Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000155999 #8	ENSGT00940000163276	ENSGT00940000156996	ENSGT00940000162041	ENSGT00870000136554	ENSGT00390000005826.a.b	ENSGT00900000141212	ENSGT00910000144356	ENSGT00940000162636.A	ENSGT00940000162294	ENSGT00940000163249	ENSGT00940000161877.d	ENSGT00940000154755.c.a #18	ENSGT00940000154755.c.b #19	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793	ENSGT01100000263540.A.a #27	ENSGT00950000183148.b.b #28	ENSGT00940000160517 #29	ENSGT00390000013968 #30	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT00960000186656.a.b	ENSGT00520000055567.a.a.a	ENSGT00940000153311.a.b.a	ENSGT00940000161179	ENSGT00520000055634.b	ENSGT00940000161638
Naked mole-rat female	MODERN SPECIES	6	ENSHGLG00000043445 #7	FOXA2 (ENSHGLG00000048805) #8	PAX1 (ENSHGLG00000015866) #9	NKX2-2 (ENSHGLG00000048629) #10	NKX2-4 (ENSHGLG00000008824) #11	XRN2 (ENSHGLG00000014831) #12	KIZ (ENSHGLG00000014057) #13	ENSHGLG00000037468 #14	ENSHGLG00000016477 #15	ENSHGLG00000047697 #16	ENSHGLG00000013572 #17	ENSHGLG00000035992 #18	ENSHGLG00000001178 #19	ENSHGLG00000049828 #20	ENSHGLG00000001156 #21	CST7 (ENSHGLG00000001075) #22	APMAP (ENSHGLG00000045360) #23	ENSHGLG00000042834 #24	ENSHGLG00000034236 #25	ENSHGLG00000039362 #26	ENTPD6 (ENSHGLG00000000193) #27	PYGB (ENSHGLG00000000176) #28	ABHD12 (ENSHGLG00000035916) #29	ENSHGLG00000035611 #30	ENSHGLG00000040387 #31	ENSHGLG00000000136 #32	RASGRF1 (ENSHGLG00000000128) #33	ENSHGLG00000000119 #34	ENSHGLG00000000106 #35	ENSHGLG00000041324 #36	ENSHGLG00000000301 #37
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00940000163276	ENSGT00940000156996	ENSGT00940000162041	ENSGT00870000136554	ENSGT00390000005826.a.b	ENSGT00900000141212	ENSGT00910000144356	ENSGT00940000162636.A	ENSGT00940000162294	ENSGT00940000163249	ENSGT00940000161877.d	ENSGT00940000154755.c.a #18	ENSGT00940000154755.c.b.d #19	ENSGT00940000154755.c.b.c #19	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793	ENSGT01100000263540.A.a #27	ENSGT00950000183148.b.b #28	ENSGT00940000160517 #29	ENSGT00390000013968 #30	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT00520000055567.a.a.a	ENSGT00940000153311.a.b.a	ENSGT00940000161179	ENSGT00520000055634.b	ENSGT00940000161638	ENSGT00530000063880.a
Guinea pig	MODERN SPECIES	8	THBD (ENSCPOG00000030575)	CD93 (ENSCPOG00000010252)	NXT1 (ENSCPOG00000008817)	GZF1 (ENSCPOG00000010790)	NAPB (ENSCPOG00000039063)	CSTL1 (ENSCPOG00000008734)	ENSCPOG00000003822	ENSCPOG00000025993	CST8 (ENSCPOG00000005550)	ENSCPOG00000021926	ENSCPOG00000025294	ENSCPOG00000030716 #18	ENSCPOG00000030984 #19	ENSCPOG00000026799 #19	SYNDIG1 (ENSCPOG00000004943) #21	CST7 (ENSCPOG00000008022) #22	APMAP (ENSCPOG00000008131) #23	ACSS1 (ENSCPOG00000021704) #24	VSX1 (ENSCPOG00000003951)	ENTPD6 (ENSCPOG00000009587) #27	PYGB (ENSCPOG00000021215) #28	ABHD12 (ENSCPOG00000004078) #29	GINS1 (ENSCPOG00000000260) #30	NINL (ENSCPOG00000005041)	NANP (ENSCPOG00000031912)	ENSCPOG00000006435	ENSCPOG00000030176	ENSCPOG00000032111	NSFL1C (ENSCPOG00000004012)	ENSCPOG00000032891	SDCBP2 (ENSCPOG00000021957)
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000155999 #8	ENSGT00940000163276	ENSGT00940000156996	ENSGT00940000162041	ENSGT00870000136554	ENSGT00390000005826.a.b	ENSGT00900000141212	ENSGT00910000144356	ENSGT00940000162636.A	ENSGT00940000162294	ENSGT00940000163249	ENSGT00940000154755.c.a #18	ENSGT00940000154755.c.b.d #19	ENSGT00940000154755.c.b.c #19	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793	ENSGT01100000263540.A.a #27	ENSGT00950000183148.b.b #28	ENSGT00940000160517 #29	ENSGT00390000013968 #30	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT01030000234638.b.a.a	ENSGT00390000002121	ENSGT00940000159016	ENSGT00390000008063	ENSGT01100000263497.E.a.a	ENSGT00390000006806
Degu	MODERN SPECIES	114	PAX1 (ENSODEG00000012427) #9	FOXA2 (ENSODEG00000011162) #8	THBD (ENSODEG00000010709)	CD93 (ENSODEG00000012518)	NXT1 (ENSODEG00000019900)	GZF1 (ENSODEG00000013020)	NAPB (ENSODEG00000011065)	CSTL1 (ENSODEG00000010719)	CST11 (ENSODEG00000013274)	ENSODEG00000012595	ENSODEG00000010448	ENSODEG00000010611	CST3 (ENSODEG00000012334) #18	ENSODEG00000019797	SYNDIG1 (ENSODEG00000012369) #21	CST7 (ENSODEG00000011264) #22	APMAP (ENSODEG00000010678) #23	ACSS1 (ENSODEG00000010733) #24	VSX1 (ENSODEG00000010102)	ENTPD6 (ENSODEG00000010721) #27	PYGB (ENSODEG00000011290) #28	ABHD12 (ENSODEG00000013149) #29	GINS1 (ENSODEG00000011331) #30	ENSODEG00000014252	ENSODEG00000012295	ENSODEG00000012183	MAN2B1 (ENSODEG00000010434)	WDR83OS (ENSODEG00000011674)	WDR83 (ENSODEG00000010258)	DHPS (ENSODEG00000010756)	ENSODEG00000011490
Long-tailed chinchilla	MODERN SPECIES	122	PAX1 (ENSCLAG00000016362) #9	FOXA2 (ENSCLAG00000014548) #8	THBD (ENSCLAG00000011994)	CD93 (ENSCLAG00000012062)	NXT1 (ENSCLAG00000012493)	GZF1 (ENSCLAG00000014714)	NAPB (ENSCLAG00000011540)	CSTL1 (ENSCLAG00000012446)	ENSCLAG00000011384	ENSCLAG00000015474	ENSCLAG00000015212	ENSCLAG00000017066	ENSCLAG00000015899 #19	ENSCLAG00000012454 #19	SYNDIG1 (ENSCLAG00000012586) #21	CST7 (ENSCLAG00000015428) #22	APMAP (ENSCLAG00000013445) #23	ACSS1 (ENSCLAG00000012190) #24	VSX1 (ENSCLAG00000015160)	ENSCLAG00000015639 #27	PYGB (ENSCLAG00000012954) #28	ABHD12 (ENSCLAG00000010950) #29	GINS1 (ENSCLAG00000010830) #30	NINL (ENSCLAG00000011605)	NANP (ENSCLAG00000014668)	ZNF333 (ENSCLAG00000014959)	MAN2B1 (ENSCLAG00000013086)	ENSCLAG00000011821	WDR83 (ENSCLAG00000012198)	DHPS (ENSCLAG00000012256)	FBXW9 (ENSCLAG00000012587)