4 (ENSMFAG00000052240) #26	HOXD3 (ENSMFAG00000034065) #27	ENSMFAG00000047422	HOXD1 (ENSMFAG00000046035) #28	MTX2 (ENSMFAG00000026822) #29	ENSMFAG00000065500	ENSMFAG00000058081	HNRNPA3 (ENSMFAG00000000823) #30	NFE2L2 (ENSMFAG00000041108) #31	AGPS (ENSMFAG00000038904) #32	TTC30B (ENSMFAG00000057741) ##33	TTC30A (ENSMFAG00000053112) #33
Rhinopithecus	ANCESTRAL SPECIES	148									ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00950000182827.A.i.b	ENSGT00390000001859.c #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00940000154301.`b.a	ENSGT00960000186717.a	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##30	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.kb #33	ENSGT00940000162151 #34
Golden snub-nosed monkey	MODERN SPECIES	722											ENSRROG00000041768 #18	ENSRROG00000044546	EVX2 (ENSRROG00000044705) #19	HOXD13 (ENSRROG00000040419) #20	HOXD12 (ENSRROG00000043268) #21	ENSRROG00000043226 #22	HOXD9 (ENSRROG00000032216) #24	HOXD10 (ENSRROG00000036162) #23	ENSRROG00000024611 #25	HOXD4 (ENSRROG00000026646) #26	HOXD3 (ENSRROG00000044509) #27	HOXD1 (ENSRROG00000035364) #28	ENSRROG00000038369	ENSRROG00000042876	ENSRROG00000020854	MTX2 (ENSRROG00000030249) #29	ENSRROG00000028794 #30	NFE2L2 (ENSRROG00000045317) #31	AGPS (ENSRROG00000035068) #32	TTC30A (ENSRROG00000023478) #33	PDE11A (ENSRROG00000028809) #34
Black snub-nosed monkey	MODERN SPECIES	241											ATF2 (ENSRBIG00000041657) #17	ATP5MC3 (ENSRBIG00000040343)	ENSRBIG00000038159	LNPK (ENSRBIG00000038235) #18	HOXD13 (ENSRBIG00000033719) #20	ENSRBIG00000035253 #22	HOXD12 (ENSRBIG00000040792) #21	HOXD10 (ENSRBIG00000030470) #23	HOXD9 (ENSRBIG00000035340) #24	HOXD8 (ENSRBIG00000036417) #25	HOXD4 (ENSRBIG00000027637) #26	HOXD3 (ENSRBIG00000044829) #27	HOXD1 (ENSRBIG00000031297) #28	ENSRBIG00000032024	ENSRBIG00000042767	MTX2 (ENSRBIG00000043097) #29	ENSRBIG00000012615 ##30	NFE2L2 (ENSRBIG00000042825) #31	AGPS (ENSRBIG00000039582) #32	TTC30A (ENSRBIG00000041155) #33	ENSRBIG00000030274
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00910000147400	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##30	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.jb ##33	ENSGT00390000010116.kb #33
Hominidae	ANCESTRAL SPECIES	17	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00910000147400	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##30	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.jb ##33	ENSGT00390000010116.kb #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00910000147400	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.jb ##33	ENSGT00390000010116.kb #33	ENSGT00940000162151 #34
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00910000147400	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.jb ##33	ENSGT00390000010116.kb #33	ENSGT00940000162151 #34
Pan	ANCESTRAL SPECIES	12	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00910000147400	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.jb ##33	ENSGT00390000010116.kb #33	ENSGT00940000162151 #34
Chimpanzee	MODERN SPECIES	15	SP3 (ENSPTRG00000012647) #8	OLA1 (ENSPTRG00000012650) #9	SP9 (ENSPTRG00000045805) #10	CIR1 (ENSPTRG00000012652) #11	SCRN3 (ENSPTRG00000012653) #12	GPR155 (ENSPTRG00000012655) #13	WIPF1 (ENSPTRG00000012656)	CHRNA1 (ENSPTRG00000012658) #15	CHN1 (ENSPTRG00000012659) #16	ATF2 (ENSPTRG00000012660) #17	ATP5MC3 (ENSPTRG00000047314)	LNPK (ENSPTRG00000012662) #18	EVX2 (ENSPTRG00000012663) #19	HOXD13 (ENSPTRG00000012664) #20	HOXD12 (ENSPTRG00000012665) #21	HOXD11 (ENSPTRG00000012666) #22	HOXD10 (ENSPTRG00000012667) #23	HOXD9 (ENSPTRG00000043464) #24	HOXD8 (ENSPTRG00000012669) #25	HOXD4 (ENSPTRG00000051862) #26	HOXD3 (ENSPTRG00000012672) #27	ENSPTRG00000051348	HOXD1 (ENSPTRG00000052716) #28	ENSPTRG00000023851	MTX2 (ENSPTRG00000012674) #29	ENSPTRG00000042815	HNRNPA3 (ENSPTRG00000012676) #30	NFE2L2 (ENSPTRG00000012677) #31	AGPS (ENSPTRG00000012680) #32	TTC30B (ENSPTRG00000048299) ##33	TTC30A (ENSPTRG00000044238) #33
Bonobo	MODERN SPECIES	15	SP3 (ENSPPAG00000028328) #8	OLA1 (ENSPPAG00000035004) #9	CIR1 (ENSPPAG00000041485) #11	SCRN3 (ENSPPAG00000032328) #12	GPR155 (ENSPPAG00000032733) #13	ENSPPAG00000040473	WIPF1 (ENSPPAG00000037968) #14	CHRNA1 (ENSPPAG00000024985) #15	ENSPPAG00000023882 #16	ATF2 (ENSPPAG00000027656) #17	ATP5MC3 (ENSPPAG00000036512)	LNPK (ENSPPAG00000030440) #18	ENSPPAG00000039855 #19	ENSPPAG00000010483 #20	HOXD12 (ENSPPAG00000017089) #21	ENSPPAG00000028125 #22	HOXD10 (ENSPPAG00000036046) #23	HOXD9 (ENSPPAG00000039242) #24	ENSPPAG00000034189 #25	HOXD4 (ENSPPAG00000034992) #26	HOXD3 (ENSPPAG00000031713) #27	ENSPPAG00000013988	ENSPPAG00000031665 #28	ENSPPAG00000025118	MTX2 (ENSPPAG00000043265) #29	ENSPPAG00000012679	HNRNPA3 (ENSPPAG00000023768) #30	NFE2L2 (ENSPPAG00000037501) #31	AGPS (ENSPPAG00000036868) #32	TTC30B (ENSPPAG00000019313) ##33	TTC30A (ENSPPAG00000023829) #33
Human	MODERN SPECIES	11	SP3 (ENSG00000172845) #8	OLA1 (ENSG00000138430) #9	SP9 (ENSG00000217236) #10	CIR1 (ENSG00000138433) #11	SCRN3 (ENSG00000144306) #12	GPR155 (ENSG00000163328) #13	WIPF1 (ENSG00000115935) #14	CHRNA1 (ENSG00000138435) #15	CHN1 (ENSG00000128656) #16	ATF2 (ENSG00000115966) #17	ATP5MC3 (ENSG00000154518)	LNPK (ENSG00000144320) #18	EVX2 (ENSG00000174279) #19	HOXD13 (ENSG00000128714) #20	HOXD12 (ENSG00000170178) #21	HOXD11 (ENSG00000128713) #22	HOXD10 (ENSG00000128710) #23	HOXD9 (ENSG00000128709) #24	HOXD8 (ENSG00000175879) #25	HOXD3 (ENSG00000128652) #27	HOXD4 (ENSG00000170166) #26	HOXD1 (ENSG00000128645) #28	MTX2 (ENSG00000128654) #29	HNRNPA3 (ENSG00000170144) #30	NFE2L2 (ENSG00000116044) #31	AGPS (ENSG00000018510) #32	TTC30B (ENSG00000196659) ##33	TTC30A (ENSG00000197557) #33	PDE11A (ENSG00000128655) #34	RBM45 (ENSG00000155636) #36	OSBPL6 (ENSG00000079156) #37
Orangutan	MODERN SPECIES	15	OLA1 (ENSPPYG00000012943) #9	SP9 (ENSPPYG00000033437) #10	ENSPPYG00000012945 #11	ENSPPYG00000012946 #12	GPR155 (ENSPPYG00000012947) #13	WIPF1 (ENSPPYG00000012948) #14	CHRNA1 (ENSPPYG00000012949) #15	CHN1 (ENSPPYG00000012950) #16	ATF2 (ENSPPYG00000012951) #17	ENSPPYG00000041465	ATP5MC3 (ENSPPYG00000037033)	LNPK (ENSPPYG00000032630) #18	EVX2 (ENSPPYG00000012955) #19	HOXD13 (ENSPPYG00000012956) #20	HOXD12 (ENSPPYG00000012957) #21	HOXD11 (ENSPPYG00000031598) #22	HOXD10 (ENSPPYG00000012958) #23	HOXD9 (ENSPPYG00000012959) #24	HOXD8 (ENSPPYG00000037201) #25	HOXD4 (ENSPPYG00000034536) #26	HOXD3 (ENSPPYG00000012963) #27	HOXD1 (ENSPPYG00000012964) #28	ENSPPYG00000037565	MTX2 (ENSPPYG00000012966) #29	HNRNPA3 (ENSPPYG00000012967) ##30	NFE2L2 (ENSPPYG00000012968) #31	AGPS (ENSPPYG00000012969) #32	TTC30B (ENSPPYG00000034101) ##33	TTC30A (ENSPPYG00000038583) #33	PDE11A (ENSPPYG00000012972) #34	RBM45 (ENSPPYG00000012974) #36
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00940000155099.a #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.lb #33	ENSGT00390000010116.mb #33	ENSGT00940000162151 #34	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Cebidae	ANCESTRAL SPECIES	11	ENSGT00940000155099.a #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.lb #33	ENSGT00390000010116.mb #33	ENSGT00940000162151 #34	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00940000155436.o.a.b #7	ENSGT00940000155099.a #8	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.lb #33	ENSGT00390000010116.mb #33	ENSGT00940000162151 #34	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Capuchin	MODERN SPECIES	110	SP9 (ENSCCAG00000031565) #10	CIR1 (ENSCCAG00000030492) #11	SCRN3 (ENSCCAG00000022566) #12	GPR155 (ENSCCAG00000032455) #13	WIPF1 (ENSCCAG00000012994) #14	CHRNA1 (ENSCCAG00000032209) #15	CHN1 (ENSCCAG00000027038) #16	ENSCCAG00000034541	ATF2 (ENSCCAG00000035902) #17	ENSCCAG00000020514	ENSCCAG00000015947	LNPK (ENSCCAG00000022702) #18	EVX2 (ENSCCAG00000032502) #19	HOXD13 (ENSCCAG00000032945) #20	HOXD12 (ENSCCAG00000026325) #21	HOXD11 (ENSCCAG00000034968) #22	HOXD10 (ENSCCAG00000020764) #23	HOXD9 (ENSCCAG00000021007) #24	HOXD8 (ENSCCAG00000001172) #25	ENSCCAG00000035403 #26
Marmoset	MODERN SPECIES	18	CIR1 (ENSCJAG00000007884) #11	SCRN3 (ENSCJAG00000007909) #12	GPR155 (ENSCJAG00000007947) #13	WIPF1 (ENSCJAG00000048519) #14	CHRNA1 (ENSCJAG00000008007) #15	CHN1 (ENSCJAG00000008041) #16	ATF2 (ENSCJAG00000008085) #17	ATP5MC3 (ENSCJAG00000008207)	ENSCJAG00000080703	ENSCJAG00000084464	ENSCJAG00000022954	LNPK (ENSCJAG00000008226) #18	EVX2 (ENSCJAG00000077487) #19	HOXD13 (ENSCJAG00000040882) #20	HOXD12 (ENSCJAG00000079626) #21	HOXD11 (ENSCJAG00000048503) #22	HOXD10 (ENSCJAG00000008269) #23	HOXD9 (ENSCJAG00000046789) #24	HOXD8 (ENSCJAG00000008284) #25	HOXD4 (ENSCJAG00000008286) #26	HOXD3 (ENSCJAG00000063715) #27	HOXD1 (ENSCJAG00000008290) #28	MTX2 (ENSCJAG00000039174) #29	ENSCJAG00000072603	ENSCJAG00000006928 #30	NFE2L2 (ENSCJAG00000008340) #31	ENSCJAG00000059559	ENSCJAG00000021732 #33	AGPS (ENSCJAG00000021508) #32	ENSCJAG00000081808	ENSCJAG00000081742
Mas night monkey	MODERN SPECIES	1333							ENSANAG00000011341	ENSANAG00000037338 #17	ENSANAG00000033889	ENSANAG00000023367	ENSANAG00000021797	LNPK (ENSANAG00000019161) #18	EVX2 (ENSANAG00000031929) #19	HOXD13 (ENSANAG00000029500) #20	HOXD12 (ENSANAG00000008919) #21	HOXD11 (ENSANAG00000029678) #22	HOXD10 (ENSANAG00000025381) #23	HOXD9 (ENSANAG00000024699) #24	HOXD8 (ENSANAG00000026980) #25	HOXD4 (ENSANAG00000028028) #26	HOXD3 (ENSANAG00000026428) #27	HOXD1 (ENSANAG00000019775) #28	ENSANAG00000031061	MTX2 (ENSANAG00000022501) #29	HNRNPA3 (ENSANAG00000002931) #30	NFE2L2 (ENSANAG00000023669) #31	AGPS (ENSANAG00000019626) #32	ENSANAG00000003240 #33	ENSANAG00000025414 #34
Tarsier	MODERN SPECIES	1221													EVX2 (ENSTSYG00000003728) #19	HOXD13 (ENSTSYG00000003737) #20	HOXD12 (ENSTSYG00000003740) #21	ENSTSYG00000035865 #22	HOXD10 (ENSTSYG00000002769) #23
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00940000155099 #8	ENSGT00390000000673.b.v.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Mouse lemur	MODERN SPECIES	30	ENSMICG00000007356	SP9 (ENSMICG00000031506) #10	CIR1 (ENSMICG00000026886) #11	SCRN3 (ENSMICG00000000366) #12	GPR155 (ENSMICG00000000369) #13	ENSMICG00000031974	CHRNA1 (ENSMICG00000014284) #15	ENSMICG00000038672	CHN1 (ENSMICG00000014292) #16	ATF2 (ENSMICG00000006417) #17	ATP5MC3 (ENSMICG00000006421)	LNPK (ENSMICG00000027707) #18	EVX2 (ENSMICG00000035343) #19	HOXD13 (ENSMICG00000002170) #20	HOXD12 (ENSMICG00000002172) #21	HOXD11 (ENSMICG00000048033) #22	HOXD10 (ENSMICG00000028373) #23	HOXD9 (ENSMICG00000031229) #24	HOXD8 (ENSMICG00000004277) #25	HOXD4 (ENSMICG00000043209) #26	HOXD3 (ENSMICG00000004286) #27	HOXD1 (ENSMICG00000044650) #28	MTX2 (ENSMICG00000004295) #29	ENSMICG00000027841 ##30	NFE2L2 (ENSMICG00000009559) #31	AGPS (ENSMICG00000003750) #32	ENSMICG00000003768 #33	ENSMICG00000046051 #33	ENSMICG00000030225	PDE11A (ENSMICG00000003770) #34	ENSMICG00000047030
Lemuriformes_a	ANCESTRAL SPECIES	69	ENSGT00940000155099 #8	ENSGT00390000000673.b.v.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Greater bamboo lemur	MODERN SPECIES	243	OLA1 (ENSPSMG00000024129) #9	SP9 (ENSPSMG00000024136) #10	CIR1 (ENSPSMG00000024153) #11	SCRN3 (ENSPSMG00000024170) #12	GPR155 (ENSPSMG00000024199) #13	WIPF1 (ENSPSMG00000024219) #14	CHRNA1 (ENSPSMG00000024264) #15	CHN1 (ENSPSMG00000024301) #16	ATF2 (ENSPSMG00000024416) #17	ATP5MC3 (ENSPSMG00000024446)	LNPK (ENSPSMG00000024460) #18	ENSPSMG00000024465	EVX2 (ENSPSMG00000024469) #19	HOXD13 (ENSPSMG00000024474) #20	HOXD12 (ENSPSMG00000024476) #21	HOXD11 (ENSPSMG00000024479) #22	HOXD10 (ENSPSMG00000024482) #23	HOXD9 (ENSPSMG00000024487) #24	HOXD8 (ENSPSMG00000024501) #25	HOXD4 (ENSPSMG00000024504) #26	HOXD3 (ENSPSMG00000024507) #27	ENSPSMG00000024512	HOXD1 (ENSPSMG00000024516) #28	NNT (ENSPSMG00000024528)	PAIP1 (ENSPSMG00000024554)	ENSPSMG00000024563
Coquerels sifaka	MODERN SPECIES	478	ENSPCOG00000017353 #9	SP9 (ENSPCOG00000018883) #10	CIR1 (ENSPCOG00000014298) #11	SCRN3 (ENSPCOG00000015456) #12	GPR155 (ENSPCOG00000014376) #13	ENSPCOG00000018466	ENSPCOG00000015733	CHRNA1 (ENSPCOG00000020642) #15	CHN1 (ENSPCOG00000018830) #16	ATF2 (ENSPCOG00000025416) #17	ATP5MC3 (ENSPCOG00000016374)	LNPK (ENSPCOG00000026983) #18	EVX2 (ENSPCOG00000022416) #19	HOXD13 (ENSPCOG00000018735) #20	HOXD12 (ENSPCOG00000022036) #21	HOXD11 (ENSPCOG00000015055) #22	HOXD10 (ENSPCOG00000023637) #23	HOXD9 (ENSPCOG00000026809) #24	HOXD8 (ENSPCOG00000024233) #25	HOXD4 (ENSPCOG00000018337) #26	HOXD3 (ENSPCOG00000017195) #27	HOXD1 (ENSPCOG00000024445) #28	MTX2 (ENSPCOG00000025077) #29	NFE2L2 (ENSPCOG00000007362) #31	AGPS (ENSPCOG00000018665) #32	PDE11A (ENSPCOG00000025830) #34	ENSPCOG00000025842	ENSPCOG00000028806	RBM45 (ENSPCOG00000021526) #36	ENSPCOG00000005659	OSBPL6 (ENSPCOG00000010731) #37
Bushbaby	MODERN SPECIES	163	SP9 (ENSOGAG00000034062) #10	CIR1 (ENSOGAG00000016564) #11	SCRN3 (ENSOGAG00000016569) #12	GPR155 (ENSOGAG00000016571) #13	WIPF1 (ENSOGAG00000016579) #14	CHRNA1 (ENSOGAG00000000890) #15	CHN1 (ENSOGAG00000000894) #16	ATF2 (ENSOGAG00000011373) #17	ATP5MC3 (ENSOGAG00000027578)	ENSOGAG00000026184	ENSOGAG00000030354	LNPK (ENSOGAG00000030372) #18	EVX2 (ENSOGAG00000025378) #19	HOXD13 (ENSOGAG00000027055) #20	HOXD12 (ENSOGAG00000015689) #21	HOXD11 (ENSOGAG00000029520) #22	HOXD10 (ENSOGAG00000015694) #23	HOXD9 (ENSOGAG00000015697) #24	HOXD8 (ENSOGAG00000015707) #25	HOXD4 (ENSOGAG00000029168) #26	HOXD3 (ENSOGAG00000015710) #27	HOXD1 (ENSOGAG00000015712) #28	MTX2 (ENSOGAG00000016422) #29	ENSOGAG00000032690	ENSOGAG00000028132 ##30	NFE2L2 (ENSOGAG00000034393) #31	AGPS (ENSOGAG00000013184) #32	ENSOGAG00000013189 #33	ENSOGAG00000013191	ENSOGAG00000026648	RBM45 (ENSOGAG00000015195) #36
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Glires	ANCESTRAL SPECIES	14	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000164264	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Rabbit	MODERN SPECIES	18	OLA1 (ENSOCUG00000003574) #9	ENSOCUG00000037146	CIR1 (ENSOCUG00000029298) #11	SCRN3 (ENSOCUG00000011499) #12	GPR155 (ENSOCUG00000003683) #13	ENSOCUG00000036607	ENSOCUG00000005696	CHRNA1 (ENSOCUG00000024814) #15	CHN1 (ENSOCUG00000008134) #16	ATF2 (ENSOCUG00000012156) #17	ATP5MC3 (ENSOCUG00000012164)	LNPK (ENSOCUG00000008962) #18	EVX2 (ENSOCUG00000032776) #19	HOXD13 (ENSOCUG00000029547) #20	HOXD12 (ENSOCUG00000002412) #21	HOXD11 (ENSOCUG00000013942) #22	HOXD10 (ENSOCUG00000008964) #23	HOXD9 (ENSOCUG00000023956) #24	ENSOCUG00000035940 #25	HOXD4 (ENSOCUG00000002413) #26	HOXD3 (ENSOCUG00000014119) #27	HOXD1 (ENSOCUG00000015582) #28	MTX2 (ENSOCUG00000008760) #29	ENSOCUG00000025666	ENSOCUG00000030456	ENSOCUG00000002743 #30	NFE2L2 (ENSOCUG00000001009) #31	AGPS (ENSOCUG00000011521) #32	ENSOCUG00000029884 #33	ENSOCUG00000039012 #33	ENSOCUG00000008038
Pika	MODERN SPECIES	959																ENSOPRG00000004018 #22	HOXD10 (ENSOPRG00000004038) #23	ENSOPRG00000004049 #24	HOXD8 (ENSOPRG00000004065) #25	ENSOPRG00000004081 #26	HOXD3 (ENSOPRG00000004098) #27	ENSOPRG00000004116 #28
Rodentia	ANCESTRAL SPECIES	14	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296.t #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618
Naked mole-rat female	MODERN SPECIES	22	SP9 (ENSHGLG00000007443) #10	CIR1 (ENSHGLG00000008097) #11	SCRN3 (ENSHGLG00000010172) #12	GPR155 (ENSHGLG00000012529) #13	ENSHGLG00000036822 #14	ENSHGLG00000039411 #14	CHRNA1 (ENSHGLG00000015432) #15	ENSHGLG00000016114 #16	ENSHGLG00000018805 #17	Atp5mc3 (ENSHGLG00000033165)	ENSHGLG00000040802	LNPK (ENSHGLG00000004015) #18	EVX2 (ENSHGLG00000004218) #19	HOXD13 (ENSHGLG00000050884) #20	HOXD12 (ENSHGLG00000005403) #21	HOXD11 (ENSHGLG00000034527) #22	HOXD9 (ENSHGLG00000007185) #24	HOXD10 (ENSHGLG00000033462) #23	ENSHGLG00000003577 #25	HOXD4 (ENSHGLG00000037842) #26	HOXD3 (ENSHGLG00000003761) #27	HOXD1 (ENSHGLG00000004072) #28	MTX2 (ENSHGLG00000004177) #29	ENSHGLG00000012734	ENSHGLG00000046644	ENSHGLG00000036655	HNRNPA3 (ENSHGLG00000005451) #30	NFE2L2 (ENSHGLG00000006475) #31	AGPS (ENSHGLG00000007541) #32	ENSHGLG00000036841 #33	TTC30B (ENSHGLG00000042840) #33
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296.t #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618
Guinea pig	MODERN SPECIES	3	SP3 (ENSCPOG00000002942) #8	OLA1 (ENSCPOG00000031110) #9	SP9 (ENSCPOG00000032651) #10	CIR1 (ENSCPOG00000010275) #11	SCRN3 (ENSCPOG00000010281) #12	GPR155 (ENSCPOG00000010286) #13	ENSCPOG00000034131 #14	CHRNA1 (ENSCPOG00000000036) #15	ENSCPOG00000002789 #16	ATF2 (ENSCPOG00000004637) #17	ATP5MC3 (ENSCPOG00000040161)	LNPK (ENSCPOG00000010971) #18	EVX2 (ENSCPOG00000006711) #19	HOXD13 (ENSCPOG00000006722) #20	HOXD12 (ENSCPOG00000005496) #21	ENSCPOG00000019766 #22	HOXD10 (ENSCPOG00000011368) #23	HOXD9 (ENSCPOG00000015006) #24	HOXD8 (ENSCPOG00000015005) #25	HOXD4 (ENSCPOG00000036552) #26	HOXD3 (ENSCPOG00000034932) #27	HOXD1 (ENSCPOG00000005509) #28	MTX2 (ENSCPOG00000011099) #29	ENSCPOG00000027250	ENSCPOG00000004251 #30	NFE2L2 (ENSCPOG00000031261) #31	AGPS (ENSCPOG00000000679) #32	ENSCPOG00000000681 #33	PDE11A (ENSCPOG00000000682) #34	RBM45 (ENSCPOG00000000684) #36	OSBPL6 (ENSCPOG00000002816) #37
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296.t #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618
Long-tailed chinchilla	MODERN SPECIES	110	TLR3 (ENSCLAG00000012107)	FAM149A (ENSCLAG00000017064)	CYP4V2 (ENSCLAG00000016518)	KLKB1 (ENSCLAG00000016848)	F11 (ENSCLAG00000012318)	MTNR1A (ENSCLAG00000015269)	FAT1 (ENSCLAG00000013169)	ENSCLAG00000015923	ZFP42 (ENSCLAG00000011822)	TRIML2 (ENSCLAG00000011159)	TRIML1 (ENSCLAG00000014494)	LNPK (ENSCLAG00000015033) #18	EVX2 (ENSCLAG00000014389) #19	HOXD13 (ENSCLAG00000013095) #20	HOXD12 (ENSCLAG00000013058) #21	ENSCLAG00000012563 #22	HOXD10 (ENSCLAG00000012482) #23	HOXD9 (ENSCLAG00000012447) #24	ENSCLAG00000011108 #25	HOXD4 (ENSCLAG00000014461) #26	ENSCLAG00000013605 #27	HOXD1 (ENSCLAG00000012505) #28	MTX2 (ENSCLAG00000011598) #29	ENSCLAG00000011088	HNRNPA3 (ENSCLAG00000012855) #30	NFE2L2 (ENSCLAG00000013122) #31	ENSCLAG00000012626	ENSCLAG00000013627	AGPS (ENSCLAG00000013279) #32	ENSCLAG00000017938 #33	ENSCLAG00000013714 #33
Degu	MODERN SPECIES	106	ENSODEG00000009961 #12	GPR155 (ENSODEG00000009263) #13	ENSODEG00000008878 #14	ENSODEG00000008975 #14	ENSODEG00000019598	CHRNA1 (ENSODEG00000010458) #15	CHN1 (ENSODEG00000008560) #16	ATF2 (ENSODEG00000010947) #17	ENSODEG00000010951	ENSODEG00000010385	LNPK (ENSODEG00000010046) #18	ENSODEG00000008992	EVX2 (ENSODEG00000010771) #19	HOXD13 (ENSODEG00000008793) #20	HOXD12 (ENSODEG00000008376) #21	ENSODEG00000010934 #22	HOXD10 (ENSODEG00000010382) #23	HOXD9 (ENSODEG00000008626) #24	ENSODEG00000010496 #25	HOXD4 (ENSODEG00000010297) #26	HOXD3 (ENSODEG00000009722) #27	HOXD1 (ENSODEG00000008961) #28	ENSODEG00000008879	MTX2 (ENSODEG00000008062) #29	ENSODEG00000009697	ENSODEG00000009265	NFE2L2 (ENSODEG00000010043) #31	AGPS (ENSODEG00000008272) #32	ENSODEG00000020058 #33	ENSODEG00000019592 #33	PDE11A (ENSODEG00000010682) #34
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.xb	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005002643	SP9 (ENSSVLG00005002657) #10	CIR1 (ENSSVLG00005002678) #11	SCRN3 (ENSSVLG00005002703) #12	GPR155 (ENSSVLG00005002750) #13	WIPF1 (ENSSVLG00005002786) #14	CHRNA1 (ENSSVLG00005002856) #15	CHN1 (ENSSVLG00005003041) #16	ENSSVLG00005003279 #17	ENSSVLG00005003430	ENSSVLG00005003466	LNPK (ENSSVLG00005003500) #18	EVX2 (ENSSVLG00005003539) #19	HOXD13 (ENSSVLG00005003554) #20	HOXD12 (ENSSVLG00005003565) #21	HOXD11 (ENSSVLG00005003581) #22	HOXD10 (ENSSVLG00005003599) #23	HOXD9 (ENSSVLG00005003618) #24	HOXD8 (ENSSVLG00005003645) #25	HOXD4 (ENSSVLG00005003676) #26	HOXD1 (ENSSVLG00005003762) #28	MTX2 (ENSSVLG00005003812) #29	ENSSVLG00005003881 #30	ENSSVLG00005003903 #31	AGPS (ENSSVLG00005003959) #32	ENSSVLG00005003996 #33	ENSSVLG00005004006 #33	ENSSVLG00005004018 #33	PDE11A (ENSSVLG00005004050) #34	ENSSVLG00005004113	RBM45 (ENSSVLG00005004137) #36
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.xb.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.gb #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.xb.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.gb #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Arctic ground squirrel	MODERN SPECIES	323							WIPF1 (ENSUPAG00010020649) #14	CHRNA1 (ENSUPAG00010020641) #15	CHN1 (ENSUPAG00010020575) #16	ATF2 (ENSUPAG00010020491) #17	ENSUPAG00010020485	LNPK (ENSUPAG00010020452) #18	EVX2 (ENSUPAG00010020442) #19	HOXD13 (ENSUPAG00010020441) #20	HOXD12 (ENSUPAG00010020440) #21	HOXD11 (ENSUPAG00010020439) #22	HOXD10 (ENSUPAG00010020434) #23	HOXD9 (ENSUPAG00010020431) #24	HOXD8 (ENSUPAG00010020425) #25	HOXD4 (ENSUPAG00010020416) #26	HOXD3 (ENSUPAG00010020410) #27	HOXD1 (ENSUPAG00010020407) #28	ENSUPAG00010020400	MTX2 (ENSUPAG00010020394) #29
Alpin marmot	MODERN SPECIES	5	OLA1 (ENSMMMG00000023695) #9	CIR1 (ENSMMMG00000023697) #11	ENSMMMG00000023700 #12	ENSMMMG00000023702 #12	GPR155 (ENSMMMG00000023705) #13	ENSMMMG00000023714	WIPF1 (ENSMMMG00000023716) #14	CHRNA1 (ENSMMMG00000023717) #15	CHN1 (ENSMMMG00000023718) #16	ENSMMMG00000023730	ATF2 (ENSMMMG00000023733) #17	ENSMMMG00000023748	LNPK (ENSMMMG00000023755) #18	HOXD13 (ENSMMMG00000023759) #20	HOXD12 (ENSMMMG00000023760) #21	ENSMMMG00000023762 #22	HOXD10 (ENSMMMG00000023763) #23	HOXD9 (ENSMMMG00000023764) #24	ENSMMMG00000023765 #25	HOXD4 (ENSMMMG00000023767) #26	HOXD3 (ENSMMMG00000023768) #27	MTX2 (ENSMMMG00000023772) #29	NFE2L2 (ENSMMMG00000023776) #31	AGPS (ENSMMMG00000023778) #32
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Kangaroo rat	MODERN SPECIES	324	Cdca7 (ENSDORG00000001759) #7	Sp3 (ENSDORG00000009045) #8	ENSDORG00000008681 #9	Sp9 (ENSDORG00000025534) #10	Cir1 (ENSDORG00000013676) #11	ENSDORG00000013682 #12	Gpr155 (ENSDORG00000013683) #13	ENSDORG00000027952 #14	Chrna1 (ENSDORG00000001136) #15	Chn1 (ENSDORG00000002182) #16	Atf2 (ENSDORG00000024409) #17	Atp5g3 (ENSDORG00000012973)	Lnpk (ENSDORG00000015736) #18	Evx2 (ENSDORG00000009432) #19	Hoxd12 (ENSDORG00000009434) #21	ENSDORG00000029219 #22	Hoxd10 (ENSDORG00000009436) #23	ENSDORG00000027655 #25	Hoxd4 (ENSDORG00000028681) #26	Hoxd3 (ENSDORG00000029389) #27	Hoxd1 (ENSDORG00000009445) #28	Mtx2 (ENSDORG00000003848) #29	Hnrnpa3 (ENSDORG00000011155) #30	Nfe2l2 (ENSDORG00000030173) #31	Agps (ENSDORG00000006480) #32	ENSDORG00000028567 #33	ENSDORG00000028697 #33	ENSDORG00000023150 #33	Cyct (ENSDORG00000004101)	Rbm45 (ENSDORG00000015831) #36	Osbpl6 (ENSDORG00000001912) #37
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Lesser Egyptian jerboa	MODERN SPECIES	75	Sp3 (ENSJJAG00000011138) #8	ENSJJAG00000022958 #9	Sp9 (ENSJJAG00000020056) #10	Cir1 (ENSJJAG00000010849) #11	Scrn3 (ENSJJAG00000021027) #12	Chrna1 (ENSJJAG00000018710) #15	ENSJJAG00000014124	Chn1 (ENSJJAG00000015001) #16	Atf2 (ENSJJAG00000015836) #17	Atp5g3 (ENSJJAG00000022403)	ENSJJAG00000013766	Lnpk (ENSJJAG00000011710) #18	Evx2 (ENSJJAG00000017484) #19	Hoxd13 (ENSJJAG00000016388) #20	Hoxd12 (ENSJJAG00000016261) #21	Hoxd11 (ENSJJAG00000012344) #22	Hoxd10 (ENSJJAG00000011932) #23	Hoxd1 (ENSJJAG00000019059) #28	ENSJJAG00000019952	ENSJJAG00000013228 #29	ENSJJAG00000000149 #30	Nfe2l2 (ENSJJAG00000019899) #31	Agps (ENSJJAG00000016720) #32	ENSJJAG00000014867 #33	ENSJJAG00000012087 #33	Pde11a (ENSJJAG00000018583) #34	Rbm45 (ENSJJAG00000001312) #36	Osbpl6 (ENSJJAG00000017863) #37	Prkra (ENSJJAG00000013031)	Pjvk (ENSJJAG00000012900)	Fkbp7 (ENSJJAG00000012221)
Muroidea	ANCESTRAL SPECIES	34	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.y.b #33	ENSGT00390000010116.y.a #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1735	ENSNGAG00000012551	Ola1 (ENSNGAG00000017639) #9	Sp9 (ENSNGAG00000002858) #10	Cir1 (ENSNGAG00000023091) #11	Scrn3 (ENSNGAG00000008783) #12	Gpr155 (ENSNGAG00000019246) #13	ENSNGAG00000022478 #14	Chrna1 (ENSNGAG00000023534) #15	Chn1 (ENSNGAG00000021893) #16	Atf2 (ENSNGAG00000003870) #17	Atp5g3 (ENSNGAG00000004748)	Lnpk (ENSNGAG00000023466) #18	Evx2 (ENSNGAG00000023877) #19	Hoxd13 (ENSNGAG00000023727) #20	Hoxd12 (ENSNGAG00000023455) #21	Hoxd11 (ENSNGAG00000023438) #22	Hoxd10 (ENSNGAG00000023868) #23	Hoxd9 (ENSNGAG00000011105) #24	Hoxd8 (ENSNGAG00000011799) #25	Hoxd4 (ENSNGAG00000020270) #26	Hoxd3 (ENSNGAG00000021055) #27	Hoxd1 (ENSNGAG00000021714) #28	Mtx2 (ENSNGAG00000020555) #29	ENSNGAG00000021745 ##30	Nfe2l2 (ENSNGAG00000022809) #31	Agps (ENSNGAG00000020263) #32	ENSNGAG00000022555 #33	Pde11a (ENSNGAG00000023493) #34	Cyct (ENSNGAG00000023547)	ENSNGAG00000021016	Rbm45 (ENSNGAG00000023886) #36
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.y.b #33	ENSGT00390000010116.y.a.a #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.y.b #33	ENSGT00390000010116.y.a.b #33	ENSGT00390000010116.y.a.a #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a
Mus	ANCESTRAL SPECIES	1	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #30	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.y.b #33	ENSGT00390000010116.y.a.b #33	ENSGT00390000010116.y.a.a #33	ENSGT00940000162151 #34
Mus_A	ANCESTRAL SPECIES		ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #30	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.y.b #33	ENSGT00390000010116.y.a.b #33	ENSGT00390000010116.y.a.a #33	ENSGT00940000162151 #34
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.y.b #33	ENSGT00390000010116.y.a.b #33	ENSGT00390000010116.y.a.a #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a
Mouse	MODERN SPECIES	11	Sp3 (ENSMUSG00000027109) #8	Ola1 (ENSMUSG00000027108) #9	Sp9 (ENSMUSG00000068859) #10	Cir1 (ENSMUSG00000041777) #11	Scrn3 (ENSMUSG00000008226) #12	Gpr155 (ENSMUSG00000041762) #13	Wipf1 (ENSMUSG00000075284) #14	Chrna1 (ENSMUSG00000027107) #15	Chn1 (ENSMUSG00000056486) #16	Atf2 (ENSMUSG00000027104) #17	Atp5g3 (ENSMUSG00000018770)	Lnpk (ENSMUSG00000009207) #18	Evx2 (ENSMUSG00000001815) #19	Hoxd13 (ENSMUSG00000001819) #20	Hoxd12 (ENSMUSG00000001823) #21	Hoxd11 (ENSMUSG00000042499) #22	Hoxd10 (ENSMUSG00000050368) #23	Hoxd9 (ENSMUSG00000043342) #24	Hoxd8 (ENSMUSG00000027102) #25	Hoxd3 (ENSMUSG00000079277) #27	Hoxd4 (ENSMUSG00000101174) #26	Hoxd1 (ENSMUSG00000042448) #28	Mtx2 (ENSMUSG00000027099) #29	Hnrnpa3 (ENSMUSG00000059005) #30	Nfe2l2 (ENSMUSG00000015839) #31	Agps (ENSMUSG00000042410) #32	Ttc30b (ENSMUSG00000075273) #33	Ttc30a2 (ENSMUSG00000075272) #33	Ttc30a1 (ENSMUSG00000075271) #33	Pde11a (ENSMUSG00000075270) #34	Cyct (ENSMUSG00000056436)
Mus_C	ANCESTRAL SPECIES		ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.b ##30	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.y.b #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Steppe mouse	MODERN SPECIES	3326	Sp9 (ENSMSIG00000007182) #10	Cir1 (ENSMSIG00000007130) #11	Scrn3 (ENSMSIG00000007111) #12	Gpr155 (ENSMSIG00000006975) #13	Wipf1 (ENSMSIG00000006899) #14	Chrna1 (ENSMSIG00000006852) #15	Chn1 (ENSMSIG00000006692) #16	ENSMSIG00000006659	Atf2 (ENSMSIG00000006546) #17	Atp5g3 (ENSMSIG00000006512)	ENSMSIG00000006495	Lnpk (ENSMSIG00000006386) #18	Evx2 (ENSMSIG00000006361) #19	Hoxd13 (ENSMSIG00000006348) #20	Hoxd12 (ENSMSIG00000006333) #21	Hoxd11 (ENSMSIG00000006326) #22	Hoxd10 (ENSMSIG00000006313) #23	Hoxd9 (ENSMSIG00000006304) #24	Hoxd8 (ENSMSIG00000006283) #25	ENSMSIG00000006186 #26	Hoxd3 (ENSMSIG00000006158) #27	Hoxd1 (ENSMSIG00000006137) #28	Mtx2 (ENSMSIG00000006053) #29	ENSMSIG00000006005	ENSMSIG00000005981	ENSMSIG00000005709 #30	Nfe2l2 (ENSMSIG00000005673) #31
spretus	MODERN SPECIES	11	MGP_SPRETEiJ_G0024577	Ola1 (MGP_SPRETEiJ_G0024578) #9	Sp9 (MGP_SPRETEiJ_G0024579) #10	Cir1 (MGP_SPRETEiJ_G0024580) #11	Scrn3 (MGP_SPRETEiJ_G0024581) #12	Gpr155 (MGP_SPRETEiJ_G0024582) #13	Wipf1 (MGP_SPRETEiJ_G0024583) #14	Chrna1 (MGP_SPRETEiJ_G0024584) #15	Chn1 (MGP_SPRETEiJ_G0024585) #16	Atf2 (MGP_SPRETEiJ_G0024586) #17	Atp5g3 (MGP_SPRETEiJ_G0024587)	Lnpk (MGP_SPRETEiJ_G0024588) #18	Evx2 (MGP_SPRETEiJ_G0024589) #19	Hoxd13 (MGP_SPRETEiJ_G0024590) #20	Hoxd12 (MGP_SPRETEiJ_G0024591) #21	Hoxd11 (MGP_SPRETEiJ_G0024592) #22	Hoxd10 (MGP_SPRETEiJ_G0024593) #23	Hoxd9 (MGP_SPRETEiJ_G0024594) #24	Hoxd8 (MGP_SPRETEiJ_G0024595) #25	Hoxd3 (MGP_SPRETEiJ_G0024596) #27	Hoxd4 (MGP_SPRETEiJ_G0024597) #26	MGP_SPRETEiJ_G0024598 #26	Hoxd1 (MGP_SPRETEiJ_G0024599) #28	Mtx2 (MGP_SPRETEiJ_G0024600) #29	MGP_SPRETEiJ_G0024601 ##30	Nfe2l2 (MGP_SPRETEiJ_G0024602) #31	Agps (MGP_SPRETEiJ_G0024603) #32	MGP_SPRETEiJ_G0024604 #33	Pde11a (MGP_SPRETEiJ_G0024605) #34	Cyct (MGP_SPRETEiJ_G0024606)	Rbm45 (MGP_SPRETEiJ_G0024607) #36
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0023654	Ola1 (MGP_CAROLIEiJ_G0023655) #9	Sp9 (MGP_CAROLIEiJ_G0023656) #10	Cir1 (MGP_CAROLIEiJ_G0023657) #11	Scrn3 (MGP_CAROLIEiJ_G0023658) #12	Gpr155 (MGP_CAROLIEiJ_G0023659) #13	Wipf1 (MGP_CAROLIEiJ_G0023660) #14	Chrna1 (MGP_CAROLIEiJ_G0023661) #15	Chn1 (MGP_CAROLIEiJ_G0023662) #16	Atf2 (MGP_CAROLIEiJ_G0023663) #17	Atp5g3 (MGP_CAROLIEiJ_G0023664)	Lnpk (MGP_CAROLIEiJ_G0023665) #18	Evx2 (MGP_CAROLIEiJ_G0023666) #19	Hoxd13 (MGP_CAROLIEiJ_G0023667) #20	Hoxd12 (MGP_CAROLIEiJ_G0023668) #21	Hoxd11 (MGP_CAROLIEiJ_G0023669) #22	Hoxd10 (MGP_CAROLIEiJ_G0023670) #23	Hoxd9 (MGP_CAROLIEiJ_G0023671) #24	Hoxd8 (MGP_CAROLIEiJ_G0023672) #25	Hoxd3 (MGP_CAROLIEiJ_G0023673) #27	Hoxd4 (MGP_CAROLIEiJ_G0023674) #26	MGP_CAROLIEiJ_G0023675 #26	Hoxd1 (MGP_CAROLIEiJ_G0023676) #28	Mtx2 (MGP_CAROLIEiJ_G0023677) #29	MGP_CAROLIEiJ_G0023678 #30	Nfe2l2 (MGP_CAROLIEiJ_G0023679) #31	Agps (MGP_CAROLIEiJ_G0023680) #32	MGP_CAROLIEiJ_G0023681 #33	MGP_CAROLIEiJ_G0023682 #33	Pde11a (MGP_CAROLIEiJ_G0023683) #34	MGP_CAROLIEiJ_G0023684
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025106	Ola1 (MGP_PahariEiJ_G0025107) #9	Sp9 (MGP_PahariEiJ_G0025108) #10	MGP_PahariEiJ_G0025109 #11	Scrn3 (MGP_PahariEiJ_G0025110) #12	Gpr155 (MGP_PahariEiJ_G0025111) #13	Wipf1 (MGP_PahariEiJ_G0025112) #14	Chrna1 (MGP_PahariEiJ_G0025113) #15	MGP_PahariEiJ_G0025114 #16	Atf2 (MGP_PahariEiJ_G0025115) #17	Atp5g3 (MGP_PahariEiJ_G0025116)	Lnpk (MGP_PahariEiJ_G0025117) #18	Evx2 (MGP_PahariEiJ_G0025118) #19	Hoxd13 (MGP_PahariEiJ_G0025119) #20	Hoxd12 (MGP_PahariEiJ_G0025120) #21	Hoxd11 (MGP_PahariEiJ_G0025121) #22	Hoxd10 (MGP_PahariEiJ_G0025122) #23	Hoxd9 (MGP_PahariEiJ_G0025123) #24	Hoxd8 (MGP_PahariEiJ_G0025124) #25	Hoxd3 (MGP_PahariEiJ_G0025125) #27	Hoxd4 (MGP_PahariEiJ_G0025126) #26	MGP_PahariEiJ_G0025127 #26	Hoxd1 (MGP_PahariEiJ_G0025128) #28	Mtx2 (MGP_PahariEiJ_G0025129) #29	Hnrnpa3 (MGP_PahariEiJ_G0025130) #30	Nfe2l2 (MGP_PahariEiJ_G0025131) #31	MGP_PahariEiJ_G0025132 #32	MGP_PahariEiJ_G0025133 #33	MGP_PahariEiJ_G0025134 #33	Pde11a (MGP_PahariEiJ_G0025135) #34	Cyct (MGP_PahariEiJ_G0025136)
Rat	MODERN SPECIES	13	Sp9 (ENSRNOG00000028187) #10	Cir1 (ENSRNOG00000018719) #11	Scrn3 (ENSRNOG00000018657) #12	Gpr155 (ENSRNOG00000018485) #13	Wipf1 (ENSRNOG00000018406) #14	Rbx1-ps2 (ENSRNOG00000067031)	Chrna1 (ENSRNOG00000018286) #15	Chn1 (ENSRNOG00000017939) #16	ENSRNOG00000068403	Atf2 (ENSRNOG00000001597) #17	Atp5mc3 (ENSRNOG00000001596)	Lnpk (ENSRNOG00000001593) #18	Evx2 (ENSRNOG00000001589) #19	Hoxd13 (ENSRNOG00000001588) #20	Hoxd12 (ENSRNOG00000001587) #21	Hoxd11 (ENSRNOG00000069591) #22	Hoxd10 (ENSRNOG00000001581) #23	Hoxd9 (ENSRNOG00000001580) #24	Hoxd8 (ENSRNOG00000071108) #25	Hoxd4 (ENSRNOG00000001578) #26	AABR07052559.1 (ENSRNOG00000053144)	Hoxd3 (ENSRNOG00000001577) #27	Hoxd1 (ENSRNOG00000001572) #28	Mtx2 (ENSRNOG00000001559) #29	Hnrnpa3 (ENSRNOG00000052968) #30	Nfe2l2 (ENSRNOG00000001548) #31	ENSRNOG00000066660	Agps (ENSRNOG00000001547) #32	Ttc30b (ENSRNOG00000059460) #33	Ttc30a1 (ENSRNOG00000052519) #33	Ttc30a (ENSRNOG00000069321) #33
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.y.b #33	ENSGT00390000010116.y.a.a #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.p #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.y.b #33	ENSGT00390000010116.y.a.a #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Prairie vole	MODERN SPECIES	12	ENSMOCG00000003269	ENSMOCG00000003125 #9	Sp9 (ENSMOCG00000019136) #10	Cir1 (ENSMOCG00000017545) #11	Scrn3 (ENSMOCG00000018966) #12	Gpr155 (ENSMOCG00000003950) #13	ENSMOCG00000014660	Chrna1 (ENSMOCG00000020367) #15	Chn1 (ENSMOCG00000005574) #16	Atf2 (ENSMOCG00000015301) #17	ENSMOCG00000012786	Lnpk (ENSMOCG00000022345) #18	Evx2 (ENSMOCG00000010466) #19	Hoxd13 (ENSMOCG00000014618) #20	Hoxd12 (ENSMOCG00000018953) #21	Hoxd11 (ENSMOCG00000019226) #22	Hoxd10 (ENSMOCG00000006052) #23	Hoxd9 (ENSMOCG00000005870) #24	Hoxd8 (ENSMOCG00000022746) #25	Hoxd3 (ENSMOCG00000022552) #27	Hoxd4 (ENSMOCG00000013646) #26	Hoxd1 (ENSMOCG00000014086) #28	Mtx2 (ENSMOCG00000017110) #29	ENSMOCG00000019409 ##30	Nfe2l2 (ENSMOCG00000020760) #31	Agps (ENSMOCG00000017476) #32	Ttc30b (ENSMOCG00000001580) #33	ENSMOCG00000001098	Ttc30a2 (ENSMOCG00000002802) #33	Pde11a (ENSMOCG00000005959) #34	Cyct (ENSMOCG00000021506)
Northern American deer mouse	MODERN SPECIES	17	Ola1 (ENSPEMG00000021970) #9	Sp9 (ENSPEMG00000029035) #10	Cir1 (ENSPEMG00000022223) #11	Scrn3 (ENSPEMG00000022424) #12	Gpr155 (ENSPEMG00000022602) #13	Wipf1 (ENSPEMG00000013848) #14	Chrna1 (ENSPEMG00000012571) #15	Chn1 (ENSPEMG00000022535) #16	Atf2 (ENSPEMG00000021625) #17	Atp5g3 (ENSPEMG00000023766)	ENSPEMG00000008662	Lnpk (ENSPEMG00000017827) #18	Evx2 (ENSPEMG00000022145) #19	Hoxd13 (ENSPEMG00000022412) #20	Hoxd12 (ENSPEMG00000019240) #21	ENSPEMG00000018816 #22	Hoxd10 (ENSPEMG00000030445) #23	Hoxd9 (ENSPEMG00000006162) #24	ENSPEMG00000028623 #25	ENSPEMG00000029322	Hoxd4 (ENSPEMG00000024627) #26	Hoxd3 (ENSPEMG00000028862) #27	Hoxd1 (ENSPEMG00000021389) #28	Mtx2 (ENSPEMG00000022093) #29	Hnrnpa3 (ENSPEMG00000021885) #30	Nfe2l2 (ENSPEMG00000023181) #31	Agps (ENSPEMG00000010561) #32	ENSPEMG00000023662	Ttc30b (ENSPEMG00000001902) #33	Ttc30a1 (ENSPEMG00000025624) #33	Pde11a (ENSPEMG00000021597) #34
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000155436 #7	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000171387	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000154808.a.a	ENSGT00940000153147.m.a.a.a.b.a.b.p #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.y.b #33	ENSGT00390000010116.y.a.a #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a
Chinese hamster chok1gshd	MODERN SPECIES	188	Sp9 (ENSCGRG00001024896) #10	Cir1 (ENSCGRG00001015518) #11	Scrn3 (ENSCGRG00001014709) #12	Gpr155 (ENSCGRG00001014219) #13	ENSCGRG00001021853	Chrna1 (ENSCGRG00001020291) #15	ENSCGRG00001019803	Chn1 (ENSCGRG00001019152) #16	Atf2 (ENSCGRG00001015584) #17	Atp5g3 (ENSCGRG00001012041)	Lnpk (ENSCGRG00001011515) #18	ENSCGRG00001006802	Evx2 (ENSCGRG00001003649) #19	Hoxd13 (ENSCGRG00001001661) #20	Hoxd12 (ENSCGRG00001000877) #21	Hoxd11 (ENSCGRG00001010386) #22	Hoxd10 (ENSCGRG00001008302) #23	Hoxd9 (ENSCGRG00001005991) #24	Hoxd8 (ENSCGRG00001013130) #25	Hoxd4 (ENSCGRG00001012360) #26	Hoxd3 (ENSCGRG00001011863) #27	Hoxd1 (ENSCGRG00001011572) #28	ENSCGRG00001014512	Mtx2 (ENSCGRG00001014247) #29	ENSCGRG00001003235	ENSCGRG00001008592 #30	Nfe2l2 (ENSCGRG00001005715) #31	Agps (ENSCGRG00001003863) #32	Ttc30b (ENSCGRG00001002157) #33	Ttc30a1 (ENSCGRG00001000892) #33	ENSCGRG00001003072
Golden Hamster	MODERN SPECIES	618	Ola1 (ENSMAUG00000019168) #9	Sp9 (ENSMAUG00000020520) #10	ENSMAUG00000019383 #11	Scrn3 (ENSMAUG00000020703) #12	Gpr155 (ENSMAUG00000019481) #13	ENSMAUG00000019796	Chrna1 (ENSMAUG00000017924) #15	Chn1 (ENSMAUG00000018455) #16	Atf2 (ENSMAUG00000018366) #17	Atp5g3 (ENSMAUG00000017685)	ENSMAUG00000020495	Lnpk (ENSMAUG00000018821) #18	Evx2 (ENSMAUG00000020383) #19	Hoxd13 (ENSMAUG00000017185) #20	Hoxd12 (ENSMAUG00000018416) #21	ENSMAUG00000020249 #22	Hoxd10 (ENSMAUG00000016731) #23	Hoxd9 (ENSMAUG00000018538) #24	Hoxd8 (ENSMAUG00000018092) #25	Hoxd4 (ENSMAUG00000018545) #26	Hoxd3 (ENSMAUG00000018318) #27	Hoxd1 (ENSMAUG00000018401) #28	Mtx2 (ENSMAUG00000017870) #29	ENSMAUG00000017462	Nfe2l2 (ENSMAUG00000017700) #31	Agps (ENSMAUG00000017317) #32	Pde11a (ENSMAUG00000021257) #34	Cyct (ENSMAUG00000016722)	Rbm45 (ENSMAUG00000016948) #36	Osbpl6 (ENSMAUG00000018609) #37	Prkra (ENSMAUG00000019631)
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Carnivora	ANCESTRAL SPECIES	17	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Felidae	ANCESTRAL SPECIES	15	ENSGT00390000000673.b.mb.a #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.vb #33	ENSGT00390000010116.wb #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Panthera	ANCESTRAL SPECIES	9	ENSGT00390000000673.b.mb.a #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.vb #33	ENSGT00390000010116.wb #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00390000000673.b.mb.a #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.vb #33	ENSGT00390000010116.wb #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
lion	MODERN SPECIES	8	ENSPLOG00000022440	CIR1 (ENSPLOG00000022436) #11	SCRN3 (ENSPLOG00000022426) #12	GPR155 (ENSPLOG00000022420) #13	ENSPLOG00000022404	ENSPLOG00000022399	WIPF1 (ENSPLOG00000022385) #14	CHRNA1 (ENSPLOG00000022353) #15	CHN1 (ENSPLOG00000022311) #16	ATF2 (ENSPLOG00000022276) #17	ATP5MC3 (ENSPLOG00000022249)	LNPK (ENSPLOG00000022229) #18	EVX2 (ENSPLOG00000022219) #19	HOXD13 (ENSPLOG00000022213) #20	HOXD12 (ENSPLOG00000022207) #21	HOXD11 (ENSPLOG00000022202) #22	HOXD10 (ENSPLOG00000022198) #23	HOXD9 (ENSPLOG00000022195) #24	HOXD8 (ENSPLOG00000022192) #25	HOXD4 (ENSPLOG00000022180) #26	HOXD3 (ENSPLOG00000022176) #27	HOXD1 (ENSPLOG00000022171) #28	MTX2 (ENSPLOG00000022148) #29	ENSPLOG00000022134 #30	NFE2L2 (ENSPLOG00000022123) #31	AGPS (ENSPLOG00000022055) #32	ENSPLOG00000022046 #33	ENSPLOG00000022045 #33	PDE11A (ENSPLOG00000022012) #34	RBM45 (ENSPLOG00000021986) #36	OSBPL6 (ENSPLOG00000021601) #37
leopard	MODERN SPECIES	1	ENSPPRG00000004233 #9	SP9 (ENSPPRG00000003658) #10	CIR1 (ENSPPRG00000003553) #11	SCRN3 (ENSPPRG00000003477) #12	GPR155 (ENSPPRG00000003324) #13	ENSPPRG00000002818	WIPF1 (ENSPPRG00000002779) #14	CHRNA1 (ENSPPRG00000002357) #15	CHN1 (ENSPPRG00000001854) #16	ATF2 (ENSPPRG00000001271) #17	ATP5MC3 (ENSPPRG00000000490)	LNPK (ENSPPRG00000000436) #18	EVX2 (ENSPPRG00000000389) #19	HOXD13 (ENSPPRG00000000349) #20	HOXD12 (ENSPPRG00000000300) #21	HOXD11 (ENSPPRG00000000168) #22	HOXD10 (ENSPPRG00000000139) #23	HOXD9 (ENSPPRG00000000084) #24	HOXD8 (ENSPPRG00000022672) #25	HOXD4 (ENSPPRG00000022845) #26	HOXD3 (ENSPPRG00000022847) #27	HOXD1 (ENSPPRG00000023009) #28	MTX2 (ENSPPRG00000022475) #29	ENSPPRG00000022322 #30	NFE2L2 (ENSPPRG00000020872) #31	AGPS (ENSPPRG00000020328) #32	ENSPPRG00000021116 #33	ENSPPRG00000021101 #33	PDE11A (ENSPPRG00000019135) #34	ENSPPRG00000017216	RBM45 (ENSPPRG00000017073) #36
Cat	MODERN SPECIES	239	ENSFCAG00000036661 #9	SP9 (ENSFCAG00000044908) #10	CIR1 (ENSFCAG00000022845) #11	SCRN3 (ENSFCAG00000022042) #12	GPR155 (ENSFCAG00000000439) #13	ENSFCAG00000034843	WIPF1 (ENSFCAG00000014400) #14	CHRNA1 (ENSFCAG00000014103) #15	CHN1 (ENSFCAG00000039893) #16	ATF2 (ENSFCAG00000027595) #17	ATP5MC3 (ENSFCAG00000012719)	LNPK (ENSFCAG00000033171) #18	EVX2 (ENSFCAG00000023892) #19	HOXD13 (ENSFCAG00000030694) #20	HOXD12 (ENSFCAG00000044671) #21	HOXD11 (ENSFCAG00000030594) #22	HOXD10 (ENSFCAG00000006264) #23	HOXD9 (ENSFCAG00000035038) #24	HOXD8 (ENSFCAG00000034788) #25	HOXD4 (ENSFCAG00000045772) #26	HOXD3 (ENSFCAG00000022371) #27	HOXD1 (ENSFCAG00000042171) #28	MTX2 (ENSFCAG00000030099) #29	HNRNPA3 (ENSFCAG00000012146) #30	NFE2L2 (ENSFCAG00000012147) #31	AGPS (ENSFCAG00000022316) #32	ENSFCAG00000048732 #33	ENSFCAG00000049217 #33	PDE11A (ENSFCAG00000022207) #34	RBM45 (ENSFCAG00000018793) #36	OSBPL6 (ENSFCAG00000012535) #37
Caniformia	ANCESTRAL SPECIES	14	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Mustelinae	ANCESTRAL SPECIES	21	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Ferret	MODERN SPECIES	359	SP9 (ENSMPUG00000013931) #10	ENSMPUG00000013934	ENSMPUG00000013940	ENSMPUG00000013943 #11	SCRN3 (ENSMPUG00000013961) #12	GPR155 (ENSMPUG00000013963) #13	ENSMPUG00000013967	CHRNA1 (ENSMPUG00000013974) #15	CHN1 (ENSMPUG00000013977) #16	ATF2 (ENSMPUG00000013983) #17	ATP5MC3 (ENSMPUG00000013986)	LNPK (ENSMPUG00000014007) #18	EVX2 (ENSMPUG00000014012) #19	HOXD13 (ENSMPUG00000014022) #20	HOXD12 (ENSMPUG00000014025) #21	HOXD11 (ENSMPUG00000014029) #22	HOXD10 (ENSMPUG00000014049) #23	HOXD9 (ENSMPUG00000014053) #24	ENSMPUG00000014060 #25	ENSMPUG00000014067	HOXD4 (ENSMPUG00000014070) #26	HOXD3 (ENSMPUG00000014072) #27	ENSMPUG00000014080	HOXD1 (ENSMPUG00000014084) #28	ENSMPUG00000014088	MTX2 (ENSMPUG00000014094) #29	ENSMPUG00000014101	ENSMPUG00000014103 ##30	ENSMPUG00000014168 #31	ENSMPUG00000014172	AGPS (ENSMPUG00000014173) #32
American mink	MODERN SPECIES	222												LNPK (ENSNVIG00000007208) #18	EVX2 (ENSNVIG00000007198) #19	HOXD13 (ENSNVIG00000007186) #20	HOXD12 (ENSNVIG00000007175) #21	ENSNVIG00000007170 #22	HOXD10 (ENSNVIG00000007162) #23	HOXD9 (ENSNVIG00000007158) #24	ENSNVIG00000007149 #25	HOXD4 (ENSNVIG00000007138) #26	HOXD3 (ENSNVIG00000007128) #27	HOXD1 (ENSNVIG00000007113) #28	MTX2 (ENSNVIG00000007075) #29	HNRNPA3 (ENSNVIG00000007022) #30	NFE2L2 (ENSNVIG00000006995) #31	AGPS (ENSNVIG00000006950) #32	ENSNVIG00000006929	PDE11A (ENSNVIG00000006854) #34	ENSNVIG00000006839	RBM45 (ENSNVIG00000006823) #36	OSBPL6 (ENSNVIG00000006388) #37
Ursidae	ANCESTRAL SPECIES	7	ENSGT00390000005254.i.a.b	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.m.b	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.b ##30	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Giant Panda	MODERN SPECIES	11	ENSAMEG00000025792	SP9 (ENSAMEG00000028382) #10	CIR1 (ENSAMEG00000012211) #11	SCRN3 (ENSAMEG00000012230) #12	GPR155 (ENSAMEG00000012251) #13	ENSAMEG00000027164	WIPF1 (ENSAMEG00000012269) #14	CHRNA1 (ENSAMEG00000012277) #15	CHN1 (ENSAMEG00000012304) #16	ATF2 (ENSAMEG00000012333) #17	ATP5MC3 (ENSAMEG00000012367)	LNPK (ENSAMEG00000001869) #18	EVX2 (ENSAMEG00000001868) #19	HOXD13 (ENSAMEG00000001865) #20	HOXD12 (ENSAMEG00000023609) #21	ENSAMEG00000025193 #22	HOXD10 (ENSAMEG00000001849) #23	HOXD9 (ENSAMEG00000029987) #24	HOXD8 (ENSAMEG00000023565) #25	HOXD4 (ENSAMEG00000025663) #26	HOXD3 (ENSAMEG00000026957) #27	HOXD1 (ENSAMEG00000028345) #28	MTX2 (ENSAMEG00000001799) #29	ENSAMEG00000019906	HNRNPA3 (ENSAMEG00000011920) #30	NFE2L2 (ENSAMEG00000011937) #31	AGPS (ENSAMEG00000011950) #32	PDE11A (ENSAMEG00000000902) #34	ENSAMEG00000023664	RBM45 (ENSAMEG00000000896) #36	OSBPL6 (ENSAMEG00000000825) #37
Ursus	ANCESTRAL SPECIES	4	ENSGT00390000005254.i.a.b	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.m.b	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.b ##30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
American black bear	MODERN SPECIES	3042													EVX2 (ENSUAMG00000025680) #19	HOXD13 (ENSUAMG00000025683) #20	HOXD12 (ENSUAMG00000025684) #21	HOXD11 (ENSUAMG00000025686) #22	HOXD10 (ENSUAMG00000025688) #23	HOXD9 (ENSUAMG00000025690) #24	HOXD8 (ENSUAMG00000025693) #25	HOXD4 (ENSUAMG00000025697) #26	HOXD3 (ENSUAMG00000025698) #27	HOXD1 (ENSUAMG00000025700) #28
Polar bear	MODERN SPECIES	142	CDCA7 (ENSUMAG00000015367) #7	ENSUMAG00000015375	SP3 (ENSUMAG00000015395) #8	OLA1 (ENSUMAG00000015410) #9	ENSUMAG00000015413	CIR1 (ENSUMAG00000015415) #11	SCRN3 (ENSUMAG00000015422) #12	GPR155 (ENSUMAG00000015425) #13	ENSUMAG00000015461	ENSUMAG00000015473	CHRNA1 (ENSUMAG00000015480) #15	CHN1 (ENSUMAG00000015511) #16	ATF2 (ENSUMAG00000015564) #17	ATP5MC3 (ENSUMAG00000015579)	LNPK (ENSUMAG00000015613) #18	ENSUMAG00000015649 #22	HOXD10 (ENSUMAG00000015650) #23	ENSUMAG00000015653 #25	HOXD4 (ENSUMAG00000015658) #26	MTX2 (ENSUMAG00000015662) #29	ENSUMAG00000015686 ##30	NFE2L2 (ENSUMAG00000015689) #31	AGPS (ENSUMAG00000015781) #32	ENSUMAG00000016390 #33	PDE11A (ENSUMAG00000016414) #34	RBM45 (ENSUMAG00000016503) #36	OSBPL6 (ENSUMAG00000016519) #37	PRKRA (ENSUMAG00000016566)	PJVK (ENSUMAG00000016572)	FKBP7 (ENSUMAG00000016577)	PLEKHA3 (ENSUMAG00000016580)
Canidae	ANCESTRAL SPECIES	45	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a.g.b #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.i	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.tb #33	ENSGT00390000010116.ub #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Red fox	MODERN SPECIES	15	ENSVVUG00000012991 #9	SP9 (ENSVVUG00000012965) #10	CIR1 (ENSVVUG00000012957) #11	SCRN3 (ENSVVUG00000012946) #12	GPR155 (ENSVVUG00000012912) #13	ENSVVUG00000012900	WIPF1 (ENSVVUG00000012885) #14	CHRNA1 (ENSVVUG00000012830) #15	CHN1 (ENSVVUG00000012819) #16	ATF2 (ENSVVUG00000012774) #17	ATP5MC3 (ENSVVUG00000012759)	LNPK (ENSVVUG00000012737) #18	EVX2 (ENSVVUG00000012735) #19	HOXD13 (ENSVVUG00000012734) #20	HOXD12 (ENSVVUG00000012731) #21	ENSVVUG00000012726 #22	HOXD10 (ENSVVUG00000012722) #23	ENSVVUG00000012717 #24	HOXD8 (ENSVVUG00000012714) #25	HOXD3 (ENSVVUG00000012700) #27	ENSVVUG00000012694	ENSVVUG00000012682 #29	ENSVVUG00000012651 ##30	NFE2L2 (ENSVVUG00000012641) #31	ENSVVUG00000012637	ENSVVUG00000012634 #33	AGPS (ENSVVUG00000010164) #32	ENSVVUG00000010109 #33	PDE11A (ENSVVUG00000010094) #34	RBM45 (ENSVVUG00000010078) #36	OSBPL6 (ENSVVUG00000010039) #37
Canis_lupus	ANCESTRAL SPECIES	39	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a.g.b #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.i	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.tb #33	ENSGT00390000010116.ub #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Dingo	MODERN SPECIES	339	GPR155 (ENSCAFG00020005897) #13	ENSCAFG00020006068	WIPF1 (ENSCAFG00020006074) #14	ENSCAFG00020006077 #14	CHRNA1 (ENSCAFG00020006081) #15	ENSCAFG00020006110 #16	ENSCAFG00020006118 #16	ATF2 (ENSCAFG00020006131) #17	ENSCAFG00020006151	ENSCAFG00020006176	LNPK (ENSCAFG00020006192) #18	EVX2 (ENSCAFG00020006206) #19	HOXD13 (ENSCAFG00020006212) #20	HOXD12 (ENSCAFG00020006216) #21	HOXD9 (ENSCAFG00020006227) #24	HOXD11 (ENSCAFG00020006229) #22	HOXD10 (ENSCAFG00020006239) #23	HOXD8 (ENSCAFG00020006244) #25	HOXD4 (ENSCAFG00020006256) #26	HOXD3 (ENSCAFG00020006263) #27	HOXD1 (ENSCAFG00020006270) #28	MTX2 (ENSCAFG00020006273) #29	ENSCAFG00020006299 ##30	NFE2L2 (ENSCAFG00020006313) #31	AGPS (ENSCAFG00020006351) #32	ENSCAFG00020006961 #33	ENSCAFG00020006963 #33	PDE11A (ENSCAFG00020006966) #34	RBM45 (ENSCAFG00020007013) #36	OSBPL6 (ENSCAFG00020007025) #37	ENSCAFG00020007071
Dog	MODERN SPECIES	29	SP9 (ENSCAFG00845029658) #10	CIR1 (ENSCAFG00845015697) #11	SCRN3 (ENSCAFG00845015754) #12	GPR155 (ENSCAFG00845015821) #13	ENSCAFG00845015883	WIPF1 (ENSCAFG00845016036) #14	CHRNA1 (ENSCAFG00845016336) #15	CHN1 (ENSCAFG00845017147) #16	ATF2 (ENSCAFG00845017708) #17	ATP5MC3 (ENSCAFG00845018248)	ENSCAFG00845018368	LNPK (ENSCAFG00845018510) #18	EVX2 (ENSCAFG00845018704) #19	HOXD13 (ENSCAFG00845018741) #20	HOXD12 (ENSCAFG00845018775) #21	ENSCAFG00845018802 #22	HOXD9 (ENSCAFG00845018856) #24	HOXD10 (ENSCAFG00845019028) #23	HOXD4 (ENSCAFG00845019072) #26	HOXD3 (ENSCAFG00845019275) #27	HOXD1 (ENSCAFG00845019313) #28	MTX2 (ENSCAFG00845019381) #29	HNRNPA3 (ENSCAFG00845019864) #30	NFE2L2 (ENSCAFG00845020022) #31	AGPS (ENSCAFG00845020190) #32	TTC30A (ENSCAFG00845020493) #33	PDE11A (ENSCAFG00845020545) #34	ENSCAFG00845020768	RBM45 (ENSCAFG00845020808) #36	OSBPL6 (ENSCAFG00845021295) #37	PJVK (ENSCAFG00845022256)
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Equus	ANCESTRAL SPECIES	18	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00390000005569.x.a.a.b	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Donkey	MODERN SPECIES	24	OLA1 (ENSEASG00005022603) #9	SP9 (ENSEASG00005022600) #10	CIR1 (ENSEASG00005022598) #11	SCRN3 (ENSEASG00005022597) #12	GPR155 (ENSEASG00005022591) #13	WIPF1 (ENSEASG00005022583) #14	CHRNA1 (ENSEASG00005022581) #15	CHN1 (ENSEASG00005022579) #16	ATF2 (ENSEASG00005022575) #17	ATP5MC3 (ENSEASG00005022573)	LNPK (ENSEASG00005022567) #18	ENSEASG00005022564	EVX2 (ENSEASG00005022562) #19	HOXD13 (ENSEASG00005029242) #20	HOXD12 (ENSEASG00005022555) #21	HOXD11 (ENSEASG00005030904) #22	HOXD10 (ENSEASG00005022552) #23	HOXD9 (ENSEASG00005023994) #24	HOXD8 (ENSEASG00005033905) #25	HOXD4 (ENSEASG00005024806) #26	HOXD3 (ENSEASG00005022544) #27	HOXD1 (ENSEASG00005030887) #28	MTX2 (ENSEASG00005022537) #29	HNRNPA3 (ENSEASG00005022530) #30	NFE2L2 (ENSEASG00005028739) #31	ENSEASG00005026944 #33	AGPS (ENSEASG00005022514) #32	ENSEASG00005028303 #33	PDE11A (ENSEASG00005022489) #34	ENSEASG00005026887	RBM45 (ENSEASG00005022475) #36
Horse	MODERN SPECIES	9	SP3 (ENSECAG00000013930) #8	OLA1 (ENSECAG00000016353) #9	SP9 (ENSECAG00000028902) #10	CIR1 (ENSECAG00000006773) #11	SCRN3 (ENSECAG00000018530) #12	GPR155 (ENSECAG00000008471) #13	WIPF1 (ENSECAG00000015984)	CHRNA1 (ENSECAG00000019649) #15	CHN1 (ENSECAG00000008277) #16	ATF2 (ENSECAG00000018723) #17	ATP5MC3 (ENSECAG00000008514)	LNPK (ENSECAG00000008534) #18	ENSECAG00000043913	EVX2 (ENSECAG00000019796) #19	HOXD13 (ENSECAG00000020388) #20	HOXD11 (ENSECAG00000003045) #22	HOXD10 (ENSECAG00000020599) #23	HOXD9 (ENSECAG00000021845) #24	HOXD8 (ENSECAG00000021980) #25	HOXD4 (ENSECAG00000038429) #26	HOXD3 (ENSECAG00000022129) #27	HOXD1 (ENSECAG00000035437) #28	MTX2 (ENSECAG00000022464) #29	HNRNPA3 (ENSECAG00000059976) #30	NFE2L2 (ENSECAG00000005675) #31	AGPS (ENSECAG00000008695) #32	ENSECAG00000051775	ENSECAG00000000927 #33	PDE11A (ENSECAG00000004445) #34	ENSECAG00000057854	CYCT (ENSECAG00000016170)
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Megabat	MODERN SPECIES	1085												LNPK (ENSPVAG00000017411) #18	EVX2 (ENSPVAG00000017414) #19	HOXD13 (ENSPVAG00000017415) #20	HOXD12 (ENSPVAG00000017416) #21	HOXD11 (ENSPVAG00000017417) #22	HOXD10 (ENSPVAG00000017418) #23	HOXD8 (ENSPVAG00000017420) #25	HOXD3 (ENSPVAG00000017421) #27	HOXD1 (ENSPVAG00000017425) #28	MTX2 (ENSPVAG00000017426) #29
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a ##30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Greater horseshoe bat	MODERN SPECIES	26	OLA1 (ENSRFEG00010000935) #9	ENSRFEG00010000897	SP9 (ENSRFEG00010000885) #10	CIR1 (ENSRFEG00010000863) #11	SCRN3 (ENSRFEG00010000835) #12	GPR155 (ENSRFEG00010000805) #13	WIPF1 (ENSRFEG00010000762) #14	CHRNA1 (ENSRFEG00010000686) #15	CHN1 (ENSRFEG00010000595) #16	ATF2 (ENSRFEG00010000479) #17	ENSRFEG00010000353	LNPK (ENSRFEG00010000270) #18	EVX2 (ENSRFEG00010000230) #19	HOXD13 (ENSRFEG00010022173) #20	HOXD12 (ENSRFEG00010022172) #21	HOXD11 (ENSRFEG00010022171) #22	HOXD10 (ENSRFEG00010022170) #23	HOXD9 (ENSRFEG00010022169) #24	HOXD8 (ENSRFEG00010022168) #25	HOXD4 (ENSRFEG00010022166) #26	HOXD3 (ENSRFEG00010022165) #27	HOXD1 (ENSRFEG00010022164) #28	MTX2 (ENSRFEG00010022163) #29	ENSRFEG00010022161 ##30	NFE2L2 (ENSRFEG00010022160) #31	ENSRFEG00010022158 #32	ENSRFEG00010022157 #33	ENSRFEG00010022156 #33	PDE11A (ENSRFEG00010022154) #34	ENSRFEG00010022153	RBM45 (ENSRFEG00010022152) #36
Microbat	MODERN SPECIES	942	SP3 (ENSMLUG00000006791) #8	ENSMLUG00000025196 #9	CIR1 (ENSMLUG00000013807) #11	SCRN3 (ENSMLUG00000013823) #12	GPR155 (ENSMLUG00000013828) #13	WIPF1 (ENSMLUG00000022385) #14	CHRNA1 (ENSMLUG00000015698) #15	CHN1 (ENSMLUG00000015709) #16	ATF2 (ENSMLUG00000015718) #17	ENSMLUG00000012822	LNPK (ENSMLUG00000006972) #18	ENSMLUG00000022478	EVX2 (ENSMLUG00000006989) #19	HOXD13 (ENSMLUG00000006997) #20	HOXD12 (ENSMLUG00000007009) #21	HOXD11 (ENSMLUG00000007030) #22	HOXD10 (ENSMLUG00000007048) #23	HOXD8 (ENSMLUG00000028864) #25	HOXD4 (ENSMLUG00000012508) #26	HOXD3 (ENSMLUG00000012510) #27	ENSMLUG00000029447 #28	MTX2 (ENSMLUG00000015966) #29	ENSMLUG00000003906 ##30	NFE2L2 (ENSMLUG00000003909) #31	ENSMLUG00000025480	AGPS (ENSMLUG00000005113) #32	ENSMLUG00000005126 #33	ENSMLUG00000005133 #33	ENSMLUG00000028755	PDE11A (ENSMLUG00000005135) #34	RBM45 (ENSMLUG00000005782) #36
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116 #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Suina	ANCESTRAL SPECIES	3	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a.e #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00390000010491.kb.a	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618
Chacoan peccary	MODERN SPECIES	88	ENSCWAG00000015225	SP9 (ENSCWAG00000015261) #10	CIR1 (ENSCWAG00000015285) #11	SCRN3 (ENSCWAG00000015324) #12	GPR155 (ENSCWAG00000015434) #13	WIPF1 (ENSCWAG00000000086) #14	CHRNA1 (ENSCWAG00000000173) #15	CHN1 (ENSCWAG00000000417) #16	ATF2 (ENSCWAG00000000507) #17	ENSCWAG00000000620	LNPK (ENSCWAG00000000637) #18	ENSCWAG00000000677	EVX2 (ENSCWAG00000000686) #19	HOXD13 (ENSCWAG00000000704) #20	HOXD12 (ENSCWAG00000000716) #21	HOXD11 (ENSCWAG00000000728) #22	HOXD10 (ENSCWAG00000000737) #23	HOXD9 (ENSCWAG00000000750) #24	HOXD8 (ENSCWAG00000000766) #25	HOXD4 (ENSCWAG00000000799) #26	HOXD3 (ENSCWAG00000000815) #27	HOXD1 (ENSCWAG00000000831) #28	MTX2 (ENSCWAG00000000848) #29	HNRNPA3 (ENSCWAG00000000880) #30	NFE2L2 (ENSCWAG00000000916) #31	AGPS (ENSCWAG00000000957) #32	PDE11A (ENSCWAG00000001000) #34	ENSCWAG00000001084	RBM45 (ENSCWAG00000001104) #36	OSBPL6 (ENSCWAG00000001227) #37	PRKRA (ENSCWAG00000001459)
Pig	MODERN SPECIES	6	SP9 (ENSSSCG00000036172) #10	CIR1 (ENSSSCG00000027516) #11	SCRN3 (ENSSSCG00000023297) #12	GPR155 (ENSSSCG00000015965) #13	ENSSSCG00000027348	CHRNA1 (ENSSSCG00000015969) #15	ENSSSCG00000022345 #16	ATF2 (ENSSSCG00000038076) #17	ATP5MC3 (ENSSSCG00000015973)	LNPK (ENSSSCG00000015976) #18	ENSSSCG00000039002	ENSSSCG00000053760	EVX2 (ENSSSCG00000023146) #19	HOXD13 (ENSSSCG00000057890) #20	HOXD12 (ENSSSCG00000015980) #21	HOXD11 (ENSSSCG00000034741) #22	HOXD10 (ENSSSCG00000015981) #23	HOXD9 (ENSSSCG00000015982) #24	HOXD8 (ENSSSCG00000040349) #25	HOXD4 (ENSSSCG00000015984) #26	HOXD3 (ENSSSCG00000015985) #27	HOXD1 (ENSSSCG00000015986) #28	MTX2 (ENSSSCG00000022222) #29	ENSSSCG00000015988 ##30	NFE2L2 (ENSSSCG00000015987) #31	AGPS (ENSSSCG00000023983) #32	PDE11A (ENSSSCG00000038903) #34	ENSSSCG00000047774	RBM45 (ENSSSCG00000015996) #36	OSBPL6 (ENSSSCG00000023133) #37	PRKRA (ENSSSCG00000038254)
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.a #33	ENSGT00390000010116.fc.b #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Camelidae	ANCESTRAL SPECIES	16	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.b #33	ENSGT00940000162151 #34	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b
Arabian camel	MODERN SPECIES	31	SP3 (ENSCDRG00005001722) #8	ENSCDRG00005001752 #9	SP9 (ENSCDRG00005001817) #10	CIR1 (ENSCDRG00005001834) #11	SCRN3 (ENSCDRG00005001860) #12	GPR155 (ENSCDRG00005001897) #13	ENSCDRG00005001936 #14	CHRNA1 (ENSCDRG00005001973) #15	CHN1 (ENSCDRG00005002091) #16	ATF2 (ENSCDRG00005002159) #17	ATP5MC3 (ENSCDRG00005002307)	LNPK (ENSCDRG00005002325) #18	EVX2 (ENSCDRG00005002358) #19	HOXD13 (ENSCDRG00005002411) #20	HOXD12 (ENSCDRG00005002432) #21	HOXD11 (ENSCDRG00005002440) #22	HOXD10 (ENSCDRG00005002456) #23	HOXD9 (ENSCDRG00005002467) #24	HOXD8 (ENSCDRG00005002477) #25	HOXD4 (ENSCDRG00005002497) #26	HOXD3 (ENSCDRG00005002512) #27	MTX2 (ENSCDRG00005002532) #29	HNRNPA3 (ENSCDRG00005002567) #30	NFE2L2 (ENSCDRG00005002588) #31	AGPS (ENSCDRG00005002612) #32	ENSCDRG00005002654 #33	ENSCDRG00005002663 #33	PDE11A (ENSCDRG00005002676) #34	RBM45 (ENSCDRG00005002693) #36	OSBPL6 (ENSCDRG00005002764) #37	ENSCDRG00005002982
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.a #33	ENSGT00390000010116.fc.b #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Pecora	ANCESTRAL SPECIES	24	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.a #33	ENSGT00390000010116.fc.b #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Percora_a	ANCESTRAL SPECIES	5	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.a #33	ENSGT00390000010116.fc.b #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Bovidae	ANCESTRAL SPECIES	8	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.a #33	ENSGT00390000010116.fc.b #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Caprinae	ANCESTRAL SPECIES	5	ENSGT00510000046986.x.b.b.c	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT01010000228762	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.a #33	ENSGT00390000010116.fc.b #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Rambouillet Sheep	MODERN SPECIES	11	CIR1 (ENSOARG00020001547) #11	SCRN3 (ENSOARG00020001508) #12	GPR155 (ENSOARG00020001419) #13	ENSOARG00020001367	CHRNA1 (ENSOARG00020001273) #15	ENSOARG00020001229	ENSOARG00020001216	CHN1 (ENSOARG00020000831) #16	ATF2 (ENSOARG00020000583) #17	ATP5MC3 (ENSOARG00020000538)	LNPK (ENSOARG00020000416) #18	ENSOARG00020000394	EVX2 (ENSOARG00020000381) #19	HOXD13 (ENSOARG00020000373) #20	HOXD12 (ENSOARG00020000357) #21	hoxd11 (ENSOARG00020000346) #22	HOXD10 (ENSOARG00020000330) #23	HOXD9 (ENSOARG00020000321) #24	HOXD8 (ENSOARG00020000297) #25	HOXD4 (ENSOARG00020000275) #26	HOXD3 (ENSOARG00020000257) #27	HOXD1 (ENSOARG00020000237) #28	MTX2 (ENSOARG00020000188) #29	HNRNPA3 (ENSOARG00020000123) #30	NFE2L2 (ENSOARG00020022726) #31	AGPS (ENSOARG00020022410) #32	ENSOARG00020022373 #33	ENSOARG00020022364 #33	PDE11A (ENSOARG00020022115) #34	ENSOARG00020022078	RBM45 (ENSOARG00020022028) #36
Goat	MODERN SPECIES	11	CIR1 (ENSCHIG00000023936) #11	SCRN3 (ENSCHIG00000010523) #12	GPR155 (ENSCHIG00000024827) #13	ENSCHIG00000009043	CHRNA1 (ENSCHIG00000018272) #15	CHN1 (ENSCHIG00000017514) #16	ENSCHIG00000012635	ATF2 (ENSCHIG00000011446) #17	ENSCHIG00000018041	LNPK (ENSCHIG00000012313) #18	ENSCHIG00000025787	ENSCHIG00000004992	EVX2 (ENSCHIG00000026644) #19	HOXD13 (ENSCHIG00000009994) #20	HOXD12 (ENSCHIG00000014734) #21	HOXD11 (ENSCHIG00000026087) #22	HOXD10 (ENSCHIG00000011771) #23	HOXD9 (ENSCHIG00000023245) #24	HOXD8 (ENSCHIG00000013371) #25	HOXD4 (ENSCHIG00000019702) #26	HOXD3 (ENSCHIG00000011624) #27	HOXD1 (ENSCHIG00000017515) #28	MTX2 (ENSCHIG00000008892) #29	ENSCHIG00000015430 #30	NFE2L2 (ENSCHIG00000026055) #31	AGPS (ENSCHIG00000015256) #32	ENSCHIG00000011750 #33	ENSCHIG00000011716 #33	PDE11A (ENSCHIG00000016852) #34	ENSCHIG00000026156	RBM45 (ENSCHIG00000010687) #36
Bovinae	ANCESTRAL SPECIES	5	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.a #33	ENSGT00390000010116.fc.b #33	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a
Bos	ANCESTRAL SPECIES	6	ENSGT00940000155099 #8	ENSGT00390000000673.b.`c #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #30	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.a #33	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #33	ENSGT01100000263474.a.b.b.f.g.a.b
Bos_b	ANCESTRAL SPECIES	3	ENSGT00390000000673.b.`c #9	ENSGT00940000166167.b	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT01030000234916.g.b	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.a #33	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #33	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #34
Cow	MODERN SPECIES	11	CIR1 (ENSBTAG00000038620) #11	SCRN3 (ENSBTAG00000012966) #12	GPR155 (ENSBTAG00000021636) #13	WIPF1 (ENSBTAG00000001585)	CHRNA1 (ENSBTAG00000018253) #15	CHN1 (ENSBTAG00000008028) #16	ATF2 (ENSBTAG00000002295) #17	ATP5MC3 (ENSBTAG00000002944)	ENSBTAG00000031711	LNPK (ENSBTAG00000018061) #18	ENSBTAG00000050237	ENSBTAG00000002009	EVX2 (ENSBTAG00000049537) #19	HOXD13 (ENSBTAG00000004313) #20	HOXD12 (ENSBTAG00000004314) #21	HOXD11 (ENSBTAG00000033330) #22	HOXD10 (ENSBTAG00000016030) #23	HOXD9 (ENSBTAG00000016033) #24	HOXD8 (ENSBTAG00000049845) #25	HOXD4 (ENSBTAG00000039581) #26	HOXD3 (ENSBTAG00000004835) #27	HOXD1 (ENSBTAG00000015840) #28	MTX2 (ENSBTAG00000006693) #29	HNRNPA3 (ENSBTAG00000021580) #30	NFE2L2 (ENSBTAG00000019255) #31	AGPS (ENSBTAG00000009897) #32	TTC30B (ENSBTAG00000027696) #33	TTC30A (ENSBTAG00000027694) #33	ENSBTAG00000049860	PDE11A (ENSBTAG00000016396) #34	CYCT (ENSBTAG00000039522)
Hybrid Bos Indicus	MODERN SPECIES	11	CIR1 (ENSBIXG00005005349) #11	SCRN3 (ENSBIXG00005028812) #12	GPR155 (ENSBIXG00005028873) #13	ENSBIXG00005002196	CHRNA1 (ENSBIXG00005028981) #15	CHN1 (ENSBIXG00005001962) #16	ATF2 (ENSBIXG00005001719) #17	ATP5MC3 (ENSBIXG00005029222)	ENSBIXG00005029239	LNPK (ENSBIXG00005005282) #18	ENSBIXG00005029245	ENSBIXG00005029246	EVX2 (ENSBIXG00005005288) #19	HOXD13 (ENSBIXG00005001519) #20	HOXD12 (ENSBIXG00005001517) #21	HOXD11 (ENSBIXG00005001515) #22	HOXD10 (ENSBIXG00005005289) #23	HOXD9 (ENSBIXG00005030437) #24	HOXD8 (ENSBIXG00005030431) #25	HOXD3 (ENSBIXG00005030419) #27	HOXD1 (ENSBIXG00005030413) #28	MTX2 (ENSBIXG00005030400) #29	ENSBIXG00005030356	ENSBIXG00005030352	HNRNPA3 (ENSBIXG00005030333) #30	NFE2L2 (ENSBIXG00005030317) #31	AGPS (ENSBIXG00005030278) #32	ENSBIXG00005030257 #33	ENSBIXG00005030245	ENSBIXG00005030242 #33	PDE11A (ENSBIXG00005030175) #34
Bos_a	ANCESTRAL SPECIES	4	ENSGT00940000155099 #8	ENSGT00390000000673.b.`c #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.a #33	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a
Domestic yak	MODERN SPECIES	11	SP9 (ENSBGRG00000014139) #10	CIR1 (ENSBGRG00000014162) #11	SCRN3 (ENSBGRG00000014271) #12	GPR155 (ENSBGRG00000014360) #13	ENSBGRG00000014674	ENSBGRG00000014699	CHRNA1 (ENSBGRG00000014839) #15	CHN1 (ENSBGRG00000015101) #16	ATF2 (ENSBGRG00000015648) #17	ATP5MC3 (ENSBGRG00000016024)	ENSBGRG00000016132	LNPK (ENSBGRG00000016182) #18	EVX2 (ENSBGRG00000016780) #19	HOXD13 (ENSBGRG00000016836) #20	HOXD12 (ENSBGRG00000016890) #21	HOXD11 (ENSBGRG00000016923) #22	HOXD10 (ENSBGRG00000016979) #23	HOXD9 (ENSBGRG00000017014) #24	HOXD8 (ENSBGRG00000017045) #25	ENSBGRG00000017167 #26	HOXD3 (ENSBGRG00000017255) #27	HOXD1 (ENSBGRG00000017303) #28	MTX2 (ENSBGRG00000017363) #29	ENSBGRG00000000202 #30	NFE2L2 (ENSBGRG00000000213) #31	AGPS (ENSBGRG00000000237) #32	ENSBGRG00000000256 #33	ENSBGRG00000000264	ENSBGRG00000000270 #33	PDE11A (ENSBGRG00000000288) #34	ENSBGRG00000000317
Siberian musk deer	MODERN SPECIES	342								ENSMMSG00000008116	ENSMMSG00000008102 ##16	ATF2 (ENSMMSG00000007713) #17	ENSMMSG00000007642	LNPK (ENSMMSG00000007582) #18	EVX2 (ENSMMSG00000007555) #19	HOXD13 (ENSMMSG00000007541) #20	HOXD12 (ENSMMSG00000007530) #21	HOXD11 (ENSMMSG00000007513) #22	HOXD10 (ENSMMSG00000007495) #23	HOXD9 (ENSMMSG00000007480) #24	HOXD8 (ENSMMSG00000007407) #25	HOXD4 (ENSMMSG00000007365) #26	HOXD3 (ENSMMSG00000007343) #27	HOXD1 (ENSMMSG00000007322) #28	MTX2 (ENSMMSG00000007226) #29	ENSMMSG00000007068 ##30	NFE2L2 (ENSMMSG00000006992) #31	ENSMMSG00000006963	AGPS (ENSMMSG00000006894) #32	ENSMMSG00000006854 #33	ENSMMSG00000006819 #33	PDE11A (ENSMMSG00000006654) #34	ENSMMSG00000006624
Cetacea	ANCESTRAL SPECIES	14	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135.j #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000171387	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.a #33	ENSGT00390000010116.fc.b #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Blue whale	MODERN SPECIES	18	OLA1 (ENSBMSG00010005447) #9	SP9 (ENSBMSG00010005500) #10	CIR1 (ENSBMSG00010005507) #11	SCRN3 (ENSBMSG00010005522) #12	GPR155 (ENSBMSG00010005540) #13	ENSBMSG00010005563	ENSBMSG00010005581	CHRNA1 (ENSBMSG00010005615) #15	CHN1 (ENSBMSG00010005726) #16	ATF2 (ENSBMSG00010005883) #17	ATP5MC3 (ENSBMSG00010005937)	LNPK (ENSBMSG00010005955) #18	EVX2 (ENSBMSG00010005974) #19	HOXD13 (ENSBMSG00010005980) #20	HOXD12 (ENSBMSG00010005987) #21	HOXD11 (ENSBMSG00010005993) #22	HOXD10 (ENSBMSG00010006002) #23	HOXD9 (ENSBMSG00010006014) #24	HOXD8 (ENSBMSG00010006022) #25	HOXD4 (ENSBMSG00010006036) #26	HOXD3 (ENSBMSG00010006046) #27	HOXD1 (ENSBMSG00010006055) #28	MTX2 (ENSBMSG00010006100) #29	ENSBMSG00010006149 ##30	NFE2L2 (ENSBMSG00010006157) #31	AGPS (ENSBMSG00010006175) #32	ENSBMSG00010006193 #33	ENSBMSG00010006199 #33	PDE11A (ENSBMSG00010006216) #34	ENSBMSG00010006255	ENSBMSG00010006266
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135.j #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##30	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.a #33	ENSGT00390000010116.fc.b #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135.j #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##30	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.a #33	ENSGT00390000010116.fc.b #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00940000162304 #10	ENSGT00730000111135.j #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000008142.t	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.a #33	ENSGT00390000010116.fc.b #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00730000111135.j #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a	ENSGT00390000008142.t	ENSGT00950000182834.A.a.a.t	ENSGT00390000001859 #18	ENSGT00940000161025 #19	ENSGT00940000161457 #20	ENSGT00940000159938 #21	ENSGT00940000161308 #22	ENSGT00940000158266 #23	ENSGT00940000161503 #24	ENSGT00940000161653 #25	ENSGT00940000157270 #26	ENSGT00940000160027 #27	ENSGT00940000161892 #28	ENSGT00950000182919.C #29	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##30	ENSGT00950000182892.a.a.b #31	ENSGT00940000156112 #32	ENSGT00390000010116.fc.a #33	ENSGT00390000010116.fc.b #33	ENSGT00940000162151 #34	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36
Beluga whale	MODERN SPECIES	84	CIR1 (ENSDLEG00000008125) #11	SCRN3 (ENSDLEG00000008164) #12	GPR155 (ENSDLEG00000008209) #13	WIPF1 (ENSDLEG00000008289)	ENSDLEG00000008360	CHRNA1 (ENSDLEG00000008433) #15	CHN1 (ENSDLEG00000008654) #16	ATF2 (ENSDLEG00000008726) #17	ATP5G3 (ENSDLEG00000008800)	ENSDLEG00000008837	ENSDLEG00000008854	LNPK (ENSDLEG00000008885) #18	EVX2 (ENSDLEG00000008943) #19	HOXD13 (ENSDLEG00000009014) #20	HOXD12 (ENSDLEG00000009038) #21	ENSDLEG00000009052 #22	HOXD10 (ENSDLEG00000009076) #23	HOXD9 (ENSDLEG00000009091) #24	HOXD8 (ENSDLEG00000009104) #25	HOXD4 (ENSDLEG00000009166) #26	HOXD3 (ENSDLEG00000009171) #27	HOXD1 (ENSDLEG00000009181) #28	MTX2 (ENSDLEG00000009199) #29	ENSDLEG00000009227 ##30	NFE2L2 (ENSDLEG00000009266) #31	AGPS (ENSDLEG00000009335) #32	ENSDLEG00000009463 #33	ENSDLEG00000009469 #33	ENSDLEG00000009481 #34	ENSDLEG00000009493	RBM45 (ENSDLEG00000009507) #36
Narwhal	MODERN SPECIES	302	CIR1 (ENSMMNG00015008295) #11	SCRN3 (ENSMMNG00015008267) #12	GPR155 (ENSMMNG00015008223) #13	ENSMMNG00015008159	ENSMMNG00015008133	CHRNA1 (ENSMMNG00015008057) #15	CHN1 (ENSMMNG00015007913) #16	ATF2 (ENSMMNG00015007777) #17	ATP5MC3 (ENSMMNG00015007729)	ENSMMNG00015007699	ENSMMNG00015007684	LNPK (ENSMMNG00015007647) #18	EVX2 (ENSMMNG00015007622) #19	HOXD13 (ENSMMNG00015007609) #20	HOXD12 (ENSMMNG00015007598) #21	ENSMMNG00015007589 #22	HOXD10 (ENSMMNG00015007571) #23	HOXD9 (ENSMMNG00015007556) #24	HOXD8 (ENSMMNG00015007526) #25	HOXD4 (ENSMMNG00015007477) #26	HOXD3 (ENSMMNG00015007460) #27	HOXD1 (ENSMMNG00015007440) #28	MTX2 (ENSMMNG00015007394) #29	ENSMMNG00015007339 ##30	NFE2L2 (ENSMMNG00015007306) #31	AGPS (ENSMMNG00015007255) #32	ENSMMNG00015007232 #33	ENSMMNG00015007201 #33	ENSMMNG00015014296	PDE11A (ENSMMNG00015014260) #34	ENSMMNG00015014238
Vaquita	MODERN SPECIES	18	SP9 (ENSPSNG00000006701) #10	CIR1 (ENSPSNG00000006675) #11	SCRN3 (ENSPSNG00000006611) #12	ENSPSNG00000006580 #13	ENSPSNG00000006539	CHRNA1 (ENSPSNG00000006481) #15	CHN1 (ENSPSNG00000006315) #16	ATF2 (ENSPSNG00000006111) #17	ATP5MC3 (ENSPSNG00000006024)	ENSPSNG00000005869	ENSPSNG00000005846	LNPK (ENSPSNG00000005786) #18	EVX2 (ENSPSNG00000005734) #19	HOXD13 (ENSPSNG00000005715) #20	HOXD12 (ENSPSNG00000005695) #21	HOXD11 (ENSPSNG00000005666) #22	HOXD10 (ENSPSNG00000005654) #23	HOXD9 (ENSPSNG00000005639) #24	HOXD8 (ENSPSNG00000005602) #25	HOXD4 (ENSPSNG00000005556) #26	HOXD3 (ENSPSNG00000005539) #27	HOXD1 (ENSPSNG00000005524) #28	MTX2 (ENSPSNG00000005488) #29	ENSPSNG00000005439 ##30	NFE2L2 (ENSPSNG00000005384) #31	AGPS (ENSPSNG00000005315) #32	ENSPSNG00000005284 #33	ENSPSNG00000007902 #33	PDE11A (ENSPSNG00000007618) #34	ENSPSNG00000007564	RBM45 (ENSPSNG00000007527) #36
Sperm whale	MODERN SPECIES	11	OLA1 (ENSPCTG00005005654) #9	SP9 (ENSPCTG00005005728) #10	CIR1 (ENSPCTG00005005746) #11	SCRN3 (ENSPCTG00005005779) #12	GPR155 (ENSPCTG00005005831) #13	WIPF1 (ENSPCTG00005005895)	ENSPCTG00005005929	CHRNA1 (ENSPCTG00005005965) #15	CHN1 (ENSPCTG00005006263) #16	ATF2 (ENSPCTG00005007004) #17	ATP5MC3 (ENSPCTG00005007202)	LNPK (ENSPCTG00005007293) #18	EVX2 (ENSPCTG00005007330) #19	HOXD13 (ENSPCTG00005007354) #20	HOXD12 (ENSPCTG00005007367) #21	ENSPCTG00005007381 #22	HOXD10 (ENSPCTG00005007393) #23	HOXD9 (ENSPCTG00005007399) #24	HOXD8 (ENSPCTG00005007418) #25	HOXD4 (ENSPCTG00005007493) #26	HOXD3 (ENSPCTG00005007508) #27	HOXD1 (ENSPCTG00005007516) #28	MTX2 (ENSPCTG00005007528) #29	ENSPCTG00005003466 ##30	NFE2L2 (ENSPCTG00005003486) #31	AGPS (ENSPCTG00005003530) #32	ENSPCTG00005003590 #33	ENSPCTG00005003599 #33	PDE11A (ENSPCTG00005003616) #34	ENSPCTG00005003686	RBM45 (ENSPCTG00005003694) #36