Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00940000163276 #9	ENSGT00940000156996 #10	ENSGT00940000162041 #11	ENSGT00870000136554 #12	ENSGT00390000005826.a.b #13	ENSGT00900000141212 #14	ENSGT00910000144356 #15	ENSGT00940000162636.A #16	ENSGT00940000162294 #17	ENSGT00940000163249 #18	ENSGT00940000161877.d	ENSGT00940000154755.c.a #19	ENSGT00940000154755.c.b.d ##19	ENSGT00940000154755.c.b.c ##19	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968 #29	ENSGT00660000095541.a.a #30	ENSGT00390000003094 #31	ENSGT00520000055567.a.a.a	ENSGT00940000153311.a.b.a	ENSGT00940000161179	ENSGT00520000055634.b	ENSGT00940000161638	ENSGT00530000063880.a
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000155999 #8	ENSGT00940000163276 #9	ENSGT00940000156996 #10	ENSGT00940000162041 #11	ENSGT00870000136554 #12	ENSGT00390000005826.a.b #13	ENSGT00900000141212 #14	ENSGT00910000144356 #15	ENSGT00940000162636.A #16	ENSGT00940000162294 #17	ENSGT00940000163249 #18	ENSGT00940000154755.c.a #19	ENSGT00940000154755.c.b.d ##19	ENSGT00940000154755.c.b.c ##19	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968 #29	ENSGT00660000095541.a.a #30	ENSGT00390000003094 #31	ENSGT01030000234638.b.a.a #33	ENSGT00390000002121 #34	ENSGT00940000159016 #35	ENSGT00390000008063 #36	ENSGT01100000263497.E.a.a	ENSGT00390000006806
Degu	MODERN SPECIES	114	PAX1 (ENSODEG00000012427) #7	FOXA2 (ENSODEG00000011162) #8	THBD (ENSODEG00000010709) #9	CD93 (ENSODEG00000012518) #10	NXT1 (ENSODEG00000019900) #11	GZF1 (ENSODEG00000013020) #12	NAPB (ENSODEG00000011065) #13	CSTL1 (ENSODEG00000010719) #14	CST11 (ENSODEG00000013274) #15	ENSODEG00000012595 #16	ENSODEG00000010448 #17	ENSODEG00000010611 #18	CST3 (ENSODEG00000012334) #19	ENSODEG00000019797 #20	SYNDIG1 (ENSODEG00000012369) #21	CST7 (ENSODEG00000011264) #22	APMAP (ENSODEG00000010678) #23	ACSS1 (ENSODEG00000010733) #24	VSX1 (ENSODEG00000010102) #25	ENTPD6 (ENSODEG00000010721) #26	PYGB (ENSODEG00000011290) #27	ABHD12 (ENSODEG00000013149) #28	GINS1 (ENSODEG00000011331) #29	ENSODEG00000014252 #30	ENSODEG00000012295 #31	ENSODEG00000012183 #32	MAN2B1 (ENSODEG00000010434) #33	WDR83OS (ENSODEG00000011674) #34	WDR83 (ENSODEG00000010258) #35	DHPS (ENSODEG00000010756) #36	ENSODEG00000011490 #37
Long-tailed chinchilla	MODERN SPECIES	122	PAX1 (ENSCLAG00000016362) #7	FOXA2 (ENSCLAG00000014548) #8	THBD (ENSCLAG00000011994) #9	CD93 (ENSCLAG00000012062) #10	NXT1 (ENSCLAG00000012493) #11	GZF1 (ENSCLAG00000014714) #12	NAPB (ENSCLAG00000011540) #13	CSTL1 (ENSCLAG00000012446) #14	ENSCLAG00000011384 #15	ENSCLAG00000015474 #16	ENSCLAG00000015212 #17	ENSCLAG00000017066 #18	ENSCLAG00000015899 ##19	ENSCLAG00000012454 ##19	SYNDIG1 (ENSCLAG00000012586) #21	CST7 (ENSCLAG00000015428) #22	APMAP (ENSCLAG00000013445) #23	ACSS1 (ENSCLAG00000012190) #24	VSX1 (ENSCLAG00000015160) #25	ENSCLAG00000015639 #26	PYGB (ENSCLAG00000012954) #27	ABHD12 (ENSCLAG00000010950) #28	GINS1 (ENSCLAG00000010830) #29	NINL (ENSCLAG00000011605) #30	NANP (ENSCLAG00000014668) #31	ZNF333 (ENSCLAG00000014959)	MAN2B1 (ENSCLAG00000013086) #33	ENSCLAG00000011821 #34	WDR83 (ENSCLAG00000012198) #35	DHPS (ENSCLAG00000012256) #36	FBXW9 (ENSCLAG00000012587)
Guinea pig	MODERN SPECIES	8	THBD (ENSCPOG00000030575) #9	CD93 (ENSCPOG00000010252) #10	NXT1 (ENSCPOG00000008817) #11	GZF1 (ENSCPOG00000010790) #12	NAPB (ENSCPOG00000039063) #13	CSTL1 (ENSCPOG00000008734) #14	ENSCPOG00000003822 #15	ENSCPOG00000025993 #16	CST8 (ENSCPOG00000005550) #17	ENSCPOG00000021926 #18	ENSCPOG00000025294	ENSCPOG00000030716 #19	ENSCPOG00000030984 ##19	ENSCPOG00000026799 ##19	SYNDIG1 (ENSCPOG00000004943) #21	CST7 (ENSCPOG00000008022) #22	APMAP (ENSCPOG00000008131) #23	ACSS1 (ENSCPOG00000021704) #24	VSX1 (ENSCPOG00000003951) #25	ENTPD6 (ENSCPOG00000009587) #26	PYGB (ENSCPOG00000021215) #27	ABHD12 (ENSCPOG00000004078) #28	GINS1 (ENSCPOG00000000260) #29	NINL (ENSCPOG00000005041) #30	NANP (ENSCPOG00000031912) #31	ENSCPOG00000006435	ENSCPOG00000030176	ENSCPOG00000032111	NSFL1C (ENSCPOG00000004012)	ENSCPOG00000032891	SDCBP2 (ENSCPOG00000021957)