Murinae	ANCESTRAL SPECIES	6	ENSGT00390000011216 #7	ENSGT00640000091565 #8	ENSGT00940000158217 #9	ENSGT00390000004836 #10	ENSGT00940000159664 #11	ENSGT00940000161624 #12	ENSGT00390000007792.k #13	ENSGT00950000183213.a.b #14	ENSGT00390000007792.l #15	ENSGT00940000160624 #16	ENSGT00940000154208.c.b #17	ENSGT00940000153496.a.b #18	ENSGT00940000162213 #19	ENSGT00940000161569 #20	ENSGT00940000153840.a.a #21	ENSGT00440000033919 #22	ENSGT00940000155223.b #25	ENSGT00940000163180	ENSGT00940000160240 #28	ENSGT00390000007512 #29	ENSGT00390000002226 #30	ENSGT00940000156555 #31	ENSGT00940000157428 #32	ENSGT00980000198588 #33	ENSGT00940000154322.A #34	ENSGT00940000156843 #35	ENSGT00940000159856 #36	ENSGT00940000163071	ENSGT00390000006009.a.a.a #37	ENSGT00390000006555	ENSGT00940000158604
Rat	MODERN SPECIES	1	Rsad1 (ENSRNOG00000065974) #7	Mycbpap (ENSRNOG00000042912) #8	Epn3 (ENSRNOG00000003284) #9	Spata20 (ENSRNOG00000003273) #10	Cacna1g (ENSRNOG00000060528) #11	Abcc3 (ENSRNOG00000002948) #12	Ankrd40 (ENSRNOG00000002935) #13	Luc7l3 (ENSRNOG00000002835) #14	Ankrd40cl (ENSRNOG00000045669) #15	Wfikkn2 (ENSRNOG00000002831) #16	Tob1 (ENSRNOG00000002828) #17	Spag9 (ENSRNOG00000002749) #18	Nme1 (ENSRNOG00000002693) #19	Nme2 (ENSRNOG00000002671) #20	Mbtd1 (ENSRNOG00000049988) #21	Utp18 (ENSRNOG00000002644) #22	Tmsb10-ps6 (ENSRNOG00000036921) #23	LOC100911361 (ENSRNOG00000027006) #24	Car10 (ENSRNOG00000002626) #25	LOC100363469 (ENSRNOG00000031579) #26	AABR07013200.1 (ENSRNOG00000030491) #27	Tom1l1 (ENSRNOG00000002474) #28	Cox11 (ENSRNOG00000052096) #29	Stxbp4 (ENSRNOG00000032768) #30	Hlf (ENSRNOG00000067479) #31	Mmd (ENSRNOG00000002436) #32	Smim36 (ENSRNOG00000069860) #33	Tmem100 (ENSRNOG00000002434) #34	Pctp (ENSRNOG00000002425) #35	Ankfn1 (ENSRNOG00000064511) #36	Nog (ENSRNOG00000023683) #37
Mus	ANCESTRAL SPECIES	2	ENSGT00390000011216 #7	ENSGT00640000091565 #8	ENSGT00940000158217 #9	ENSGT00390000004836 #10	ENSGT00940000159664 #11	ENSGT00940000161624 #12	ENSGT00390000007792.k #13	ENSGT00950000183213.a.b #14	ENSGT00390000007792.l #15	ENSGT00940000160624 #16	ENSGT00940000154208.c.b #17	ENSGT00940000153496.a.b #18	ENSGT00940000162213 #19	ENSGT00940000161569 #20	ENSGT00940000153840.a.a #21	ENSGT00440000033919 #22	ENSGT00940000155223.b #25	ENSGT00940000163180	ENSGT00940000160240 #28	ENSGT00390000007512 #29	ENSGT00390000002226 #30	ENSGT00940000156555 #31	ENSGT00940000157428 #32	ENSGT00940000154322.A #34	ENSGT00940000156843 #35	ENSGT00940000159856 #36	ENSGT00940000163071	ENSGT00390000006009.a.a.a #37	ENSGT00390000006555	ENSGT00940000158604	ENSGT00940000160741
Mus_A	ANCESTRAL SPECIES	2	ENSGT00640000091565 #8	ENSGT00940000158217 #9	ENSGT00390000004836 #10	ENSGT00940000159664 #11	ENSGT00940000161624 #12	ENSGT00390000007792.k.e #13	ENSGT00950000183213.a.b #14	ENSGT00390000007792.l #15	ENSGT00940000160624 #16	ENSGT00940000154208.c.b #17	ENSGT00940000153496.a.b #18	ENSGT00940000162213 #19	ENSGT00940000163317	ENSGT00940000161569.c #20	ENSGT00940000153840.a.a #21	ENSGT00440000033919 #22	ENSGT00940000155223.b #25	ENSGT00940000163180	ENSGT00940000160240 #28	ENSGT00390000007512.q #29	ENSGT00390000002226 #30	ENSGT00940000156555 #31	ENSGT00940000157428 #32	ENSGT00940000154322.A #34	ENSGT00940000156843 #35	ENSGT00940000159856 #36	ENSGT00940000163071	ENSGT00390000006009.a.a.a #37	ENSGT00390000006555	ENSGT00940000158604	ENSGT00940000160741
Mus_B	ANCESTRAL SPECIES	2	ENSGT00640000091565 #8	ENSGT00940000158217 #9	ENSGT00390000004836 #10	ENSGT00940000159664 #11	ENSGT00940000161624 #12	ENSGT00390000007792.k.e #13	ENSGT00950000183213.a.b #14	ENSGT00390000007792.l #15	ENSGT00940000160624 #16	ENSGT00940000154208.c.b #17	ENSGT00940000153496.a.b #18	ENSGT00940000162213 #19	ENSGT00940000163317	ENSGT00940000161569.c #20	ENSGT00940000153840.a.a #21	ENSGT00440000033919 #22	ENSGT00940000155223.b #25	ENSGT00940000163180	ENSGT00940000160240 #28	ENSGT00390000007512.q #29	ENSGT00390000002226 #30	ENSGT00940000156555 #31	ENSGT00940000157428 #32	ENSGT00940000154322.A #34	ENSGT00940000156843 #35	ENSGT00940000159856 #36	ENSGT00940000163071	ENSGT00390000006009.a.a.a #37	ENSGT00390000006555	ENSGT00940000158604	ENSGT00940000160741
Mus_C	ANCESTRAL SPECIES	3	ENSGT00640000091565 #8	ENSGT00940000158217 #9	ENSGT00390000004836 #10	ENSGT00940000159664 #11	ENSGT00940000161624 #12	ENSGT00390000007792.k.e #13	ENSGT00950000183213.a.b #14	ENSGT00390000007792.l #15	ENSGT00940000160624 #16	ENSGT00940000154208.c.b #17	ENSGT00940000153496.a.b #18	ENSGT00940000162213 #19	ENSGT00940000163317	ENSGT00940000161569.c #20	ENSGT00940000153840.a.a #21	ENSGT00440000033919 #22	ENSGT00940000155223.b #25	ENSGT00940000163180	ENSGT00940000160240 #28	ENSGT00390000007512.q #29	ENSGT00390000002226 #30	ENSGT00940000156555 #31	ENSGT00940000157428 #32	ENSGT00940000154322.A #34	ENSGT00940000156843 #35	ENSGT00940000159856 #36	ENSGT00940000163071	ENSGT00390000006009.a.a.a #37	ENSGT00390000006555	ENSGT00940000158604	ENSGT00940000160741
Steppe mouse	MODERN SPECIES	3074	Acsf2 (ENSMSIG00000014533)	Rsad1 (ENSMSIG00000014491) #7	Mycbpap (ENSMSIG00000014428) #8	Epn3 (ENSMSIG00000014391) #9	Spata20 (ENSMSIG00000014363) #10	Cacna1g (ENSMSIG00000007636) #11	Abcc3 (ENSMSIG00000007369) #12	Ankrd40 (ENSMSIG00000007263) #13	Luc7l3 (ENSMSIG00000007180) #14	Ankrd40cl (ENSMSIG00000007162) #15	Wfikkn2 (ENSMSIG00000007145) #16	Tob1 (ENSMSIG00000007131) #17	Spag9 (ENSMSIG00000006671) #18	ENSMSIG00000006602 #19	Mbtd1 (ENSMSIG00000006207) #21	Utp18 (ENSMSIG00000006126) #22	Car10 (ENSMSIG00000006012) #25
spretus	MODERN SPECIES	2	Mycbpap (MGP_SPRETEiJ_G0017829) #8	Epn3 (MGP_SPRETEiJ_G0017828) #9	Spata20 (MGP_SPRETEiJ_G0017827) #10	Cacna1g (MGP_SPRETEiJ_G0017826) #11	Abcc3 (MGP_SPRETEiJ_G0017825) #12	Ankrd40 (MGP_SPRETEiJ_G0017824) #13	Luc7l3 (MGP_SPRETEiJ_G0017823) #14	Ankrd40cl (MGP_SPRETEiJ_G0017822) #15	Wfikkn2 (MGP_SPRETEiJ_G0017821) #16	Tob1 (MGP_SPRETEiJ_G0017820) #17	Spag9 (MGP_SPRETEiJ_G0017819) #18	Nme1 (MGP_SPRETEiJ_G0017818) #19	MGP_SPRETEiJ_G0017817	Nme2 (MGP_SPRETEiJ_G0017816) #20	MGP_SPRETEiJ_G0017815 #21	Utp18 (MGP_SPRETEiJ_G0017814) #22	Car10 (MGP_SPRETEiJ_G0017813) #25	Kif2b (MGP_SPRETEiJ_G0017812)	Tom1l1 (MGP_SPRETEiJ_G0017811) #28	Cox11 (MGP_SPRETEiJ_G0017810) #29	Stxbp4 (MGP_SPRETEiJ_G0017809) #30	Hlf (MGP_SPRETEiJ_G0017808) #31	Mmd (MGP_SPRETEiJ_G0017807) #32	Tmem100 (MGP_SPRETEiJ_G0017806) #34	Pctp (MGP_SPRETEiJ_G0017805) #35	MGP_SPRETEiJ_G0017804 #36	MGP_SPRETEiJ_G0017803	Nog (MGP_SPRETEiJ_G0017802) #37	Gm525 (MGP_SPRETEiJ_G0017801)	Dgke (MGP_SPRETEiJ_G0017800)	Trim25 (MGP_SPRETEiJ_G0017799)
Mouse	MODERN SPECIES	2	Mycbpap (ENSMUSG00000039110) #8	Epn3 (ENSMUSG00000010080) #9	Spata20 (ENSMUSG00000020867) #10	Cacna1g (ENSMUSG00000020866) #11	Abcc3 (ENSMUSG00000020865) #12	Ankrd40 (ENSMUSG00000020864) #13	Luc7l3 (ENSMUSG00000020863) #14	Ankrd40cl (ENSMUSG00000094091) #15	Wfikkn2 (ENSMUSG00000044177) #16	Tob1 (ENSMUSG00000037573) #17	Spag9 (ENSMUSG00000020859) #18	Nme1 (ENSMUSG00000037601) #19	Gm20390 (ENSMUSG00000091228)	Nme2 (ENSMUSG00000020857) #20	Mbtd1 (ENSMUSG00000059474) #21	Utp18 (ENSMUSG00000054079) #22	Car10 (ENSMUSG00000056158) #25	Kif2b (ENSMUSG00000046755)	Tom1l1 (ENSMUSG00000020541) #28	Cox11 (ENSMUSG00000020544) #29	Stxbp4 (ENSMUSG00000020546) #30	Hlf (ENSMUSG00000003949) #31	Mmd (ENSMUSG00000003948) #32	Smim36 (ENSMUSG00000110344)	Tmem100 (ENSMUSG00000069763) #34	Pctp (ENSMUSG00000020553) #35	Ankfn1 (ENSMUSG00000047773) #36	Nog (ENSMUSG00000048616) #37	Gm525 (ENSMUSG00000072553)	Dgke (ENSMUSG00000000276)	Trim25 (ENSMUSG00000000275)
Ryukyu mouse	MODERN SPECIES	2	Mycbpap (MGP_CAROLIEiJ_G0016983) #8	Epn3 (MGP_CAROLIEiJ_G0016982) #9	Spata20 (MGP_CAROLIEiJ_G0016981) #10	Cacna1g (MGP_CAROLIEiJ_G0016980) #11	Abcc3 (MGP_CAROLIEiJ_G0016979) #12	Ankrd40 (MGP_CAROLIEiJ_G0016978) #13	Luc7l3 (MGP_CAROLIEiJ_G0016977) #14	MGP_CAROLIEiJ_G0016976 #15	Wfikkn2 (MGP_CAROLIEiJ_G0016975) #16	Tob1 (MGP_CAROLIEiJ_G0016974) #17	Spag9 (MGP_CAROLIEiJ_G0016973) #18	Nme1 (MGP_CAROLIEiJ_G0016972) #19	MGP_CAROLIEiJ_G0016971	Nme2 (MGP_CAROLIEiJ_G0016970) #20	Mbtd1 (MGP_CAROLIEiJ_G0016969) #21	Utp18 (MGP_CAROLIEiJ_G0016968) #22	Car10 (MGP_CAROLIEiJ_G0016967) #25	Kif2b (MGP_CAROLIEiJ_G0016966)	Tom1l1 (MGP_CAROLIEiJ_G0016965) #28	Cox11 (MGP_CAROLIEiJ_G0016964) #29	Stxbp4 (MGP_CAROLIEiJ_G0016963) #30	Hlf (MGP_CAROLIEiJ_G0016962) #31	Mmd (MGP_CAROLIEiJ_G0016961) #32	Tmem100 (MGP_CAROLIEiJ_G0016960) #34	Pctp (MGP_CAROLIEiJ_G0016959) #35	MGP_CAROLIEiJ_G0016958 #36	MGP_CAROLIEiJ_G0016957	Nog (MGP_CAROLIEiJ_G0016956) #37	Gm525 (MGP_CAROLIEiJ_G0016955)	Dgke (MGP_CAROLIEiJ_G0016954)	Trim25 (MGP_CAROLIEiJ_G0016953)
Shrew mouse	MODERN SPECIES	5	Mycbpap (MGP_PahariEiJ_G0018114) #8	Epn3 (MGP_PahariEiJ_G0018113) #9	Spata20 (MGP_PahariEiJ_G0018112) #10	Cacna1g (MGP_PahariEiJ_G0018111) #11	Abcc3 (MGP_PahariEiJ_G0018110) #12	Ankrd40 (MGP_PahariEiJ_G0018109) #13	Luc7l3 (MGP_PahariEiJ_G0018108) #14	MGP_PahariEiJ_G0018107 #15	Wfikkn2 (MGP_PahariEiJ_G0018106) #16	Tob1 (MGP_PahariEiJ_G0018105) #17	Spag9 (MGP_PahariEiJ_G0018104) #18	MGP_PahariEiJ_G0018103 #19	MGP_PahariEiJ_G0018102 #19	Nme2 (MGP_PahariEiJ_G0018101) #20	Mbtd1 (MGP_PahariEiJ_G0018100) #21	Utp18 (MGP_PahariEiJ_G0018099) #22	Car10 (MGP_PahariEiJ_G0018098) #25	Kif2b (MGP_PahariEiJ_G0018097)	Tom1l1 (MGP_PahariEiJ_G0018096) #28	Cox11 (MGP_PahariEiJ_G0018095) #29	Stxbp4 (MGP_PahariEiJ_G0018094) #30	Hlf (MGP_PahariEiJ_G0018093) #31	Mmd (MGP_PahariEiJ_G0018092) #32	Tmem100 (MGP_PahariEiJ_G0018091) #34	Pctp (MGP_PahariEiJ_G0018090) #35	MGP_PahariEiJ_G0018089 #36	MGP_PahariEiJ_G0018088	Nog (MGP_PahariEiJ_G0018087) #37	Gm525 (MGP_PahariEiJ_G0018086)	Dgke (MGP_PahariEiJ_G0018085)	Trim25 (MGP_PahariEiJ_G0018084)