Mus	ANCESTRAL SPECIES	1	ENSGT00940000162041 #7	ENSGT00870000136554 #8	ENSGT00390000005826.a.b #9	ENSGT00900000141212 #10	ENSGT00910000144356 #11	ENSGT00940000162636.B #12	ENSGT00940000162636.A #13	ENSGT00940000162294 #14	ENSGT00940000163249 #15	ENSGT00940000161877.c.b ##16	ENSGT00940000161877.c.a #16	ENSGT00940000154755.c.a #17	ENSGT00940000154755.c.b.a #18	ENSGT00860000135980 #20	ENSGT00950000183147.B #19	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968 #29	ENSGT00660000095541.a.a #30	ENSGT00390000003094 #32	ENSGT00940000160886.o.a	ENSGT00520000055567.a.a.a #33	ENSGT00940000153311.a.b.a #34	ENSGT00940000161179 #35	ENSGT00520000055634.b #36	ENSGT00940000161638 #37
Shrew mouse	MODERN SPECIES	16	Nxt1 (MGP_PahariEiJ_G0025851) #7	Gzf1 (MGP_PahariEiJ_G0025852) #8	Napb (MGP_PahariEiJ_G0025853) #9	Cstl1 (MGP_PahariEiJ_G0025854) #10	Cst11 (MGP_PahariEiJ_G0025855) #11	Cstdc1 (MGP_PahariEiJ_G0025856) #12	Cst12 (MGP_PahariEiJ_G0025857) #13	Cst8 (MGP_PahariEiJ_G0025858) #14	Cst13 (MGP_PahariEiJ_G0025859) #15	Cstdc2 (MGP_PahariEiJ_G0025860) #16	Cst3 (MGP_PahariEiJ_G0025861) #17	Cst10 (MGP_PahariEiJ_G0025862) #18	Syndig1 (MGP_PahariEiJ_G0025863) #19	MGP_PahariEiJ_G0025864 #20	MGP_PahariEiJ_G0025865 #21	Cst7 (MGP_PahariEiJ_G0025866) #22	Apmap (MGP_PahariEiJ_G0025867) #23	Acss1 (MGP_PahariEiJ_G0025868) #24	Vsx1 (MGP_PahariEiJ_G0025869) #25	Entpd6 (MGP_PahariEiJ_G0025870) #26	Pygb (MGP_PahariEiJ_G0025871) #27	Abhd12 (MGP_PahariEiJ_G0025872) #28	Gins1 (MGP_PahariEiJ_G0025873) #29	Ninl (MGP_PahariEiJ_G0025874) #30	MGP_PahariEiJ_G0025875 #31	MGP_PahariEiJ_G0025876 #32	Nsfl1c (MGP_PahariEiJ_G0025877) #33	MGP_PahariEiJ_G0025878 #34	Sdcbp2 (MGP_PahariEiJ_G0025879) #35	Snph (MGP_PahariEiJ_G0025880) #36	Rad21l (MGP_PahariEiJ_G0025881) #37
Mus_A	ANCESTRAL SPECIES		ENSGT00940000162041 #7	ENSGT00870000136554 #8	ENSGT00390000005826.a.b #9	ENSGT00900000141212 #10	ENSGT00910000144356 #11	ENSGT00940000162636.B #12	ENSGT00940000162636.A #13	ENSGT00940000162294 #14	ENSGT00940000163249 #15	ENSGT00940000161877.c.b ##16	ENSGT00940000161877.c.a #16	ENSGT00940000154755.c.a #17	ENSGT00940000154755.c.b.a #18	ENSGT00860000135980 #20	ENSGT00950000183147.B #19	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968 #29	ENSGT00660000095541.a.a #30	ENSGT00390000003094 #32	ENSGT00520000055567.a.a.a #33	ENSGT00940000153311.a.b.a #34	ENSGT00940000161179 #35	ENSGT00520000055634.b #36	ENSGT00940000161638 #37	ENSGT00490000044517
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000005826.a.b #9	ENSGT00900000141212 #10	ENSGT00910000144356 #11	ENSGT00940000162636.B #12	ENSGT00940000162636.A #13	ENSGT00940000162294 #14	ENSGT00940000163249 #15	ENSGT00940000161877.c.b ##16	ENSGT00940000161877.c.a #16	ENSGT00940000154755.c.a #17	ENSGT00940000172008	ENSGT00940000154755.c.b.a #18	ENSGT00860000135980 #20	ENSGT00950000183147.B #19	ENSGT00940000153805.q.b.a.a.a.b.a	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968 #29	ENSGT00660000095541.a.a #30	ENSGT00390000003094 #32	ENSGT00520000055567.a.a.a #33	ENSGT00940000153311.a.b.a #34	ENSGT00940000161179 #35	ENSGT00520000055634.b #36	ENSGT00940000161638 #37	ENSGT00490000044517
Mouse	MODERN SPECIES	11	Cst13 (ENSMUSG00000036924) #15	Cst9 (ENSMUSG00000027445) ##16	Cstdc2 (ENSMUSG00000027446) #16	Cst3 (ENSMUSG00000027447) #17	Gm1330 (ENSMUSG00000063507)	Cst10 (ENSMUSG00000033156) #18	Syndig1 (ENSMUSG00000074736) #19	Zfp120 (ENSMUSG00000068134)	Gm14139 (ENSMUSG00000079009)	Zfp937 (ENSMUSG00000060336)	Gm14124 (ENSMUSG00000079008)	3300002I08Rik (ENSMUSG00000063364)	Gm10130 (ENSMUSG00000095315)	Zfp442 (ENSMUSG00000068130)	Zfp345 (ENSMUSG00000074731)	Cst7 (ENSMUSG00000068129) #22	Apmap (ENSMUSG00000033096) #23	Acss1 (ENSMUSG00000027452) #24	Vsx1 (ENSMUSG00000033080) #25	Entpd6 (ENSMUSG00000033068) #26	Pygb (ENSMUSG00000033059) #27	Abhd12 (ENSMUSG00000032046) #28	Gins1 (ENSMUSG00000027454) #29	Ninl (ENSMUSG00000068115) #30	Nanp (ENSMUSG00000053916) #32	Gm14151 (ENSMUSG00000079006)	Gm14147 (ENSMUSG00000079005)	4921509C19Rik (ENSMUSG00000061525)	Nsfl1c (ENSMUSG00000027455) #33	Fkbp1a (ENSMUSG00000032966) #34	Sdcbp2 (ENSMUSG00000027456) #35
Mus_C	ANCESTRAL SPECIES		ENSGT00390000005826.a.b #9	ENSGT00900000141212 #10	ENSGT00910000144356 #11	ENSGT00940000162636.B #12	ENSGT00940000162636.A #13	ENSGT00940000162294 #14	ENSGT00940000163249 #15	ENSGT00940000161877.c.b ##16	ENSGT00940000161877.c.a #16	ENSGT00940000154755.c.a #17	ENSGT00940000172008	ENSGT00940000154755.c.b.a #18	ENSGT00860000135980 #20	ENSGT00950000183147.B #19	ENSGT00940000153805.q.b.a.a.a.b.a	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968 #29	ENSGT00660000095541.a.a #30	ENSGT00390000003094 #32	ENSGT00520000055567.a.a.a #33	ENSGT00940000153311.a.b.a #34	ENSGT00940000161179 #35	ENSGT00520000055634.b #36	ENSGT00940000161638 #37	ENSGT00490000044517
spretus	MODERN SPECIES	11	Napb (MGP_SPRETEiJ_G0025328) #9	Cstl1 (MGP_SPRETEiJ_G0025329) #10	Cst11 (MGP_SPRETEiJ_G0025330) #11	Cstdc1 (MGP_SPRETEiJ_G0025331) #12	Cst12 (MGP_SPRETEiJ_G0025332) #13	Cst8 (MGP_SPRETEiJ_G0025333) #14	Cst13 (MGP_SPRETEiJ_G0025334) #15	Cst9 (MGP_SPRETEiJ_G0025335) ##16	Cstdc2 (MGP_SPRETEiJ_G0025336) #16	Cst3 (MGP_SPRETEiJ_G0025337) #17	MGP_SPRETEiJ_G0025338	Cst10 (MGP_SPRETEiJ_G0025339) #18	Syndig1 (MGP_SPRETEiJ_G0025340) #19	MGP_SPRETEiJ_G0025341 #20	Zfp120 (MGP_SPRETEiJ_G0025342)	Cst7 (MGP_SPRETEiJ_G0025343) #22	Apmap (MGP_SPRETEiJ_G0025344) #23	Acss1 (MGP_SPRETEiJ_G0025345) #24	Vsx1 (MGP_SPRETEiJ_G0025346) #25	Entpd6 (MGP_SPRETEiJ_G0025347) #26	Pygb (MGP_SPRETEiJ_G0025348) #27	Abhd12 (MGP_SPRETEiJ_G0025349) #28	Gins1 (MGP_SPRETEiJ_G0025350) #29	Ninl (MGP_SPRETEiJ_G0025351) #30	MGP_SPRETEiJ_G0025352 #32	MGP_SPRETEiJ_G0025353 #32	Nsfl1c (MGP_SPRETEiJ_G0025355) #33	MGP_SPRETEiJ_G0025356 #34	Sdcbp2 (MGP_SPRETEiJ_G0025357) #35	Snph (MGP_SPRETEiJ_G0025358) #36	Rad21l (MGP_SPRETEiJ_G0025359) #37
Steppe mouse	MODERN SPECIES	123																ENSMSIG00000000728 #22	Apmap (ENSMSIG00000000755) #23	Acss1 (ENSMSIG00000000805) #24	Vsx1 (ENSMSIG00000000862) #25	Entpd6 (ENSMSIG00000000878) #26	Pygb (ENSMSIG00000000916) #27	Abhd12 (ENSMSIG00000001029) #28	Gins1 (ENSMSIG00000001076) #29	Ninl (ENSMSIG00000001119) #30	Nanp (ENSMSIG00000001191) #32
Ryukyu mouse	MODERN SPECIES	11	Nxt1 (MGP_CAROLIEiJ_G0024408) #7	Gzf1 (MGP_CAROLIEiJ_G0024409) #8	Napb (MGP_CAROLIEiJ_G0024410) #9	Cstl1 (MGP_CAROLIEiJ_G0024411) #10	Cst11 (MGP_CAROLIEiJ_G0024412) #11	Cstdc1 (MGP_CAROLIEiJ_G0024413) #12	Cst12 (MGP_CAROLIEiJ_G0024414) #13	Cst8 (MGP_CAROLIEiJ_G0024415) #14	Cst13 (MGP_CAROLIEiJ_G0024416) #15	Cst9 (MGP_CAROLIEiJ_G0024417) ##16	Cstdc2 (MGP_CAROLIEiJ_G0024418) #16	Cst3 (MGP_CAROLIEiJ_G0024419) #17	Cst10 (MGP_CAROLIEiJ_G0024420) #18	Syndig1 (MGP_CAROLIEiJ_G0024421) #19	MGP_CAROLIEiJ_G0024422 #20	Cst7 (MGP_CAROLIEiJ_G0024423) #22	Apmap (MGP_CAROLIEiJ_G0024424) #23	Acss1 (MGP_CAROLIEiJ_G0024425) #24	Vsx1 (MGP_CAROLIEiJ_G0024426) #25	Entpd6 (MGP_CAROLIEiJ_G0024427) #26	Pygb (MGP_CAROLIEiJ_G0024428) #27	Abhd12 (MGP_CAROLIEiJ_G0024429) #28	MGP_CAROLIEiJ_G0024430 #29	Ninl (MGP_CAROLIEiJ_G0024431) #30	MGP_CAROLIEiJ_G0024432 #32	MGP_CAROLIEiJ_G0024433 #32	Nsfl1c (MGP_CAROLIEiJ_G0024434) #33	MGP_CAROLIEiJ_G0024435 #34	Sdcbp2 (MGP_CAROLIEiJ_G0024436) #35	Snph (MGP_CAROLIEiJ_G0024437) #36	Rad21l (MGP_CAROLIEiJ_G0024438) #37