Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00940000159898 #8	ENSGT00390000006826 #9	ENSGT00950000183184.a.a.f #10	ENSGT00940000158361 #11	ENSGT00390000015818.f #12	ENSGT00680000100018.a.a.a #13	ENSGT00940000160909	ENSGT00390000005923 #14	ENSGT00940000156472 #15	ENSGT00390000016619.a #16	ENSGT00940000160494 #17	ENSGT00940000155558 #18	ENSGT00940000157043 #19	ENSGT00940000160192 #20	ENSGT00940000158532 #21	ENSGT00940000160478 #22	ENSGT00940000157578 #23	ENSGT00940000158443 #24	ENSGT00940000155392 #25	ENSGT00940000153458.B.f #26	ENSGT00940000155611.s #27	ENSGT00730000111148 #28	ENSGT00440000038972 #29	ENSGT01100000263523.A #30	ENSGT01100000263523.B #31	ENSGT01100000263532.C.c.b #35	ENSGT00940000155850 #36	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618 #37	ENSGT00940000156791
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00940000159898 #8	ENSGT00390000006826 #9	ENSGT00950000183184.a.a.f #10	ENSGT00940000158361 #11	ENSGT00390000015818.f #12	ENSGT00680000100018.a.a.a #13	ENSGT00940000160909	ENSGT00390000005923 #14	ENSGT00940000156472 #15	ENSGT00390000016619.a #16	ENSGT00940000160494 #17	ENSGT00940000155558 #18	ENSGT00940000157043 #19	ENSGT00940000160192 #20	ENSGT00940000158532 #21	ENSGT00940000160478 #22	ENSGT00940000157578 #23	ENSGT00940000158443 #24	ENSGT00940000155392 #25	ENSGT00940000153458.B.f #26	ENSGT00940000155611.s #27	ENSGT00730000111148 #28	ENSGT00440000038972 #29	ENSGT01100000263523.A #30	ENSGT01100000263523.B #31	ENSGT01100000263532.C.c.b #35	ENSGT00940000155850 #36	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618 #37	ENSGT00940000156791
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00940000159898 #8	ENSGT00390000006826 #9	ENSGT00950000183184.a.a.f #10	ENSGT00940000158361 #11	ENSGT00390000015818.f #12	ENSGT00680000100018.a.a.a #13	ENSGT00940000160909	ENSGT00390000005923 #14	ENSGT00940000156472 #15	ENSGT00390000016619.a #16	ENSGT00940000160494 #17	ENSGT00940000155558 #18	ENSGT00940000157043 #19	ENSGT00940000160192 #20	ENSGT00940000158532 #21	ENSGT00940000160478 #22	ENSGT00940000157578 #23	ENSGT00940000158443 #24	ENSGT00940000155392 #25	ENSGT00940000153458.B.f #26	ENSGT00940000155611.s #27	ENSGT00730000111148 #28	ENSGT00440000038972 #29	ENSGT01100000263523.A #30	ENSGT01100000263523.B #31	ENSGT00900000143159 #32	ENSGT00900000143154 #33	ENSGT00920000150542 #34	ENSGT01100000263532.C.c.b #35	ENSGT00940000155850 #36	ENSGT00940000159964
Long-tailed chinchilla	MODERN SPECIES	110	TFPI (ENSCLAG00000015636) #7	CALCRL (ENSCLAG00000015762) #8	ZSWIM2 (ENSCLAG00000014139) #9	FAM171B (ENSCLAG00000014446) #10	ITGAV (ENSCLAG00000015669) #11	ZC3H15 (ENSCLAG00000016439) #12	FSIP2 (ENSCLAG00000013747) #13	NUP35 (ENSCLAG00000012559) #14	DUSP19 (ENSCLAG00000016586) #15	NCKAP1 (ENSCLAG00000016496) #16	FRZB (ENSCLAG00000012907) #17	DNAJC10 (ENSCLAG00000015976) #18	PDE1A (ENSCLAG00000012535) #19	PPP1R1C (ENSCLAG00000013643) #20	ITPRID2 (ENSCLAG00000014062) #21	NEUROD1 (ENSCLAG00000016796) #22	ENSCLAG00000016232 #23	ITGA4 (ENSCLAG00000011154) #24	UBE2E3 (ENSCLAG00000013235) #25	CWC22 (ENSCLAG00000011118) #26	ZNF385B (ENSCLAG00000014955) #27	SESTD1 (ENSCLAG00000011294) #28	CCDC141 (ENSCLAG00000014817) #29	ENSCLAG00000016407 #30	ENSCLAG00000015984 #31	ENSCLAG00000014023 #32	ENSCLAG00000015797 #33	ENSCLAG00000015650 #34	ENSCLAG00000016023 #35	PLEKHA3 (ENSCLAG00000014135) #36	PRKRA (ENSCLAG00000010338) #37
Degu	MODERN SPECIES	66	ITGAV (ENSODEG00000013327) #11	ZC3H15 (ENSODEG00000010533) #12	ENSODEG00000011277	FSIP2 (ENSODEG00000011670) #13	ZNF804A (ENSODEG00000011236)	ENSODEG00000010656	ENSODEG00000011356	ENSODEG00000011202 #14	DUSP19 (ENSODEG00000012741) #15	NCKAP1 (ENSODEG00000012291) #16	FRZB (ENSODEG00000011697) #17	DNAJC10 (ENSODEG00000011257) #18	PDE1A (ENSODEG00000011693) #19	PPP1R1C (ENSODEG00000012042) #20	ITPRID2 (ENSODEG00000011169) #21	NEUROD1 (ENSODEG00000019934) #22	CERKL (ENSODEG00000012012) #23	ENSODEG00000012379	ITGA4 (ENSODEG00000011915) #24	UBE2E3 (ENSODEG00000012934) #25
Guinea pig	MODERN SPECIES	3	ZSWIM2 (ENSCPOG00000000441) #9	FAM171B (ENSCPOG00000037168) #10	ITGAV (ENSCPOG00000015367) #11	ZC3H15 (ENSCPOG00000012965) #12	ZNF804A (ENSCPOG00000007581)	ENSCPOG00000034399	NUP35 (ENSCPOG00000011906) #14	DUSP19 (ENSCPOG00000035035) #15	NCKAP1 (ENSCPOG00000011890) #16	FRZB (ENSCPOG00000015013) #17	DNAJC10 (ENSCPOG00000012956) #18	PDE1A (ENSCPOG00000004164) #19	PPP1R1C (ENSCPOG00000001191) #20	ITPRID2 (ENSCPOG00000025723) #21	ENSCPOG00000031598	NEUROD1 (ENSCPOG00000025248) #22	ENSCPOG00000009493 #23	ITGA4 (ENSCPOG00000009479) #24	UBE2E3 (ENSCPOG00000006996) #25	ENSCPOG00000007492 #26	ZNF385B (ENSCPOG00000014985) #27	ENSCPOG00000025835 #28	CCDC141 (ENSCPOG00000003955) #29	ENSCPOG00000032370 #30	ENSCPOG00000030784 #31	ENSCPOG00000038729	ENSCPOG00000034673	ENSCPOG00000036479 #35	PLEKHA3 (ENSCPOG00000003906) #36	FKBP7 (ENSCPOG00000037159)	PJVK (ENSCPOG00000037882)
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000037472	ENSHGLG00000001571	NMI (ENSHGLG00000034716)	ENSHGLG00000001353	ENSHGLG00000009430 #18	FRZB (ENSHGLG00000011729) #17	NCKAP1 (ENSHGLG00000012280) #16	ENSHGLG00000012563 #15	ENSHGLG00000013230 #14	ENSHGLG00000050584	ENSHGLG00000037482	ENSHGLG00000045205	ENSHGLG00000018601 #19	PPP1R1C (ENSHGLG00000035196) #20	ITPRID2 (ENSHGLG00000004022) #21	NEUROD1 (ENSHGLG00000003374) #22	ENSHGLG00000003007 #23	ITGA4 (ENSHGLG00000002811) #24	UBE2E3 (ENSHGLG00000038435) #25	CWC22 (ENSHGLG00000005692) #26	ENSHGLG00000034152	ENSHGLG00000020480	ZNF385B (ENSHGLG00000004054) #27	ENSHGLG00000020829	SESTD1 (ENSHGLG00000003644) #28	CCDC141 (ENSHGLG00000002888) #29	TTN (ENSHGLG00000036835) #30	ENSHGLG00000018641 #36	FKBP7 (ENSHGLG00000019268)	PJVK (ENSHGLG00000011003)	ENSHGLG00000010663 #37