Laurasiatheria	ANCESTRAL SPECIES	17	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877 #19	ENSGT00940000154755 #20	ENSGT00940000163410	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094
Laurasiatheria_a	ANCESTRAL SPECIES	18	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877 #19	ENSGT00940000154755 #20	ENSGT00940000163410	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094
Artiodactyla	ANCESTRAL SPECIES	18	ENSGT00940000156819.a.a	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877 #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094
Artiodactyla_a	ANCESTRAL SPECIES	16	ENSGT00940000156819.a.a	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877 #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094
Artiodactyla_b	ANCESTRAL SPECIES	17	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877.i #18	ENSGT00940000161877.j #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT00950000182767.b.a.b.b.a	ENSGT00390000007046.b.a.a.fb	ENSGT00940000162838	ENSGT00940000159704	ENSGT00940000157404	ENSGT00940000161298
Pecora	ANCESTRAL SPECIES	9	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877.i #18	ENSGT00940000161877.j #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00940000153969.a #29	ENSGT00950000182994.B.a.b.e.a.b #30	ENSGT00530000063735.b #31	ENSGT00940000160326 #32	ENSGT00950000183739	ENSGT00940000163406 #33	ENSGT00940000155849 #34	ENSGT00940000162594 #35	ENSGT00940000160568.m #36
Percora_a	ANCESTRAL SPECIES	10	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877.i #18	ENSGT00940000161877.j #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00940000153969.a #29	ENSGT00950000182994.B.a.b.e.a.b #30	ENSGT00530000063735.b #31	ENSGT00940000160326 #32	ENSGT00950000183739	ENSGT00940000163406 #33	ENSGT00940000155849 #34	ENSGT00940000162594 #35	ENSGT00940000160568.m #36
Bovidae	ANCESTRAL SPECIES	10	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877.i #18	ENSGT00940000161877.j #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00940000153969.a #29	ENSGT00950000182994.B.a.b.e.a.b.a #30	ENSGT00530000063735.b #31	ENSGT00940000160326 #32	ENSGT00950000183739	ENSGT00940000163406 #33	ENSGT00940000155849 #34	ENSGT00940000162594 #35	ENSGT00940000160568.m #36
Caprinae	ANCESTRAL SPECIES	23	ENSGT00940000156996 #9	ENSGT00950000183014.f.a.h.u.a.a.b.a #10	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877.i #18	ENSGT00940000161877.j #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00940000153969.a #29	ENSGT00950000182994.B.a.b.e.a.b.a #30	ENSGT00530000063735.b #31	ENSGT00940000160326 #32	ENSGT00940000163406 #33	ENSGT00940000155849 #34	ENSGT00940000162594 #35	ENSGT00940000160568.m #36	ENSGT00940000153677.s.a.b.b #37
Goat	MODERN SPECIES	4	ENSCHIG00000022438 #7	THBD (ENSCHIG00000010975) #8	CD93 (ENSCHIG00000009092) #9	ENSCHIG00000021979 #10	GZF1 (ENSCHIG00000008882) #11	NAPB (ENSCHIG00000020249) #12	ENSCHIG00000021813 #13	ENSCHIG00000003642 #14	ENSCHIG00000017766 #15	ENSCHIG00000025947 #16	ENSCHIG00000021829 #17	ENSCHIG00000009930 #18	ENSCHIG00000022173 #19	CST3 (ENSCHIG00000009090) #20	SYNDIG1 (ENSCHIG00000020378) #21	CST7 (ENSCHIG00000021898) #22	APMAP (ENSCHIG00000013115) #23	ACSS1 (ENSCHIG00000021744) #24	VSX1 (ENSCHIG00000022900) #25	ENTPD6 (ENSCHIG00000013273) #26	PYGB (ENSCHIG00000025986) #27	ABHD12 (ENSCHIG00000021501) #28	ANKRD16 (ENSCHIG00000013205) #29	ENSCHIG00000026283 #30	TASOR2 (ENSCHIG00000014086) #31	ASB13 (ENSCHIG00000022650) #32	CALML5 (ENSCHIG00000009932) #33	NET1 (ENSCHIG00000004441) #34	TUBAL3 (ENSCHIG00000019472) #35	UCN3 (ENSCHIG00000007165) #36	ENSCHIG00000017096 #37
Rambouillet Sheep	MODERN SPECIES	182																ENSOARG00020018916 #22
Bovinae	ANCESTRAL SPECIES	20	ENSGT00940000155999	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877.j #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00940000153969.a #29	ENSGT00950000182994.B.a.b.e.b ##30	ENSGT00950000182994.B.a.b.e.a.b.a #30	ENSGT00530000063735.b #31	ENSGT00940000160326 #32	ENSGT00950000183739	ENSGT00940000163406 #33	ENSGT00940000155849 #34	ENSGT00940000162594 #35
Bos	ANCESTRAL SPECIES	22	ENSGT00940000155999	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554.jb #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877.j #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00940000153969.a #29	ENSGT00950000182994.B.a.b.e.b ##30	ENSGT00390000003289.g.b	ENSGT00950000182994.B.a.b.e.a.b.b.b ##30	ENSGT00530000063735.b #31	ENSGT00940000160326 #32	ENSGT00950000183739	ENSGT00940000163406 #33	ENSGT00940000155849 #34
Bos_a	ANCESTRAL SPECIES	7	ENSGT00940000155999	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554.jb #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877.j #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00940000153969.a #29	ENSGT00950000182994.B.a.b.e.b ##30	ENSGT00390000003289.g.b	ENSGT00950000182994.B.a.b.e.a.b.b.b ##30	ENSGT00530000063735.b #31	ENSGT00940000160326 #32	ENSGT00950000183739	ENSGT00940000163406 #33	ENSGT00940000155849 #34
Wild yak	MODERN SPECIES	1228															SYNDIG1 (ENSBMUG00000005390) #21	CST7 (ENSBMUG00000005404) #22	ENSBMUG00000005410 #23
Domestic yak	MODERN SPECIES	3	CD93 (ENSBGRG00000006986) #9	ENSBGRG00000007043	NXT1 (ENSBGRG00000007076)	ENSBGRG00000007097 #11	ENSBGRG00000007150 #11	NAPB (ENSBGRG00000007201) #12	CSTL1 (ENSBGRG00000007456)	ENSBGRG00000007520 #13	ENSBGRG00000007612 #14	ENSBGRG00000007655 #15	CST8 (ENSBGRG00000007704) #16	ENSBGRG00000007774 #17	ENSBGRG00000007806 #19	CST3 (ENSBGRG00000007838) #20	SYNDIG1 (ENSBGRG00000007905) #21	CST7 (ENSBGRG00000008014) #22	APMAP (ENSBGRG00000008063) #23	ACSS1 (ENSBGRG00000008277) #24	VSX1 (ENSBGRG00000008489) #25	ENTPD6 (ENSBGRG00000008602) #26	PYGB (ENSBGRG00000008678) #27	ABHD12 (ENSBGRG00000008988) #28	ANKRD16 (ENSBGRG00000009203) #29	ENSBGRG00000009324	ENSBGRG00000009364 ##30	TASOR2 (ENSBGRG00000009524) #31	ASB13 (ENSBGRG00000010215) #32	NET1 (ENSBGRG00000010362) #34	TUBAL3 (ENSBGRG00000010624) #35	UCN3 (ENSBGRG00000010758) #36	ENSBGRG00000010844 ##37
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000155999	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554.jb #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877.j #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00940000153969.a #29	ENSGT00390000003289.g.b	ENSGT00950000182994.B.a.b.e.a.b.b.b ##30	ENSGT00950000182994.B.a.b.e.a.b.a #30	ENSGT00530000063735.b #31	ENSGT00940000160326 #32	ENSGT00940000163406 #33	ENSGT00940000155849 #34	ENSGT00940000162594 #35
Hybrid Bos Indicus	MODERN SPECIES	4	THBD (ENSBIXG00005010640) #8	ENSBIXG00005000916	CD93 (ENSBIXG00005010666) #9	NXT1 (ENSBIXG00005010690)	GZF1 (ENSBIXG00005010698) #11	NAPB (ENSBIXG00005000942) #12	ENSBIXG00005000943	ENSBIXG00005010800 #13	ENSBIXG00005000950 #14	ENSBIXG00005010816 #15	CST8 (ENSBIXG00005006779) #16	ENSBIXG00005000954 #17	ENSBIXG00005010849 #19	ENSBIXG00005010878 #20	SYNDIG1 (ENSBIXG00005010911) #21	CST7 (ENSBIXG00005000982) #22	APMAP (ENSBIXG00005010989) #23	ACSS1 (ENSBIXG00005011033) #24	VSX1 (ENSBIXG00005011089) #25	ENTPD6 (ENSBIXG00005011132) #26	PYGB (ENSBIXG00005011231) #27	ABHD12 (ENSBIXG00005011264) #28	ANKRD16 (ENSBIXG00005011301) #29	ENSBIXG00005011317	ENSBIXG00005011350 ##30	TASOR2 (ENSBIXG00005011497) #31	ASB13 (ENSBIXG00005001128) #32	NET1 (ENSBIXG00005001148) #34	TUBAL3 (ENSBIXG00005011711) #35	UCN3 (ENSBIXG00005011732) #36	ENSBIXG00005011761 ##37
Cow	MODERN SPECIES	4	ENSBTAG00000035643	PAX1 (ENSBTAG00000006742)	FOXA2 (ENSBTAG00000012407)	THBD (ENSBTAG00000048591) #8	CD93 (ENSBTAG00000004207) #9	NXT1 (ENSBTAG00000004993)	GZF1 (ENSBTAG00000008908) #11	NAPB (ENSBTAG00000032704) #12	ENSBTAG00000027420 #15	MGC133636 (ENSBTAG00000013416) #14	CST8 (ENSBTAG00000032694) #16	ENSBTAG00000015949 #17	ENSBTAG00000032687 #19	CST3 (ENSBTAG00000000598) #20	SYNDIG1 (ENSBTAG00000040147) #21	CST7 (ENSBTAG00000004273) #22	APMAP (ENSBTAG00000004278) #23	ACSS1 (ENSBTAG00000004281) #24	VSX1 (ENSBTAG00000003335) #25	ENTPD6 (ENSBTAG00000009881) #26	PYGB (ENSBTAG00000004625) #27	ABHD12 (ENSBTAG00000001420) #28	ANKRD16 (ENSBTAG00000039071) #29	ENSBTAG00000035572	GDI2 (ENSBTAG00000005316) #30	TASOR2 (ENSBTAG00000019197) #31	ASB13 (ENSBTAG00000018805) #32	CALML5 (ENSBTAG00000013854) #33	NET1 (ENSBTAG00000007648) #34	TUBAL3 (ENSBTAG00000017740) #35	UCN3 (ENSBTAG00000035696) #36
American bison	MODERN SPECIES	2997	PAX1 (ENSBBBG00000022763)	FOXA2 (ENSBBBG00000022700)	THBD (ENSBBBG00000022684) #8	CD93 (ENSBBBG00000005967) #9	GZF1 (ENSBBBG00000022655) #11	NAPB (ENSBBBG00000022632) #12	CSTL1 (ENSBBBG00000022543)	ENSBBBG00000022535 #13	ENSBBBG00000022528 #14	ENSBBBG00000005942 #15	CST8 (ENSBBBG00000022516) #16	ENSBBBG00000022506 #17	ENSBBBG00000022502 #19	CST3 (ENSBBBG00000005938) #20	SYNDIG1 (ENSBBBG00000022490) #21	ENSBBBG00000022484 #22	APMAP (ENSBBBG00000005932) #23	ACSS1 (ENSBBBG00000022438) #24	ENSBBBG00000022411	VSX1 (ENSBBBG00000022405) #25	ENTPD6 (ENSBBBG00000022389) #26	PYGB (ENSBBBG00000022349) #27	ABHD12 (ENSBBBG00000022329) #28	ANKRD16 (ENSBBBG00000022315) #29	ENSBBBG00000022296	ENSBBBG00000022269	ENSBBBG00000022254 #30	TASOR2 (ENSBBBG00000022161) #31	ASB13 (ENSBBBG00000022092) #32	ENSBBBG00000022078	CALML5 (ENSBBBG00000022070) #33
Siberian musk deer	MODERN SPECIES	1194	FOXA2 (ENSMMSG00000018910)	THBD (ENSMMSG00000018897) #8	CD93 (ENSMMSG00000018871) #9	NXT1 (ENSMMSG00000018866)	GZF1 (ENSMMSG00000018836) #11	NAPB (ENSMMSG00000018763) #12	CSTL1 (ENSMMSG00000018731)	ENSMMSG00000018712 #13	ENSMMSG00000018676 #14	ENSMMSG00000018653 #15	CST8 (ENSMMSG00000018626) #16	ENSMMSG00000018603 #17	ENSMMSG00000018584 #19	CST3 (ENSMMSG00000018564) #20	SYNDIG1 (ENSMMSG00000018548) #21	CST7 (ENSMMSG00000018529) #22	APMAP (ENSMMSG00000018481) #23	ACSS1 (ENSMMSG00000018444) #24	VSX1 (ENSMMSG00000018374) #25	ENTPD6 (ENSMMSG00000018269) #26	PYGB (ENSMMSG00000018208) #27	ABHD12 (ENSMMSG00000018158) #28	ANKRD16 (ENSMMSG00000018094) #29	ENSMMSG00000017856 #30	TASOR2 (ENSMMSG00000017630) #31	ASB13 (ENSMMSG00000017589) #32	ENSMMSG00000017556 #33	NET1 (ENSMMSG00000017503) #34	TUBAL3 (ENSMMSG00000017448) #35	UCN3 (ENSMMSG00000017437) #36	ENSMMSG00000017397 ##37
Yarkand deer	MODERN SPECIES	15	CD93 (ENSCHYG00000023556) #9	NXT1 (ENSCHYG00000023576)	GZF1 (ENSCHYG00000023598) #11	NAPB (ENSCHYG00000023659) #12	ENSCHYG00000023804	ENSCHYG00000023824 #13	ENSCHYG00000023860 #14	ENSCHYG00000023874 #15	ENSCHYG00000023900 #16	ENSCHYG00000023931 #17	ENSCHYG00000023958 #18	ENSCHYG00000023998 #19	CST3 (ENSCHYG00000024014) #20	SYNDIG1 (ENSCHYG00000024042) #21	APMAP (ENSCHYG00000024095) #23	ENSCHYG00000024206 #22	ACSS1 (ENSCHYG00000024231) #24	VSX1 (ENSCHYG00000024285) #25	ENTPD6 (ENSCHYG00000024367) #26	PYGB (ENSCHYG00000024495) #27	ABHD12 (ENSCHYG00000024569) #28	ENSCHYG00000013693 #29	GDI2 (ENSCHYG00000013832) ##30	TASOR2 (ENSCHYG00000014279) #31	ASB13 (ENSCHYG00000014908) #32	CALML5 (ENSCHYG00000015185) #33	ENSCHYG00000015219	NET1 (ENSCHYG00000015284) #34	TUBAL3 (ENSCHYG00000015848) #35	UCN3 (ENSCHYG00000015962) #36	ENSCHYG00000016140 #37
Cetacea	ANCESTRAL SPECIES	3	ENSGT00940000156819.a.a	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877.j #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT00950000182767.b.a.b.b.a	ENSGT00390000007046.b.a.a.fb	ENSGT00940000162977	ENSGT00940000157404	ENSGT00940000159704	ENSGT00940000161298
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00940000159137	ENSGT00940000155999	ENSGT00940000156819.a.a	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000163249 #17	ENSGT00940000161877.j #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT00950000182767.b.a.b.b.a	ENSGT00390000007046.b.a.a.fb	ENSGT00940000162977	ENSGT00940000157404	ENSGT00940000159704	ENSGT00940000161298
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00940000159137	ENSGT00940000155999	ENSGT00940000156819.a.a	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000163249 #17	ENSGT00940000161877.j #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT00950000182767.b.a.b.b.a	ENSGT00390000007046.b.a.a.fb	ENSGT00940000162977	ENSGT00940000157404	ENSGT00940000159704	ENSGT00940000161298
Dolphin	MODERN SPECIES	2301																ENSTTRG00000001629 #22	APMAP (ENSTTRG00000001630) #23	ACSS1 (ENSTTRG00000001631) #24	VSX1 (ENSTTRG00000001632) #25	ENTPD6 (ENSTTRG00000001633) #26	PYGB (ENSTTRG00000001634) #27	ABHD12 (ENSTTRG00000001636) #28	GINS1 (ENSTTRG00000001637)	ENSTTRG00000001638
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00940000159137	ENSGT00940000155999	ENSGT00940000156819.a.a	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000163249 #17	ENSGT00940000161877.j #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT00950000182767.b.a.b.b.a	ENSGT00390000007046.b.a.a.fb	ENSGT00940000162977	ENSGT01010000228897	ENSGT00940000159704	ENSGT00940000157404
Vaquita	MODERN SPECIES	6	XRN2 (ENSPSNG00000004918)	NKX2-4 (ENSPSNG00000004868)	NKX2-2 (ENSPSNG00000004832)	PAX1 (ENSPSNG00000004773)	FOXA2 (ENSPSNG00000004696)	SSTR4 (ENSPSNG00000011467)	THBD (ENSPSNG00000011441) #8	CD93 (ENSPSNG00000011407) #9	NXT1 (ENSPSNG00000011355)	GZF1 (ENSPSNG00000011314) #11	ENSPSNG00000011208 #12	ENSPSNG00000011147 #17	ENSPSNG00000011009 #19	CST3 (ENSPSNG00000010957) #20	SYNDIG1 (ENSPSNG00000010897) #21	CST7 (ENSPSNG00000010836) #22	APMAP (ENSPSNG00000010757) #23	ACSS1 (ENSPSNG00000010625) #24	VSX1 (ENSPSNG00000010521) #25	ENTPD6 (ENSPSNG00000010051) #26	PYGB (ENSPSNG00000009852) #27	ABHD12 (ENSPSNG00000009768) #28	GINS1 (ENSPSNG00000009717)	ENSPSNG00000009688	ENSPSNG00000009624	OTOR (ENSPSNG00000009573)	SNRPB2 (ENSPSNG00000009531)	ENSPSNG00000009313	ENSPSNG00000009177	FLRT3 (ENSPSNG00000009154)	MACROD2 (ENSPSNG00000009064)
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00940000159137	ENSGT00940000155999	ENSGT00940000156819.a.a	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000163249 #17	ENSGT00940000161877.j #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT00950000182767.b.a.b.b.a	ENSGT00390000007046.b.a.a.fb	ENSGT00390000007741.a.c.b	ENSGT00940000162977	ENSGT01010000228897	ENSGT00940000159704
Narwhal	MODERN SPECIES	299	NKX2-2 (ENSMMNG00015013937)	PAX1 (ENSMMNG00015013924)	FOXA2 (ENSMMNG00015013909)	SSTR4 (ENSMMNG00015013888)	THBD (ENSMMNG00015013881) #8	CD93 (ENSMMNG00015013869) #9	NXT1 (ENSMMNG00015013866)	GZF1 (ENSMMNG00015013857) #11	ENSMMNG00015013840 #12	CSTL1 (ENSMMNG00015013827)	CST11 (ENSMMNG00015013816) #13	ENSMMNG00015013807 #17	ENSMMNG00015013782 #19	CST3 (ENSMMNG00015013767) #20	SYNDIG1 (ENSMMNG00015013754) #21	CST7 (ENSMMNG00015013746) #22	APMAP (ENSMMNG00015013737) #23	ACSS1 (ENSMMNG00015013713) #24	VSX1 (ENSMMNG00015013692) #25	ENTPD6 (ENSMMNG00015013636) #26	PYGB (ENSMMNG00015013588) #27	ABHD12 (ENSMMNG00015013554) #28	GINS1 (ENSMMNG00015013542)	ENSMMNG00015013530	NANP (ENSMMNG00015013521)	OTOR (ENSMMNG00015013507)	SNRPB2 (ENSMMNG00015013493)	ENSMMNG00015013482	ENSMMNG00015013413	ENSMMNG00015013374	FLRT3 (ENSMMNG00015013368)
Beluga whale	MODERN SPECIES	48	PAX1 (ENSDLEG00000005123)	FOXA2 (ENSDLEG00000005115)	SSTR4 (ENSDLEG00000005108)	THBD (ENSDLEG00000005104) #8	CD93 (ENSDLEG00000005100) #9	NXT1 (ENSDLEG00000005096)	GZF1 (ENSDLEG00000005091) #11	ENSDLEG00000005080 #12	CSTL1 (ENSDLEG00000005075)	CST11 (ENSDLEG00000005067) #13	ENSDLEG00000005044 #14	ENSDLEG00000005035 #17	ENSDLEG00000005018 #19	CST3 (ENSDLEG00000004985) #20	SYNDIG1 (ENSDLEG00000004982) #21	CST7 (ENSDLEG00000004970) #22	APMAP (ENSDLEG00000004961) #23	ACSS1 (ENSDLEG00000004910) #24	VSX1 (ENSDLEG00000004879) #25	ENTPD6 (ENSDLEG00000004868) #26	PYGB (ENSDLEG00000004842) #27	ABHD12 (ENSDLEG00000004821) #28	GINS1 (ENSDLEG00000004814)	ENSDLEG00000004804	NANP (ENSDLEG00000004799)	OTOR (ENSDLEG00000004794)	SNRPB2 (ENSDLEG00000004783)	KIF16B (ENSDLEG00000020641)	ENSDLEG00000020625	ENSDLEG00000020618	ENSDLEG00000020611
Sperm whale	MODERN SPECIES	5	NKX2-4 (ENSPCTG00005009959)	NKX2-2 (ENSPCTG00005009931)	PAX1 (ENSPCTG00005009858)	FOXA2 (ENSPCTG00005009780)	SSTR4 (ENSPCTG00005009716)	CD93 (ENSPCTG00005009671) #9	CST3 (ENSPCTG00005009637) #20	ENSPCTG00005009585 #19	ENSPCTG00005009530 #18	ENSPCTG00005009487 #17	ENSPCTG00005009442 #14	CST11 (ENSPCTG00005009381) #13	CSTL1 (ENSPCTG00005009306)	ENSPCTG00005009273 #12	ENSPCTG00005009228 #21	CST7 (ENSPCTG00005009166) #22	APMAP (ENSPCTG00005009088) #23	ENSPCTG00005009058 #24	VSX1 (ENSPCTG00005008966) #25	ENTPD6 (ENSPCTG00005008559) #26	ABHD12 (ENSPCTG00005008481) #28	GINS1 (ENSPCTG00005008454)	OTOR (ENSPCTG00005008309)	SNRPB2 (ENSPCTG00005008280)	ENSPCTG00005008258	KIF16B (ENSPCTG00005007936)	FLRT3 (ENSPCTG00005007859)	MACROD2 (ENSPCTG00005007778)	SEL1L2 (ENSPCTG00005007423)	NDUFAF5 (ENSPCTG00005007331)	ESF1 (ENSPCTG00005007279)
Blue whale	MODERN SPECIES	6	CD93 (ENSBMSG00010012595) #9	NXT1 (ENSBMSG00010012589)	ENSBMSG00010012580 #11	ENSBMSG00010012568 #11	NAPB (ENSBMSG00010012544) #12	CSTL1 (ENSBMSG00010012521)	CST11 (ENSBMSG00010012502) #13	ENSBMSG00010012491 #14	ENSBMSG00010012475 #15	CST8 (ENSBMSG00010012422) #16	ENSBMSG00010012402 #17	ENSBMSG00010012390 #18	ENSBMSG00010012375 #19	CST3 (ENSBMSG00010012360) #20	SYNDIG1 (ENSBMSG00010012350) #21	CST7 (ENSBMSG00010012340) #22	APMAP (ENSBMSG00010012326) #23	ACSS1 (ENSBMSG00010012293) #24	VSX1 (ENSBMSG00010012276) #25	ENSBMSG00010012263	ENTPD6 (ENSBMSG00010012199) #26	PYGB (ENSBMSG00010012160) #27	ABHD12 (ENSBMSG00010012129) #28	GINS1 (ENSBMSG00010012115)	ENSBMSG00010012105	ENSBMSG00010012091	OTOR (ENSBMSG00010012080)	SNRPB2 (ENSBMSG00010012064)	ENSBMSG00010012034	FLRT3 (ENSBMSG00010011999)	MACROD2 (ENSBMSG00010011961)
Camelidae	ANCESTRAL SPECIES	49	ENSGT00940000155999	ENSGT00940000166261	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877 #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094
Arabian camel	MODERN SPECIES	10	CD93 (ENSCDRG00005019688) #9	ENSCDRG00005019685	GZF1 (ENSCDRG00005019674) #11	ENSCDRG00005019640 #12	CSTL1 (ENSCDRG00005019624)	ENSCDRG00005019617 #13	ENSCDRG00005019599 #14	ENSCDRG00005019579 #15	CST8 (ENSCDRG00005019565) #16	ENSCDRG00005019553 #17	ENSCDRG00005019539 #19	ENSCDRG00005019533 #19	ENSCDRG00005019523 #19	CST3 (ENSCDRG00005019511) #20	SYNDIG1 (ENSCDRG00005019502) #21	CST7 (ENSCDRG00005019480) #22	APMAP (ENSCDRG00005019456) #23	ACSS1 (ENSCDRG00005019447) #24	VSX1 (ENSCDRG00005019387) #25	ENTPD6 (ENSCDRG00005019115) #26	PYGB (ENSCDRG00005019048) #27	ABHD12 (ENSCDRG00005018892) #28	GINS1 (ENSCDRG00005018861)	NINL (ENSCDRG00005018825)	ENSCDRG00005018801	ENSCDRG00005018772	ENSCDRG00005018747
Suina	ANCESTRAL SPECIES	9	ENSGT00940000159137	ENSGT00940000155999	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877 #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT00940000160795	ENSGT00940000157511	ENSGT00940000159443	ENSGT00940000157626	ENSGT00510000049120	ENSGT00390000013178
Chacoan peccary	MODERN SPECIES	801	PAX1 (ENSCWAG00000008052)	FOXA2 (ENSCWAG00000007985)	THBD (ENSCWAG00000017996) #8	CD93 (ENSCWAG00000017965) #9	NXT1 (ENSCWAG00000017956)	GZF1 (ENSCWAG00000017910) #11	NAPB (ENSCWAG00000017225) #12	CSTL1 (ENSCWAG00000017189)	CST11 (ENSCWAG00000017158) #13	ENSCWAG00000017127 #15	CST8 (ENSCWAG00000017086) #16	ENSCWAG00000017060 #17	ENSCWAG00000017004 #19	CST3 (ENSCWAG00000016979) #20	SYNDIG1 (ENSCWAG00000016959) #21	CST7 (ENSCWAG00000016930) #22	APMAP (ENSCWAG00000016906) #23	ACSS1 (ENSCWAG00000016802) #24	VSX1 (ENSCWAG00000016751) #25	ENTPD6 (ENSCWAG00000016646) #26	PYGB (ENSCWAG00000016599) #27	ABHD12 (ENSCWAG00000016565) #28	GINS1 (ENSCWAG00000016501)	NINL (ENSCWAG00000016442)	NANP (ENSCWAG00000016415)	ADRA1D (ENSCWAG00000016385)	SMOX (ENSCWAG00000016321)	RNF24 (ENSCWAG00000016269)	PANK2 (ENSCWAG00000016218)	MAVS (ENSCWAG00000016195)	AP5S1 (ENSCWAG00000016155)
Pig	MODERN SPECIES	8	PAX1 (ENSSSCG00000007112)	FOXA2 (ENSSSCG00000007114)	THBD (ENSSSCG00000053422) #8	CD93 (ENSSSCG00000007116) #9	NXT1 (ENSSSCG00000007119)	GZF1 (ENSSSCG00000007117) #11	NAPB (ENSSSCG00000031219) #12	CSTL1 (ENSSSCG00000007121)	CST11 (ENSSSCG00000007122) #13	ENSSSCG00000007123 #15	ENSSSCG00000007124 #16	ENSSSCG00000007125 #17	CST9L (ENSSSCG00000029289) #19	CST3 (ENSSSCG00000037360) #20	SYNDIG1 (ENSSSCG00000007130) #21	CST7 (ENSSSCG00000007131) #22	APMAP (ENSSSCG00000036286) #23	ACSS1 (ENSSSCG00000007133) #24	VSX1 (ENSSSCG00000023887) #25	ENTPD6 (ENSSSCG00000027070) #26	PYGB (ENSSSCG00000022815) #27	ABHD12 (ENSSSCG00000040449) #28	GINS1 (ENSSSCG00000034913)	ENSSSCG00000007135	NANP (ENSSSCG00000053479)	ENSSSCG00000035283	ENSSSCG00000063198	ADRA1D (ENSSSCG00000007139)	SMOX (ENSSSCG00000007140)	RNF24 (ENSSSCG00000059435)	PANK2 (ENSSSCG00000007142)
Laurasiatheria_b	ANCESTRAL SPECIES	19	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877 #19	ENSGT00940000154755 #20	ENSGT00940000163410	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094
Laurasiatheria_c	ANCESTRAL SPECIES	17	ENSGT00940000156819.a.a	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877 #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094
Chiroptera	ANCESTRAL SPECIES	7	ENSGT00940000159137	ENSGT00940000155999	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877 #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094
Microchiroptera	ANCESTRAL SPECIES	6	ENSGT00940000159137	ENSGT00940000155999	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877 #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094
Microbat	MODERN SPECIES	1151	CD93 (ENSMLUG00000011185) #9	NXT1 (ENSMLUG00000006881)	GZF1 (ENSMLUG00000002194) #11	NAPB (ENSMLUG00000002203) #12	CSTL1 (ENSMLUG00000002210)	CST11 (ENSMLUG00000002218) #13	ENSMLUG00000028493 #15	CST8 (ENSMLUG00000002227) #16	ENSMLUG00000024267 #17	ENSMLUG00000007975 #19	CST3 (ENSMLUG00000028312) #20	ENSMLUG00000010298	ENSMLUG00000026533	ENSMLUG00000011668	SYNDIG1 (ENSMLUG00000012716) #21	CST7 (ENSMLUG00000004912) #22	APMAP (ENSMLUG00000010717) #23	ACSS1 (ENSMLUG00000000710) #24	ENTPD6 (ENSMLUG00000009410) #26	PYGB (ENSMLUG00000009430) #27	ABHD12 (ENSMLUG00000009465) #28	GINS1 (ENSMLUG00000000885)	NINL (ENSMLUG00000000892)	NANP (ENSMLUG00000017312)
Greater horseshoe bat	MODERN SPECIES	15													ENSRFEG00010012588	ENSRFEG00010012569	SYNDIG1 (ENSRFEG00010012536) #21	CST7 (ENSRFEG00010012468) #22	APMAP (ENSRFEG00010012419) #23	ACSS1 (ENSRFEG00010012326) #24	VSX1 (ENSRFEG00010012058) #25	ENTPD6 (ENSRFEG00010011594) #26	ENSRFEG00010011488 #27	ABHD12 (ENSRFEG00010011429) #28	GINS1 (ENSRFEG00010011337)	NINL (ENSRFEG00010011279)	NANP (ENSRFEG00010011232)	CST3 (ENSRFEG00010011121) #20	CST9L (ENSRFEG00010011055) #19	ENSRFEG00010011001 #17	ENSRFEG00010010952 #15	CST11 (ENSRFEG00010010901) #13	CSTL1 (ENSRFEG00010010843)
Megabat	MODERN SPECIES	4987																CST7 (ENSPVAG00000011465) #22
Equus	ANCESTRAL SPECIES	8	ENSGT00940000156819.a.a	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877 #19	ENSGT00940000154755 #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517 #28	ENSGT00950000183148.b.b #27	ENSGT01100000263540.A.a #26
Donkey	MODERN SPECIES	6	FOXA2 (ENSEASG00005002535)	SSTR4 (ENSEASG00005002540)	THBD (ENSEASG00005027531) #8	CD93 (ENSEASG00005002547) #9	NXT1 (ENSEASG00005033641)	GZF1 (ENSEASG00005002557) #11	NAPB (ENSEASG00005002564) #12	CSTL1 (ENSEASG00005002572)	CST11 (ENSEASG00005002576) #13	ENSEASG00005031840 #15	CST8 (ENSEASG00005030555) #16	ENSEASG00005025391 #17	ENSEASG00005027176 #19	ENSEASG00005002598 #20	ENSEASG00005002614 #21	CST7 (ENSEASG00005029197) #22	APMAP (ENSEASG00005002617) #23	ACSS1 (ENSEASG00005002623) #24	ENSEASG00005030814 #25	ENSEASG00005033023	ENSEASG00005024200	ENSEASG00005031105	NINL (ENSEASG00005003350)	GINS1 (ENSEASG00005003329)	ABHD12 (ENSEASG00005003318) #28	PYGB (ENSEASG00005003306) #27	ENSEASG00005003299 #26
Horse	MODERN SPECIES	14	FOXA2 (ENSECAG00000032004)	THBD (ENSECAG00000005241) #8	CD93 (ENSECAG00000016324) #9	NXT1 (ENSECAG00000035032)	GZF1 (ENSECAG00000011343) #11	NAPB (ENSECAG00000022016) #12	CSTL1 (ENSECAG00000019672)	CST11 (ENSECAG00000016342) #13	ENSECAG00000014988 #14	CST8 (ENSECAG00000029932) #16	CST9L (ENSECAG00000010654) #19	ENSECAG00000045045 #17	CST3 (ENSECAG00000038893) #20	SYNDIG1 (ENSECAG00000006421) #21	ENSECAG00000050617	CST7 (ENSECAG00000000268) #22	APMAP (ENSECAG00000014524) #23	ACSS1 (ENSECAG00000023870) #24	ENSECAG00000042915	ENSECAG00000056853	NANP (ENSECAG00000039564)	NINL (ENSECAG00000019590)	ENSECAG00000053094	GINS1 (ENSECAG00000026939)	ENSECAG00000033721	ABHD12 (ENSECAG00000005769) #28	PYGB (ENSECAG00000022048) #27	ENTPD6 (ENSECAG00000013042) #26	ENSECAG00000003028 #25
Carnivora	ANCESTRAL SPECIES	20	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877.n #19	ENSGT00940000154755.e.a #20	ENSGT00940000163410	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094
Felidae	ANCESTRAL SPECIES	3	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000163249 #17	ENSGT00940000161877.n #19	ENSGT00940000154755.e.a #20	ENSGT00940000163410.k	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT00950000183003.a.a.b	ENSGT00940000155238	ENSGT00940000160405	ENSGT00940000153259.a.b	ENSGT00390000000217	ENSGT00940000154389.a
Panthera	ANCESTRAL SPECIES	2	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000163249 #17	ENSGT00940000161877.n #19	ENSGT00940000154755.e.a #20	ENSGT00940000163410.k	ENSGT00940000154755.e.b #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT00950000183003.a.a.b	ENSGT00940000155238	ENSGT00940000160405	ENSGT00940000153259.a.b	ENSGT00390000000217	ENSGT00940000154389.a
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000163249 #17	ENSGT00940000161877.n #19	ENSGT00940000154755.e.a #20	ENSGT00940000163410.k	ENSGT00940000154755.e.b #20	ENSGT00950000183147.B #21	ENSGT00940000157034.kb	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT00950000183003.a.a.b	ENSGT00940000155238	ENSGT00940000160405	ENSGT00940000153259.a.b	ENSGT00390000000217	ENSGT00940000154389.a
lion	MODERN SPECIES	3	CD93 (ENSPLOG00000000855) #9	NXT1 (ENSPLOG00000000844)	GZF1 (ENSPLOG00000000839) #11	NAPB (ENSPLOG00000000809) #12	CSTL1 (ENSPLOG00000000776)	CST11 (ENSPLOG00000000758) #13	ENSPLOG00000000735 #14	ENSPLOG00000000715 #15	CST8 (ENSPLOG00000000695) #16	ENSPLOG00000000686 #17	CST9L (ENSPLOG00000000670) #19	CST3 (ENSPLOG00000000650) #20	ENSPLOG00000000559	SYNDIG1 (ENSPLOG00000000543) #21	ENSPLOG00000000534	CST7 (ENSPLOG00000000513) #22	APMAP (ENSPLOG00000000494) #23	ACSS1 (ENSPLOG00000000456) #24	VSX1 (ENSPLOG00000000431) #25	ENTPD6 (ENSPLOG00000000325) #26	PYGB (ENSPLOG00000000286) #27	ABHD12 (ENSPLOG00000000259) #28	GINS1 (ENSPLOG00000000243)	ENSPLOG00000000237	NINL (ENSPLOG00000000216)	NANP (ENSPLOG00000000195)	SOWAHC (ENSPLOG00000000181)	SEPTIN10 (ENSPLOG00000000161)	SH3RF3 (ENSPLOG00000000136)	EDAR (ENSPLOG00000000113)	CCDC138 (ENSPLOG00000020856)
leopard	MODERN SPECIES	208																CST7 (ENSPPRG00000003000) #22	APMAP (ENSPPRG00000002994) #23	ACSS1 (ENSPPRG00000002978) #24	VSX1 (ENSPPRG00000002878) #25	ENTPD6 (ENSPPRG00000002863) #26	PYGB (ENSPPRG00000002716) #27	ABHD12 (ENSPPRG00000002701) #28	GINS1 (ENSPPRG00000002684)	NANP (ENSPPRG00000002568)
Tiger	MODERN SPECIES	535	SSTR4 (ENSPTIG00000003769)	CD93 (ENSPTIG00000018580) #9	NXT1 (ENSPTIG00000003788)	GZF1 (ENSPTIG00000019328) #11	NAPB (ENSPTIG00000019947) #12	ENSPTIG00000001355	CST11 (ENSPTIG00000003091) #13	ENSPTIG00000005550 #14	ENSPTIG00000005641 #15	CST8 (ENSPTIG00000006377) #16	ENSPTIG00000007155 #17	CST9L (ENSPTIG00000007266) #19	ENSPTIG00000007325	ENSPTIG00000007645	SYNDIG1 (ENSPTIG00000008709) #21	CST7 (ENSPTIG00000009188) #22	APMAP (ENSPTIG00000009330) #23	ACSS1 (ENSPTIG00000010066) #24	ENSPTIG00000004550	VSX1 (ENSPTIG00000012183) #25	ENTPD6 (ENSPTIG00000013005) #26	PYGB (ENSPTIG00000014087) #27	ABHD12 (ENSPTIG00000016315) #28	GINS1 (ENSPTIG00000017055)	NANP (ENSPTIG00000020107)
Cat	MODERN SPECIES	2	CD93 (ENSFCAG00000025238) #9	NXT1 (ENSFCAG00000006482)	GZF1 (ENSFCAG00000006484) #11	NAPB (ENSFCAG00000037279) #12	CSTL1 (ENSFCAG00000041684)	CST11 (ENSFCAG00000003949) #13	ENSFCAG00000026179 #14	ENSFCAG00000042989 #15	CST8 (ENSFCAG00000023255) #16	ENSFCAG00000023071	ENSFCAG00000027887 #17	ENSFCAG00000030881 #19	CST3 (ENSFCAG00000038525) #20	ENSFCAG00000035754	SYNDIG1 (ENSFCAG00000033652) #21	CST7 (ENSFCAG00000014543) #22	APMAP (ENSFCAG00000030449) #23	ACSS1 (ENSFCAG00000014545) #24	ENSFCAG00000031750	VSX1 (ENSFCAG00000014546) #25	ENTPD6 (ENSFCAG00000027966) #26	PYGB (ENSFCAG00000008415) #27	ABHD12 (ENSFCAG00000008419) #28	GINS1 (ENSFCAG00000042801)	NINL (ENSFCAG00000005402)	NANP (ENSFCAG00000036408)	SOWAHC (ENSFCAG00000022998)	SEPTIN10 (ENSFCAG00000001967)	SH3RF3 (ENSFCAG00000029081)	EDAR (ENSFCAG00000012594)	CCDC138 (ENSFCAG00000030803)
Caniformia	ANCESTRAL SPECIES		ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877.m #19	ENSGT00940000161877.n #19	ENSGT00940000154755.e.a #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT00940000164428.e	ENSGT00940000164428.f.b	ENSGT00900000141186	ENSGT00390000012832	ENSGT00390000012495	ENSGT00390000016277.a
Canidae	ANCESTRAL SPECIES	24													ENSGT00940000161877.n #19	ENSGT00940000154755.e.a #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT00940000164428.e	ENSGT00940000164428.f.b	ENSGT00900000141186	ENSGT00390000012832	ENSGT00390000012495	ENSGT00390000016277.a
Canis_lupus	ANCESTRAL SPECIES	27													ENSGT00940000161877.n #19	ENSGT00940000154755.e.a #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094.c	ENSGT00940000164428.e	ENSGT00940000164428.f.b	ENSGT00900000141186	ENSGT00390000012832	ENSGT00390000012495	ENSGT00390000016277.a
Dog	MODERN SPECIES	15									ENSCAFG00845028258	ENSCAFG00845028282	ENSCAFG00845028318 #19	ENSCAFG00845028353 #20	SYNDIG1 (ENSCAFG00845028405) #21	ENSCAFG00845028430	ENSCAFG00845028470	ENSCAFG00845028509 #22	APMAP (ENSCAFG00845028549) #23	ACSS1 (ENSCAFG00845028598) #24	VSX1 (ENSCAFG00845028643) #25	ENTPD6 (ENSCAFG00845028707) #26	PYGB (ENSCAFG00845028916) #27	ABHD12 (ENSCAFG00845028992) #28	ENSCAFG00845029035	GINS1 (ENSCAFG00845029067)	NINL (ENSCAFG00845029110)	NANP (ENSCAFG00845029217)	ENSCAFG00845029250	ENSCAFG00845019227	ZNF445 (ENSCAFG00845019305)	ENSCAFG00845019385	ENSCAFG00845019630
Dingo	MODERN SPECIES	326										CST9L (ENSCAFG00020006315) #19	ENSCAFG00020006310 #20	ENSCAFG00020006309	SYNDIG1 (ENSCAFG00020006293) #21	ENSCAFG00020006286	ENSCAFG00020006285	CST7 (ENSCAFG00020006277) #22	APMAP (ENSCAFG00020006264) #23	ACSS1 (ENSCAFG00020005947) #24	VSX1 (ENSCAFG00020005925) #25	ENTPD6 (ENSCAFG00020005916) #26	PYGB (ENSCAFG00020005902) #27	ENSCAFG00020005810 #28	GINS1 (ENSCAFG00020005786)	NINL (ENSCAFG00020005723)	ENSCAFG00020005719	ENSCAFG00020005712	ENSCAFG00020005711	ZNF445 (ENSCAFG00020005703)	TCAIM (ENSCAFG00020005698)	TOPAZ1 (ENSCAFG00020005672)	ENSCAFG00020005662
Red fox	MODERN SPECIES	122													ENSVVUG00000022490 #20	SYNDIG1 (ENSVVUG00000022475) #21	ENSVVUG00000022444	CST7 (ENSVVUG00000022440) #22	APMAP (ENSVVUG00000022438) #23	ACSS1 (ENSVVUG00000022431) #24	ENSVVUG00000022428 #25	ENTPD6 (ENSVVUG00000022415) #26	PYGB (ENSVVUG00000022373) #27	ABHD12 (ENSVVUG00000022271) #28	GINS1 (ENSVVUG00000022265)	NINL (ENSVVUG00000022254)	ENSVVUG00000022250	NANP (ENSVVUG00000022249)	ZKSCAN7 (ENSVVUG00000022246)	ENSVVUG00000022234	ZNF445 (ENSVVUG00000022223)	TCAIM (ENSVVUG00000022195)	TOPAZ1 (ENSVVUG00000022169)
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000162636.B #14	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877.m.b #19	ENSGT00940000161877.n #19	ENSGT00940000161877.m.a #19	ENSGT00940000154755.e.a #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000003094	ENSGT00940000164428.e	ENSGT00940000164428.f.b	ENSGT00900000141186	ENSGT00390000012832	ENSGT00390000012495	ENSGT00390000016277.a
Mustelinae	ANCESTRAL SPECIES	43	ENSGT00940000156819.a.a	ENSGT00940000163276 #8	ENSGT00940000156996 #9	ENSGT00940000162041	ENSGT00870000136554 #11	ENSGT00390000005826.a.b #12	ENSGT00900000141212	ENSGT00910000144356 #13	ENSGT00940000165454 #15	ENSGT00940000162294 #16	ENSGT00940000163249 #17	ENSGT00940000161877.n #19	ENSGT00940000161877.m.a #19	ENSGT00940000154755.e.a #20	ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24
American mink	MODERN SPECIES	392															SYNDIG1 (ENSNVIG00000007628) #21	CYTF (ENSNVIG00000007712) #22	APMAP (ENSNVIG00000007822) #23	ACSS1 (ENSNVIG00000007966) #24	ENSNVIG00000008026	ENSNVIG00000008047
Ferret	MODERN SPECIES	204	SSTR4 (ENSMPUG00000019271)	THBD (ENSMPUG00000019265) #8	CD93 (ENSMPUG00000001163) #9	NXT1 (ENSMPUG00000019260)	GZF1 (ENSMPUG00000001160) #11	NAPB (ENSMPUG00000001158) #12	CST11 (ENSMPUG00000001154) #13	ENSMPUG00000001151 #15	CST8 (ENSMPUG00000001143) #16	ENSMPUG00000001140	ENSMPUG00000001138 #19	ENSMPUG00000001137 #19	CST3 (ENSMPUG00000001122) #20	ENSMPUG00000001119	SYNDIG1 (ENSMPUG00000001115) #21	CST7 (ENSMPUG00000001114) #22	APMAP (ENSMPUG00000001112) #23	ACSS1 (ENSMPUG00000001109) #24	ENSMPUG00000001101
Ursidae	ANCESTRAL SPECIES	64															ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24	ENSGT00940000160793 #25	ENSGT01100000263540.A.a #26	ENSGT00950000183148.b.b #27	ENSGT00940000160517 #28	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00390000003094
Giant Panda	MODERN SPECIES	16	ATAD1 (ENSAMEG00000000672)	ENSAMEG00000000606	ENSAMEG00000000595	ENSAMEG00000000577	ENSAMEG00000000551	ENSAMEG00000000523	CSTF2T (ENSAMEG00000028492)	PRKG1 (ENSAMEG00000003362)	DKK1 (ENSAMEG00000003369)	ENSAMEG00000025693	PCDH15 (ENSAMEG00000015978)	ENSAMEG00000005342	ENSAMEG00000030632	ENSAMEG00000030010 #20	ENSAMEG00000000530 #21	CST7 (ENSAMEG00000014248) #22	APMAP (ENSAMEG00000014230) #23	ACSS1 (ENSAMEG00000014206) #24	ENSAMEG00000003561 #26	PYGB (ENSAMEG00000003436) #27	ABHD12 (ENSAMEG00000003400) #28	ENSAMEG00000028823	ENSAMEG00000001886	ENSAMEG00000026067	ENSAMEG00000009413	TOPAZ1 (ENSAMEG00000027745)	ABHD5 (ENSAMEG00000015600)	ENSAMEG00000015613	ENSAMEG00000005957	ENSAMEG00000002236	UBP1 (ENSAMEG00000002341)
Ursus	ANCESTRAL SPECIES	313															ENSGT00950000183147.B #21	ENSGT00940000160277 #22	ENSGT00440000039984.a #23	ENSGT00940000158550 #24
American black bear	MODERN SPECIES	7117																CST7 (ENSUAMG00000024982) #22
Polar bear	MODERN SPECIES	271															SYNDIG1 (ENSUMAG00000012097) #21	ENSUMAG00000012087 #22	APMAP (ENSUMAG00000012073) #23	ACSS1 (ENSUMAG00000011645) #24
Eulipotyphla	ANCESTRAL SPECIES	941																ENSGT00940000160277 #22	ENSGT00440000039984.a #23
Common shrew	MODERN SPECIES	6343																ENSSARG00000010188 #22	ENSSARG00000010207 #23
Hedgehog	MODERN SPECIES	8389																ENSEEUG00000001357 #22	APMAP (ENSEEUG00000001364) #23