Euteleostomi	ANCESTRAL SPECIES	457																ENSGT00940000161057 #22	ENSGT00390000014139	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00940000161895	ENSGT00530000063174.b	ENSGT00390000014682	ENSGT00940000161445
Sarcopterygii	ANCESTRAL SPECIES	65	ENSGT00940000160500	ENSGT00940000160281	ENSGT00530000063174.b	ENSGT00940000161634 #13	ENSGT01100000263504.a.b.a.b.a.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00940000158431.a.a.a.a.b.a	ENSGT01030000234640	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00390000014139	ENSGT00390000014682	ENSGT00940000161445	ENSGT00440000037341.b.b	ENSGT00940000159883	ENSGT00940000155288.b	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000160378	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d
Tetrapoda	ANCESTRAL SPECIES	37	ENSGT00940000160281	ENSGT00940000161634 #13	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000171204	ENSGT01100000263504.a.b.a.a	ENSGT01090000260005.a.b.a.b.b	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000161901	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00940000158431.a.a.a.a.b.a	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00390000014139	ENSGT00390000014682	ENSGT00940000161445	ENSGT00440000037341.b.b	ENSGT00940000159883	ENSGT00940000155288.b	ENSGT00940000160308	ENSGT00390000009409	ENSGT01050000246816	ENSGT00940000160378	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00940000157514.a	ENSGT00940000161595
Amniota	ANCESTRAL SPECIES	34	ENSGT00940000160500	ENSGT00940000160281	ENSGT00940000161634 #13	ENSGT01100000263504.a.b.a.b.a.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000161901	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00940000158431.a.a.a.a.b.a	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00390000014139	ENSGT00390000014682	ENSGT00940000170834	ENSGT00940000161445	ENSGT00440000037341.b.b	ENSGT00940000159883	ENSGT00940000155288.b	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000162381	ENSGT00940000157514.a
Mammalia	ANCESTRAL SPECIES	48	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00940000160281	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00990000206928	ENSGT00390000014139	ENSGT00390000014682	ENSGT00940000170834	ENSGT00940000161445	ENSGT00440000037341.b.a.l	ENSGT00940000159883	ENSGT00940000155288.b	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000161901	ENSGT00940000155398	ENSGT00940000160378	ENSGT00940000159610
Theria	ANCESTRAL SPECIES	27	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00940000160281	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Eutheria	ANCESTRAL SPECIES	29	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000166546	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000154432 #11	ENSGT00940000163805	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00990000206928	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000154432 #11	ENSGT00940000163805	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Primates	ANCESTRAL SPECIES	15	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Haplorrhini	ANCESTRAL SPECIES	16	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Simiiformes	ANCESTRAL SPECIES	16	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069.e.b #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00910000148361	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000164595.a	ENSGT00940000161069.e.b #14	ENSGT00390000017267.i.b ##16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00910000148361	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007.i.b ##27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Cercopithecidae	ANCESTRAL SPECIES	12	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000164595.a	ENSGT00940000161069.e.b #14	ENSGT00390000017267.i.b ##16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00710000107236	ENSGT00550000075007.i.b ##27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000164595.a	ENSGT00940000161069.e.b #14	ENSGT00390000017267.i.b ##16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007.i.b.b ##27	ENSGT00550000075007.j #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000164595.a	ENSGT00940000161069.e.b #14	ENSGT00390000017267.i.b ##16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00710000107236	ENSGT00550000075007.i.b.a ##27	ENSGT00390000002767 #26	ENSGT00550000075007.j #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33
Macaca	ANCESTRAL SPECIES	12	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000164595.a	ENSGT00940000161069.e.b #14	ENSGT00390000017267.i.b ##16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007.j #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00940000161627.a.a.a.b.b.b.a.a.a.a.d #7	ENSGT00940000157783 #8	ENSGT01030000234606.a.b.d #9	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000164595.a	ENSGT00390000017267.j #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007.j #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Crab-eating macaque	MODERN SPECIES	10	ENSMFAG00000061337 #7	LIG1 (ENSMFAG00000010948) #8	PLA2G4C (ENSMFAG00000045458) #9	ENSMFAG00000035166 #10	SULT2A1 (ENSMFAG00000046325) #11	ENSMFAG00000052649 #12	CRX (ENSMFAG00000039279) #13	SELENOW (ENSMFAG00000057852) #14	ENSMFAG00000051508 #15	NOP53 (ENSMFAG00000045103) #16	EHD2 (ENSMFAG00000045476) #17	ZNF541 (ENSMFAG00000008705) #18	NAPA (ENSMFAG00000000053) #19	KPTN (ENSMFAG00000039746) #20	SLC8A2 (ENSMFAG00000037527) #21	MEIS3 (ENSMFAG00000034069) #22	C5AR2 (ENSMFAG00000064310) #23	C5AR1 (ENSMFAG00000064601) #24	CCDC9 (ENSMFAG00000002381) #25	BBC3 (ENSMFAG00000033464) #26	SAE1 (ENSMFAG00000046126) #27	ENSMFAG00000048737 #28	ENSMFAG00000001653 #29	NPAS1 (ENSMFAG00000018045) #30	ARHGAP35 (ENSMFAG00000041192) #31	AP2S1 (ENSMFAG00000022670) #32	SLC1A5 (ENSMFAG00000044927) #33	STRN4 (ENSMFAG00000035843) #34	PRKD2 (ENSMFAG00000045883) #35	ENSMFAG00000030779 #36	ENSMFAG00000044510 #37
Rhesus	MODERN SPECIES	10	PLA2G4C (ENSMMUG00000014293) #9	ELSPBP1 (ENSMMUG00000006857) #10	BSPH1 (ENSMMUG00000058643)	SULT2A1 (ENSMMUG00000056800) #11	ENSMMUG00000059253 ##12	CRX (ENSMMUG00000049999) #13	TPRX1 (ENSMMUG00000048019)	ENSMMUG00000061457 #15	NOP53 (ENSMMUG00000013348) ##16	EHD2 (ENSMMUG00000040121) #17	BICRA (ENSMMUG00000019356)	ZNF541 (ENSMMUG00000014729) #18	NAPA (ENSMMUG00000014727) #19	KPTN (ENSMMUG00000014723) #20	SLC8A2 (ENSMMUG00000014718) #21	MEIS3 (ENSMMUG00000013009) #22	DHX34 (ENSMMUG00000009275)	C5AR2 (ENSMMUG00000009277) #23	C5AR1 (ENSMMUG00000009278) #24	CCDC9 (ENSMMUG00000003075) #25	ENSMMUG00000012466	ENSMMUG00000055893 ##7	SAE1 (ENSMMUG00000009506) #27	ZC3H4 (ENSMMUG00000014709)	TMEM160 (ENSMMUG00000057454) #29	NPAS1 (ENSMMUG00000011330) #30	ARHGAP35 (ENSMMUG00000011332) #31	AP2S1 (ENSMMUG00000000833) #32	SLC1A5 (ENSMMUG00000022163) #33	FKRP (ENSMMUG00000028743)	STRN4 (ENSMMUG00000017930) #34
Pig-tailed macaque	MODERN SPECIES	551	PLA2G4C (ENSMNEG00000029999) #9	CABP5 (ENSMNEG00000029058)	ELSPBP1 (ENSMNEG00000027813) #10	BSPH1 (ENSMNEG00000029609)	SULT2A1 (ENSMNEG00000038830) #11	CRX (ENSMNEG00000032189) #13	TPRX1 (ENSMNEG00000041107)	SELENOW (ENSMNEG00000035729) #14	ENSMNEG00000042540 ##16	EHD2 (ENSMNEG00000029528) #17	BICRA (ENSMNEG00000045550)	ZNF541 (ENSMNEG00000031984) #18	NAPA (ENSMNEG00000033334) #19	KPTN (ENSMNEG00000035130) #20	SLC8A2 (ENSMNEG00000032344) #21	MEIS3 (ENSMNEG00000045404) #22	DHX34 (ENSMNEG00000038649)	C5AR1 (ENSMNEG00000040235) #24	CCDC9 (ENSMNEG00000029240) #25	ENSMNEG00000009958	ENSMNEG00000024262 #27	ZC3H4 (ENSMNEG00000039406)	TMEM160 (ENSMNEG00000026327) #29	NPAS1 (ENSMNEG00000038438) #30	ARHGAP35 (ENSMNEG00000029940) #31	AP2S1 (ENSMNEG00000036216) #32	SLC1A5 (ENSMNEG00000040803) #33	FKRP (ENSMNEG00000013306)	STRN4 (ENSMNEG00000042544) #34	PRKD2 (ENSMNEG00000038676) #35	DACT3 (ENSMNEG00000005969) #36
Cercopithecinae_b	ANCESTRAL SPECIES	23	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000164595.a	ENSGT00940000161069.e.b #14	ENSGT00390000017267.i.b ##16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00710000107236	ENSGT00550000075007.i.b.a ##27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Cercopithecinae_d	ANCESTRAL SPECIES	9	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000164595.a	ENSGT00940000161069.e.b #14	ENSGT00390000017267.i.b ##16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00710000107236	ENSGT00550000075007.i.b.a ##27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35	ENSGT00950000183181.B.b #36
Sooty mangabey	MODERN SPECIES	228	PLA2G4C (ENSCATG00000014087) #9	CABP5 (ENSCATG00000038717)	ELSPBP1 (ENSCATG00000039398) #10	BSPH1 (ENSCATG00000035095)	SULT2A1 (ENSCATG00000030367) #11	CRX (ENSCATG00000042146) #13	TPRX1 (ENSCATG00000035099)	SELENOW (ENSCATG00000023895) #14	ENSCATG00000032842 ##16	EHD2 (ENSCATG00000013287) #17	BICRA (ENSCATG00000043087)	ZNF541 (ENSCATG00000036460) #18	NAPA (ENSCATG00000039365) #19	KPTN (ENSCATG00000031555) #20	SLC8A2 (ENSCATG00000019815) #21	MEIS3 (ENSCATG00000044534) #22	DHX34 (ENSCATG00000032316)	C5AR1 (ENSCATG00000032999) #24	CCDC9 (ENSCATG00000023465) #25	ENSCATG00000044506	SAE1 (ENSCATG00000041175) ##27	ZC3H4 (ENSCATG00000039046)	TMEM160 (ENSCATG00000017019) #29	NPAS1 (ENSCATG00000044490) #30	ARHGAP35 (ENSCATG00000025751) #31	AP2S1 (ENSCATG00000030501) #32	SLC1A5 (ENSCATG00000041986) #33	FKRP (ENSCATG00000015421)	STRN4 (ENSCATG00000041998) #34	PRKD2 (ENSCATG00000012657) #35	DACT3 (ENSCATG00000028958) #36
Drill	MODERN SPECIES	254	ENSMLEG00000013732	LIG1 (ENSMLEG00000024179) #8	PLA2G4C (ENSMLEG00000035538) #9	CABP5 (ENSMLEG00000029590)	ELSPBP1 (ENSMLEG00000044354) #10	SULT2A1 (ENSMLEG00000014855) #11	CRX (ENSMLEG00000010899) #13	SELENOW (ENSMLEG00000014481) #14	ENSMLEG00000032475 ##16	EHD2 (ENSMLEG00000044265) #17	BICRA (ENSMLEG00000030433)	ZNF541 (ENSMLEG00000029328) #18	NAPA (ENSMLEG00000044028) #19	KPTN (ENSMLEG00000038643) #20	SLC8A2 (ENSMLEG00000041982) #21	MEIS3 (ENSMLEG00000034525) #22	DHX34 (ENSMLEG00000041860)	C5AR1 (ENSMLEG00000034392) #24	CCDC9 (ENSMLEG00000042193) #25	ENSMLEG00000038746	ENSMLEG00000042254 #27	ZC3H4 (ENSMLEG00000007946)	ENSMLEG00000038871 #30	ARHGAP35 (ENSMLEG00000042586) #31	AP2S1 (ENSMLEG00000034145) #32	SLC1A5 (ENSMLEG00000039768) #33	STRN4 (ENSMLEG00000039813) #34	PRKD2 (ENSMLEG00000041161) #35	ENSMLEG00000042860 #36	GNG8 (ENSMLEG00000041963) #37	PTGIR (ENSMLEG00000039111)
Vervet Monkey	MODERN SPECIES	25	LIG1 (ENSCSAG00000002897) #8	PLA2G4C (ENSCSAG00000002903) #9	CABP5 (ENSCSAG00000002905)	ELSPBP1 (ENSCSAG00000002911) #10	BSPH1 (ENSCSAG00000002916)	SULT2A1 (ENSCSAG00000002919) #11	CRX (ENSCSAG00000002921) #13	SELENOW (ENSCSAG00000002926) #14	ENSCSAG00000002928 ##16	EHD2 (ENSCSAG00000002930) #17	BICRA (ENSCSAG00000002933)	ENSCSAG00000002936 #18	NAPA (ENSCSAG00000002939) #19	KPTN (ENSCSAG00000002944) #20	SLC8A2 (ENSCSAG00000002946) #21	MEIS3 (ENSCSAG00000002950) #22	DHX34 (ENSCSAG00000002965)	C5AR2 (ENSCSAG00000019638) #23	C5AR1 (ENSCSAG00000002973) #24	ENSCSAG00000019637	CCDC9 (ENSCSAG00000002974) #25	BBC3 (ENSCSAG00000002981) #26	SAE1 (ENSCSAG00000002984) ##27	ZC3H4 (ENSCSAG00000002989)	TMEM160 (ENSCSAG00000002993) #29	NPAS1 (ENSCSAG00000003006) #30	ARHGAP35 (ENSCSAG00000003015) #31	ENSCSAG00000019636	ENSCSAG00000003016 #33	FKRP (ENSCSAG00000019635)	STRN4 (ENSCSAG00000003022) #34
Rhinopithecus	ANCESTRAL SPECIES	16	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000164595.a	ENSGT00940000161069.e.b #14	ENSGT00390000017267.i.b ##16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00710000107236	ENSGT00550000075007.i.b ##27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Black snub-nosed monkey	MODERN SPECIES	111	PLA2G4C (ENSRBIG00000031023) #9	CABP5 (ENSRBIG00000043674)	ELSPBP1 (ENSRBIG00000039740) #10	BSPH1 (ENSRBIG00000043547)	SULT2A1 (ENSRBIG00000035608) #11	ENSRBIG00000039568	TPRX1 (ENSRBIG00000031002)	SELENOW (ENSRBIG00000031185) #14	ENSRBIG00000036427 ##16	EHD2 (ENSRBIG00000035965) #17	BICRA (ENSRBIG00000039397)	ZNF541 (ENSRBIG00000027044) #18	NAPA (ENSRBIG00000027994) #19	KPTN (ENSRBIG00000039197) #20	SLC8A2 (ENSRBIG00000030127) #21	MEIS3 (ENSRBIG00000027626) #22	DHX34 (ENSRBIG00000037382)	CCDC9 (ENSRBIG00000035248) #25	ENSRBIG00000031139	SAE1 (ENSRBIG00000037933) ##27	ZC3H4 (ENSRBIG00000027984)	TMEM160 (ENSRBIG00000039420) #29	NPAS1 (ENSRBIG00000042290) #30	ENSRBIG00000034879	ENSRBIG00000029587	AACS (ENSRBIG00000039115)	BRI3BP (ENSRBIG00000032003)	DHX37 (ENSRBIG00000043457)	ENSRBIG00000028284	ENSRBIG00000023396	SCARB1 (ENSRBIG00000041753)
Golden snub-nosed monkey	MODERN SPECIES	2027	PLA2G4C (ENSRROG00000042138) #9	CABP5 (ENSRROG00000042418)	ELSPBP1 (ENSRROG00000042315) #10	BSPH1 (ENSRROG00000045761)	SULT2A1 (ENSRROG00000034211) #11	CRX (ENSRROG00000025759) #13	TPRX1 (ENSRROG00000043121)	SELENOW (ENSRROG00000030554) #14	ENSRROG00000042298 ##16	EHD2 (ENSRROG00000043148) #17	BICRA (ENSRROG00000026604)	ZNF541 (ENSRROG00000044146) #18	NAPA (ENSRROG00000037389) #19	KPTN (ENSRROG00000036495) #20	SLC8A2 (ENSRROG00000045566) #21	MEIS3 (ENSRROG00000029017) #22	DHX34 (ENSRROG00000042872)	C5AR1 (ENSRROG00000034629) #24	INAFM1 (ENSRROG00000036821)	CCDC9 (ENSRROG00000025974) #25	ENSRROG00000040712	SAE1 (ENSRROG00000031746) ##27	ZC3H4 (ENSRROG00000032920)	TMEM160 (ENSRROG00000043669) #29	NPAS1 (ENSRROG00000043828) #30	ARHGAP35 (ENSRROG00000035853) #31	AP2S1 (ENSRROG00000045451) #32	SLC1A5 (ENSRROG00000038480) #33	FKRP (ENSRROG00000007497)	STRN4 (ENSRROG00000042099) #34	PRKD2 (ENSRROG00000034944) #35
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000154432 #11	ENSGT00960000191916	ENSGT00940000161634 #13	ENSGT00940000164595.a	ENSGT00940000161069.e.b #14	ENSGT00390000017267.i.a.a ##16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00910000148361	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007.i.b ##27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Gibbon	MODERN SPECIES	7	CATSPERD (ENSNLEG00000013718)	ENSNLEG00000013730	DUS3L (ENSNLEG00000013734)	NRTN (ENSNLEG00000013785)	ENSNLEG00000034850	ENSNLEG00000013795	ENSNLEG00000003385	ENSNLEG00000030217 ##14	ENSNLEG00000003143 ##16	ENSNLEG00000034480 #17	ENSNLEG00000003119	ENSNLEG00000034044 #18	ENSNLEG00000031845	KPTN (ENSNLEG00000003092) #20	ENSNLEG00000003082 #21	MEIS3 (ENSNLEG00000003031) #22	DHX34 (ENSNLEG00000003010)	C5AR1 (ENSNLEG00000018412) #24	INAFM1 (ENSNLEG00000018411)	CCDC9 (ENSNLEG00000002990) #25	ENSNLEG00000018410	ENSNLEG00000002975	SAE1 (ENSNLEG00000002965) ##27	ZC3H4 (ENSNLEG00000034259)	TMEM160 (ENSNLEG00000002960) #29	NPAS1 (ENSNLEG00000002946) #30	ARHGAP35 (ENSNLEG00000002923) #31	AP2S1 (ENSNLEG00000002895) #32	ENSNLEG00000029695 #33	ENSNLEG00000035781	STRN4 (ENSNLEG00000002817) #34
Hominidae	ANCESTRAL SPECIES		ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000154432 #11	ENSGT00960000191916	ENSGT00940000161634 #13	ENSGT00940000164595.a	ENSGT00940000161069.e.b #14	ENSGT00390000017267.i.a.a ##16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00910000148361	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007.i.b ##27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Orangutan	MODERN SPECIES	10	ENSPPYG00000010188	PLA2G4C (ENSPPYG00000010187) #9	CABP5 (ENSPPYG00000010186)	ELSPBP1 (ENSPPYG00000010185) #10	BSPH1 (ENSPPYG00000035619)	SULT2A1 (ENSPPYG00000010184) #11	ENSPPYG00000030562	SELENOW (ENSPPYG00000010182) #14	ENSPPYG00000010181 ##16	EHD2 (ENSPPYG00000010180) #17	BICRA (ENSPPYG00000010179)	ZNF541 (ENSPPYG00000010178) #18	NAPA (ENSPPYG00000010177) #19	KPTN (ENSPPYG00000010176) #20	SLC8A2 (ENSPPYG00000010175) #21	MEIS3 (ENSPPYG00000010173) #22	DHX34 (ENSPPYG00000010172)	C5AR2 (ENSPPYG00000010171) #23	C5AR1 (ENSPPYG00000032120) #24	CCDC9 (ENSPPYG00000010170) #25	ENSPPYG00000010169	SAE1 (ENSPPYG00000010168) ##27	ZC3H4 (ENSPPYG00000010167)	TMEM160 (ENSPPYG00000032917) #29	NPAS1 (ENSPPYG00000010165) #30	ARHGAP35 (ENSPPYG00000010164) #31	AP2S1 (ENSPPYG00000010163) #32	SLC1A5 (ENSPPYG00000010161) #33	FKRP (ENSPPYG00000010160)	STRN4 (ENSPPYG00000010159) #34	PRKD2 (ENSPPYG00000010158) #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000163003	ENSGT00940000154432 #11	ENSGT00940000164595.b	ENSGT00940000161634 #13	ENSGT00940000164595.a	ENSGT00910000147896	ENSGT00940000161069.e.b.a #14	ENSGT00390000017267.i.a.a ##16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00910000148361	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007.i.b ##27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000163003	ENSGT00940000154432 #11	ENSGT00940000164595.b	ENSGT00940000161634 #13	ENSGT00940000164595.a	ENSGT00910000147896	ENSGT00940000161069.e.b.a #14	ENSGT00390000017267.i.a.a ##16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00910000148361	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007.i.b ##27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Pan	ANCESTRAL SPECIES	9	ENSGT00940000154432.f #11	ENSGT00940000164595.b	ENSGT00940000161634 #13	ENSGT00940000164595.a	ENSGT00910000147896	ENSGT00940000161069.e.b.a #14	ENSGT00390000017267.i.a.a ##16	ENSGT00390000017267.i.a.b ##16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00910000148361	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007.i.b ##27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Chimpanzee	MODERN SPECIES	10	ELSPBP1 (ENSPTRG00000011221) #10	BSPH1 (ENSPTRG00000011220)	SULT2A1 (ENSPTRG00000011219) #11	ENSPTRG00000052710	CRX (ENSPTRG00000011217) #13	TPRX1 (ENSPTRG00000028949)	ENSPTRG00000049635	SELENOW (ENSPTRG00000011216) #14	NOP53 (ENSPTRG00000011215) ##16	EHD2 (ENSPTRG00000011214) #17	ENSPTRG00000011213	ZNF541 (ENSPTRG00000011212) #18	NAPA (ENSPTRG00000011211) #19	KPTN (ENSPTRG00000011210) #20	SLC8A2 (ENSPTRG00000011209) #21	MEIS3 (ENSPTRG00000011208) #22	DHX34 (ENSPTRG00000011207)	C5AR2 (ENSPTRG00000041525) #23	C5AR1 (ENSPTRG00000028958) #24	INAFM1 (ENSPTRG00000040861)	CCDC9 (ENSPTRG00000011204) #25	BBC3 (ENSPTRG00000011203)	SAE1 (ENSPTRG00000011202) ##27	ZC3H4 (ENSPTRG00000011201)	TMEM160 (ENSPTRG00000011200) #29	NPAS1 (ENSPTRG00000011199) #30	ARHGAP35 (ENSPTRG00000011198) #31	AP2S1 (ENSPTRG00000011197) #32	SLC1A5 (ENSPTRG00000011194) #33	FKRP (ENSPTRG00000050198)	STRN4 (ENSPTRG00000011192) #34
Bonobo	MODERN SPECIES	10	PLA2G4C (ENSPPAG00000043463) #9	CABP5 (ENSPPAG00000039821)	ELSPBP1 (ENSPPAG00000020685) #10	BSPH1 (ENSPPAG00000043793)	SULT2A1 (ENSPPAG00000041390) #11	ENSPPAG00000037685	SELENOW (ENSPPAG00000036760) #14	ENSPPAG00000032995 ##16	EHD2 (ENSPPAG00000039669) #17	BICRA (ENSPPAG00000003935)	ZNF541 (ENSPPAG00000039092) #18	NAPA (ENSPPAG00000033696) #19	KPTN (ENSPPAG00000008738) #20	SLC8A2 (ENSPPAG00000030149) #21	ENSPPAG00000024281	ENSPPAG00000016062 #22	DHX34 (ENSPPAG00000029582)	C5AR2 (ENSPPAG00000023287) #23	C5AR1 (ENSPPAG00000027323) #24	CCDC9 (ENSPPAG00000036850) #25	ENSPPAG00000039786 #26	SAE1 (ENSPPAG00000032113) ##27	ZC3H4 (ENSPPAG00000037610)	TMEM160 (ENSPPAG00000040416) #29	NPAS1 (ENSPPAG00000040385) #30	ARHGAP35 (ENSPPAG00000035858) #31	ENSPPAG00000021619 #32	SLC1A5 (ENSPPAG00000040539) #33	FKRP (ENSPPAG00000037227)	STRN4 (ENSPPAG00000035898) #34	PRKD2 (ENSPPAG00000037267) #35
Human	MODERN SPECIES	10	CABP5 (ENSG00000105507)	ELSPBP1 (ENSG00000169393) #10	BSPH1 (ENSG00000188334)	SULT2A1 (ENSG00000105398) #11	TPRX2 (ENSG00000259009)	CRX (ENSG00000105392) #13	TPRX1 (ENSG00000178928)	SELENOW (ENSG00000178980) #14	NOP53 (ENSG00000105373) ##16	EHD2 (ENSG00000024422) #17	BICRA (ENSG00000063169)	ZNF541 (ENSG00000118156) #18	NAPA (ENSG00000105402) #19	KPTN (ENSG00000118162) #20	SLC8A2 (ENSG00000118160) #21	MEIS3 (ENSG00000105419) #22	DHX34 (ENSG00000134815)	C5AR2 (ENSG00000134830) #23	C5AR1 (ENSG00000197405) #24	INAFM1 (ENSG00000257704)	CCDC9 (ENSG00000105321) #25	BBC3 (ENSG00000105327) #26	SAE1 (ENSG00000142230) ##27	ZC3H4 (ENSG00000130749)	TMEM160 (ENSG00000130748) #29	NPAS1 (ENSG00000130751) #30	ARHGAP35 (ENSG00000160007) #31	AP2S1 (ENSG00000042753) #32	SLC1A5 (ENSG00000105281) #33	FKRP (ENSG00000181027)	STRN4 (ENSG00000090372) #34
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	18	RNF112 (ENSGGOG00000001030)	SLC47A1 (ENSGGOG00000016236)	ALDH3A2 (ENSGGOG00000007664)	SLC47A2 (ENSGGOG00000007670)	ALDH3A1 (ENSGGOG00000007682)	ENSGGOG00000042248	ULK2 (ENSGGOG00000007689)	AKAP10 (ENSGGOG00000034845)	ENSGGOG00000040814	ENSGGOG00000024511	SPECC1 (ENSGGOG00000001874)	ENSGGOG00000042226	ENSGGOG00000041219	ENSGGOG00000021951	ENSGGOG00000004314	ENSGGOG00000027850 #22	ENSGGOG00000038364	ENSGGOG00000016448	ENSGGOG00000009640	USP22 (ENSGGOG00000008595)	DHRS7B (ENSGGOG00000008471)	TMEM11 (ENSGGOG00000008476)	NATD1 (ENSGGOG00000016265)	MAP2K3 (ENSGGOG00000000670)	KCNJ18 (ENSGGOG00000040998)	ENSGGOG00000041142	WSB1 (ENSGGOG00000015361)	ENSGGOG00000040351	KSR1 (ENSGGOG00000000817)	LGALS9 (ENSGGOG00000022973)	NOS2 (ENSGGOG00000000820)
Gorilla	MODERN SPECIES	10	ELSPBP1 (ENSGGOG00000001477) #10	BSPH1 (ENSGGOG00000000055)	SULT2A1 (ENSGGOG00000012156) #11	TPRX2 (ENSGGOG00000040885)	CRX (ENSGGOG00000016158) #13	TPRX1 (ENSGGOG00000009265)	ENSGGOG00000040974	SELENOW (ENSGGOG00000012269) #14	NOP53 (ENSGGOG00000005462) ##16	EHD2 (ENSGGOG00000002346) #17	BICRA (ENSGGOG00000012809)	ZNF541 (ENSGGOG00000000277) #18	NAPA (ENSGGOG00000000703) #19	KPTN (ENSGGOG00000000702) #20	SLC8A2 (ENSGGOG00000011557) #21	ENSGGOG00000001093 #22	DHX34 (ENSGGOG00000010037)	C5AR2 (ENSGGOG00000016452) #23	C5AR1 (ENSGGOG00000008622) #24	INAFM1 (ENSGGOG00000027893)	CCDC9 (ENSGGOG00000015097) #25	ENSGGOG00000040116	SAE1 (ENSGGOG00000013078) ##27	ENSGGOG00000039096	ZC3H4 (ENSGGOG00000013071)	TMEM160 (ENSGGOG00000013410) #29	NPAS1 (ENSGGOG00000013398) #30	ARHGAP35 (ENSGGOG00000027302) #31	ENSGGOG00000011254 #32	SLC1A5 (ENSGGOG00000008792) #33	FKRP (ENSGGOG00000043279)
Platyrrhini	ANCESTRAL SPECIES	20	ENSGT00390000011694	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000154432.g #11	ENSGT00940000161634 #13	ENSGT00940000161069.e.b #14	ENSGT00940000161069.e.a ##14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00910000148361	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00710000107236	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Cebidae	ANCESTRAL SPECIES	8	ENSGT00940000157783 #8	ENSGT00390000011694	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000154432.g #11	ENSGT00940000161634 #13	ENSGT00940000161069.e.b #14	ENSGT00940000161069.e.a ##14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Marmoset	MODERN SPECIES	14	CARD8 (ENSCJAG00000000489)	LIG1 (ENSCJAG00000000504) #8	ENSCJAG00000076045	ENSCJAG00000071055	CABP5 (ENSCJAG00000008133)	SULT2A1 (ENSCJAG00000005269) #11	CRX (ENSCJAG00000078298) #13	SELENOW (ENSCJAG00000043185) #14	NOP53 (ENSCJAG00000011385) #16	EHD2 (ENSCJAG00000011415) #17	BICRA (ENSCJAG00000011418)	ZNF541 (ENSCJAG00000011435) #18	NAPA (ENSCJAG00000042205) #19	KPTN (ENSCJAG00000011460) #20	SLC8A2 (ENSCJAG00000070619) #21	MEIS3 (ENSCJAG00000011475) #22	DHX34 (ENSCJAG00000011504)	ENSCJAG00000072119	C5AR2 (ENSCJAG00000011534) #23	C5AR1 (ENSCJAG00000073054) #24	INAFM1 (ENSCJAG00000074475)	CCDC9 (ENSCJAG00000011548) #25	ENSCJAG00000083080	SAE1 (ENSCJAG00000011565) #27	ZC3H4 (ENSCJAG00000011601)	TMEM160 (ENSCJAG00000082760) #29	NPAS1 (ENSCJAG00000076811) #30	ARHGAP35 (ENSCJAG00000011701) #31	ENSCJAG00000072578	ENSCJAG00000011710 #32	SLC1A5 (ENSCJAG00000011717) #33
Cebidae_a	ANCESTRAL SPECIES	20	ENSGT00830000128447	ENSGT00940000157783 #8	ENSGT00390000011694	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000154432.g #11	ENSGT00940000161634 #13	ENSGT00940000161069.e.a ##14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35	ENSGT00950000183181.B.b #36
Capuchin	MODERN SPECIES	266	ENSCCAG00000030878	LIG1 (ENSCCAG00000022254) #8	ZSWIM9 (ENSCCAG00000022754)	CABP5 (ENSCCAG00000029328)	ENSCCAG00000027792 #10	SULT2A1 (ENSCCAG00000020859) #11	CRX (ENSCCAG00000034793) #13	ENSCCAG00000024879 ##14	NOP53 (ENSCCAG00000025477) #16	EHD2 (ENSCCAG00000035777) #17	BICRA (ENSCCAG00000026467)	ZNF541 (ENSCCAG00000037140) #18	NAPA (ENSCCAG00000033321) #19	KPTN (ENSCCAG00000027753) #20	SLC8A2 (ENSCCAG00000014965) #21	MEIS3 (ENSCCAG00000003816) #22	DHX34 (ENSCCAG00000028675)	C5AR1 (ENSCCAG00000035091) #24	CCDC9 (ENSCCAG00000028908) #25	ENSCCAG00000026596	SAE1 (ENSCCAG00000031780) #27	ZC3H4 (ENSCCAG00000037597)	TMEM160 (ENSCCAG00000031011) #29	NPAS1 (ENSCCAG00000032406) #30	ENSCCAG00000021097	ARHGAP35 (ENSCCAG00000022601) #31	AP2S1 (ENSCCAG00000028431) #32	SLC1A5 (ENSCCAG00000033717) #33	FKRP (ENSCCAG00000015087)	STRN4 (ENSCCAG00000034066) #34	PRKD2 (ENSCCAG00000032043) #35
Mas night monkey	MODERN SPECIES	1284	LIG1 (ENSANAG00000025847) #8	ZSWIM9 (ENSANAG00000037000)	CABP5 (ENSANAG00000036055)	ELSPBP1 (ENSANAG00000021618) #10	SULT2A1 (ENSANAG00000008443) #11	CRX (ENSANAG00000036213) #13	ENSANAG00000038368	NOP53 (ENSANAG00000007933) #16	EHD2 (ENSANAG00000031077) #17	BICRA (ENSANAG00000021909)	ZNF541 (ENSANAG00000034121) #18	NAPA (ENSANAG00000029662) #19	KPTN (ENSANAG00000030248) #20	SLC8A2 (ENSANAG00000033218) #21	ENSANAG00000034504	MEIS3 (ENSANAG00000037100) #22	DHX34 (ENSANAG00000038287)	C5AR1 (ENSANAG00000031163) #24	INAFM1 (ENSANAG00000035853)	CCDC9 (ENSANAG00000020361) #25	ENSANAG00000037922	SAE1 (ENSANAG00000023379) #27	ZC3H4 (ENSANAG00000023963)	TMEM160 (ENSANAG00000026707) #29	NPAS1 (ENSANAG00000036771) #30	ARHGAP35 (ENSANAG00000000237) #31	ENSANAG00000022565	AP2S1 (ENSANAG00000024767) #32	SLC1A5 (ENSANAG00000021437) #33	FKRP (ENSANAG00000019314)	STRN4 (ENSANAG00000032421) #34
Tarsier	MODERN SPECIES	2205																MEIS3 (ENSTSYG00000028178) #22	DHX34 (ENSTSYG00000031168)
Strepsirrhini	ANCESTRAL SPECIES	16	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Bushbaby	MODERN SPECIES	267					ENSOGAG00000030968 #11	ENSOGAG00000025340	CRX (ENSOGAG00000034554) #13	ENSOGAG00000028694	NOP53 (ENSOGAG00000024300) #16	EHD2 (ENSOGAG00000033142) #17	BICRA (ENSOGAG00000002399)	ZNF541 (ENSOGAG00000002397) #18	NAPA (ENSOGAG00000032621) #19	KPTN (ENSOGAG00000009999) #20	SLC8A2 (ENSOGAG00000029237) #21	MEIS3 (ENSOGAG00000002063) #22	DHX34 (ENSOGAG00000002061)	C5AR2 (ENSOGAG00000033946) #23	C5AR1 (ENSOGAG00000000133) #24	INAFM1 (ENSOGAG00000029523)	CCDC9 (ENSOGAG00000015701) #25	BBC3 (ENSOGAG00000034738) #26	SAE1 (ENSOGAG00000007650) #27	ZC3H4 (ENSOGAG00000031123)	TMEM160 (ENSOGAG00000033520) #29	NPAS1 (ENSOGAG00000012829) #30	ARHGAP35 (ENSOGAG00000033334) #31	AP2S1 (ENSOGAG00000033467) #32	SLC1A5 (ENSOGAG00000033704) #33	FKRP (ENSOGAG00000026248)	STRN4 (ENSOGAG00000015276) #34
Lemuriformes	ANCESTRAL SPECIES	15	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Mouse lemur	MODERN SPECIES	14	LIG1 (ENSMICG00000007160) #8	CABP5 (ENSMICG00000007151)	ELSPBP1 (ENSMICG00000007142) #10	ENSMICG00000041886	SULT2A1 (ENSMICG00000037551) #11	ENSMICG00000035603	CRX (ENSMICG00000042307) #13	SELENOW (ENSMICG00000012606) #14	NOP53 (ENSMICG00000005580) #16	EHD2 (ENSMICG00000005571) #17	BICRA (ENSMICG00000028080)	ZNF541 (ENSMICG00000017737) #18	NAPA (ENSMICG00000011599) #19	KPTN (ENSMICG00000026946) #20	SLC8A2 (ENSMICG00000030836) #21	MEIS3 (ENSMICG00000031566) #22	DHX34 (ENSMICG00000011585)	C5AR1 (ENSMICG00000045174) #24	CCDC9 (ENSMICG00000008823) #25	ENSMICG00000008820	SAE1 (ENSMICG00000008807) #27	ZC3H4 (ENSMICG00000008786)	TMEM160 (ENSMICG00000035539) #29	NPAS1 (ENSMICG00000006346) #30	ARHGAP35 (ENSMICG00000037921) #31	AP2S1 (ENSMICG00000038528) #32	SLC1A5 (ENSMICG00000000030) #33	FKRP (ENSMICG00000043598)	STRN4 (ENSMICG00000015400) #34	PRKD2 (ENSMICG00000015377) #35	DACT3 (ENSMICG00000042964) #36
Lemuriformes_a	ANCESTRAL SPECIES	5	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Coquerels sifaka	MODERN SPECIES	568	SMARCA1 (ENSPCOG00000020722)	ZSWIM9 (ENSPCOG00000016877)	LIG1 (ENSPCOG00000027835) #8	CABP5 (ENSPCOG00000028027)	ENSPCOG00000019131 #10	SULT2A1 (ENSPCOG00000014554) #11	CRX (ENSPCOG00000021790) #13	SELENOW (ENSPCOG00000013997) #14	NOP53 (ENSPCOG00000016124) #16	EHD2 (ENSPCOG00000010027) #17	BICRA (ENSPCOG00000017166)	ZNF541 (ENSPCOG00000006138) #18	NAPA (ENSPCOG00000014946) #19	KPTN (ENSPCOG00000022678) #20	SLC8A2 (ENSPCOG00000023795) #21	MEIS3 (ENSPCOG00000024690) #22	DHX34 (ENSPCOG00000027801)	CCDC9 (ENSPCOG00000020816) #25	ENSPCOG00000019970	SAE1 (ENSPCOG00000018619) #27	ZC3H4 (ENSPCOG00000017169)	TMEM160 (ENSPCOG00000028665) #29	NPAS1 (ENSPCOG00000017882) #30	ARHGAP35 (ENSPCOG00000015788) #31	AP2S1 (ENSPCOG00000022192) #32	SLC1A5 (ENSPCOG00000024625) #33	FKRP (ENSPCOG00000008360)	STRN4 (ENSPCOG00000028165) #34	PRKD2 (ENSPCOG00000018544) #35	DACT3 (ENSPCOG00000024045) #36	GNG8 (ENSPCOG00000014293) #37
Greater bamboo lemur	MODERN SPECIES	67	ZSWIM9 (ENSPSMG00000024028)	LIG1 (ENSPSMG00000024001) #8	CABP5 (ENSPSMG00000023902)	ELSPBP1 (ENSPSMG00000023896) #10	BSPH1 (ENSPSMG00000023887)	ENSPSMG00000023884	SULT2A1 (ENSPSMG00000023880) #11	CRX (ENSPSMG00000023876) #13	SELENOW (ENSPSMG00000023871) #14	NOP53 (ENSPSMG00000023860) #16	EHD2 (ENSPSMG00000023831) #17	ZNF541 (ENSPSMG00000023826) #18	NAPA (ENSPSMG00000023803) #19	KPTN (ENSPSMG00000023747) #20	SLC8A2 (ENSPSMG00000023733) #21	MEIS3 (ENSPSMG00000023720) #22	DHX34 (ENSPSMG00000023684)	C5AR2 (ENSPSMG00000023674) #23	C5AR1 (ENSPSMG00000023671) #24	INAFM1 (ENSPSMG00000023664)	CCDC9 (ENSPSMG00000023662) #25	BBC3 (ENSPSMG00000023660) #26	SAE1 (ENSPSMG00000023654) #27	ENSPSMG00000023638	ZC3H4 (ENSPSMG00000023633)	TMEM160 (ENSPSMG00000023618) #29	NPAS1 (ENSPSMG00000023615) #30
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Glires	ANCESTRAL SPECIES	6	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000154432 #11	ENSGT00940000163805	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Lagomorpha	ANCESTRAL SPECIES	135												ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35	ENSGT00950000183181.B.b #36
Rabbit	MODERN SPECIES	568												ZNF541 (ENSOCUG00000000969) #18	NAPA (ENSOCUG00000000967) #19	KPTN (ENSOCUG00000024733) #20	ENSOCUG00000031820 #21	MEIS3 (ENSOCUG00000025760) #22	DHX34 (ENSOCUG00000014005)	C5AR2 (ENSOCUG00000025530) #23	C5AR1 (ENSOCUG00000022167) #24	CCDC9 (ENSOCUG00000013560) #25	BBC3 (ENSOCUG00000037839) #26	SAE1 (ENSOCUG00000024320) #27	ZC3H4 (ENSOCUG00000026069)	TMEM160 (ENSOCUG00000023097) #29	NPAS1 (ENSOCUG00000016061) #30	ARHGAP35 (ENSOCUG00000017126) #31	ENSOCUG00000039332	SLC1A5 (ENSOCUG00000009144) #33	FKRP (ENSOCUG00000000122)	STRN4 (ENSOCUG00000021418) #34	PRKD2 (ENSOCUG00000026784) #35
Pika	MODERN SPECIES	1283																MEIS3 (ENSOPRG00000011915) #22	ENSOPRG00000011872	ENSOPRG00000011863 #23
Rodentia	ANCESTRAL SPECIES	8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000154432.n #11	ENSGT00940000163805	ENSGT00940000154432.m.a #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Rodentia_B	ANCESTRAL SPECIES	20	ENSGT00940000157783 #8	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432.m.a #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00940000167173	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583
Myomorpha	ANCESTRAL SPECIES	20	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432.m.b #11	ENSGT00940000154432.m.a #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Muroidea	ANCESTRAL SPECIES	18	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432.m.b #11	ENSGT00940000154432.m.a #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Muroidea_A	ANCESTRAL SPECIES	20	ENSGT00940000157783 #8	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432.m.a.c #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F	ENSGT00970000193421.A #32
Murinae	ANCESTRAL SPECIES	19	ENSGT00940000157783 #8	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432.m.a.c #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F	ENSGT00970000193421.A #32
Mus	ANCESTRAL SPECIES		ENSGT00940000157783 #8	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432.m.a.c #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F	ENSGT00970000193421.A #32
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432.m.a.c.c #11	ENSGT00390000000605.B.a	ENSGT00940000161634 #13	ENSGT00800000124482	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F.c	ENSGT00970000193421.A #32
Mus_B	ANCESTRAL SPECIES		ENSGT00940000154432.m.a.c.c.b #11	ENSGT00940000154432.m.a.c.d #11	ENSGT00390000000605.A	ENSGT00940000154432.m.b #11	ENSGT00390000000605.B.a.a	ENSGT00940000161634 #13	ENSGT00800000124482.b.a	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F.c	ENSGT00970000193421.A #32
Mouse	MODERN SPECIES	16	Obox7 (ENSMUSG00000055942)	Obox2 (ENSMUSG00000074369)	Obox1 (ENSMUSG00000054310)	Obox3 (ENSMUSG00000066772)	Obox5 (ENSMUSG00000074366)	Obox6 (ENSMUSG00000041583)	Crx (ENSMUSG00000041578) #13	Selenow (ENSMUSG00000041571) #14	Nop53 (ENSMUSG00000041560) #16	Ehd2 (ENSMUSG00000074364) #17	Bicra (ENSMUSG00000070808)	Zfp541 (ENSMUSG00000078796) #18	Napa (ENSMUSG00000006024) #19	Kptn (ENSMUSG00000006021) #20	Slc8a2 (ENSMUSG00000030376) #21	Meis3 (ENSMUSG00000041420) #22	Dhx34 (ENSMUSG00000006019)	C5ar2 (ENSMUSG00000074361) #23	C5ar1 (ENSMUSG00000049130) #24	Inafm1 (ENSMUSG00000091811)	Ccdc9 (ENSMUSG00000041375) #25	Bbc3 (ENSMUSG00000002083) #26	Sae1 (ENSMUSG00000052833) #27	Zc3h4 (ENSMUSG00000059273)	Tmem160 (ENSMUSG00000019158) #29	Npas1 (ENSMUSG00000001988) #30	Arhgap35 (ENSMUSG00000058230) #31	Ceacam15 (ENSMUSG00000078795)	Ceacam9 (ENSMUSG00000007209)	Ap2s1 (ENSMUSG00000008036) #32	Slc1a5 (ENSMUSG00000001918) #33
Mus_C	ANCESTRAL SPECIES	15	ENSGT00940000154432.m.a.c.d #11	ENSGT00390000000605.A	ENSGT00940000154432.m.b #11	ENSGT01030000234553.b.b.c.a.a.b.b.a.b.b	ENSGT00390000000605.B.a.a	ENSGT00940000161634 #13	ENSGT00800000124482.b.a	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F.c	ENSGT00970000193421.A #32
Steppe mouse	MODERN SPECIES	2772					Obox6 (ENSMSIG00000018548)	Crx (ENSMSIG00000018526) #13	ENSMSIG00000018513	Selenow (ENSMSIG00000018481) #14	Nop53 (ENSMSIG00000018430) #16	Ehd2 (ENSMSIG00000018416) #17	Bicra (ENSMSIG00000018350)	Zfp541 (ENSMSIG00000018222) #18	Napa (ENSMSIG00000018190) #19	Kptn (ENSMSIG00000018154) #20	Slc8a2 (ENSMSIG00000018129) #21	Meis3 (ENSMSIG00000018072) #22	Dhx34 (ENSMSIG00000017946)	C5ar2 (ENSMSIG00000017934) #23	C5ar1 (ENSMSIG00000017926) #24	Ccdc9 (ENSMSIG00000017868) #25	ENSMSIG00000017856 #26	Sae1 (ENSMSIG00000017811) #27	Zc3h4 (ENSMSIG00000017751)	Tmem160 (ENSMSIG00000017740) #29	Npas1 (ENSMSIG00000017698) #30	Arhgap35 (ENSMSIG00000017677) #31	ENSMSIG00000017666	Ceacam15 (ENSMSIG00000017658)	ENSMSIG00000017649	ENSMSIG00000017638 #32
Ryukyu mouse	MODERN SPECIES	16	MGP_CAROLIEiJ_G0029210 #11	Obox8 (MGP_CAROLIEiJ_G0029211)	Sult2a8 (MGP_CAROLIEiJ_G0029212) #11	MGP_CAROLIEiJ_G0029213 #11	Obox6 (MGP_CAROLIEiJ_G0029214)	Crx (MGP_CAROLIEiJ_G0029215) #13	MGP_CAROLIEiJ_G0029216	MGP_CAROLIEiJ_G0029217 #14	Nop53 (MGP_CAROLIEiJ_G0029218) #16	Ehd2 (MGP_CAROLIEiJ_G0029219) #17	Bicra (MGP_CAROLIEiJ_G0029220)	Zfp541 (MGP_CAROLIEiJ_G0029221) #18	Napa (MGP_CAROLIEiJ_G0029222) #19	Kptn (MGP_CAROLIEiJ_G0029223) #20	Slc8a2 (MGP_CAROLIEiJ_G0029224) #21	Meis3 (MGP_CAROLIEiJ_G0029225) #22	Dhx34 (MGP_CAROLIEiJ_G0029226)	C5ar2 (MGP_CAROLIEiJ_G0029227) #23	C5ar1 (MGP_CAROLIEiJ_G0029228) #24	Inafm1 (MGP_CAROLIEiJ_G0029229)	Ccdc9 (MGP_CAROLIEiJ_G0029230) #25	Bbc3 (MGP_CAROLIEiJ_G0029231) #26	Sae1 (MGP_CAROLIEiJ_G0029232) #27	MGP_CAROLIEiJ_G0029233	Tmem160 (MGP_CAROLIEiJ_G0029234) #29	Npas1 (MGP_CAROLIEiJ_G0029235) #30	Arhgap35 (MGP_CAROLIEiJ_G0029236) #31	Ceacam15 (MGP_CAROLIEiJ_G0029237)	Ceacam9 (MGP_CAROLIEiJ_G0029238)	Ap2s1 (MGP_CAROLIEiJ_G0029239) #32	Slc1a5 (MGP_CAROLIEiJ_G0029240) #33
Shrew mouse	MODERN SPECIES	10	Zswim9 (MGP_PahariEiJ_G0021066)	Lig1 (MGP_PahariEiJ_G0021067) #8	Pla2g4c (MGP_PahariEiJ_G0021068) #9	Cabp5 (MGP_PahariEiJ_G0021069)	Bsph1 (MGP_PahariEiJ_G0021070)	MGP_PahariEiJ_G0021071	Crx (MGP_PahariEiJ_G0021072) #13	MGP_PahariEiJ_G0021073 #14	MGP_PahariEiJ_G0021074 #16	Ehd2 (MGP_PahariEiJ_G0021075) #17	Bicra (MGP_PahariEiJ_G0021076)	Zfp541 (MGP_PahariEiJ_G0021077) #18	Napa (MGP_PahariEiJ_G0021078) #19	Kptn (MGP_PahariEiJ_G0021079) #20	Slc8a2 (MGP_PahariEiJ_G0021080) #21	Meis3 (MGP_PahariEiJ_G0021081) #22	Dhx34 (MGP_PahariEiJ_G0021082)	C5ar2 (MGP_PahariEiJ_G0021083) #23	C5ar1 (MGP_PahariEiJ_G0021084) #24	Inafm1 (MGP_PahariEiJ_G0021085)	Ccdc9 (MGP_PahariEiJ_G0021086) #25	Bbc3 (MGP_PahariEiJ_G0021087) #26	Sae1 (MGP_PahariEiJ_G0021088) #27	Zc3h4 (MGP_PahariEiJ_G0021089)	Tmem160 (MGP_PahariEiJ_G0021090) #29	Npas1 (MGP_PahariEiJ_G0021091) #30	Arhgap35 (MGP_PahariEiJ_G0021092) #31	Ceacam15 (MGP_PahariEiJ_G0021093)	Ceacam9 (MGP_PahariEiJ_G0021094)	Ap2s1 (MGP_PahariEiJ_G0021095) #32	Slc1a5 (MGP_PahariEiJ_G0021096) #33
Rat	MODERN SPECIES		Sult2a2 (ENSRNOG00000062869) #11	ENSRNOG00000066824	AABR07002622.1 (ENSRNOG00000038276)	Obox1 (ENSRNOG00000066811)	Crx (ENSRNOG00000013890) #13	Crxos1 (ENSRNOG00000038251)	LOC100360843 (ENSRNOG00000033146)	LOC100364427 (ENSRNOG00000062534)	Rpl9 (ENSRNOG00000028449)	Nop53 (ENSRNOG00000013023) #16	Ehd2 (ENSRNOG00000011346) #17	Bicra (ENSRNOG00000011262)	Zfp541 (ENSRNOG00000021800) #18	Napa (ENSRNOG00000001494) #19	Slc8a2 (ENSRNOG00000001492) #21	Meis3 (ENSRNOG00000021390) #22	Dhx34 (ENSRNOG00000047575)	AABR07002627.1 (ENSRNOG00000060587)	C5ar2 (ENSRNOG00000049028) #23	ENSRNOG00000066925	Inafm1 (ENSRNOG00000048848) #25	Bbc3 (ENSRNOG00000062473) #26	Sae1 (ENSRNOG00000015128) #27	Zc3h4 (ENSRNOG00000015229)	Tmem160 (ENSRNOG00000015304) #29	Npas1 (ENSRNOG00000015376) #30	Arhgap35 (ENSRNOG00000015852) #31	Gng5 (ENSRNOG00000063636)	LOC102550403 (ENSRNOG00000065825)	LOC108349752 (ENSRNOG00000028617)	Ceacam9 (ENSRNOG00000046915)
Cricetidae	ANCESTRAL SPECIES	29								ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F	ENSGT00970000193421.A #32
Cricetidae_B	ANCESTRAL SPECIES	60								ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F	ENSGT00970000193421.A #32
Northern American deer mouse	MODERN SPECIES		Ethe1 (ENSPEMG00000023092)	Phldb3 (ENSPEMG00000022660)	Lypd3 (ENSPEMG00000021920)	Tex101 (ENSPEMG00000021573)	Cd177 (ENSPEMG00000022001)	ENSPEMG00000027693	ENSPEMG00000031382	Selenow (ENSPEMG00000005090) #14	Nop53 (ENSPEMG00000006856) #16	Ehd2 (ENSPEMG00000024916) #17	Bicra (ENSPEMG00000008834)	Zfp541 (ENSPEMG00000015026) #18	Napa (ENSPEMG00000009721) #19	Kptn (ENSPEMG00000000792) #20	Slc8a2 (ENSPEMG00000002691) #21	Meis3 (ENSPEMG00000005978) #22	Dhx34 (ENSPEMG00000017613)	C5ar2 (ENSPEMG00000010321) #23	C5ar1 (ENSPEMG00000001838) #24	Inafm1 (ENSPEMG00000009541)	Ccdc9 (ENSPEMG00000015166) #25	Bbc3 (ENSPEMG00000014228) #26	Sae1 (ENSPEMG00000012499) #27	Zc3h4 (ENSPEMG00000009762)	Tmem160 (ENSPEMG00000012479) #29	Npas1 (ENSPEMG00000014696) #30	Arhgap35 (ENSPEMG00000017349) #31	ENSPEMG00000031358	Ceacam15 (ENSPEMG00000016683)	ENSPEMG00000008534	Ceacam9 (ENSPEMG00000003127)
Prairie vole	MODERN SPECIES	354	Slc27a5 (ENSMOCG00000004298)	Zbtb45 (ENSMOCG00000001388)	Trim28 (ENSMOCG00000015909)	Chmp2a (ENSMOCG00000003404)	Ube2m (ENSMOCG00000016295)	Mzf1 (ENSMOCG00000011386)	Crx (ENSMOCG00000020933) #13	ENSMOCG00000017884	Nop53 (ENSMOCG00000008367) #16	Ehd2 (ENSMOCG00000007010) #17	Bicra (ENSMOCG00000019348)	Zfp541 (ENSMOCG00000021811) #18	Napa (ENSMOCG00000006244) #19	ENSMOCG00000013711 #20	Slc8a2 (ENSMOCG00000005717) #21	Meis3 (ENSMOCG00000008970) #22	Dhx34 (ENSMOCG00000016843)	C5ar2 (ENSMOCG00000004764) #23	Ccdc9 (ENSMOCG00000020124) #25	Bbc3 (ENSMOCG00000017283) #26	ENSMOCG00000016346 #27	Zc3h4 (ENSMOCG00000006492)	Tmem160 (ENSMOCG00000016966) #29	Npas1 (ENSMOCG00000014578) #30	Arhgap35 (ENSMOCG00000015867) #31	Ceacam9 (ENSMOCG00000018285)	Ap2s1 (ENSMOCG00000019574) #32	Slc1a5 (ENSMOCG00000009762) #33	Fkrp (ENSMOCG00000022172)	Strn4 (ENSMOCG00000000602) #34	Prkd2 (ENSMOCG00000004684) #35
Cricetinae	ANCESTRAL SPECIES	49								ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F.a	ENSGT00970000193421.A #32	ENSGT00940000159485 #33
Chinese hamster chok1gshd	MODERN SPECIES	341								ENSCGRG00001019284 #14	Nop53 (ENSCGRG00001019033) #16	Ehd2 (ENSCGRG00001018635) #17	Bicra (ENSCGRG00001017944)	Zfp541 (ENSCGRG00001016947) #18	Napa (ENSCGRG00001004279) #19	Kptn (ENSCGRG00001017146) #20	Slc8a2 (ENSCGRG00001013525) #21	Meis3 (ENSCGRG00001010748) #22	ENSCGRG00001017077	Dhx34 (ENSCGRG00001014694)	C5ar2 (ENSCGRG00001013288) #23	C5ar1 (ENSCGRG00001012882) #24	Inafm1 (ENSCGRG00001010104)	Ccdc9 (ENSCGRG00001007536) #25	Bbc3 (ENSCGRG00001017224) #26	Sae1 (ENSCGRG00001016314) #27	Zc3h4 (ENSCGRG00001016116)	Tmem160 (ENSCGRG00001014723) #29	Npas1 (ENSCGRG00001013611) #30	Arhgap35 (ENSCGRG00001013301) #31	Ceacam15 (ENSCGRG00001017353)	Ceacam9 (ENSCGRG00001017245)	Ap2s1 (ENSCGRG00001015937) #32
Golden Hamster	MODERN SPECIES	836								Selenow (ENSMAUG00000014624) #14	Nop53 (ENSMAUG00000012617) #16	Ehd2 (ENSMAUG00000010317) #17	Bicra (ENSMAUG00000015992)	Zfp541 (ENSMAUG00000012586) #18	Napa (ENSMAUG00000008333) #19	ENSMAUG00000000883 #20	Slc8a2 (ENSMAUG00000010121) #21	Meis3 (ENSMAUG00000014202) #22	Dhx34 (ENSMAUG00000013394)	C5ar2 (ENSMAUG00000006533) #23	C5ar1 (ENSMAUG00000003322) #24	ENSMAUG00000003963 #25	Bbc3 (ENSMAUG00000009202) #26	Sae1 (ENSMAUG00000007765) #27	ENSMAUG00000000957	Zc3h4 (ENSMAUG00000000068)	Tmem160 (ENSMAUG00000000893) #29	Npas1 (ENSMAUG00000001894) #30	Arhgap35 (ENSMAUG00000000172) #31	ENSMAUG00000009227	ENSMAUG00000008055	Ap2s1 (ENSMAUG00000019505) #32	Slc1a5 (ENSMAUG00000017083) #33
Upper Galilee mountains blind mole rat	MODERN SPECIES	501								Selenow (ENSNGAG00000001219) #14	Nop53 (ENSNGAG00000019894) #16	Ehd2 (ENSNGAG00000018699) #17	Bicra (ENSNGAG00000012259)	Zfp541 (ENSNGAG00000022695) #18	Napa (ENSNGAG00000000817) #19	ENSNGAG00000023937 #20	Slc8a2 (ENSNGAG00000011676) #21	Meis3 (ENSNGAG00000018810) #22	Dhx34 (ENSNGAG00000012974)	C5ar2 (ENSNGAG00000010859) #23	C5ar1 (ENSNGAG00000009652) #24	ENSNGAG00000007282	Bbc3 (ENSNGAG00000004788) #26	ENSNGAG00000001209 #27	Zc3h4 (ENSNGAG00000020090)	Tmem160 (ENSNGAG00000019488) #29	Npas1 (ENSNGAG00000018097) #30	Arhgap35 (ENSNGAG00000016819) #31	Hif3a (ENSNGAG00000014207)	Ppp5c (ENSNGAG00000012794)	Pnma8a (ENSNGAG00000008259)	Pnma8b (ENSNGAG00000008913)	ENSNGAG00000004089
Lesser Egyptian jerboa	MODERN SPECIES	257					ENSJJAG00000011866 #11	Plekhf2 (ENSJJAG00000011954)	Crx (ENSJJAG00000014071) #13	Selenow (ENSJJAG00000007708) #14	Nop53 (ENSJJAG00000007854) #16	Ehd2 (ENSJJAG00000008621) #17	Bicra (ENSJJAG00000008900)	Zfp541 (ENSJJAG00000010932) #18	Napa (ENSJJAG00000011931) #19	ENSJJAG00000012597 #20	Slc8a2 (ENSJJAG00000013489) #21	Meis3 (ENSJJAG00000013989) #22	ENSJJAG00000013190
Kangaroo rat	MODERN SPECIES	475								Crx (ENSDORG00000027827) #13	ENSDORG00000016339 #16	Ehd2 (ENSDORG00000011700) #17	Bicra (ENSDORG00000025123)	Zfp541 (ENSDORG00000028161) #18	Napa (ENSDORG00000009995) #19	ENSDORG00000009993 #20	Slc8a2 (ENSDORG00000009991) #21	Meis3 (ENSDORG00000008441) #22	Dhx34 (ENSDORG00000008437)	C5ar1 (ENSDORG00000030050) #24	ENSDORG00000024050	ENSDORG00000029325	Sae1 (ENSDORG00000012199) #27	Zc3h4 (ENSDORG00000002726)	Tmem160 (ENSDORG00000002725) #29	Npas1 (ENSDORG00000002722) #30	Arhgap35 (ENSDORG00000001800) #31	Ap2s1 (ENSDORG00000015282) #32	Slc1a5 (ENSDORG00000008810) #33	Strn4 (ENSDORG00000005407) #34	Prkd2 (ENSDORG00000005405) #35	ENSDORG00000005404 #36	Gng8 (ENSDORG00000005403) #37
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000154432.n #11	ENSGT00940000163805	ENSGT00940000154432.m.a #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Sciuridae	ANCESTRAL SPECIES	5			ENSGT00940000163805	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000154432.n #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a.j #34
Marmotini	ANCESTRAL SPECIES	7	ENSGT00940000154432.n.h.a.b.a.b.a #11	ENSGT00940000163003	ENSGT00940000154432.n.h.a.b.b #11	ENSGT00940000154432.n.h.a.a #11	ENSGT00940000163805	ENSGT00940000154432.n.g #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a.j #34
Marmotini_b	ANCESTRAL SPECIES	22	ENSGT00940000154432.n.h.a.b.a.b.a #11	ENSGT00940000154432.n.h.a.b.a.a #11	ENSGT00940000163003	ENSGT00940000154432.n.h.a.b.b #11	ENSGT00940000154432.n.h.a.a #11	ENSGT00940000163805	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a.j #34
Squirrel	MODERN SPECIES	264	ENSSTOG00000020452 #11	ENSSTOG00000023396 #11	ENSSTOG00000020676 #11	BSPH1 (ENSSTOG00000034649)	ENSSTOG00000025647 #11	ENSSTOG00000022010 #11	ENSSTOG00000021552	CRX (ENSSTOG00000024356) #13	NOP53 (ENSSTOG00000022092) #16	ENSSTOG00000011087 #17	BICRA (ENSSTOG00000028398)	ZNF541 (ENSSTOG00000026879) #18	NAPA (ENSSTOG00000006983) #19	KPTN (ENSSTOG00000006963) #20	SLC8A2 (ENSSTOG00000020165) #21	MEIS3 (ENSSTOG00000028182) #22	DHX34 (ENSSTOG00000015831)	C5AR2 (ENSSTOG00000023346) #23	C5AR1 (ENSSTOG00000026678) #24	ENSSTOG00000005813 #25	SAE1 (ENSSTOG00000016251) #27	ZC3H4 (ENSSTOG00000016249)	TMEM160 (ENSSTOG00000024623) #29	NPAS1 (ENSSTOG00000003396) #30	ARHGAP35 (ENSSTOG00000011409) #31	SLC1A5 (ENSSTOG00000028576) #33	FKRP (ENSSTOG00000027896)	STRN4 (ENSSTOG00000025660) #34	PRKD2 (ENSSTOG00000026693) #35	ENSSTOG00000028905 #36	GNG8 (ENSSTOG00000024152) #37
Arctic ground squirrel	MODERN SPECIES	455							CRX (ENSUPAG00010010106) #13	ENSUPAG00010010102 #14	NOP53 (ENSUPAG00010010094) #16	EHD2 (ENSUPAG00010010085) #17	BICRA (ENSUPAG00010010059)	ZNF541 (ENSUPAG00010010048) #18	NAPA (ENSUPAG00010010015) #19	KPTN (ENSUPAG00010010006) #20	SLC8A2 (ENSUPAG00010009969) #21	MEIS3 (ENSUPAG00010009940) #22	DHX34 (ENSUPAG00010009871)	C5AR2 (ENSUPAG00010009867) #23	C5AR1 (ENSUPAG00010009863) #24	INAFM1 (ENSUPAG00010009857)	CCDC9 (ENSUPAG00010009846) #25	BBC3 (ENSUPAG00010009844) #26	SAE1 (ENSUPAG00010009824) #27	ZC3H4 (ENSUPAG00010009793)	TMEM160 (ENSUPAG00010009790) #29	NPAS1 (ENSUPAG00010009764) #30	ARHGAP35 (ENSUPAG00010009739) #31	AP2S1 (ENSUPAG00010009722) #32	SLC1A5 (ENSUPAG00010009701) #33	STRN4 (ENSUPAG00010009670) #34	PRKD2 (ENSUPAG00010009657) #35
Alpin marmot	MODERN SPECIES	45	ENSMMMG00000012846 #11	ENSMMMG00000012847 #11	ENSMMMG00000012878 #11	ENSMMMG00000013050 #11	ENSMMMG00000013103	ENSMMMG00000013119 #11	CRX (ENSMMMG00000013129) #13	SELENOW (ENSMMMG00000013140) #14	ENSMMMG00000013145 #16	EHD2 (ENSMMMG00000013147) #17	BICRA (ENSMMMG00000013156)	ZNF541 (ENSMMMG00000013251) #18	NAPA (ENSMMMG00000013273) #19	KPTN (ENSMMMG00000013277) #20	SLC8A2 (ENSMMMG00000013339) #21	MEIS3 (ENSMMMG00000013369) #22	DHX34 (ENSMMMG00000013402)	C5AR2 (ENSMMMG00000013488) #23	C5AR1 (ENSMMMG00000013493) #24	CCDC9 (ENSMMMG00000013499) #25	SAE1 (ENSMMMG00000013566) #27	ZC3H4 (ENSMMMG00000013587)	ENSMMMG00000013602	NPAS1 (ENSMMMG00000013606) #30	ARHGAP35 (ENSMMMG00000013646) #31	AP2S1 (ENSMMMG00000013659) #32	SLC1A5 (ENSMMMG00000013678) #33	FKRP (ENSMMMG00000013696)	STRN4 (ENSMMMG00000013698) #34	PRKD2 (ENSMMMG00000013741) #35	ENSMMMG00000013782 #36
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005015636 #11	ENSSVLG00005015448 #11	ENSSVLG00005014930 #11	ENSSVLG00005014859	ENSSVLG00005014702 #11	ENSSVLG00005014636	CRX (ENSSVLG00005014575) #13	SELENOW (ENSSVLG00005014510) #14	NOP53 (ENSSVLG00005014437) #16	EHD2 (ENSSVLG00005014364) #17	BICRA (ENSSVLG00005013976)	ZNF541 (ENSSVLG00005013491) #18	NAPA (ENSSVLG00005012991) #19	KPTN (ENSSVLG00005012899) #20	SLC8A2 (ENSSVLG00005012674) #21	MEIS3 (ENSSVLG00005012542) #22	DHX34 (ENSSVLG00005012498)	C5AR2 (ENSSVLG00005012478) #23	C5AR1 (ENSSVLG00005012437) #24	ENSSVLG00005012324	CCDC9 (ENSSVLG00005012213) #25	BBC3 (ENSSVLG00005012098) #26	SAE1 (ENSSVLG00005011951) #27	ZC3H4 (ENSSVLG00005011727)	TMEM160 (ENSSVLG00005011672) #29	NPAS1 (ENSSVLG00005011606) #30	ARHGAP35 (ENSSVLG00005011555) #31	AP2S1 (ENSSVLG00005011272) #32	ENSSVLG00005011219	SLC1A5 (ENSSVLG00005010966) #33	FKRP (ENSSVLG00005010926)
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT01030000234606.a.b.d #9	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163805	ENSGT00940000154432.m.a.b #11	ENSGT00940000154432.m.a.a #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Hystricomorpha_a	ANCESTRAL SPECIES	39							ENSGT00940000154432.m.a.a #11	ENSGT00940000161634 #13	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00940000167173	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Guinea pig	MODERN SPECIES	80					Std1 (ENSCPOG00000003036) #11	Std2 (ENSCPOG00000034234) #11	ENSCPOG00000034667 #11	CRX (ENSCPOG00000036687) #13	NOP53 (ENSCPOG00000015665) #16	EHD2 (ENSCPOG00000026417) #17	BICRA (ENSCPOG00000015610)	ZNF541 (ENSCPOG00000020622) #18	NAPA (ENSCPOG00000010617) #19	KPTN (ENSCPOG00000010615) #20	SLC8A2 (ENSCPOG00000010035) #21	MEIS3 (ENSCPOG00000026589) #22	DHX34 (ENSCPOG00000006510)	C5AR2 (ENSCPOG00000010536) #23	C5AR1 (ENSCPOG00000030913) #24	INAFM1 (ENSCPOG00000034661)	ENSCPOG00000008209	SAE1 (ENSCPOG00000021581) #27	ZC3H4 (ENSCPOG00000036659)	TMEM160 (ENSCPOG00000015280) #29	NPAS1 (ENSCPOG00000023069) #30	ARHGAP35 (ENSCPOG00000013236) #31	AP2S1 (ENSCPOG00000026801) #32	SLC1A5 (ENSCPOG00000004326) #33	FKRP (ENSCPOG00000036590)	STRN4 (ENSCPOG00000001053) #34	PRKD2 (ENSCPOG00000003294) #35
Hystricomorpha_b	ANCESTRAL SPECIES	49								ENSGT00940000161634 #13	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.g #24	ENSGT00940000167173	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35	ENSGT00950000183181.B.b #36
Long-tailed chinchilla	MODERN SPECIES	281								CRX (ENSCLAG00000001963) #13	NOP53 (ENSCLAG00000001860) #16	EHD2 (ENSCLAG00000001756) #17	BICRA (ENSCLAG00000000673)	ZNF541 (ENSCLAG00000001489) #18	NAPA (ENSCLAG00000001379) #19	KPTN (ENSCLAG00000001346) #20	SLC8A2 (ENSCLAG00000000972) #21	MEIS3 (ENSCLAG00000000719) #22	DHX34 (ENSCLAG00000000906)	C5AR1 (ENSCLAG00000001064) #24	ENSCLAG00000000680	BBC3 (ENSCLAG00000000578) #26	SAE1 (ENSCLAG00000000507) #27	ENSCLAG00000000483	ZC3H4 (ENSCLAG00000001032)	TMEM160 (ENSCLAG00000000918) #29	NPAS1 (ENSCLAG00000000717) #30	ARHGAP35 (ENSCLAG00000002385) #31	AP2S1 (ENSCLAG00000002250) #32	ENSCLAG00000002077 #33	FKRP (ENSCLAG00000001845)	STRN4 (ENSCLAG00000001542) #34	PRKD2 (ENSCLAG00000001395) #35
Degu	MODERN SPECIES	238								CRX (ENSODEG00000006452) #13	NOP53 (ENSODEG00000006707) #16	EHD2 (ENSODEG00000006641) #17	BICRA (ENSODEG00000009243)	ZNF541 (ENSODEG00000005850) #18	NAPA (ENSODEG00000008511) #19	ENSODEG00000009127 #20	SLC8A2 (ENSODEG00000007313) #21	MEIS3 (ENSODEG00000006485) #22	DHX34 (ENSODEG00000006333)	ENSODEG00000008542	ENSODEG00000009476	BBC3 (ENSODEG00000006470) #26	ENSODEG00000006581 #27	ZC3H4 (ENSODEG00000008320)	TMEM160 (ENSODEG00000009538) #29	NPAS1 (ENSODEG00000006878) #30	ARHGAP35 (ENSODEG00000007178) #31	AP2S1 (ENSODEG00000006649) #32	SLC1A5 (ENSODEG00000007341) #33	FKRP (ENSODEG00000019605)	STRN4 (ENSODEG00000009103) #34	PRKD2 (ENSODEG00000006559) #35	ENSODEG00000006767 #36
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000015393	ELSPBP1 (ENSHGLG00000015441) #10	ENSHGLG00000015622	ENSHGLG00000018150 #11	SULT2A1 (ENSHGLG00000013462) #11	ENSHGLG00000034800	ENSHGLG00000048960 #11	CRX (ENSHGLG00000013944) #13	ENSHGLG00000037909 #14	NOP53 (ENSHGLG00000018240) #16	EHD2 (ENSHGLG00000017825) #17	ZNF541 (ENSHGLG00000017589) #18	NAPA (ENSHGLG00000017294) #19	KPTN (ENSHGLG00000013757) #20	SLC8A2 (ENSHGLG00000017722) #21	MEIS3 (ENSHGLG00000018600) #22	DHX34 (ENSHGLG00000004917)	C5AR2 (ENSHGLG00000045362) #23	C5AR1 (ENSHGLG00000005545) #24	CCDC9 (ENSHGLG00000006240) #25	BBC3 (ENSHGLG00000050947) #26	SAE1 (ENSHGLG00000007950) #27	ZC3H4 (ENSHGLG00000008600)	TMEM160 (ENSHGLG00000009284) #29	NPAS1 (ENSHGLG00000009357) #30	ARHGAP35 (ENSHGLG00000010970) #31	AP2S1 (ENSHGLG00000018471) #32	SLC1A5 (ENSHGLG00000013744) #33	FKRP (ENSHGLG00000017783)	STRN4 (ENSHGLG00000015771) #34	PRKD2 (ENSHGLG00000017425) #35
Laurasiatheria	ANCESTRAL SPECIES	5	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000166546	ENSGT00960000191916	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00990000206928	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00710000107236	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33
Laurasiatheria_a	ANCESTRAL SPECIES	5	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00990000206928	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583
Laurasiatheria_b	ANCESTRAL SPECIES	5	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00990000206928	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583
Carnivora	ANCESTRAL SPECIES	2	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00990000206928	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583
Caniformia	ANCESTRAL SPECIES	1	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00990000206928	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583
Caniformia_b	ANCESTRAL SPECIES	2	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00990000206928	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Ursidae	ANCESTRAL SPECIES	30	ENSGT00940000167541	ENSGT00940000157783 #8	ENSGT00940000160506.d	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000161634.h #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a.x #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00990000206928	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007.d #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Ursus	ANCESTRAL SPECIES	13	ENSGT00830000128447	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506.d	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000161634.h #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00390000005826.a.a.x #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00990000206928	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00550000075007.d #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00950000183095.a.b.a.b.a.h.a #34	ENSGT00950000183024.a.b.b #35	ENSGT00950000183181.B.b #36
American black bear	MODERN SPECIES	1824												NAPA (ENSUAMG00000020183) #19	ENSUAMG00000020184 #20	KPTN (ENSUAMG00000020185) #20	SLC8A2 (ENSUAMG00000020186) #21	MEIS3 (ENSUAMG00000020187) #22	ENSUAMG00000020188	DHX34 (ENSUAMG00000020189)
Polar bear	MODERN SPECIES	115	CARD8 (ENSUMAG00000023856)	ENSUMAG00000023850	LIG1 (ENSUMAG00000023845) #8	CABP5 (ENSUMAG00000023843)	ELSPBP1 (ENSUMAG00000023840) #10	BSPH1 (ENSUMAG00000023839)	ENSUMAG00000023838	CRX (ENSUMAG00000023837) #13	SELENOW (ENSUMAG00000023836) #14	ENSUMAG00000023832 #16	ENSUMAG00000023830 #17	ENSUMAG00000023829 #17	NAPA (ENSUMAG00000023811) #19	KPTN (ENSUMAG00000023806) #20	ENSUMAG00000023803 #21	MEIS3 (ENSUMAG00000023795) #22	C5AR1 (ENSUMAG00000023780) #24	CCDC9 (ENSUMAG00000023773) #25	SAE1 (ENSUMAG00000023769) #27	ENSUMAG00000023768	ENSUMAG00000023763 #30	ARHGAP35 (ENSUMAG00000023756) #31	ENSUMAG00000023753 #32	ENSUMAG00000023748 #33	STRN4 (ENSUMAG00000023724) #34	PRKD2 (ENSUMAG00000023719) #35	GNG8 (ENSUMAG00000023717) #37	ENSUMAG00000023716	ENSUMAG00000023715	CCDC8 (ENSUMAG00000023713)	PNMA8C (ENSUMAG00000023712)
Giant Panda	MODERN SPECIES	3	CARD8 (ENSAMEG00000015082)	ZSWIM9 (ENSAMEG00000015090)	ENSAMEG00000015091	CABP5 (ENSAMEG00000015170)	ELSPBP1 (ENSAMEG00000015177) #10	BSPH1 (ENSAMEG00000024094)	CRX (ENSAMEG00000015191) #13	SELENOW (ENSAMEG00000028907) #14	NOP53 (ENSAMEG00000015214) #16	EHD2 (ENSAMEG00000015263) #17	BICRA (ENSAMEG00000008090)	ZNF541 (ENSAMEG00000029569) #18	NAPA (ENSAMEG00000008104) #19	KPTN (ENSAMEG00000008142) #20	SLC8A2 (ENSAMEG00000008172) #21	MEIS3 (ENSAMEG00000008199) #22	DHX34 (ENSAMEG00000008270)	C5AR2 (ENSAMEG00000019477) #23	CCDC9 (ENSAMEG00000008286) #25	BBC3 (ENSAMEG00000008310) #26	SAE1 (ENSAMEG00000008313) #27	ZC3H4 (ENSAMEG00000008349)	TMEM160 (ENSAMEG00000028478) #29	ARHGAP35 (ENSAMEG00000008374) #31	ENSAMEG00000008394 #32	SLC1A5 (ENSAMEG00000008407) #33	STRN4 (ENSAMEG00000008435) #34	PRKD2 (ENSAMEG00000008498) #35	ENSAMEG00000026303 #36	GNG8 (ENSAMEG00000008557) #37	ENSAMEG00000008560
Mustelinae	ANCESTRAL SPECIES	7	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Ferret	DUPLICATION
Ferret	MODERN SPECIES	291	ENSMPUG00000004302	ZSWIM9 (ENSMPUG00000004307)	LIG1 (ENSMPUG00000004309) #8	CABP5 (ENSMPUG00000004329)	ELSPBP1 (ENSMPUG00000004369) #10	ENSMPUG00000004404	CRX (ENSMPUG00000004411) #13	SELENOW (ENSMPUG00000004433) #14	NOP53 (ENSMPUG00000004456) #16	EHD2 (ENSMPUG00000004466) #17	BICRA (ENSMPUG00000004473)	ZNF541 (ENSMPUG00000004486) #18	NAPA (ENSMPUG00000004511) #19	KPTN (ENSMPUG00000004660) #20	SLC8A2 (ENSMPUG00000004745) #21	ENSMPUG00000004760 #22	DHX34 (ENSMPUG00000004925)	C5AR2 (ENSMPUG00000019367) #23	C5AR1 (ENSMPUG00000019368) #24	CCDC9 (ENSMPUG00000004941) #25	BBC3 (ENSMPUG00000004953) #26	SAE1 (ENSMPUG00000004965) #27	ZC3H4 (ENSMPUG00000005065)	TMEM160 (ENSMPUG00000005131) #29	NPAS1 (ENSMPUG00000005118) #30	ARHGAP35 (ENSMPUG00000005138) #31	AP2S1 (ENSMPUG00000005143) #32	SLC1A5 (ENSMPUG00000005149) #33	FKRP (ENSMPUG00000019369)	STRN4 (ENSMPUG00000005157) #34	PRKD2 (ENSMPUG00000005234) #35
Ferret	MODERN SPECIES	276									PHYHIPL (ENSMPUG00000011002)	FAM13C (ENSMPUG00000011007)	SLC16A9 (ENSMPUG00000011013)	ENSMPUG00000011021	CCDC6 (ENSMPUG00000011027)	ANK3 (ENSMPUG00000011035)	ENSMPUG00000019949	ENSMPUG00000019950 #22	CDK1 (ENSMPUG00000011057)	RHOBTB1 (ENSMPUG00000011060)	ENSMPUG00000019951	TMEM26 (ENSMPUG00000011065)	CABCOCO1 (ENSMPUG00000011071)	ARID5B (ENSMPUG00000011076)	ENSMPUG00000011082	RTKN2 (ENSMPUG00000011086)	ZNF365 (ENSMPUG00000011094)	ENSMPUG00000011097	ADO (ENSMPUG00000019952)	EGR2 (ENSMPUG00000011103)	NRBF2 (ENSMPUG00000011106)	JMJD1C (ENSMPUG00000011122)	ENSMPUG00000019953
American mink	MODERN SPECIES	135	LIG1 (ENSNVIG00000011315) #8	CABP5 (ENSNVIG00000011286)	ELSPBP1 (ENSNVIG00000011256) #10	ENSNVIG00000011237	ENSNVIG00000011212	CRX (ENSNVIG00000011203) #13	ENSNVIG00000011194	SELENOW (ENSNVIG00000011156) #14	NOP53 (ENSNVIG00000011121) #16	EHD2 (ENSNVIG00000011110) #17	BICRA (ENSNVIG00000011095)	ZNF541 (ENSNVIG00000011069) #18	NAPA (ENSNVIG00000011031) #19	KPTN (ENSNVIG00000011012) #20	SLC8A2 (ENSNVIG00000011004) #21	MEIS3 (ENSNVIG00000010981) #22	DHX34 (ENSNVIG00000010958)	C5AR2 (ENSNVIG00000010949) #23	C5AR1 (ENSNVIG00000010940) #24	CCDC9 (ENSNVIG00000010901) #25	ENSNVIG00000010884 #26	SAE1 (ENSNVIG00000010826) #27	ZC3H4 (ENSNVIG00000010804)	TMEM160 (ENSNVIG00000010793) #29	NPAS1 (ENSNVIG00000010755) #30	ARHGAP35 (ENSNVIG00000010727) #31	AP2S1 (ENSNVIG00000010605) #32	SLC1A5 (ENSNVIG00000010588) #33	FKRP (ENSNVIG00000010581)	STRN4 (ENSNVIG00000010539) #34	PRKD2 (ENSNVIG00000009771) #35
Canidae	ANCESTRAL SPECIES	5	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000161634 #13	ENSGT00940000166546	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00390000018706.n	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Dingo	MODERN SPECIES	125	ZSWIM9 (ENSCAFG00020026450)	LIG1 (ENSCAFG00020026453) #8	CABP5 (ENSCAFG00020026519)	ENSCAFG00020026523 #10	ENSCAFG00020026524 #10	BSPH1 (ENSCAFG00020026526)	ENSCAFG00020026528	ENSCAFG00020026529	CRX (ENSCAFG00020026531) #13	EHD2 (ENSCAFG00020000226) #17	BICRA (ENSCAFG00020000660)	ZNF541 (ENSCAFG00020000764) #18	NAPA (ENSCAFG00020000831) #19	KPTN (ENSCAFG00020000973) #20	SLC8A2 (ENSCAFG00020001118) #21	MEIS3 (ENSCAFG00020001147) #22	DHX34 (ENSCAFG00020001163)	C5AR2 (ENSCAFG00020001172) #23	C5AR1 (ENSCAFG00020001178) #24	INAFM1 (ENSCAFG00020001184)	CCDC9 (ENSCAFG00020001196) #25	ENSCAFG00020001204	SAE1 (ENSCAFG00020001254) #27	ZC3H4 (ENSCAFG00020001450)	ENSCAFG00020001527 #30	ENSCAFG00020001534 #30	ARHGAP35 (ENSCAFG00020001540) #31	ENSCAFG00020001550 #32	SLC1A5 (ENSCAFG00020001559) #33	FKRP (ENSCAFG00020001564)	STRN4 (ENSCAFG00020001572) #34
Dog	MODERN SPECIES		ZSWIM9 (ENSCAFG00845001889)	LIG1 (ENSCAFG00845002011) #8	CABP5 (ENSCAFG00845002104)	ELSPBP1 (ENSCAFG00845002136) #10	ENSCAFG00845002180	ENSCAFG00845002194	CRX (ENSCAFG00845002208) #13	ENSCAFG00845002224 #14	NOP53 (ENSCAFG00845002253) #16	EHD2 (ENSCAFG00845002294) #17	BICRA (ENSCAFG00845002344)	ZNF541 (ENSCAFG00845002412) #18	NAPA (ENSCAFG00845002467) #19	KPTN (ENSCAFG00845002500) #20	SLC8A2 (ENSCAFG00845002555) #21	MEIS3 (ENSCAFG00845002685) #22	DHX34 (ENSCAFG00845002720)	C5AR2 (ENSCAFG00845002732) #23	C5AR1 (ENSCAFG00845002761) #24	INAFM1 (ENSCAFG00845002784)	CCDC9 (ENSCAFG00845002800) #25	BBC3 (ENSCAFG00845002815) #26	SAE1 (ENSCAFG00845002951) #27	ZC3H4 (ENSCAFG00845002992)	TMEM160 (ENSCAFG00845003007) #29	ARHGAP35 (ENSCAFG00845003034) #30	ARHGAP35 (ENSCAFG00845003086) #31	AP2S1 (ENSCAFG00845003157) #32	SLC1A5 (ENSCAFG00845003284) #33	FKRP (ENSCAFG00845003332)	STRN4 (ENSCAFG00845003353) #34
Red fox	MODERN SPECIES	101	CARD8 (ENSVVUG00000023304)	ENSVVUG00000023311	LIG1 (ENSVVUG00000023318) #8	CABP5 (ENSVVUG00000023332)	ELSPBP1 (ENSVVUG00000023338) #10	BSPH1 (ENSVVUG00000023344)	ENSVVUG00000023349	CRX (ENSVVUG00000023352) #13	ENSVVUG00000023357	NOP53 (ENSVVUG00000023365) #16	EHD2 (ENSVVUG00000023369) #17	ZNF541 (ENSVVUG00000023392) #18	NAPA (ENSVVUG00000023413) #19	KPTN (ENSVVUG00000023485) #20	SLC8A2 (ENSVVUG00000023490) #21	MEIS3 (ENSVVUG00000023497) #22	DHX34 (ENSVVUG00000023515)	C5AR2 (ENSVVUG00000023517) #23	C5AR1 (ENSVVUG00000023518) #24	CCDC9 (ENSVVUG00000023520) #25	ENSVVUG00000023521	ENSVVUG00000000139	SAE1 (ENSVVUG00000000163) #27	ZC3H4 (ENSVVUG00000000208)	TMEM160 (ENSVVUG00000000280) #29	NPAS1 (ENSVVUG00000000317) #30	ARHGAP35 (ENSVVUG00000000350) #31	AP2S1 (ENSVVUG00000000416) #32	FKRP (ENSVVUG00000000452)	SLC1A5 (ENSVVUG00000000475) #33	STRN4 (ENSVVUG00000000583) #34
Felidae	ANCESTRAL SPECIES	7	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000161634 #13	ENSGT00940000161069.g #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Panthera	ANCESTRAL SPECIES	20	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000161634 #13	ENSGT00940000161069.g #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Tiger	MODERN SPECIES	36	ENSPTIG00000014657	CARD8 (ENSPTIG00000013121)	ENSPTIG00000012590	LIG1 (ENSPTIG00000006127) #8	CABP5 (ENSPTIG00000004572)	ENSPTIG00000002518 #10	BSPH1 (ENSPTIG00000021843)	ENSPTIG00000021675	ENSPTIG00000021571	ENSPTIG00000018779 #14	EHD2 (ENSPTIG00000018608) #17	ZNF541 (ENSPTIG00000014919) #18	NAPA (ENSPTIG00000012945) #19	ENSPTIG00000012410 #20	ENSPTIG00000011113 #21	MEIS3 (ENSPTIG00000019415) #22	DHX34 (ENSPTIG00000018435)	C5AR1 (ENSPTIG00000000446) #24	ENSPTIG00000016579	SAE1 (ENSPTIG00000016036) #27	ZC3H4 (ENSPTIG00000014229)	ENSPTIG00000013620 #30	ARHGAP35 (ENSPTIG00000013260) #31	ENSPTIG00000012880 #32	SLC1A5 (ENSPTIG00000011531) #33	STRN4 (ENSPTIG00000005381) #34	PRKD2 (ENSPTIG00000018488) #35	ENSPTIG00000017935 #36	GNG8 (ENSPTIG00000017646) #37	ENSPTIG00000017515	ENSPTIG00000015079
Panthera_a	ANCESTRAL SPECIES	22	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000161634 #13	ENSGT00940000161069.g #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
leopard	MODERN SPECIES	103	CARD8 (ENSPPRG00000023659)	ZSWIM9 (ENSPPRG00000024003)	LIG1 (ENSPPRG00000018056) #8	CABP5 (ENSPPRG00000010847)	ENSPPRG00000010583 #10	BSPH1 (ENSPPRG00000010439)	ENSPPRG00000009639	CRX (ENSPPRG00000009458) #13	ENSPPRG00000009309 #14	NOP53 (ENSPPRG00000008954) #16	EHD2 (ENSPPRG00000008148) #17	ZNF541 (ENSPPRG00000006351) #18	NAPA (ENSPPRG00000005495) #19	KPTN (ENSPPRG00000004578) #20	SLC8A2 (ENSPPRG00000003527) #21	MEIS3 (ENSPPRG00000003182) #22	DHX34 (ENSPPRG00000002535)	C5AR2 (ENSPPRG00000015739) #23	C5AR1 (ENSPPRG00000015726) #24	INAFM1 (ENSPPRG00000015681)	CCDC9 (ENSPPRG00000001198) #25	BBC3 (ENSPPRG00000000897) #26	SAE1 (ENSPPRG00000000641) #27	ZC3H4 (ENSPPRG00000023272)	TMEM160 (ENSPPRG00000023643) #29	NPAS1 (ENSPPRG00000023743) #30	ARHGAP35 (ENSPPRG00000024753) #31	AP2S1 (ENSPPRG00000022307) #32	ENSPPRG00000019101 #32	SLC1A5 (ENSPPRG00000017631) #33	FKRP (ENSPPRG00000015401)
lion	MODERN SPECIES	15	ZSWIM9 (ENSPLOG00000007613)	LIG1 (ENSPLOG00000007402) #8	CABP5 (ENSPLOG00000007311)	ELSPBP1 (ENSPLOG00000007259) #10	BSPH1 (ENSPLOG00000007225)	ENSPLOG00000007210	CRX (ENSPLOG00000007195) #13	SELENOW (ENSPLOG00000007177) #14	NOP53 (ENSPLOG00000007129) #16	ENSPLOG00000007108 #17	BICRA (ENSPLOG00000007084)	ZNF541 (ENSPLOG00000007040) #18	NAPA (ENSPLOG00000006967) #19	KPTN (ENSPLOG00000006920) #20	SLC8A2 (ENSPLOG00000006887) #21	MEIS3 (ENSPLOG00000006810) #22	DHX34 (ENSPLOG00000006682)	C5AR2 (ENSPLOG00000006656) #23	C5AR1 (ENSPLOG00000006646) #24	INAFM1 (ENSPLOG00000006630)	CCDC9 (ENSPLOG00000006569) #25	BBC3 (ENSPLOG00000006527) #26	SAE1 (ENSPLOG00000006483) #27	ZC3H4 (ENSPLOG00000006441)	ENSPLOG00000006416 #29	NPAS1 (ENSPLOG00000006360) #30	ARHGAP35 (ENSPLOG00000006320) #31	AP2S1 (ENSPLOG00000006172) #32	ENSPLOG00000006107 #33	FKRP (ENSPLOG00000006088)	STRN4 (ENSPLOG00000006025) #34
Cat	MODERN SPECIES	246	CARD8 (ENSFCAG00000023335)	ZSWIM9 (ENSFCAG00000045504)	LIG1 (ENSFCAG00000007411) #8	CABP5 (ENSFCAG00000007410)	ELSPBP1 (ENSFCAG00000010611) #10	ENSFCAG00000039201	ENSFCAG00000045134 #13	SELENOW (ENSFCAG00000015176) #14	NOP53 (ENSFCAG00000010861) #16	EHD2 (ENSFCAG00000029117) #17	BICRA (ENSFCAG00000027050)	ZNF541 (ENSFCAG00000028959) #18	NAPA (ENSFCAG00000006151) #19	KPTN (ENSFCAG00000006149) #20	SLC8A2 (ENSFCAG00000029230) #21	MEIS3 (ENSFCAG00000006146) #22	DHX34 (ENSFCAG00000006144)	C5AR2 (ENSFCAG00000043336) #23	C5AR1 (ENSFCAG00000046725) #24	CCDC9 (ENSFCAG00000004837) #25	BBC3 (ENSFCAG00000040792) #26	SAE1 (ENSFCAG00000027112) #27	ZC3H4 (ENSFCAG00000004835)	ENSFCAG00000032417 #29	NPAS1 (ENSFCAG00000004833) #30	ARHGAP35 (ENSFCAG00000004831) #31	AP2S1 (ENSFCAG00000031554) #32	SLC1A5 (ENSFCAG00000005736) #33	FKRP (ENSFCAG00000024153)	STRN4 (ENSFCAG00000000782) #34	PRKD2 (ENSFCAG00000010311) #35
Laurasiatheria_c	ANCESTRAL SPECIES	4	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00710000107236	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Equus	ANCESTRAL SPECIES	1	ENSGT00940000154432.r #11	ENSGT00940000154432.q.a.b.a #11	ENSGT00940000154432.q.a.a.a.b #11	ENSGT00940000154432.q.a.b.b #11	ENSGT00940000154432.q.a.a.a.a #11	ENSGT00940000161634 #13	ENSGT00940000154432.q.a.a.b #11	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00710000107236	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Donkey	MODERN SPECIES	18	ENSEASG00005004396 #11	ENSEASG00005004386 #11	ENSEASG00005004378 #11	ENSEASG00005031534 #11	CRX (ENSEASG00005004365) #13	ENSEASG00005036968 #11	ENSEASG00005004352 #14	NOP53 (ENSEASG00005004345) #16	EHD2 (ENSEASG00005004339) #17	ZNF541 (ENSEASG00005004241) #18	NAPA (ENSEASG00005004201) #19	KPTN (ENSEASG00005004183) #20	ENSEASG00005004180 #21	ENSEASG00005004177 #21	ENSEASG00005028907	MEIS3 (ENSEASG00005004166) #22	DHX34 (ENSEASG00005004155)	C5AR2 (ENSEASG00005025956) #23	C5AR1 (ENSEASG00005026249) #24	INAFM1 (ENSEASG00005030427)	CCDC9 (ENSEASG00005004139) #25	ENSEASG00005035087	SAE1 (ENSEASG00005004124) #27	ZC3H4 (ENSEASG00005004107)	TMEM160 (ENSEASG00005023909) #29	ENSEASG00005038114 #30	ENSEASG00005004094 #30	ENSEASG00005032745 #30	ARHGAP35 (ENSEASG00005004087) #31	ENSEASG00005032304 #32	SLC1A5 (ENSEASG00005004062) #33
Horse	MODERN SPECIES	1	ENSECAG00000049982 #11	ENSECAG00000007898 #11	ENSECAG00000020744 #11	ENSECAG00000057574 #11	ENSECAG00000010649 #11	CRX (ENSECAG00000010376) #13	ENSECAG00000029321 #11	SELENOW (ENSECAG00000006989) #14	NOP53 (ENSECAG00000026850) #16	EHD2 (ENSECAG00000028265) #17	BICRA (ENSECAG00000030809)	ZNF541 (ENSECAG00000019417) #18	NAPA (ENSECAG00000006959) #19	KPTN (ENSECAG00000018392) #20	SLC8A2 (ENSECAG00000008392) #21	MEIS3 (ENSECAG00000016791) #22	DHX34 (ENSECAG00000011354)	C5AR2 (ENSECAG00000006218) #23	C5AR1 (ENSECAG00000006153) #24	CCDC9 (ENSECAG00000008559) #25	ENSECAG00000031168	SAE1 (ENSECAG00000002087) #27	ZC3H4 (ENSECAG00000024342)	NPAS1 (ENSECAG00000022513) #30	ARHGAP35 (ENSECAG00000017712) #31	AP2S1 (ENSECAG00000016403) #32	SLC1A5 (ENSECAG00000011637) #33	FKRP (ENSECAG00000010652)	STRN4 (ENSECAG00000002830) #34	PRKD2 (ENSECAG00000024775) #35	DACT3 (ENSECAG00000026972) #36
Chiroptera	ANCESTRAL SPECIES	16	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00710000107236	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011.c	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Megabat	MODERN SPECIES	654												ZNF541 (ENSPVAG00000004031) #18	NAPA (ENSPVAG00000004030) #19	KPTN (ENSPVAG00000004028) #20	SLC8A2 (ENSPVAG00000004025) #21	MEIS3 (ENSPVAG00000004023) #22	DHX34 (ENSPVAG00000004017)
Microchiroptera	ANCESTRAL SPECIES	18	ENSGT00390000011694	ENSGT00940000167541	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00710000107236	ENSGT00550000075007 #27	ENSGT00940000160011.c	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Greater horseshoe bat	MODERN SPECIES	6	ENSRFEG00010005515	ZSWIM9 (ENSRFEG00010005491)	ENSRFEG00010005427	CABP5 (ENSRFEG00010005387)	ENSRFEG00010005368	SULT2A1 (ENSRFEG00010005353) #11	CRX (ENSRFEG00010005332) #13	SELENOW (ENSRFEG00010005319) #14	NOP53 (ENSRFEG00010015079) #16	EHD2 (ENSRFEG00010015006) #17	BICRA (ENSRFEG00010014745)	ZNF541 (ENSRFEG00010014459) #18	NAPA (ENSRFEG00010014363) #19	KPTN (ENSRFEG00010014307) #20	SLC8A2 (ENSRFEG00010014268) #21	MEIS3 (ENSRFEG00010014079) #22	DHX34 (ENSRFEG00010014000)	C5AR2 (ENSRFEG00010013977) #23	ENSRFEG00010013958	C5AR1 (ENSRFEG00010013939) #24	ENSRFEG00010013918	CCDC9 (ENSRFEG00010013812) #25	ENSRFEG00010013509	SAE1 (ENSRFEG00010013378) #27	ZC3H4 (ENSRFEG00010013266)	TMEM160 (ENSRFEG00010013212) #29	NPAS1 (ENSRFEG00010013143) #30	ARHGAP35 (ENSRFEG00010013104) #31	AP2S1 (ENSRFEG00010012755) #32	SLC1A5 (ENSRFEG00010012525) #33	FKRP (ENSRFEG00010012506)
Artiodactyla	ANCESTRAL SPECIES	5	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Suina	ANCESTRAL SPECIES	2	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003.b	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Pig	MODERN SPECIES	14	LIG1 (ENSSSCG00000003128) #8	CABP5 (ENSSSCG00000003126)	ELSPBP1 (ENSSSCG00000003125) #10	BSPH1 (ENSSSCG00000003123)	ENSSSCG00000058863	SULT2A1 (ENSSSCG00000033207) #11	CRX (ENSSSCG00000003124) #13	SELENOW (ENSSSCG00000034313) #14	NOP53 (ENSSSCG00000022774) #16	EHD2 (ENSSSCG00000023371) #17	BICRA (ENSSSCG00000022302)	ZNF541 (ENSSSCG00000003119) #18	NAPA (ENSSSCG00000003120) #19	KPTN (ENSSSCG00000003121) #20	SLC8A2 (ENSSSCG00000029567) #21	MEIS3 (ENSSSCG00000003115) #22	DHX34 (ENSSSCG00000003114)	C5AR2 (ENSSSCG00000003113) #23	C5AR1 (ENSSSCG00000056729) #24	CCDC9 (ENSSSCG00000024240) #25	BBC3 (ENSSSCG00000003112) #26	SAE1 (ENSSSCG00000003111) #27	ZC3H4 (ENSSSCG00000003110)	TMEM160 (ENSSSCG00000003109) #29	NPAS1 (ENSSSCG00000003108) #30	ARHGAP35 (ENSSSCG00000003107) #31	AP2S1 (ENSSSCG00000003106) #32	SLC1A5 (ENSSSCG00000003105) #33	FKRP (ENSSSCG00000003103)	STRN4 (ENSSSCG00000003104) #34	PRKD2 (ENSSSCG00000026152) #35
Chacoan peccary	MODERN SPECIES	799	LIG1 (ENSCWAG00000013278) #8	CABP5 (ENSCWAG00000013178)	ELSPBP1 (ENSCWAG00000013009) #10	BSPH1 (ENSCWAG00000012970)	SULT2A1 (ENSCWAG00000012896) #11	CRX (ENSCWAG00000012855) #13	SELENOW (ENSCWAG00000012829) #14	NOP53 (ENSCWAG00000012770) #16	EHD2 (ENSCWAG00000012728) #17	BICRA (ENSCWAG00000012587)	ZNF541 (ENSCWAG00000012278) #18	NAPA (ENSCWAG00000012199) #19	KPTN (ENSCWAG00000012157) #20	SLC8A2 (ENSCWAG00000011951) #21	ENSCWAG00000011922	MEIS3 (ENSCWAG00000011591) #22	DHX34 (ENSCWAG00000011536)	C5AR2 (ENSCWAG00000011520) #23	C5AR1 (ENSCWAG00000011461) #24	INAFM1 (ENSCWAG00000011443)	CCDC9 (ENSCWAG00000011355) #25	BBC3 (ENSCWAG00000011285) #26	SAE1 (ENSCWAG00000011191) #27	ZC3H4 (ENSCWAG00000011062)	TMEM160 (ENSCWAG00000011029) #29	NPAS1 (ENSCWAG00000010905) #30	ARHGAP35 (ENSCWAG00000010834) #31	AP2S1 (ENSCWAG00000010683) #32	SLC1A5 (ENSCWAG00000010631) #33	FKRP (ENSCWAG00000010618)	STRN4 (ENSCWAG00000010545) #34
Artiodactyla_a	ANCESTRAL SPECIES	4	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Camelidae	ANCESTRAL SPECIES	15	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00710000107236	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35	ENSGT00950000183181.B.b #36
Arabian camel	MODERN SPECIES	35	LIG1 (ENSCDRG00005001482) #8	CABP5 (ENSCDRG00005001418)	ELSPBP1 (ENSCDRG00005001383) #10	BSPH1 (ENSCDRG00005001366)	ENSCDRG00005001351	SULT2A1 (ENSCDRG00005001335) #11	CRX (ENSCDRG00005001324) #13	SELENOW (ENSCDRG00005001304) #14	NOP53 (ENSCDRG00005001286) #16	EHD2 (ENSCDRG00005001269) #17	BICRA (ENSCDRG00005001209)	ZNF541 (ENSCDRG00005001169) #18	NAPA (ENSCDRG00005001100) #19	KPTN (ENSCDRG00005001072) #20	SLC8A2 (ENSCDRG00005001049) #21	MEIS3 (ENSCDRG00005001000) #22	DHX34 (ENSCDRG00005000955)	C5AR2 (ENSCDRG00005000932) #23	C5AR1 (ENSCDRG00005000922) #24	CCDC9 (ENSCDRG00005000886) #25	ENSCDRG00005000861	SAE1 (ENSCDRG00005000803) #27	ZC3H4 (ENSCDRG00005000747)	TMEM160 (ENSCDRG00005000726) #29	NPAS1 (ENSCDRG00005000700) #30	ENSCDRG00005000682	ARHGAP35 (ENSCDRG00005000613) #31	AP2S1 (ENSCDRG00005000547) #32	SLC1A5 (ENSCDRG00005000433) #33	STRN4 (ENSCDRG00005000314) #34	PRKD2 (ENSCDRG00005000229) #35
Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Cetacea	ANCESTRAL SPECIES	6	ENSGT00950000183364	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Blue whale	MODERN SPECIES	10	EMP3 (ENSBMSG00010018476)	ENSBMSG00010018517	ZSWIM9 (ENSBMSG00010018625)	LIG1 (ENSBMSG00010018736) #8	CABP5 (ENSBMSG00010019330)	BSPH1 (ENSBMSG00010019372)	ENSBMSG00010019459	CRX (ENSBMSG00010019483) #13	SELENOW (ENSBMSG00010019516) #14	NOP53 (ENSBMSG00010019557) #16	EHD2 (ENSBMSG00010019668) #17	BICRA (ENSBMSG00010019701)	ZNF541 (ENSBMSG00010019774) #18	NAPA (ENSBMSG00010019832) #19	SLC8A2 (ENSBMSG00010019907) #21	MEIS3 (ENSBMSG00010019996) #22	DHX34 (ENSBMSG00010020024)	C5AR2 (ENSBMSG00010020050) #23	C5AR1 (ENSBMSG00010020065) #24	CCDC9 (ENSBMSG00010020094) #25	BBC3 (ENSBMSG00010020342) #26	SAE1 (ENSBMSG00010020376) #27	ZC3H4 (ENSBMSG00010020432)	TMEM160 (ENSBMSG00010020478) #29	NPAS1 (ENSBMSG00010020493) #30	ARHGAP35 (ENSBMSG00010020533) #31	AP2S1 (ENSBMSG00010020580) #32	SLC1A5 (ENSBMSG00010020761) #33	FKRP (ENSBMSG00010020816)	STRN4 (ENSBMSG00010020831) #34	PRKD2 (ENSBMSG00010020856) #35
Odontoceti	ANCESTRAL SPECIES	6	ENSGT00950000182696.B.b	ENSGT00950000183364	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Sperm whale	MODERN SPECIES	8	NOVA2 (ENSPCTG00005012295)	HIF3A (ENSPCTG00005011738)	CCDC8 (ENSPCTG00005011665)	ENSPCTG00005011609	STRN4 (ENSPCTG00005011583) #34	ARHGAP35 (ENSPCTG00005011530) #31	ENSPCTG00005011494	ENSPCTG00005011470 #27	ENSPCTG00005011422 #27	ENSPCTG00005011401	ENSPCTG00005011381	ZNF541 (ENSPCTG00005010975) #18	NOP53 (ENSPCTG00005010906) #16	EHD2 (ENSPCTG00005010881) #17	SLC8A2 (ENSPCTG00005010761) #21	MEIS3 (ENSPCTG00005010662) #22	DHX34 (ENSPCTG00005010600)	C5AR1 (ENSPCTG00005010550) #24	C5AR2 (ENSPCTG00005010531) #23	CRX (ENSPCTG00005010490) #13	BSPH1 (ENSPCTG00005010425)	CABP5 (ENSPCTG00005010338)	LIG1 (ENSPCTG00005010166) #8	ZSWIM9 (ENSPCTG00005010099)	ENSPCTG00005009812	EMP3 (ENSPCTG00005009729)	TMEM143 (ENSPCTG00005009645)	FUT2 (ENSPCTG00005009628)	ENSPCTG00005009590	BAX (ENSPCTG00005009439)	GYS1 (ENSPCTG00005009316)
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00950000183364	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Dolphin	MODERN SPECIES	267												ZNF541 (ENSTTRG00000002308) #18	NAPA (ENSTTRG00000002302) #19	KPTN (ENSTTRG00000002295) #20	SLC8A2 (ENSTTRG00000002288) #21	MEIS3 (ENSTTRG00000002278) #22	DHX34 (ENSTTRG00000002257)	C5AR2 (ENSTTRG00000002254) #23	CCDC9 (ENSTTRG00000002244) #25	BBC3 (ENSTTRG00000002238) #26	SAE1 (ENSTTRG00000002224) #27	ZC3H4 (ENSTTRG00000002197)
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00950000183364	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00940000154315.a	ENSGT00950000182696.B.b	ENSGT00950000183364	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Beluga whale	MODERN SPECIES	14	TMEM143 (ENSDLEG00000001353)	EMP3 (ENSDLEG00000001369)	ENSDLEG00000001424	ZSWIM9 (ENSDLEG00000001465)	LIG1 (ENSDLEG00000001815) #8	CABP5 (ENSDLEG00000003694)	CRX (ENSDLEG00000003702) #13	SELENOW (ENSDLEG00000003712) #14	NOP53 (ENSDLEG00000003719) #16	EHD2 (ENSDLEG00000003725) #17	BICRA (ENSDLEG00000003735)	ZNF541 (ENSDLEG00000003750) #18	NAPA (ENSDLEG00000003763) #19	KPTN (ENSDLEG00000003782) #20	SLC8A2 (ENSDLEG00000003792) #21	MEIS3 (ENSDLEG00000003805) #22	DHX34 (ENSDLEG00000003821)	C5AR2 (ENSDLEG00000003852) #23	C5AR1 (ENSDLEG00000003857) #24	CCDC9 (ENSDLEG00000003861) #25	BBC3 (ENSDLEG00000003877) #26	SAE1 (ENSDLEG00000003883) #27	ZC3H4 (ENSDLEG00000003907)	TMEM160 (ENSDLEG00000003972) #29	ENSDLEG00000003975 #30	ENSDLEG00000003982 #30	ARHGAP35 (ENSDLEG00000003986) #31	AP2S1 (ENSDLEG00000003991) #32	SLC1A5 (ENSDLEG00000003998) #33	FKRP (ENSDLEG00000004003)	STRN4 (ENSDLEG00000004005) #34
Narwhal	MODERN SPECIES	296	TMEM143 (ENSMMNG00015001449)	EMP3 (ENSMMNG00015001411)	ENSMMNG00015001392	ZSWIM9 (ENSMMNG00015001378)	LIG1 (ENSMMNG00015001221) #8	CABP5 (ENSMMNG00015001124)	CRX (ENSMMNG00015001105) #13	SELENOW (ENSMMNG00015001091) #14	NOP53 (ENSMMNG00015001038) #16	EHD2 (ENSMMNG00015000998) #17	BICRA (ENSMMNG00015000944)	ZNF541 (ENSMMNG00015000861) #18	NAPA (ENSMMNG00015000780) #19	KPTN (ENSMMNG00015000731) #20	SLC8A2 (ENSMMNG00015000698) #21	MEIS3 (ENSMMNG00015000637) #22	DHX34 (ENSMMNG00015000592)	C5AR2 (ENSMMNG00015000578) #23	C5AR1 (ENSMMNG00015000571) #24	CCDC9 (ENSMMNG00015000542) #25	BBC3 (ENSMMNG00015000522) #26	SAE1 (ENSMMNG00015000464) #27	ZC3H4 (ENSMMNG00015000348)	TMEM160 (ENSMMNG00015000299) #29	NPAS1 (ENSMMNG00015000269) #30	ARHGAP35 (ENSMMNG00015000238) #31	AP2S1 (ENSMMNG00015000164) #32	SLC1A5 (ENSMMNG00015000079) #33	FKRP (ENSMMNG00015000038)	STRN4 (ENSMMNG00015008395) #34	PRKD2 (ENSMMNG00015008344) #35
Vaquita	MODERN SPECIES	10	TMEM143 (ENSPSNG00000019184)	EMP3 (ENSPSNG00000019298)	ENSPSNG00000019349	ZSWIM9 (ENSPSNG00000019394)	ENSPSNG00000019473	CABP5 (ENSPSNG00000019673)	CRX (ENSPSNG00000019726) #13	SELENOW (ENSPSNG00000019760) #14	NOP53 (ENSPSNG00000019800) #16	EHD2 (ENSPSNG00000019860) #17	BICRA (ENSPSNG00000019926)	ZNF541 (ENSPSNG00000020105) #18	NAPA (ENSPSNG00000020206) #19	KPTN (ENSPSNG00000020252) #20	SLC8A2 (ENSPSNG00000020290) #21	MEIS3 (ENSPSNG00000020466) #22	DHX34 (ENSPSNG00000020581)	C5AR2 (ENSPSNG00000020611) #23	C5AR1 (ENSPSNG00000020623) #24	CCDC9 (ENSPSNG00000020676) #25	BBC3 (ENSPSNG00000020767) #26	SAE1 (ENSPSNG00000020821) #27	ZC3H4 (ENSPSNG00000020937)	TMEM160 (ENSPSNG00000021070) #29	NPAS1 (ENSPSNG00000021101) #30	ARHGAP35 (ENSPSNG00000021142) #31	AP2S1 (ENSPSNG00000021195) #32	SLC1A5 (ENSPSNG00000021297) #33	FKRP (ENSPSNG00000021515)	STRN4 (ENSPSNG00000021546) #34	PRKD2 (ENSPSNG00000021606) #35
Pecora	ANCESTRAL SPECIES	4	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432.w #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Percora_a	ANCESTRAL SPECIES	4	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432.x #11	ENSGT00940000154432.w #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Bovidae	ANCESTRAL SPECIES	4	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432.x #11	ENSGT00940000154432.w.a #11	ENSGT00940000154432.w.b #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Bovinae	ANCESTRAL SPECIES	3	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432.x.a #11	ENSGT00940000154432.x.b #11	ENSGT00940000154432.w.a #11	ENSGT00940000154432.w.b #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Bos	ANCESTRAL SPECIES	4	ENSGT00940000163003	ENSGT00940000163805.a	ENSGT00940000154432.x.a #11	ENSGT00940000154432.x.b #11	ENSGT00940000154432.w.a #11	ENSGT00940000154432.w.b #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Bos_a	ANCESTRAL SPECIES	16	ENSGT00940000163003	ENSGT00940000163805.a	ENSGT00940000154432.x.b #11	ENSGT00940000154432.w.a #11	ENSGT00940000154432.w.b #11	ENSGT00940000166546	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Domestic yak	MODERN SPECIES	12	ENSBGRG00000024976 #10	BSPH1 (ENSBGRG00000024987)	ENSBGRG00000025019	ENSBGRG00000025027	SULT2A1 (ENSBGRG00000025053) #11	ENSBGRG00000025166	CRX (ENSBGRG00000025177) #13	ENSBGRG00000025192 #14	NOP53 (ENSBGRG00000025223) #16	EHD2 (ENSBGRG00000025286) #17	BICRA (ENSBGRG00000025303)	ZNF541 (ENSBGRG00000025322) #18	NAPA (ENSBGRG00000025359) #19	KPTN (ENSBGRG00000025467) #20	SLC8A2 (ENSBGRG00000025527) #21	MEIS3 (ENSBGRG00000025550) #22	ENSBGRG00000014586	C5AR2 (ENSBGRG00000014720) #23	C5AR1 (ENSBGRG00000014737) #24	INAFM1 (ENSBGRG00000014787)	CCDC9 (ENSBGRG00000014812) #25	BBC3 (ENSBGRG00000015056) #26	SAE1 (ENSBGRG00000015234) #27	ZC3H4 (ENSBGRG00000015678)	TMEM160 (ENSBGRG00000015984) #29	NPAS1 (ENSBGRG00000016050) #30	ARHGAP35 (ENSBGRG00000016330) #31	ENSBGRG00000016517 #32	SLC1A5 (ENSBGRG00000016867) #33	FKRP (ENSBGRG00000017133)	STRN4 (ENSBGRG00000017163) #34
Wild yak	MODERN SPECIES	1227									ENSBMUG00000003852 #14	NOP53 (ENSBMUG00000003894) #16	EHD2 (ENSBMUG00000003920) #17	ZNF541 (ENSBMUG00000004011) #18	NAPA (ENSBMUG00000004066) #19	KPTN (ENSBMUG00000004112) #20	SLC8A2 (ENSBMUG00000004136) #21	MEIS3 (ENSBMUG00000004394) #22	DHX34 (ENSBMUG00000004684)	C5AR2 (ENSBMUG00000004695) #23	C5AR1 (ENSBMUG00000004853) #24	INAFM1 (ENSBMUG00000004859)	CCDC9 (ENSBMUG00000004872) #25	BBC3 (ENSBMUG00000004887) #26	SAE1 (ENSBMUG00000004945) #27	ZC3H4 (ENSBMUG00000005069)	TMEM160 (ENSBMUG00000005100) #29	ENSBMUG00000005105 #30	ARHGAP35 (ENSBMUG00000005114) #31	AP2S1 (ENSBMUG00000005174) #32	SLC1A5 (ENSBMUG00000005207) #33	STRN4 (ENSBMUG00000005225) #34	PRKD2 (ENSBMUG00000005252) #35
Bos_b	ANCESTRAL SPECIES		ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805.a	ENSGT00940000154432.w.a #11	ENSGT00940000154432.w.b #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Hybrid Bos Indicus	MODERN SPECIES	9	LIG1 (ENSBIXG00005025690) #8	CABP5 (ENSBIXG00005025628)	ELSPBP1 (ENSBIXG00005025587) #10	BSPH1 (ENSBIXG00005025552)	ENSBIXG00005025524	SULT2A1 (ENSBIXG00005025492) #11	CRX (ENSBIXG00005025456) #13	ENSBIXG00005004327 #14	NOP53 (ENSBIXG00005025408) #16	EHD2 (ENSBIXG00005025382) #17	BICRA (ENSBIXG00005025350)	ZNF541 (ENSBIXG00005025312) #18	NAPA (ENSBIXG00005025291) #19	KPTN (ENSBIXG00005006855) #20	SLC8A2 (ENSBIXG00005025226) #21	MEIS3 (ENSBIXG00005025204) #22	DHX34 (ENSBIXG00005004281)	C5AR2 (ENSBIXG00005025135) #23	C5AR1 (ENSBIXG00005025115) #24	CCDC9 (ENSBIXG00005025090) #25	BBC3 (ENSBIXG00005024989) #26	SAE1 (ENSBIXG00005024933) #27	ZC3H4 (ENSBIXG00005024863)	ENSBIXG00005024833 #29	NPAS1 (ENSBIXG00005024813) #30	ARHGAP35 (ENSBIXG00005004231) #31	AP2S1 (ENSBIXG00005024725) #32	SLC1A5 (ENSBIXG00005024582) #33	FKRP (ENSBIXG00005024505)	STRN4 (ENSBIXG00005024484) #34	PRKD2 (ENSBIXG00005024335) #35
Cow	MODERN SPECIES	9	ZSWIM9 (ENSBTAG00000014597)	LIG1 (ENSBTAG00000014595) #8	CABP5 (ENSBTAG00000016114)	ELSPBP1 (ENSBTAG00000016113) #10	ENSBTAG00000040054	ENSBTAG00000039971 #11	SULT2A1 (ENSBTAG00000023419) #11	CRX (ENSBTAG00000021185) #13	NOP53 (ENSBTAG00000021192) #16	EHD2 (ENSBTAG00000021191) #17	BICRA (ENSBTAG00000004138)	ZNF541 (ENSBTAG00000012606) #18	NAPA (ENSBTAG00000013084) #19	KPTN (ENSBTAG00000030769) #20	SLC8A2 (ENSBTAG00000010856) #21	MEIS3 (ENSBTAG00000006862) #22	DHX34 (ENSBTAG00000006848)	C5AR2 (ENSBTAG00000037735) #23	C5AR1 (ENSBTAG00000020872) #24	INAFM1 (ENSBTAG00000053132)	CCDC9 (ENSBTAG00000014117) #25	BBC3 (ENSBTAG00000050313) #26	SAE1 (ENSBTAG00000002676) #27	ZC3H4 (ENSBTAG00000009286)	TMEM160 (ENSBTAG00000015579) #29	NPAS1 (ENSBTAG00000015576) #30	ARHGAP35 (ENSBTAG00000015543) #31	AP2S1 (ENSBTAG00000010584) #32	SLC1A5 (ENSBTAG00000013577) #33	FKRP (ENSBTAG00000050243)	STRN4 (ENSBTAG00000005830) #34
American bison	MODERN SPECIES	3227							CRX (ENSBBBG00000003180) #13	SELENOW (ENSBBBG00000014141) #14	NOP53 (ENSBBBG00000014154) #16	EHD2 (ENSBBBG00000006945) #17	BICRA (ENSBBBG00000003213)	ZNF541 (ENSBBBG00000014201) #18	NAPA (ENSBBBG00000014223) #19	KPTN (ENSBBBG00000014243) #20	SLC8A2 (ENSBBBG00000014252) #21	MEIS3 (ENSBBBG00000009054) #22	DHX34 (ENSBBBG00000014324)	C5AR1 (ENSBBBG00000003265) #24	CCDC9 (ENSBBBG00000014362) #25	BBC3 (ENSBBBG00000014369) #26	SAE1 (ENSBBBG00000014398) #27	ENSBBBG00000003321 #29	ENSBBBG00000014422 #30	ARHGAP35 (ENSBBBG00000014432) #31	AP2S1 (ENSBBBG00000002880) #32	SLC1A5 (ENSBBBG00000003362) #33	STRN4 (ENSBBBG00000007553) #34	PRKD2 (ENSBBBG00000007407) #35	ENSBBBG00000014572 #36	GNG8 (ENSBBBG00000007169) #37	PTGIR (ENSBBBG00000014585)
Caprinae	ANCESTRAL SPECIES	4	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000154432.w.a #11	ENSGT00940000154432.w.b #11	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00550000076229	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34
Rambouillet Sheep	MODERN SPECIES	5	LIG1 (ENSOARG00020014185) #8	CABP5 (ENSOARG00020014100)	ELSPBP1 (ENSOARG00020013971) #10	BSPH1 (ENSOARG00020013879)	ENSOARG00020013825 #11	SULT2A1 (ENSOARG00020013754) #11	CRX (ENSOARG00020013684) #13	SELENOW (ENSOARG00020013536) #14	NOP53 (ENSOARG00020013455) #16	EHD2 (ENSOARG00020013411) #17	BICRA (ENSOARG00020013244)	ZNF541 (ENSOARG00020012969) #18	NAPA (ENSOARG00020012824) #19	KPTN (ENSOARG00020012769) #20	SLC8A2 (ENSOARG00020012581) #21	MEIS3 (ENSOARG00020012359) #22	DHX34 (ENSOARG00020012207)	C5AR2 (ENSOARG00020012174) #23	C5AR1 (ENSOARG00020012129) #24	INAFM1 (ENSOARG00020012115)	CCDC9 (ENSOARG00020012051) #25	BBC3 (ENSOARG00020011954) #26	SAE1 (ENSOARG00020011750) #27	ZC3H4 (ENSOARG00020011583)	TMEM160 (ENSOARG00020011550) #29	NPAS1 (ENSOARG00020011377) #30	ARHGAP35 (ENSOARG00020011291) #31	AP2S1 (ENSOARG00020010737) #32	SLC1A5 (ENSOARG00020010548) #33	FKRP (ENSOARG00020010516)	STRN4 (ENSOARG00020009995) #34
Goat	MODERN SPECIES	9	ZSWIM9 (ENSCHIG00000017474)	LIG1 (ENSCHIG00000025924) #8	ELSPBP1 (ENSCHIG00000008826) #10	BSPH1 (ENSCHIG00000022423)	ENSCHIG00000020372 #11	ENSCHIG00000013073 #11	CRX (ENSCHIG00000023022) #13	ENSCHIG00000022860 #14	NOP53 (ENSCHIG00000009393) #16	EHD2 (ENSCHIG00000011896) #17	BICRA (ENSCHIG00000012752)	ZNF541 (ENSCHIG00000013773) #18	NAPA (ENSCHIG00000023468) #19	KPTN (ENSCHIG00000019625) #20	SLC8A2 (ENSCHIG00000005606) #21	MEIS3 (ENSCHIG00000013472) #22	DHX34 (ENSCHIG00000024526)	C5AR2 (ENSCHIG00000003475) #23	C5AR1 (ENSCHIG00000016291) #24	INAFM1 (ENSCHIG00000003153)	CCDC9 (ENSCHIG00000008730) #25	ENSCHIG00000023357	BBC3 (ENSCHIG00000010347) #26	SAE1 (ENSCHIG00000026570) #27	ZC3H4 (ENSCHIG00000013956)	TMEM160 (ENSCHIG00000020208) #29	NPAS1 (ENSCHIG00000006784) #30	ARHGAP35 (ENSCHIG00000024478) #31	AP2S1 (ENSCHIG00000022984) #32	SLC1A5 (ENSCHIG00000020955) #33	FKRP (ENSCHIG00000005654)
Siberian musk deer	MODERN SPECIES	124	LIG1 (ENSMMSG00000000695) #8	CABP5 (ENSMMSG00000000844)	ELSPBP1 (ENSMMSG00000000869) #10	ENSMMSG00000000893	ENSMMSG00000000912 #11	ENSMMSG00000000929 #11	CRX (ENSMMSG00000000942) #13	ENSMMSG00000000961 #14	NOP53 (ENSMMSG00000000991) #16	EHD2 (ENSMMSG00000001026) #17	BICRA (ENSMMSG00000001054)	ZNF541 (ENSMMSG00000001131) #18	NAPA (ENSMMSG00000001259) #19	KPTN (ENSMMSG00000001314) #20	SLC8A2 (ENSMMSG00000001344) #21	MEIS3 (ENSMMSG00000001373) #22	DHX34 (ENSMMSG00000001413)	C5AR2 (ENSMMSG00000001489) #23	C5AR1 (ENSMMSG00000001497) #24	CCDC9 (ENSMMSG00000001515) #25	BBC3 (ENSMMSG00000001565) #26	ENSMMSG00000001602 #27	ZC3H4 (ENSMMSG00000001677)	TMEM160 (ENSMMSG00000001690) #29	NPAS1 (ENSMMSG00000001706) #30	ARHGAP35 (ENSMMSG00000001730) #31	AP2S1 (ENSMMSG00000001766) #32	SLC1A5 (ENSMMSG00000001866) #33	FKRP (ENSMMSG00000001899)	STRN4 (ENSMMSG00000001918) #34	PRKD2 (ENSMMSG00000002012) #35
Yarkand deer	MODERN SPECIES	27	LIG1 (ENSCHYG00000020178) #8	CABP5 (ENSCHYG00000020089)	ELSPBP1 (ENSCHYG00000019986) #10	ENSCHYG00000019831	ENSCHYG00000019726	SULT2A1 (ENSCHYG00000019298) #11	CRX (ENSCHYG00000019234) #13	ENSCHYG00000019212 #14	NOP53 (ENSCHYG00000018854) #16	EHD2 (ENSCHYG00000018732) #17	BICRA (ENSCHYG00000018651)	ZNF541 (ENSCHYG00000018471) #18	NAPA (ENSCHYG00000018302) #19	KPTN (ENSCHYG00000018196) #20	SLC8A2 (ENSCHYG00000018134) #21	MEIS3 (ENSCHYG00000017783) #22	DHX34 (ENSCHYG00000017576)	C5AR2 (ENSCHYG00000017549) #23	ENSCHYG00000017494	C5AR1 (ENSCHYG00000017464) #24	INAFM1 (ENSCHYG00000017434)	ENSCHYG00000017388	CCDC9 (ENSCHYG00000017076) #25	ENSCHYG00000017008	SAE1 (ENSCHYG00000016642) #27	ZC3H4 (ENSCHYG00000016192)	TMEM160 (ENSCHYG00000016093) #29	NPAS1 (ENSCHYG00000015977) #30	ARHGAP35 (ENSCHYG00000015852) #31	AP2S1 (ENSCHYG00000015644) #32	SLC1A5 (ENSCHYG00000015481) #33
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000161057 #22
Hedgehog	MODERN SPECIES	893																ENSEEUG00000006123 #22
Common shrew	MODERN SPECIES	496																ENSSARG00000004351 #22
Atlantogenata	ANCESTRAL SPECIES	48	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000154432 #11	ENSGT00940000163048	ENSGT00940000166546	ENSGT00940000161634 #13	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Xenarthra	ANCESTRAL SPECIES	251				ENSGT00940000163048	ENSGT00940000154432 #11	ENSGT00940000163805	ENSGT00940000166546	ENSGT00940000161634 #13	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.g #24
Armadillo	MODERN SPECIES	3535										ENSDNOG00000043390 #17	BICRA (ENSDNOG00000044109)	ZNF541 (ENSDNOG00000049267) #18	NAPA (ENSDNOG00000032517) #19	KPTN (ENSDNOG00000043885) #20	SLC8A2 (ENSDNOG00000024107) #21	MEIS3 (ENSDNOG00000005541) #22	DHX34 (ENSDNOG00000031738)	C5AR1 (ENSDNOG00000038763) #24	ENSDNOG00000038380	ENSDNOG00000036704
Afrotheria	ANCESTRAL SPECIES	22	ENSGT00530000063801.b	ENSGT00960000186612.A.b	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000161634 #13	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Tenrec	MODERN SPECIES	13430																MEIS3 (ENSETEG00000009874) #22
Afrotheria_a	ANCESTRAL SPECIES	21	ENSGT00530000063801.b	ENSGT00960000186612.A.b	ENSGT00390000011694	ENSGT00940000157783 #8	ENSGT00940000160506	ENSGT00940000162766 #10	ENSGT00940000163003	ENSGT00940000163805	ENSGT00940000161634 #13	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Hyrax	MODERN SPECIES	608																MEIS3 (ENSPCAG00000016512) #22
Elephant	MODERN SPECIES	375	ENSLAFG00000003556	ENSLAFG00000031844	ENSLAFG00000022646	LIG1 (ENSLAFG00000008673) #8	CABP5 (ENSLAFG00000005327)	ELSPBP1 (ENSLAFG00000017403) #10	BSPH1 (ENSLAFG00000020529)	ENSLAFG00000028834	CRX (ENSLAFG00000007254) #13	EHD2 (ENSLAFG00000029346) #17	ENSLAFG00000023304	ENSLAFG00000015647	ZNF541 (ENSLAFG00000009287) #18	NAPA (ENSLAFG00000009284) #19	KPTN (ENSLAFG00000009281) #20	MEIS3 (ENSLAFG00000031905) #22	DHX34 (ENSLAFG00000003186)	C5AR1 (ENSLAFG00000023333) #24	CCDC9 (ENSLAFG00000026191) #25	BBC3 (ENSLAFG00000008852) #26	SAE1 (ENSLAFG00000001593) #27	ZC3H4 (ENSLAFG00000001586)	TMEM160 (ENSLAFG00000014543) #29	ARHGAP35 (ENSLAFG00000018311) #31	ENSLAFG00000026512 #32	SLC1A5 (ENSLAFG00000000671) #33	FKRP (ENSLAFG00000025662)	STRN4 (ENSLAFG00000004220) #34	PRKD2 (ENSLAFG00000021718) #35	DACT3 (ENSLAFG00000000449) #36	PTGIR (ENSLAFG00000021881)
Marsupialia	ANCESTRAL SPECIES	20	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00940000160281	ENSGT00940000161634 #13	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00940000160281	ENSGT00940000161634 #13	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Diprotodontia	ANCESTRAL SPECIES	58	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00940000160281	ENSGT00940000161634 #13	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
Diprotodontia_a	ANCESTRAL SPECIES	56	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00940000160281	ENSGT00940000161634 #13	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721	ENSGT01100000263564.a.h #23	ENSGT01100000263564.a.g #24	ENSGT00530000063950.a.b #25	ENSGT00390000002767 #26	ENSGT00550000075007 #27	ENSGT00940000160011	ENSGT00390000012863 #29	ENSGT00940000161295 #30	ENSGT01030000234635.a.b.a.b.b.a.b #31	ENSGT00970000193421.A #32	ENSGT00940000159485 #33	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a #34	ENSGT00950000183024.a.b.b #35
koala	MODERN SPECIES	345	TGFB1 (ENSPCIG00000016755)	B9D2 (ENSPCIG00000016752)	ENSPCIG00000031405	EXOSC5 (ENSPCIG00000016745)	BCKDHA (ENSPCIG00000016741)	B3GNT8 (ENSPCIG00000016739)	PRSS16 (ENSPCIG00000016736)	ENSPCIG00000016733	NOP53 (ENSPCIG00000016718) #16	EHD2 (ENSPCIG00000016714) #17	BICRA (ENSPCIG00000016713)	ZNF541 (ENSPCIG00000007543) #18	NAPA (ENSPCIG00000016508) #19	KPTN (ENSPCIG00000016494) #20	SLC8A2 (ENSPCIG00000016491) #21	MEIS3 (ENSPCIG00000016488) #22	DHX34 (ENSPCIG00000000889)	ENSPCIG00000000869 #23	C5AR1 (ENSPCIG00000000822) #24	CCDC9 (ENSPCIG00000028131) #25	ENSPCIG00000028133 #26	SAE1 (ENSPCIG00000028135) #27	ZC3H4 (ENSPCIG00000028138)	TMEM160 (ENSPCIG00000028139) #29	NPAS1 (ENSPCIG00000032390) #30	ARHGAP35 (ENSPCIG00000025775) #31	ENSPCIG00000025776 #32	SLC1A5 (ENSPCIG00000025777) #33	FKRP (ENSPCIG00000025778)	STRN4 (ENSPCIG00000025779) #34	PRKD2 (ENSPCIG00000025780) #35
Common wonbat	MODERN SPECIES	1158	B9D2 (ENSVURG00010003328)	ENSVURG00010003314	EXOSC5 (ENSVURG00010003301)	BCKDHA (ENSVURG00010003253)	B3GNT8 (ENSVURG00010003243)	ENSVURG00010003220	PRSS16 (ENSVURG00010003162)	CRX (ENSVURG00010003112) #13	NOP53 (ENSVURG00010003088) #16	EHD2 (ENSVURG00010003073) #17	BICRA (ENSVURG00010002965)	ZNF541 (ENSVURG00010002837) #18	NAPA (ENSVURG00010002799) #19	ENSVURG00010002786 #20	SLC8A2 (ENSVURG00010002773) #21	MEIS3 (ENSVURG00010022726) #22	DHX34 (ENSVURG00010022703)	C5AR2 (ENSVURG00010022700) #23	ENSVURG00010022698 #24	CCDC9 (ENSVURG00010022694) #25	ENSVURG00010022689 #26	ENSVURG00010022683 #27	ENSVURG00010022671	ENSVURG00010022668 #29	ENSVURG00010022660 #30	ENSVURG00010022649 #31	ENSVURG00010022632 #32	ENSVURG00010022289 #33	ENSVURG00010022272	ENSVURG00010022263 #34	ENSVURG00010021751 #35
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000025993	ENSSHAG00000025734	ENSSHAG00000005012	ENSSHAG00000005291	HNRNPUL1 (ENSSHAG00000005904)	B9D2 (ENSSHAG00000026978)	ENSSHAG00000022177	ENSSHAG00000025782	ENSSHAG00000003069	ENSSHAG00000002757 #13	NOP53 (ENSSHAG00000023645) #16	ENSSHAG00000026122 #17	ZNF541 (ENSSHAG00000003056) #18	NAPA (ENSSHAG00000022077) #19	ENSSHAG00000024846	MEIS3 (ENSSHAG00000021311) #22	ENSSHAG00000030420 #14	ENSSHAG00000029825	C5AR2 (ENSSHAG00000027588) #23	ENSSHAG00000001420 #24	SAE1 (ENSSHAG00000002813) #27	ZC3H4 (ENSSHAG00000028166)	NPAS1 (ENSSHAG00000024261) #30	ARHGAP35 (ENSSHAG00000006639) #31	AP2S1 (ENSSHAG00000026500) #32	SLC1A5 (ENSSHAG00000026042) #33	PRKD2 (ENSSHAG00000021404) #35	ENSSHAG00000025928	ENSSHAG00000020505	DACT3 (ENSSHAG00000031611) #36	ENSSHAG00000030771
Platypus	MODERN SPECIES	16	HNRNPUL1 (ENSOANG00000011111)	CCDC97 (ENSOANG00000032082)	TGFB1 (ENSOANG00000043657)	B9D2 (ENSOANG00000046421)	EXOSC5 (ENSOANG00000044960)	BCKDHA (ENSOANG00000008790)	B3GNT8 (ENSOANG00000041802)	ENSOANG00000048851	ENSOANG00000036512	ENSOANG00000032145	ENSOANG00000047615	NOP53 (ENSOANG00000050511) #16	NAPA (ENSOANG00000036278) #19	KPTN (ENSOANG00000021752) #20	SLC8A2 (ENSOANG00000040184) #21	MEIS3 (ENSOANG00000048143) #22	ENSOANG00000003497	PSMD8 (ENSOANG00000042903)	ENSOANG00000041545	ENSOANG00000037098	RASGRP4 (ENSOANG00000037488)	RYR1 (ENSOANG00000047642)	MAP4K1 (ENSOANG00000000504)	EIF3K (ENSOANG00000012188)	ACTN4 (ENSOANG00000036034)	CAPN12 (ENSOANG00000042811)	ENSOANG00000000347	ENSOANG00000003642	ENSOANG00000046197	ENSOANG00000041325	ECH1 (ENSOANG00000048825)
Sauria	ANCESTRAL SPECIES	34	ENSGT00940000160281	ENSGT00940000161634 #13	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000171204	ENSGT01100000263504.a.b.a.a	ENSGT01090000260005.a.b.a.b.b	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000161901	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00940000158431.a.a.a.a.b.a	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00390000014139	ENSGT00390000014682	ENSGT00940000170834	ENSGT00940000161445	ENSGT00440000037341.b.b	ENSGT00940000159883	ENSGT00940000155288.b	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b
Lepidosauria	ANCESTRAL SPECIES	344																ENSGT00940000161057 #22	ENSGT00990000206928
tuatara	MODERN SPECIES	252					ENSSPUG00000003825	ENSSPUG00000003837	ACTN4 (ENSSPUG00000003851)	ENSSPUG00000003867	ENSSPUG00000003876	ENSSPUG00000003888	ENSSPUG00000003895	ENSSPUG00000003904	RYR1 (ENSSPUG00000003931)	RASGRP4 (ENSSPUG00000004080)	PSMD8 (ENSSPUG00000004168)	ENSSPUG00000004185 #22	ENSSPUG00000004198	SLC8A2 (ENSSPUG00000004209) #21	KPTN (ENSSPUG00000004236) #20	NAPA (ENSSPUG00000004295) #19	ENSSPUG00000004304	ZNF541 (ENSSPUG00000004315) #18	BICRA (ENSSPUG00000004347)	EHD2 (ENSSPUG00000004401) #17	NOP53 (ENSSPUG00000004420) #16	ENSSPUG00000004450	SELENOW (ENSSPUG00000004460) #14	ENSSPUG00000004466	ENSSPUG00000004471
Episquamata	ANCESTRAL SPECIES	7	ENSGT00390000018436.b	ENSGT00940000166514	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000159610	ENSGT00940000160378	ENSGT00940000159343	ENSGT00390000009409	ENSGT00940000160308	ENSGT00940000155288.b	ENSGT00940000159883	ENSGT00440000037341.b.b	ENSGT00940000161445	ENSGT00940000170834	ENSGT00390000014682	ENSGT00390000014139	ENSGT00940000161057 #22	ENSGT00940000158344.b #21	ENSGT00390000002548 #20	ENSGT00390000005826.a.a #19	ENSGT00940000158431.a.a.a.a.b.a	ENSGT00940000160330 #18	ENSGT00940000159112.b	ENSGT00940000161901	ENSGT00940000159256 #17	ENSGT00390000017267 #16	ENSGT01090000260005.a.b.a.b.b	ENSGT00940000161069 #14	ENSGT01100000263504.a.b.b.a.b	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000161634 #13	ENSGT00940000160281
Laterata	ANCESTRAL SPECIES	17	ENSGT00390000018436.b	ENSGT00940000166514	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000159610	ENSGT00940000160378	ENSGT00940000159343	ENSGT00390000009409	ENSGT00940000160308	ENSGT00940000155288.b	ENSGT00940000159883	ENSGT00440000037341.b.b	ENSGT00940000161445	ENSGT00940000170834	ENSGT00390000014682	ENSGT00390000014139	ENSGT00940000161057 #22	ENSGT00940000158344.b #21	ENSGT00390000002548 #20	ENSGT00390000005826.a.a #19	ENSGT00940000158431.a.a.a.a.b.a	ENSGT00940000160330 #18	ENSGT00940000159112.b	ENSGT00940000161901	ENSGT00940000159256 #17	ENSGT00390000017267 #16	ENSGT01090000260005.a.b.a.b.b	ENSGT00940000161069 #14	ENSGT00940000161634 #13	ENSGT00940000160281	ENSGT00940000160500	ENSGT00940000161895
Argentine black and white tegu	MODERN SPECIES	59	HNRNPL (ENSSMRG00000015085)	ECH1 (ENSSMRG00000015084)	LGALS4 (ENSSMRG00000015083)	ENSSMRG00000015082	ACTN4 (ENSSMRG00000015081)	EIF3K (ENSSMRG00000015080)	ENSSMRG00000015079	RYR1 (ENSSMRG00000007722)	ENSSMRG00000007638	RASGRP4 (ENSSMRG00000007635)	ENSSMRG00000007629	SPRED3 (ENSSMRG00000007622)	ENSSMRG00000007620	PSMD8 (ENSSMRG00000007610)	ENSSMRG00000007593	ENSSMRG00000007233 #22	SLC8A2 (ENSSMRG00000007223) #21	KPTN (ENSSMRG00000007219) #20	NAPA (ENSSMRG00000007212) #19	ENSSMRG00000007202	ZNF541 (ENSSMRG00000007167) #18	BICRA (ENSSMRG00000007162)	ENSSMRG00000007159	EHD2 (ENSSMRG00000007155) #17	NOP53 (ENSSMRG00000007150) #16	ENSSMRG00000007149	SELENOW (ENSSMRG00000007145) #14	ENSSMRG00000007141	ENSSMRG00000007137	ENSSMRG00000007133	DMAC2 (ENSSMRG00000007131)
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000012190	ENSPMRG00000012186	HNRNPL (ENSPMRG00000012182)	ECH1 (ENSPMRG00000012178)	LGALS4 (ENSPMRG00000012171)	ACTN4 (ENSPMRG00000012127)	EIF3K (ENSPMRG00000012120)	MAP4K1 (ENSPMRG00000012108)	ENSPMRG00000012102	RYR1 (ENSPMRG00000010440)	RASGRP4 (ENSPMRG00000010019)	ENSPMRG00000010006	SPRED3 (ENSPMRG00000009999)	PSMD8 (ENSPMRG00000009992)	ENSPMRG00000009984	ENSPMRG00000009975 #22	SLC8A2 (ENSPMRG00000009969) #21	KPTN (ENSPMRG00000009957) #20	NAPA (ENSPMRG00000009946) #19	ENSPMRG00000009933	BICRA (ENSPMRG00000009906)	ENSPMRG00000009894	ENSPMRG00000009885	ENSPMRG00000009877	ENSPMRG00000009869	ENSPMRG00000009823	AKT2 (ENSPMRG00000009772)	ENSPMRG00000009744	TTC9B (ENSPMRG00000009737)	MAP3K10 (ENSPMRG00000009719)	ENSPMRG00000009706
Toxicofera	ANCESTRAL SPECIES	22	ENSGT00390000018436.b	ENSGT00940000166514	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000159610	ENSGT00940000160378	ENSGT00940000159343	ENSGT00390000009409	ENSGT00940000160308	ENSGT00940000155288.b	ENSGT00940000159883	ENSGT00440000037341.b.b	ENSGT00940000161445	ENSGT00940000170834	ENSGT00390000014682	ENSGT00390000014139	ENSGT00940000161057 #22	ENSGT00940000158344.b #21	ENSGT00390000002548 #20	ENSGT00390000005826.a.a #19	ENSGT00940000158431.a.a.a.a.b.a	ENSGT00940000160330 #18	ENSGT00940000159112.b	ENSGT00940000159256 #17	ENSGT00390000017267 #16	ENSGT00940000161069 #14	ENSGT01090000260005.a.b.a.b.b	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000161634 #13	ENSGT00940000160281	ENSGT00940000160500	ENSGT00940000161895
Elapidae	ANCESTRAL SPECIES	9	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000159610	ENSGT00940000160378.s.b	ENSGT00940000160378.s.a.a.b	ENSGT00940000159343	ENSGT00390000009409	ENSGT00940000160308.eb	ENSGT00940000155288.b	ENSGT00940000159883	ENSGT00440000037341.b.b	ENSGT00940000161445.cb	ENSGT00940000170834	ENSGT00940000161445.bb	ENSGT00390000014682.a	ENSGT00390000014139	ENSGT00940000161057 #22	ENSGT00940000158344.b #21	ENSGT00390000002548.d #20	ENSGT00390000005826.a.a #19	ENSGT00940000158431.a.a.a.a.b.a	ENSGT00940000160330 #18	ENSGT00940000159112.b	ENSGT00940000159256 #17	ENSGT00390000017267 #16	ENSGT00940000161069 #14	ENSGT01090000260005.a.b.a.b.b	ENSGT00940000162247.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000161634 #13	ENSGT00940000160281	ENSGT00940000160500
Indian cobra	MODERN SPECIES	11	ENSNNAG00000015667	ENSNNAG00000015648	ENSNNAG00000015639	ENSNNAG00000015628	ENSNNAG00000015604	ACTN4 (ENSNNAG00000013992)	ENSNNAG00000013900	EIF3K (ENSNNAG00000013884)	ENSNNAG00000013850	RASGRP4 (ENSNNAG00000004377)	ENSNNAG00000004328	ENSNNAG00000004317	ENSNNAG00000004295	PSMD8 (ENSNNAG00000004223)	ENSNNAG00000003932	ENSNNAG00000003835 #22	KPTN (ENSNNAG00000003787) #20	ENSNNAG00000015768 #19	ENSNNAG00000015751	ZNF541 (ENSNNAG00000015741) #18	BICRA (ENSNNAG00000015716)	EHD2 (ENSNNAG00000015707) #17	NOP53 (ENSNNAG00000015645) #16	GJD2 (ENSNNAG00000015624)	ENSNNAG00000015613	ENSNNAG00000015606	ENSNNAG00000015597 #13	EXOSC5 (ENSNNAG00000015576)	TMEM91 (ENSNNAG00000015567)	ENSNNAG00000015558	CCDC97 (ENSNNAG00000015532)
Elapidae_a	ANCESTRAL SPECIES	33	ENSGT00940000159610	ENSGT00940000160378.s.b	ENSGT00940000160378.s.a.a.b.b	ENSGT01050000246816	ENSGT00940000160378.s.a.a.b.a	ENSGT00940000159343	ENSGT00390000009409	ENSGT00940000160308.eb	ENSGT00940000155288.b	ENSGT00940000159883	ENSGT00440000037341.b.b	ENSGT00940000161445.cb	ENSGT00940000161445.bb	ENSGT00390000014682.a	ENSGT00390000014139	ENSGT00940000161057 #22	ENSGT00940000158344.b #21	ENSGT00390000002548.d #20	ENSGT00390000002548.c #20	ENSGT00390000005826.a.a #19	ENSGT00940000158431.a.a.a.a.b.a	ENSGT00940000160330 #18	ENSGT00940000159112.b	ENSGT00940000159256 #17	ENSGT00390000017267 #16	ENSGT00940000161069 #14	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000161634 #13	ENSGT00940000160281	ENSGT00940000160500	ENSGT00940000161895
Acanthophiinae	ANCESTRAL SPECIES	32	ENSGT00940000166514	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000159610	ENSGT00940000160378.s.b	ENSGT00940000160378.s.a.a.b.b	ENSGT01050000246816	ENSGT00940000160378.s.a.a.b.a	ENSGT00940000159343	ENSGT00390000009409	ENSGT00940000160308.eb	ENSGT00940000155288.b	ENSGT00940000159883	ENSGT00940000161445.bb	ENSGT00390000014682.a	ENSGT00390000014139	ENSGT00940000161057 #22	ENSGT00940000158344.b #21	ENSGT00390000002548.c #20	ENSGT00390000005826.a.a #19	ENSGT00940000158431.a.a.a.a.b.a	ENSGT00940000160330 #18	ENSGT00940000159112.b	ENSGT00940000159256 #17	ENSGT00390000017267 #16	ENSGT00940000161069 #14	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000161634 #13	ENSGT00940000160281	ENSGT00940000160500	ENSGT00940000161895	ENSGT00530000063174.b
Eastern brown snake	MODERN SPECIES	77	ENSPTXG00000017255	HNRNPL (ENSPTXG00000012356)	ECH1 (ENSPTXG00000012357)	ENSPTXG00000012361	ENSPTXG00000012363	ACTN4 (ENSPTXG00000012365)	EIF3K (ENSPTXG00000012439)	ENSPTXG00000012442	RYR1 (ENSPTXG00000012560)	ENSPTXG00000019017	RASGRP4 (ENSPTXG00000019018)	SPRED3 (ENSPTXG00000019020)	PSMD8 (ENSPTXG00000019025)	ENSPTXG00000019026	ENSPTXG00000019027	ENSPTXG00000019028 #22	SLC8A2 (ENSPTXG00000019029) #21	ENSPTXG00000019030 #20	ENSPTXG00000019031 #20	NAPA (ENSPTXG00000019032) #19	ENSPTXG00000019033	ZNF541 (ENSPTXG00000019034) #18	BICRA (ENSPTXG00000019035)	EHD2 (ENSPTXG00000019036) #17	NOP53 (ENSPTXG00000019037) #16	ENSPTXG00000019039	ENSPTXG00000019040	ENSPTXG00000019041	CRX (ENSPTXG00000019042) #13	ENSPTXG00000019043	DMAC2 (ENSPTXG00000019044)
Archelosauria	ANCESTRAL SPECIES	33	ENSGT00940000160281	ENSGT00940000161634 #13	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000171204	ENSGT01100000263504.a.b.a.a	ENSGT01090000260005.a.b.a.b.b	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000161901	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00940000158431.a.a.a.a.b.a	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00390000014139	ENSGT00390000014682	ENSGT00940000170834	ENSGT00940000161445	ENSGT00440000037341.b.b	ENSGT00940000159883	ENSGT00940000155288.b	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b
Cryptodira	ANCESTRAL SPECIES	35	ENSGT00940000160281	ENSGT00940000161634 #13	ENSGT01100000263504.a.b.a.b.a.b	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000161069 #14	ENSGT01090000260005.a.b.a.b.b	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000161901	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00940000158431.a.a.a.a.b.a	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00390000014139	ENSGT00390000014682	ENSGT00940000170834	ENSGT00940000161445	ENSGT00440000037341.b.b	ENSGT00940000159883	ENSGT00940000155288.b	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b
Testudinoidea	DUPLICATION
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00940000161057.e #22
Emydidae	ANCESTRAL SPECIES																	ENSGT00940000161057.e #22
Three-toed box turtle	MODERN SPECIES	1767																ENSTMTG00000008520 #22
Testudinoidea	ANCESTRAL SPECIES	30	ENSGT00940000161895	ENSGT00940000160500	ENSGT00940000160281	ENSGT00940000161634 #13	ENSGT01100000263504.a.b.a.b.a.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000161901	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00940000158431.a.a.a.a.b.a	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057.f #22	ENSGT00390000014139	ENSGT00390000014682	ENSGT00940000170834	ENSGT00940000161445	ENSGT00440000037341.b.b.b	ENSGT00940000159883	ENSGT00940000155288.b	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378.q.a	ENSGT00940000160378.r	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514
Emydidae	ANCESTRAL SPECIES	45	ENSGT00940000161895	ENSGT00940000160500	ENSGT00940000160281	ENSGT00940000161634 #13	ENSGT01100000263504.a.b.a.b.a.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000161901	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00940000158431.a.a.a.a.b.a	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057.f #22	ENSGT00390000014139	ENSGT00390000014682	ENSGT00940000170834	ENSGT00940000161445	ENSGT00440000037341.b.b.b	ENSGT00940000159883	ENSGT00940000159343	ENSGT00940000160378.r	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595
Three-toed box turtle	MODERN SPECIES	252	BCKDHA (ENSTMTG00000003495)	B3GNT8 (ENSTMTG00000003523)	DMAC2 (ENSTMTG00000003536)	ENSTMTG00000003567	ENSTMTG00000003605	ENSTMTG00000003643	SELENOW (ENSTMTG00000003661) #14	EHD2 (ENSTMTG00000003679) #17	ENSTMTG00000003694	BICRA (ENSTMTG00000003713)	ZNF541 (ENSTMTG00000003768) #18	ENSTMTG00000003897	NAPA (ENSTMTG00000003917) #19	KPTN (ENSTMTG00000003997) #20	SLC8A2 (ENSTMTG00000004021) #21	ENSTMTG00000004088 #22	CATSPERG (ENSTMTG00000004257)	PSMD8 (ENSTMTG00000004454)	ENSTMTG00000004485	SPRED3 (ENSTMTG00000004543)	ENSTMTG00000004865	RASGRP4 (ENSTMTG00000004905)	ACTN4 (ENSTMTG00000005102)	ENSTMTG00000005159	ECH1 (ENSTMTG00000005387)	HNRNPL (ENSTMTG00000005412)	ENSTMTG00000005568	ENSTMTG00000005579	ENSTMTG00000005615	SIRT2 (ENSTMTG00000005655)	NFKBIB (ENSTMTG00000005722)
painted turtle	MODERN SPECIES	949	ENSCPBG00000009093	CRX (ENSCPBG00000009076) #13	ENSCPBG00000009066	ENSCPBG00000009062	ENSCPBG00000009057	NOP53 (ENSCPBG00000009047) #16	EHD2 (ENSCPBG00000009041) #17	ENSCPBG00000009033	ENSCPBG00000009030	BICRA (ENSCPBG00000009017)	ZNF541 (ENSCPBG00000009004) #18	ENSCPBG00000009000	NAPA (ENSCPBG00000008994) #19	KPTN (ENSCPBG00000008980) #20	SLC8A2 (ENSCPBG00000008974) #21	MEIS3 (ENSCPBG00000008795) #22	ENSCPBG00000008758	PSMD8 (ENSCPBG00000008752)	ENSCPBG00000008745	SPRED3 (ENSCPBG00000008735)	ENSCPBG00000008730	ENSCPBG00000008728	RASGRP4 (ENSCPBG00000008705)	ENSCPBG00000008694	ENSCPBG00000008686
Testudinidae	ANCESTRAL SPECIES	36	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00940000160281	ENSGT00940000161634 #13	ENSGT01090000260005.a.b.a.b.b	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000161901	ENSGT00940000159112.b	ENSGT00940000160330 #18	ENSGT00940000158431.a.a.a.a.b.a	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057.f #22	ENSGT00390000014139	ENSGT00390000014682	ENSGT00940000170834	ENSGT00940000161445	ENSGT00440000037341.b.b.a	ENSGT00440000037341.b.b.b	ENSGT00940000159883	ENSGT00940000155288.b	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378.q.a	ENSGT00940000160378.r	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d
Goode s thornscrub tortoise	MODERN SPECIES	134	DMAC2 (ENSGEVG00005014708)	PRSS16 (ENSGEVG00005014791)	ENSGEVG00005014823	ENSGEVG00005014898	ENSGEVG00005014920	GJD2 (ENSGEVG00005014943)	NOP53 (ENSGEVG00005014974) #16	EHD2 (ENSGEVG00005015006) #17	CAPN12 (ENSGEVG00005015065)	BICRA (ENSGEVG00005015175)	ZNF541 (ENSGEVG00005015226) #18	ENSGEVG00005015256	NAPA (ENSGEVG00005015284) #19	KPTN (ENSGEVG00005015356) #20	SLC8A2 (ENSGEVG00005015381) #21	MEIS3 (ENSGEVG00005015459) #22	CATSPERG (ENSGEVG00005015530)	ENSGEVG00005015651	PSMD8 (ENSGEVG00005015680)	ENSGEVG00005015710	SPRED3 (ENSGEVG00005015743)	ENSGEVG00005015784	RASGRP4 (ENSGEVG00005015869)	RYR1 (ENSGEVG00005016095)	ENSGEVG00005016594	ENSGEVG00005016631	EIF3K (ENSGEVG00005016641)	ACTN4 (ENSGEVG00005016669)	ENSGEVG00005016741	LGALS4 (ENSGEVG00005016776)	ECH1 (ENSGEVG00005016832)
Abingdon island giant tortoise	MODERN SPECIES	2284										ZNF541 (ENSCABG00000003889) #18	ENSCABG00000003883	NAPA (ENSCABG00000003686) #19	KPTN (ENSCABG00000003618) #20	ENSCABG00000003616 #21	ENSCABG00000003614 #21	MEIS3 (ENSCABG00000003612) #22	CATSPERG (ENSCABG00000003611)	PSMD8 (ENSCABG00000003609)	ENSCABG00000003607	SPRED3 (ENSCABG00000003400)	ENSCABG00000003384	RASGRP4 (ENSCABG00000003362)	ENSCABG00000003353	ENSCABG00000003344
Chinese turtle	MODERN SPECIES	545																ENSPSIG00000016694 #22	CATSPERG (ENSPSIG00000016879)	PSMD8 (ENSPSIG00000005164)	RASGRP4 (ENSPSIG00000005465)
Anura	ANCESTRAL SPECIES	121	ENSGT00940000155747	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160281	ENSGT00940000161634 #13	ENSGT01090000260005.a.b.a.b.b	ENSGT00390000017267 #16	ENSGT00940000159256 #17	ENSGT00940000161901	ENSGT00940000159112.b	ENSGT00390000005826.a.a #19	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00390000014682	ENSGT00940000161445	ENSGT00440000037341.b.b	ENSGT00940000159883	ENSGT00940000155288.b	ENSGT00940000160308.ab	ENSGT00940000157973
Frog	MODERN SPECIES	8	tgfb1 (ENSXETG00000018738)	b9d2 (ENSXETG00000018749)	bckdha (ENSXETG00000018753)	exosc5 (ENSXETG00000018752)	dmac2 (ENSXETG00000018756)	prss16 (ENSXETG00000018761)	crx (ENSXETG00000018775) #13	ENSXETG00000038813	ENSXETG00000002781	nop53 (ENSXETG00000002782) #16	ehd2 (ENSXETG00000002783) #17	XB5844015 [provisional:capn2] (ENSXETG00000039899)	bicra (ENSXETG00000002787)	napa (ENSXETG00000002788) #19	slc8a2 (ENSXETG00000002790) #21	meis3 (ENSXETG00000002807) #22	psmd8 (ENSXETG00000002818)	ENSXETG00000042074	spred3 (ENSXETG00000034444)	fam98a (ENSXETG00000002820)	rasgrp4 (ENSXETG00000002821)	arhgap11a.2 (ENSXETG00000002822)	ryr1 (ENSXETG00000002823)	map4k1 (ENSXETG00000002836)	tspan15 (ENSXETG00000002840)	eif3k (ENSXETG00000024723)	clip3 (ENSXETG00000002780)	alkbh6 (ENSXETG00000002842)	ENSXETG00000035555	lgals4.1 (ENSXETG00000002843)	ech1 (ENSXETG00000000036)
Leishan spiny toad	MODERN SPECIES	238																ENSLLEG00000012132 #22	ENSLLEG00000012383
Coelacanth	MODERN SPECIES	239	ENSLACG00000022398	ENSLACG00000010727	med29 (ENSLACG00000011244)	PAF1 (ENSLACG00000011342)	socs9 (ENSLACG00000011486)	SAMD4B (ENSLACG00000011679)	gmfb (ENSLACG00000011952)	h3f3b.1 (ENSLACG00000012115)	ENSLACG00000012436	BICRA (ENSLACG00000012682)	ENSLACG00000013135 #18	ENSLACG00000013293	NAPA (ENSLACG00000013342) #19	KPTN (ENSLACG00000013473) #20	SLC8A2 (ENSLACG00000013880) #21	MEIS3 (ENSLACG00000014906) #22	ENSLACG00000015383	PSMD8 (ENSLACG00000015516)	ENSLACG00000015654	ENSLACG00000015732	zgc:162730 (ENSLACG00000015980)	zgc:172282 (ENSLACG00000016639)	LRFN1 (ENSLACG00000017241)	ENSLACG00000017690	ACTMAP (ENSLACG00000017716)	SNRPA (ENSLACG00000017723)	MIA (ENSLACG00000017735)	rhoub (ENSLACG00000017751)	RAB4B (ENSLACG00000017873)	EGLN2 (ENSLACG00000017899)	AXL (ENSLACG00000017950)
Actinopterygii	ANCESTRAL SPECIES	270																ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00390000002548 #20	ENSGT00940000160500	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000167259	ENSGT00390000017267 #16	ENSGT01090000260005.a.b.a.b.b	ENSGT00940000161595	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT01030000235120	ENSGT00940000153792.A	ENSGT00550000075103
Reedfish	MODERN SPECIES		ENSECRG00000003326	TMEM121B (ENSECRG00000003320)	ENSECRG00000003296	ENSECRG00000003276	ENSECRG00000003260	agk (ENSECRG00000003233)	dennd11 (ENSECRG00000003205)	wee2 (ENSECRG00000003186)	bcl2l13 (ENSECRG00000003176)	atp6v1e1a (ENSECRG00000003161)	ninj2 (ENSECRG00000003141)	ENSECRG00000003130	WNK1 (ENSECRG00000003091)	ENSECRG00000003073	rad52 (ENSECRG00000003052)	meis3 (ENSECRG00000003031) #22	ENSECRG00000003002	sirt2 (ENSECRG00000002580)	kptn (ENSECRG00000002518) #20	dmac2 (ENSECRG00000002492)	ENSECRG00000002465	otx5 (ENSECRG00000002456) #13	ENSECRG00000002445 #16	gjd1a (ENSECRG00000002436)	NFKBIB (ENSECRG00000002410)	psma6l (ENSECRG00000002375)	ENSECRG00000002364	ENSECRG00000002355	sars2 (ENSECRG00000002319)	si:dkey-260j18.2 (ENSECRG00000002299)	mrps12 (ENSECRG00000002291)
Neopterygii	ANCESTRAL SPECIES	77	ENSGT00940000160011	ENSGT00550000075007 #27	ENSGT00530000063950.a.b #25	ENSGT00900000142611	ENSGT00940000159792.C	ENSGT00940000166340	ENSGT00940000161313	ENSGT00940000166085	ENSGT00390000000417.a.a.b.b	ENSGT00390000007686.a	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000165978	ENSGT00940000159610	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00390000002548 #20	ENSGT00940000160500	ENSGT00390000017267 #16	ENSGT01090000260005.a.b.a.b.b	ENSGT00940000159120.e	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000180218	ENSGT00950000183181.B.b #36	ENSGT01100000263564.a #23	ENSGT01030000234517.F
Osteoglossocephalai	ANCESTRAL SPECIES	30	ENSGT00550000075007 #27	ENSGT01020000230625	ENSGT00530000063950.a.b #25	ENSGT00900000142611	ENSGT00940000159792.C	ENSGT00940000166340	ENSGT00940000166085	ENSGT00390000000417.a.a.b.b	ENSGT00390000007686.a	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000165978	ENSGT01030000234642.a.b.b.d.b.c.a	ENSGT00940000159610	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT00390000017267 #16	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00940000171204	ENSGT01100000263504.a.b.a.a	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000159120.e	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a
Clupeocephala	ANCESTRAL SPECIES	45	ENSGT00550000075007 #27	ENSGT01020000230625	ENSGT00530000063950.a.b #25	ENSGT00970000195665	ENSGT00390000000417.a.a.b.b	ENSGT00390000007686.a	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000165978	ENSGT00390000018436.b	ENSGT00940000158344.a.a ##21	ENSGT00910000144115.b	ENSGT01030000234642.a.b.b.d.b.c.a	ENSGT00940000159610	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957	ENSGT00940000165302
Euteleosteomorpha	ANCESTRAL SPECIES	41	ENSGT00550000074953	ENSGT00940000154922.a	ENSGT00940000165311.b	ENSGT00940000162755	ENSGT00500000045018	ENSGT00940000154987.i.b.a.b	ENSGT00940000155129.B	ENSGT00390000015299.a.b.b.b.c	ENSGT00940000155483.e.b	ENSGT00940000155423	ENSGT00390000006712	ENSGT00940000167342	ENSGT01030000234642.a.b.b.d.b.c.a	ENSGT00940000159610	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00990000206928	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000161634 #13	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a
Protacanthopterygii	ANCESTRAL SPECIES	7	ENSGT00530000063950.a.b #25	ENSGT00940000159792.C	ENSGT00940000166340	ENSGT00940000166085	ENSGT00390000007686.a	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000165978	ENSGT00940000159343	ENSGT00390000018436.b	ENSGT00940000158344.a.a ##21	ENSGT00910000144115.b.dc.b	ENSGT01030000234642.a.b.b.d.b.c.a	ENSGT00940000159610	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	75	ENSGT00530000063950.a.b.f #25	ENSGT00940000159792.C	ENSGT00940000166340.d	ENSGT00940000166085.g	ENSGT00390000007686.a.a	ENSGT00940000160308.a	ENSGT00390000009409.nb	ENSGT00940000155548.sb.a.b	ENSGT00940000155548.sb.a.a.a	ENSGT00390000018436.b	ENSGT00940000158344.a.a.d ##21	ENSGT00910000144115.b.dc.b.b	ENSGT01030000234642.a.b.b.d.b.c.a.c	ENSGT00940000159610.m	ENSGT00940000160281.p	ENSGT00940000161057.g #22	ENSGT00940000154866.A.e	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i.c	ENSGT00390000017267.c #16	ENSGT01100000263504.a.b.b.a.b.tb	ENSGT00940000164977.b.f	ENSGT00550000074807.c.e.a	ENSGT00390000001278.a.d	ENSGT00940000153792.A.i	ENSGT00940000156265.h	ENSGT00940000160533.b	ENSGT00530000064222.a.a	ENSGT00940000158965.o	ENSGT00940000160957.g
Salmoninae_a	ANCESTRAL SPECIES	19	ENSGT01020000230625.c	ENSGT00530000063950.a.b.f #25	ENSGT00940000159792.C	ENSGT00940000166340.d	ENSGT00940000166085.g	ENSGT00390000007686.a.a	ENSGT00940000160308.a	ENSGT00390000009409.nb	ENSGT00940000155548.sb.a.a.a	ENSGT00390000018436.b	ENSGT00940000158344.a.a.d ##21	ENSGT00910000144115.b.dc.b.b	ENSGT01030000234642.a.b.b.d.b.c.a.c	ENSGT00940000159610.m	ENSGT00940000160281.p	ENSGT00940000161057.g #22	ENSGT00940000154866.A.e	ENSGT00940000157514.a	ENSGT01090000260005.a.b.a.b.b.i.d	ENSGT00390000017267.d #16	ENSGT01100000263504.a.a.ob.a	ENSGT00940000164977.b.e	ENSGT00550000074807.c.e.b	ENSGT00390000001278.a.c	ENSGT00940000153792.A.j	ENSGT00940000156265.g	ENSGT00940000160533.a	ENSGT00530000064222.a.b	ENSGT00940000158965.p	ENSGT00940000160957.h	ENSGT00940000165302.c
Salmo	ANCESTRAL SPECIES	7	ENSGT01020000230625.c	ENSGT00530000063950.a.b.f #25	ENSGT00940000159792.C	ENSGT00940000166340.d	ENSGT00940000166085.g	ENSGT00390000007686.a.a	ENSGT00940000160308.a	ENSGT00390000009409.nb	ENSGT00940000155548.sb.a.a.a	ENSGT00390000018436.b	ENSGT00940000158344.a.a.d ##21	ENSGT00910000144115.b.dc.b.b	ENSGT01030000234642.a.b.b.d.b.c.a.c	ENSGT00940000159610.m	ENSGT00940000160281.p	ENSGT00940000161057.g #22	ENSGT00940000154866.A.e	ENSGT00940000157514.a	ENSGT01090000260005.a.b.a.b.b.i.d	ENSGT00390000017267.d #16	ENSGT01100000263504.a.a.ob.a	ENSGT00940000164977.b.e	ENSGT00550000074807.c.e.b	ENSGT00390000001278.a.c	ENSGT00940000153792.A.j	ENSGT00940000156265.g	ENSGT00940000160533.a	ENSGT00530000064222.a.b	ENSGT00940000158965.p	ENSGT00940000160957.h	ENSGT00940000165302.c
River trout	MODERN SPECIES	18	ccdc9 (ENSSTUG00000021348) #25	pak4 (ENSSTUG00000021331)	zgc:152863 (ENSSTUG00000021322)	hif1al (ENSSTUG00000020772)	DMWD (ENSSTUG00000020745)	ENSSTUG00000020526	eif3k (ENSSTUG00000020428)	actn4 (ENSSTUG00000019334)	ENSSTUG00000019263	ENSSTUG00000019254	slc8a2b (ENSSTUG00000019177) ##21	srsf7a (ENSSTUG00000019123)	hnrnpl2 (ENSSTUG00000018829)	ech1 (ENSSTUG00000018505)	ENSSTUG00000018423	meis3 (ENSSTUG00000018343) #22	ENSSTUG00000018331	sirt2 (ENSSTUG00000018168)	GJD2 (ENSSTUG00000018157)	nop53 (ENSSTUG00000018111) #16	ENSSTUG00000018105	ENSSTUG00000018091	ENSSTUG00000018083	psma6l (ENSSTUG00000018066)	ENSSTUG00000018059	si:dkey-260j18.2 (ENSSTUG00000018020)	slc5a2 (ENSSTUG00000017792)	fbxo46 (ENSSTUG00000017765)	ENSSTUG00000017761	coq8b (ENSSTUG00000016640)	numbl (ENSSTUG00000016566)
Atlantic salmon	MODERN SPECIES	12	ZC3H4 (ENSSSAG00000057401)	sae1 (ENSSSAG00000057386) #27	bbc3 (ENSSSAG00000057379)	CCDC9 (ENSSSAG00000057362) #25	ENSSSAG00000103318	hif1a (ENSSSAG00000057212)	ENSSSAG00000110379	ENSSSAG00000057098	ENSSSAG00000057129	actn4 (ENSSSAG00000056108)	ENSSSAG00000094654 ##21	ENSSSAG00000109272	ENSSSAG00000090587	ech1 (ENSSSAG00000082032)	ENSSSAG00000053130	meis3 (ENSSSAG00000105888) #22	rinl (ENSSSAG00000053056)	sirt2 (ENSSSAG00000052791)	ENSSSAG00000121281	nop53 (ENSSSAG00000052779) #16	h3f3a (ENSSSAG00000089325)	h3f3a (ENSSSAG00000052774)	ENSSSAG00000052766	ENSSSAG00000052764	ENSSSAG00000052749	ENSSSAG00000103032	sars2 (ENSSSAG00000120889)	si:dkey-260j18.2 (ENSSSAG00000084907)	slc5a2 (ENSSSAG00000052423)	fbxo46 (ENSSSAG00000115363)	coq8b (ENSSSAG00000048832)
Oncorhynchus	ANCESTRAL SPECIES	24	ENSGT01020000230625.c	ENSGT00530000063950.a.b.f #25	ENSGT00940000159792.C	ENSGT00940000166340.d	ENSGT00940000166085.g	ENSGT00390000007686.a.a	ENSGT00940000160308.a	ENSGT00390000009409.nb	ENSGT00940000155548.sb.a.a.a	ENSGT00390000018436.b	ENSGT00940000158344.a.a.d ##21	ENSGT00910000144115.b.dc.b.b	ENSGT01030000234642.a.b.b.d.b.c.a.c	ENSGT00940000159610.m	ENSGT00940000160281.p	ENSGT00940000161057.g #22	ENSGT00940000154866.A.e	ENSGT00940000157514.a	ENSGT01090000260005.a.b.a.b.b.i.d	ENSGT00390000017267.d #16	ENSGT00940000161634 #13	ENSGT00550000074807.c.e.b	ENSGT00390000001278.a.c	ENSGT00940000156265.g	ENSGT00940000160533.a	ENSGT00530000064222.a.b	ENSGT00940000158965.p	ENSGT00940000160957.h	ENSGT00940000165302.c	ENSGT00940000160692.e.a.b.a.a	ENSGT01030000234592.A.b.a.db.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	25	ENSGT01020000230625.c	ENSGT00530000063950.a.b.f #25	ENSGT00940000158656.b.a.b	ENSGT00940000166340.d	ENSGT00940000166085.g	ENSGT00390000007686.a.a	ENSGT00940000160308.a	ENSGT00390000009409.nb	ENSGT00940000155548.sb.a.a.a	ENSGT00390000018436.b	ENSGT00940000158344.a.a.d ##21	ENSGT00910000144115.b.dc.b.b	ENSGT01030000234642.a.b.b.d.b.c.a.c	ENSGT00940000159610.m	ENSGT00940000160281.p	ENSGT00940000161057.g #22	ENSGT00940000154866.A.e	ENSGT00940000157514.a	ENSGT01090000260005.a.b.a.b.b.i.d	ENSGT00390000017267.d #16	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000161634 #13	ENSGT00550000074807.c.e.b	ENSGT00390000001278.a.c	ENSGT00940000156265.g	ENSGT00940000160533.a	ENSGT00530000064222.a.b	ENSGT00940000158965.p	ENSGT00940000160957.h	ENSGT00940000165302.c	ENSGT00940000160692.e.a.b.a.a
Coho salmon	MODERN SPECIES	6	bbc3 (ENSOKIG00005037498)	CCDC9 (ENSOKIG00005037468) #25	ENSOKIG00005037426	ENSOKIG00005037411	ENSOKIG00005037249	DMWD (ENSOKIG00005037220)	ENSOKIG00005037172	ENSOKIG00005037148	ENSOKIG00005036011	ENSOKIG00005035881	ENSOKIG00005035554 ##21	ENSOKIG00005035517	hnrnpl2 (ENSOKIG00005034949)	ech1 (ENSOKIG00005034408)	ENSOKIG00005034362	meis3 (ENSOKIG00005034269) #22	ENSOKIG00005034253	sirt2 (ENSOKIG00005034106)	ENSOKIG00005034080	GJD2 (ENSOKIG00005034068)	nop53 (ENSOKIG00005034052) #16	ENSOKIG00005034030	ENSOKIG00005045489	ENSOKIG00005045484	psma6l (ENSOKIG00005045479)	ENSOKIG00005045438	si:dkey-260j18.2 (ENSOKIG00005045411)	slc5a2 (ENSOKIG00005044952)	fbxo46 (ENSOKIG00005044901)	coq8b (ENSOKIG00005043576)	numbl (ENSOKIG00005043420)
Chinook salmon	MODERN SPECIES	4	sae1 (ENSOTSG00005005993) #27	ccdc9 (ENSOTSG00005005992) #25	ENSOTSG00005005991	zgc:152863 (ENSOTSG00005005990)	hif1al (ENSOTSG00005005987)	DMWD (ENSOTSG00005005984)	ENSOTSG00005005980	eif3k (ENSOTSG00005005966)	actn4 (ENSOTSG00005005711)	ENSOTSG00005005707	slc8a2b (ENSOTSG00005005664) ##21	srsf7a (ENSOTSG00005005660)	hnrnpl2 (ENSOTSG00005005181)	ech1 (ENSOTSG00005002431)	ENSOTSG00005002392	meis3 (ENSOTSG00005002385) #22	ENSOTSG00005002375	sirt2 (ENSOTSG00005002294)	GJD2 (ENSOTSG00005002187)	nop53 (ENSOTSG00005001988) #16	ENSOTSG00005001679	otx5 (ENSOTSG00005046969) #13	psma6l (ENSOTSG00005046968)	ENSOTSG00005046967	si:dkey-260j18.2 (ENSOTSG00005046966)	slc5a2 (ENSOTSG00005046959)	fbxo46 (ENSOTSG00005046950)	coq8b (ENSOTSG00005046836)	ENSOTSG00005046830	numbl (ENSOTSG00005046829)	ENSOTSG00005046828
Rainbow trout	MODERN SPECIES	19	CCDC9 (ENSOMYG00000040254) #25	pak4 (ENSOMYG00000040226)	ENSOMYG00000063813	ENSOMYG00000050721	hif1al (ENSOMYG00000040205)	ENSOMYG00000039324	ENSOMYG00000039821	ENSOMYG00000039435	ENSOMYG00000038732	ENSOMYG00000038392	ENSOMYG00000038300 ##21	ENSOMYG00000038245	ENSOMYG00000037859	ech1 (ENSOMYG00000037638)	ENSOMYG00000037560	meis3 (ENSOMYG00000037543) #22	ENSOMYG00000037529	sirt2 (ENSOMYG00000036519)	ENSOMYG00000036374	nop53 (ENSOMYG00000036356) #16	ENSOMYG00000036338	ENSOMYG00000036317	ENSOMYG00000073239	ENSOMYG00000036301	ENSOMYG00000036270	si:dkey-260j18.2 (ENSOMYG00000036234)	slc5a2 (ENSOMYG00000036177)	fbxo46 (ENSOMYG00000036134)	coq8b (ENSOMYG00000033488)	ENSOMYG00000074289	numbl (ENSOMYG00000033107)
Huchen	MODERN SPECIES	261	pak4 (ENSHHUG00000046410)	ENSHHUG00000046424	zgc:152863 (ENSHHUG00000046426)	hif1al (ENSHHUG00000046435)	DMWD (ENSHHUG00000046513)	ENSHHUG00000046514	eif3k (ENSHHUG00000046571)	ENSHHUG00000046631	actn4 (ENSHHUG00000046636)	ENSHHUG00000046941	ENSHHUG00000046950 ##21	srsf7a (ENSHHUG00000046960)	hnrnpl2 (ENSHHUG00000046979)	ech1 (ENSHHUG00000047019)	ENSHHUG00000047027	meis3 (ENSHHUG00000047034) #22	ENSHHUG00000047075	sirt2 (ENSHHUG00000047080)	GJD2 (ENSHHUG00000047103)	nop53 (ENSHHUG00000047111) #16	ENSHHUG00000047124	ENSHHUG00000047174	ENSHHUG00000047224	ENSHHUG00000047230	ENSHHUG00000047252	sars2 (ENSHHUG00000047256)	si:dkey-260j18.2 (ENSHHUG00000047268)	slc5a2 (ENSHHUG00000047281)	fbxo46 (ENSHHUG00000047334)	coq8b (ENSHHUG00000047335)	numbl (ENSHHUG00000047344)
Salmoninae	ANCESTRAL SPECIES	1258															ENSGT00940000160281.o	ENSGT00940000161057.h #22	ENSGT00940000154866.A.f
Huchen	MODERN SPECIES	114								ENSHHUG00000029414	pid1 (ENSHHUG00000029418)	dner (ENSHHUG00000029421)	trip12 (ENSHHUG00000029431)	slc8a2b (ENSHHUG00000029510) ##21	srsf7a (ENSHHUG00000029557)	ENSHHUG00000029571	ENSHHUG00000029626	meis3 (ENSHHUG00000029638) #22	ENSHHUG00000029674	sirt2 (ENSHHUG00000029687)	dmac2 (ENSHHUG00000029701)	GJD2 (ENSHHUG00000029719)	nop53 (ENSHHUG00000029723) #16	ENSHHUG00000029740	ENSHHUG00000029912	ENSHHUG00000029945	psma6l (ENSHHUG00000029947)	ENSHHUG00000029974	sars2 (ENSHHUG00000029989)	si:dkey-260j18.2 (ENSHHUG00000030037)	slc5a2 (ENSHHUG00000020581)	fbxo46 (ENSHHUG00000020603)	coq8b (ENSHHUG00000020607)
Salmoninae_a	ANCESTRAL SPECIES	3	ENSGT01020000230625.d	ENSGT00530000063950.a.b.e #25	ENSGT00940000158656.b.a.a	ENSGT00940000166340.c	ENSGT00940000166085.h	ENSGT00390000007686.a.b	ENSGT00940000160308.b	ENSGT00390000009409.mb	ENSGT00940000165978	ENSGT00940000159343	ENSGT00940000158344.a.a.c ##21	ENSGT00910000144115.b.dc.b.a	ENSGT01030000234642.a.b.b.d.b.c.a.d	ENSGT00940000159610.n	ENSGT00940000160281.o	ENSGT00940000161057.h #22	ENSGT00940000154866.A.f	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i.c	ENSGT00390000017267.c #16	ENSGT01100000263504.a.b.b.a.b.tb	ENSGT00940000164977.b.f	ENSGT00550000074807.c.e.a	ENSGT00940000153792.A.i	ENSGT00940000156265.h	ENSGT00940000160533.b	ENSGT00530000064222.a.a	ENSGT00940000158965.o	ENSGT00940000160957.g	ENSGT00940000165302.d	ENSGT00940000160692.e.b
Salmo	ANCESTRAL SPECIES	22	ENSGT01020000230625.d	ENSGT00530000063950.a.b.e #25	ENSGT00940000158656.b.a.a	ENSGT00940000166340.c	ENSGT00940000166085.h	ENSGT00390000007686.a.b	ENSGT00940000160308.b	ENSGT00390000009409.mb	ENSGT00940000165978	ENSGT00940000159343	ENSGT00940000158344.a.a.c ##21	ENSGT00910000144115.b.dc.b.a	ENSGT01030000234642.a.b.b.d.b.c.a.d	ENSGT00940000159610.n	ENSGT00940000160281.o	ENSGT00940000161057.h #22	ENSGT00940000154866.A.f	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i.c	ENSGT00390000017267.c #16	ENSGT01100000263504.a.b.a.a	ENSGT01100000263504.a.a.ob.b	ENSGT00940000164977.b.f	ENSGT00550000074807.c.e.a	ENSGT00940000153792.A.i	ENSGT00940000156265.h	ENSGT00940000160533.b	ENSGT00530000064222.a.a	ENSGT00940000158965.o	ENSGT00940000160957.g	ENSGT00940000165302.d
Atlantic salmon	MODERN SPECIES	28	bbc3 (ENSSSAG00000064715)	CCDC9 (ENSSSAG00000064699) #25	ENSSSAG00000064684	ENSSSAG00000064677	ENSSSAG00000064581	ENSSSAG00000106601	ENSSSAG00000064553	ENSSSAG00000064454	ENSSSAG00000113410	ENSSSAG00000048510	ENSSSAG00000085876 ##21	ENSSSAG00000046230	ENSSSAG00000098949	ech1 (ENSSSAG00000044971)	ENSSSAG00000044874	meis3 (ENSSSAG00000109909) #22	ENSSSAG00000044807	dmac2 (ENSSSAG00000044797)	ENSSSAG00000044772	nop53 (ENSSSAG00000044707) #16	ENSSSAG00000044665	h3f3a (ENSSSAG00000095049)	ENSSSAG00000103523	ENSSSAG00000121667	ENSSSAG00000044595	si:dkey-260j18.2 (ENSSSAG00000044497)	ENSSSAG00000042477	fbxo46 (ENSSSAG00000042440)	coq8b (ENSSSAG00000042284)	numbl (ENSSSAG00000042218)	ENSSSAG00000048744
River trout	MODERN SPECIES	4	ENSSTUG00000039755	ccdc9 (ENSSTUG00000039733) #25	ENSSTUG00000039724	zgc:152863 (ENSSTUG00000039713)	hif1al (ENSSTUG00000039467)	DMWD (ENSSTUG00000039460)	ENSSTUG00000039449	eif3k (ENSSTUG00000039423)	zgc:85932 (ENSSTUG00000039404)	ACTN4 (ENSSTUG00000038487)	SLC8A2 (ENSSTUG00000038379) ##21	srsf7a (ENSSTUG00000038365)	ENSSTUG00000038280	ech1 (ENSSTUG00000038126)	ENSSTUG00000038094	meis3 (ENSSTUG00000037976) #22	dmac2 (ENSSTUG00000037953)	GJD2 (ENSSTUG00000037943)	nop53 (ENSSTUG00000037882) #16	ENSSTUG00000037875	ENSSTUG00000037854	ENSSTUG00000037832	psma6l (ENSSTUG00000037809)	sars2 (ENSSTUG00000037529)	si:dkey-260j18.2 (ENSSTUG00000037498)	ENSSTUG00000037482	fbxo46 (ENSSTUG00000037476)	coq8b (ENSSTUG00000036786)	numbl (ENSSTUG00000036741)	ENSSTUG00000036656	dpf1 (ENSSTUG00000036601)
Oncorhynchus	ANCESTRAL SPECIES	14	ENSGT01020000230625.d	ENSGT00530000063950.a.b.e #25	ENSGT00940000158656.b.a.a	ENSGT00940000166340.c	ENSGT00940000166085.h	ENSGT00390000007686.a.b	ENSGT00940000160308.b	ENSGT00390000009409.mb	ENSGT00940000165978	ENSGT00940000159343	ENSGT00940000155548.sb.a.a.b	ENSGT00940000158344.a.a.c ##21	ENSGT01030000234642.a.b.b.d.b.c.a.d	ENSGT00940000159610.n	ENSGT00940000160281.o	ENSGT00940000161057.h #22	ENSGT00940000162381	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i.c	ENSGT00390000017267.c #16	ENSGT01100000263504.a.b.b.a.b.tb	ENSGT00510000049652	ENSGT00940000164977.b.f	ENSGT00550000074807.c.e.a	ENSGT00390000001278.a.d	ENSGT00940000153792.A.i	ENSGT00940000156265.h	ENSGT00940000160533.b	ENSGT00530000064222.a.a	ENSGT00940000158965.o	ENSGT00940000160957.g
Rainbow trout	MODERN SPECIES	16	ENSOMYG00000037614 #25	ENSOMYG00000037599	ENSOMYG00000037582	ENSOMYG00000037394	if3c (ENSOMYG00000037187)	ENSOMYG00000037156	ENSOMYG00000037144	ENSOMYG00000035927	ENSOMYG00000055860	ENSOMYG00000035680 ##21	ENSOMYG00000035671	ENSOMYG00000035670	ENSOMYG00000034597	ech1 (ENSOMYG00000034375)	ENSOMYG00000034325	meis3 (ENSOMYG00000034281) #22	ENSOMYG00000034254	dmac2 (ENSOMYG00000034263)	ENSOMYG00000034248	nop53 (ENSOMYG00000034220) #16	ENSOMYG00000034207	ENSOMYG00000034196	ENSOMYG00000034177	ENSOMYG00000057351	ENSOMYG00000076537	ENSOMYG00000034147	sars2 (ENSOMYG00000033204)	si:dkey-260j18.2 (ENSOMYG00000033011)	slc5a2 (ENSOMYG00000076608)	fbxo46 (ENSOMYG00000032973)	ENSOMYG00000065784
Oncorhynchus_a	ANCESTRAL SPECIES	41	ENSGT00550000075007.z #27	ENSGT01020000230625.d	ENSGT00530000063950.a.b.e #25	ENSGT00940000158656.b.a.a	ENSGT00940000166340.c	ENSGT00940000166085.h	ENSGT00390000007686.a.b	ENSGT00940000160308.b	ENSGT00390000009409.mb	ENSGT00940000165978	ENSGT00940000155548.sb.a.a.b	ENSGT00940000158344.a.a.c ##21	ENSGT01030000234642.a.b.b.d.b.c.a.d	ENSGT00940000159610.n	ENSGT00940000160281.o	ENSGT00940000161057.h #22	ENSGT00940000162381	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i.c	ENSGT00390000017267.c #16	ENSGT01100000263504.a.b.b.a.b.sb.b	ENSGT00940000164977.b.f	ENSGT00550000074807.c.e.a	ENSGT00940000153792.A.i	ENSGT00940000156265.h	ENSGT00940000160533.b	ENSGT00530000064222.a.a	ENSGT00940000158965.o	ENSGT00940000160957.g	ENSGT00940000165302.d	ENSGT00940000160692.e.a.b.a.b
Chinook salmon	MODERN SPECIES	5	bbc3 (ENSOTSG00005011877)	ccdc9 (ENSOTSG00005011875) #25	ENSOTSG00005011872	zgc:152863 (ENSOTSG00005011870)	hif1al (ENSOTSG00005011869)	DMWD (ENSOTSG00005011867)	ENSOTSG00005011866	MAP4K1 (ENSOTSG00005011864)	eif3k (ENSOTSG00005011550)	zgc:85932 (ENSOTSG00005011549)	actn4 (ENSOTSG00005003869)	slc8a2b (ENSOTSG00005003770) ##21	ENSOTSG00005002311	ech1 (ENSOTSG00005002212)	ENSOTSG00005002163	meis3 (ENSOTSG00005002153) #22	ENSOTSG00005002147	dmac2 (ENSOTSG00005002140)	GJD2 (ENSOTSG00005002138)	nop53 (ENSOTSG00005001994) #16	ENSOTSG00005001672	ENSOTSG00005024648	ENSOTSG00005024647	psma6l (ENSOTSG00005024645)	si:dkey-260j18.2 (ENSOTSG00005024643)	slc5a2 (ENSOTSG00005024639)	sars2 (ENSOTSG00005023143)	coq8b (ENSOTSG00005021026)	numbl (ENSOTSG00005021010)	ENSOTSG00005021009	dpf1 (ENSOTSG00005020973)
Coho salmon	MODERN SPECIES	9	ENSOKIG00005016808	ENSOKIG00005016819	zgc:152863 (ENSOKIG00005016841)	hif1al (ENSOKIG00005016891)	DMWD (ENSOKIG00005017189)	ENSOKIG00005017196	ENSOKIG00005017217	eif3k (ENSOKIG00005017257)	zgc:85932 (ENSOKIG00005017441)	actn4 (ENSOKIG00005017796)	slc8a2b (ENSOKIG00005023840) ##21	ENSOKIG00005023886	ENSOKIG00005024023	ech1 (ENSOKIG00005024615)	ENSOKIG00005024631	meis3 (ENSOKIG00005024671) #22	ENSOKIG00005024777	dmac2 (ENSOKIG00005024789)	GJD2 (ENSOKIG00005024800)	nop53 (ENSOKIG00005024810) #16	ENSOKIG00005024849	ENSOKIG00005024882	ENSOKIG00005024896	ENSOKIG00005024906	ENSOKIG00005024920	sars2 (ENSOKIG00005024954)	si:dkey-260j18.2 (ENSOKIG00005025283)	slc5a2 (ENSOKIG00005025366)	fbxo46 (ENSOKIG00005025446)	coq8b (ENSOKIG00005025560)	numbl (ENSOKIG00005026584)
Northern pike	MODERN SPECIES		urb1 (ENSELUG00000020516)	ENSELUG00000020570	scaf4b (ENSELUG00000020608)	TIAM1 (ENSELUG00000020727)	cldn8.2 (ENSELUG00000020769)	CLDN8 (ENSELUG00000020761)	cldn8.3 (ENSELUG00000020775)	ENSELUG00000020793	ppm1da (ENSELUG00000020823)	appbp2 (ENSELUG00000001435)	ENSELUG00000020938	ENSELUG00000028143	ENSELUG00000032242	ENSELUG00000019947	ENSELUG00000019928	meis3 (ENSELUG00000019875) #22	ENSELUG00000019851	sirt2 (ENSELUG00000019819)	dmac2 (ENSELUG00000019749)	GJD2 (ENSELUG00000019735)	nop53 (ENSELUG00000001525) #16	ENSELUG00000019682	ENSELUG00000019672	ENSELUG00000019655	ENSELUG00000019641	sars2 (ENSELUG00000019620)	si:dkey-260j18.2 (ENSELUG00000019557)	slc5a2 (ENSELUG00000019527)	fbxo46 (ENSELUG00000029737)	coq8b (ENSELUG00000019469)	numbl (ENSELUG00000019444)
Acanthomorphata	ANCESTRAL SPECIES	37															ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00990000206928	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965
Euacanthomorphacea	ANCESTRAL SPECIES	8	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b	ENSGT00940000160165.a	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00990000206928	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.b.a.b	ENSGT01030000235280	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a
Pinecone sodierfish	MODERN SPECIES	4	spsb4a (ENSMMDG00005003678)	CLSTN2 (ENSMMDG00005003696)	lpar5b (ENSMMDG00005003739)	rbp2a (ENSMMDG00005003743)	COPB2 (ENSMMDG00005003752)	mrps22 (ENSMMDG00005003761)	PIK3CB (ENSMMDG00005003879)	ENSMMDG00005007371	her13 (ENSMMDG00005008258)	her8.2 (ENSMMDG00005008260)	ENSMMDG00005008264	ITM2C (ENSMMDG00005008270)	lpar5b (ENSMMDG00005008271)	ENSMMDG00005008273	ENSMMDG00005008275	meis3 (ENSMMDG00005008278) #22	sirt2 (ENSMMDG00005008312)	dmac2 (ENSMMDG00005009450)	GJD2 (ENSMMDG00005009454)	nop53 (ENSMMDG00005009458) #16	ENSMMDG00005009466	ENSMMDG00005009470	psma6l (ENSMMDG00005009473)	ENSMMDG00005009490	sars2 (ENSMMDG00005009634)	si:dkey-260j18.2 (ENSMMDG00005009893)	slc5a2 (ENSMMDG00005009901)	fbxo46 (ENSMMDG00005009906)	coq8b (ENSMMDG00005009928)	numbl (ENSMMDG00005010018)	ENSMMDG00005010041
Percomorphaceae	ANCESTRAL SPECIES	8	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b	ENSGT00940000160165.a	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.b.a.b	ENSGT01030000235280	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965
Tiger tail seahorse	MODERN SPECIES	517	pax3b (ENSHCOG00000016573)	epha4a (ENSHCOG00000016610)	pxylp1 (ENSHCOG00000016625)	SLC25A36 (ENSHCOG00000016644)	spsb4a (ENSHCOG00000016659)	CLSTN2 (ENSHCOG00000016690)	rbp2a (ENSHCOG00000016710)	mrps22 (ENSHCOG00000016713)	foxl2b (ENSHCOG00000016718)	PIK3CB (ENSHCOG00000016759)	PER2 (ENSHCOG00000016767)	her13 (ENSHCOG00000016789)	her8.2 (ENSHCOG00000016804)	ENSHCOG00000016829	ITM2C (ENSHCOG00000016875)	meis3 (ENSHCOG00000016923) #22	ENSHCOG00000016940	sirt2 (ENSHCOG00000016976)	dmac2 (ENSHCOG00000017106)	GJD2 (ENSHCOG00000017119)	nop53 (ENSHCOG00000017133) #16	ENSHCOG00000017138	H3-3B (ENSHCOG00000017147)	ENSHCOG00000017163	ENSHCOG00000017249	sars2 (ENSHCOG00000017362)	si:dkey-260j18.2 (ENSHCOG00000017384)	fbxo46 (ENSHCOG00000017386)	coq8b (ENSHCOG00000017402)	ENSHCOG00000017433	aplp2 (ENSHCOG00000017476)
Percomorphaceae_B	ANCESTRAL SPECIES	13	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263514.A.f.x.a.b.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Ovalentaria	ANCESTRAL SPECIES	8	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263514.A.f.x.a.b.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Atherinomorphae	ANCESTRAL SPECIES	15	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.a.ib	ENSGT00940000164977.b.a.b	ENSGT00940000164977.b.a.a	ENSGT00550000074807.c	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Oryzias	DUPLICATION
Oryzias	ANCESTRAL SPECIES																	ENSGT00940000161057.i #22
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00940000161057.i #22
Chinese medaka	MODERN SPECIES	4746																ENSOSIG00000002272 #22
Oryzias	ANCESTRAL SPECIES	8	ENSGT00950000182902.b.b.b	ENSGT00940000156628.c	ENSGT01080000257336.b.e.b.a.a.d	ENSGT00390000011863.d.a.a	ENSGT00550000074907	ENSGT00390000016836.b	ENSGT00390000015165	ENSGT00940000161203	ENSGT00940000155076.b.a.b	ENSGT01030000234927	ENSGT00940000159315	ENSGT00390000003413	ENSGT00390000002625	ENSGT00950000183115.a.a.a	ENSGT00940000160281	ENSGT00940000161057.j #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.a.ib	ENSGT00940000164977.b.a.b	ENSGT01100000263504.a.b.a.b.a.a	ENSGT00940000154313.c.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.b.a.a	ENSGT00550000074807.c	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533
Oryzias_b	ANCESTRAL SPECIES	14	ENSGT00950000182902.b.b.b	ENSGT00940000156628.c	ENSGT01080000257336.b.e.b.a.a.d	ENSGT00390000011863.d.a.a	ENSGT00550000074907	ENSGT00390000016836.b	ENSGT00390000015165	ENSGT00940000161203	ENSGT00940000155076.b.a.b	ENSGT01030000234927	ENSGT00940000159315	ENSGT00390000003413	ENSGT00390000002625	ENSGT00950000183115.a.a.a	ENSGT00940000160281	ENSGT00940000161057.j #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.a.ib	ENSGT00940000164977.b.a.a	ENSGT00550000074807.c	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957	ENSGT00940000165302
Indian medaka	MODERN SPECIES	12	ENSOMEG00000017382	PDE3A (ENSOMEG00000017450)	slco1c1 (ENSOMEG00000017506)	bcap29 (ENSOMEG00000017538)	dus4l (ENSOMEG00000017582)	rflnb (ENSOMEG00000017599)	vps53 (ENSOMEG00000017681)	zgc:172282 (ENSOMEG00000017727)	zgc:162730 (ENSOMEG00000017752)	ENSOMEG00000017764	SGSM2 (ENSOMEG00000000457)	ift20 (ENSOMEG00000017976)	lyrm9 (ENSOMEG00000017962)	ITM2C (ENSOMEG00000018006)	ENSOMEG00000018030	meis3 (ENSOMEG00000018062) #22	ENSOMEG00000018120	sirt2 (ENSOMEG00000018164)	dmac2 (ENSOMEG00000018198)	GJD2 (ENSOMEG00000018221)	nop53 (ENSOMEG00000018244) #16	ENSOMEG00000018259	ENSOMEG00000018292	ENSOMEG00000018323	psma6l (ENSOMEG00000018353)	sars2 (ENSOMEG00000018375)	si:dkey-260j18.2 (ENSOMEG00000018383)	slc5a2 (ENSOMEG00000018418)	fbxo46 (ENSOMEG00000018443)	coq8b (ENSOMEG00000018475)	numbl (ENSOMEG00000018554)
Javanese ricefish	MODERN SPECIES	4	ENSOJAG00000005123	PDE3A (ENSOJAG00000005114)	slco1c1 (ENSOJAG00000003814)	bcap29 (ENSOJAG00000003460)	dus4l (ENSOJAG00000003440)	rflnb (ENSOJAG00000003432)	vps53 (ENSOJAG00000003265)	zgc:172282 (ENSOJAG00000003214)	zgc:162730 (ENSOJAG00000003205)	ENSOJAG00000003196	SGSM2 (ENSOJAG00000002240)	ift20 (ENSOJAG00000001951)	lyrm9 (ENSOJAG00000001946)	ITM2C (ENSOJAG00000001932)	ENSOJAG00000001897	meis3 (ENSOJAG00000001762) #22	ENSOJAG00000001694	sirt2 (ENSOJAG00000001657)	dmac2 (ENSOJAG00000001629)	GJD2 (ENSOJAG00000023966)	nop53 (ENSOJAG00000023961) #16	ENSOJAG00000023958	ENSOJAG00000023954	psma6l (ENSOJAG00000023950)	sars2 (ENSOJAG00000023924)	si:dkey-260j18.2 (ENSOJAG00000023908)	slc5a2 (ENSOJAG00000023827)	fbxo46 (ENSOJAG00000023769)	coq8b (ENSOJAG00000023751)	numbl (ENSOJAG00000023746)	ENSOJAG00000023739
Oryzias_a	ANCESTRAL SPECIES	8	ENSGT00950000182902.b.b.b	ENSGT00940000156628.c	ENSGT01080000257336.b.e.b.a.a.d	ENSGT00390000011863.d.a.a	ENSGT00550000074907	ENSGT00390000016836.b	ENSGT00390000015165	ENSGT00940000161203	ENSGT00940000155076.b.a.b	ENSGT01030000234927	ENSGT00940000159315	ENSGT00390000003413	ENSGT00390000002625	ENSGT00950000183115.a.a.a	ENSGT00940000160281	ENSGT00940000161057.j #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.b.a.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.b.a.a	ENSGT00550000074807.c	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Japanese Medaka HdrR	MODERN SPECIES	4	ENSORLG00000030040	ENSORLG00000008246	slco1c1 (ENSORLG00000008279)	bcap29 (ENSORLG00000008295)	dus4l (ENSORLG00000008306)	rflnb (ENSORLG00000008316)	vps53 (ENSORLG00000008353)	zgc:172282 (ENSORLG00000008364)	zgc:162730 (ENSORLG00000027149)	ENSORLG00000008381	SGSM2 (ENSORLG00000008415)	lyrm9 (ENSORLG00000024775)	ift20 (ENSORLG00000008436)	ITM2C (ENSORLG00000008477)	ENSORLG00000008506	meis3 (ENSORLG00000008534) #22	ENSORLG00000027773	ENSORLG00000008542	sirt2 (ENSORLG00000008571)	dmac2 (ENSORLG00000008587)	ENSORLG00000008596	nop53 (ENSORLG00000008659) #16	ENSORLG00000028044	ENSORLG00000024385	ENSORLG00000008681	psma6l (ENSORLG00000008691)	sars2 (ENSORLG00000008723)	si:dkey-260j18.2 (ENSORLG00000023288)	slc5a2 (ENSORLG00000008769)	fbxo46 (ENSORLG00000027456)	coq8b (ENSORLG00000008795)
Chinese medaka	MODERN SPECIES	2353																meis3 (ENSOSIG00000012790) #22
Cyprinodontiformes	ANCESTRAL SPECIES	12	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263514.A.f.x.a.b.b	ENSGT00940000164977.b.a.b	ENSGT00550000074807.c	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957	ENSGT00940000165302
Cyprinodontoidei	ANCESTRAL SPECIES	9	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000162075	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT00940000164977.b.a.b	ENSGT00550000074807.c	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957	ENSGT00940000165302	ENSGT00940000160692
Poeciliinae	ANCESTRAL SPECIES	14	ENSGT00940000161370	ENSGT00940000153571.a	ENSGT00390000014591	ENSGT00920000149180.b	ENSGT00940000154495.a.a	ENSGT00940000165285	ENSGT00390000012296	ENSGT01010000222313.A.b.b.b.b	ENSGT00940000174362.A	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.b.a.a	ENSGT01100000263504.a.b.b.a.b	ENSGT01100000263504.a.a	ENSGT00940000164977.b.a.b	ENSGT00550000074807.c	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965
Poecilia	ANCESTRAL SPECIES	2	ENSGT00940000153571.a	ENSGT00390000014591	ENSGT00920000149180.b	ENSGT00940000154495.a.a	ENSGT00940000165285	ENSGT00390000012296	ENSGT01010000222313.A.b.b.b.b	ENSGT00940000174362.A	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT01100000263473.a.b.h.b.d	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.b.a.a	ENSGT01100000263504.a.b.b.a.b	ENSGT01100000263504.a.a	ENSGT00940000164977.b.a.b	ENSGT00550000074807.c	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965
NAME_6	ANCESTRAL SPECIES	48	ENSGT00940000153571.a	ENSGT00390000014591	ENSGT00920000149180.b	ENSGT00940000154495.a.a	ENSGT00940000165285	ENSGT00390000012296	ENSGT01010000222313.A.b.b.b.b	ENSGT00940000174362.A	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT01100000263473.a.b.h.b.d	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.a.ib	ENSGT01100000263504.a.b.a.b.a.a	ENSGT01100000263504.a.b.b.a.b	ENSGT01100000263504.a.a	ENSGT00940000164977.b.a.b	ENSGT00550000074807.c	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a
Amazon molly	MODERN SPECIES	707								ENSPFOG00000004126	her13 (ENSPFOG00000004031)	her8.2 (ENSPFOG00000004012)	ENSPFOG00000003993	ENSPFOG00000003922	ITM2C (ENSPFOG00000003845)	lpar5b (ENSPFOG00000020324)	ENSPFOG00000003563	meis3 (ENSPFOG00000003353) #22	ENSPFOG00000003325	sirt2 (ENSPFOG00000003110)	dmac2 (ENSPFOG00000003055)	GJD2 (ENSPFOG00000020323)	nop53 (ENSPFOG00000002839) #16	ENSPFOG00000002790	ENSPFOG00000002772	ENSPFOG00000002767	ENSPFOG00000002731	psma6l (ENSPFOG00000002628)	ENSPFOG00000002620	sars2 (ENSPFOG00000002338)	si:dkey-260j18.2 (ENSPFOG00000002301)	slc5a2 (ENSPFOG00000002096)	fbxo46 (ENSPFOG00000002063)
Sailfin molly	MODERN SPECIES	72	ENSPLAG00000006245	smtnl (ENSPLAG00000006284)	ENSPLAG00000006297	ENSPLAG00000006309	dhrs13b.2 (ENSPLAG00000006315)	gemin4 (ENSPLAG00000006323)	TLCD3A (ENSPLAG00000006329)	ENSPLAG00000006336	her13 (ENSPLAG00000006356)	her8.2 (ENSPLAG00000006380)	ENSPLAG00000006392	ENSPLAG00000006422	ITM2C (ENSPLAG00000006447)	lpar5b (ENSPLAG00000006451)	ENSPLAG00000006503	meis3 (ENSPLAG00000006532) #22	sirt2 (ENSPLAG00000006603)	dmac2 (ENSPLAG00000006626)	GJD2 (ENSPLAG00000006637)	nop53 (ENSPLAG00000006675) #16	ENSPLAG00000006687	ENSPLAG00000006700	ENSPLAG00000006721	psma6l (ENSPLAG00000006748)	sars2 (ENSPLAG00000006817)	si:dkey-260j18.2 (ENSPLAG00000006834)	slc5a2 (ENSPLAG00000006886)	fbxo46 (ENSPLAG00000006889)
Guppy	MODERN SPECIES	443	smtnl (ENSPREG00000009218)	ENSPREG00000009203	dhrs13b.2 (ENSPREG00000009195)	ENSPREG00000009182	gemin4 (ENSPREG00000009166)	ENSPREG00000009121	ENSPREG00000009116	ENSPREG00000009074	her13 (ENSPREG00000009056)	her8.2 (ENSPREG00000009052)	ENSPREG00000009042	ENSPREG00000009004	ITM2C (ENSPREG00000008957)	lpar5b (ENSPREG00000008941)	ENSPREG00000008927	meis3 (ENSPREG00000008858) #22	ENSPREG00000008837	sirt2 (ENSPREG00000008808)	dmac2 (ENSPREG00000008774)	GJD2 (ENSPREG00000008751)	nop53 (ENSPREG00000008711) #16	ENSPREG00000008418	ENSPREG00000008234	ENSPREG00000008212	psma6l (ENSPREG00000008188)	sars2 (ENSPREG00000008164)	si:dkey-260j18.2 (ENSPREG00000008151)	slc5a2 (ENSPREG00000008113)	fbxo46 (ENSPREG00000008095)	coq8b (ENSPREG00000008063)	numbl (ENSPREG00000008016)
Platyfish	MODERN SPECIES	9	ENSXMAG00000025248	dhrs13b.2 (ENSXMAG00000002483)	ENSXMAG00000024459	gemin4 (ENSXMAG00000002485)	TLCD3A (ENSXMAG00000024947)	ENSXMAG00000022018	ENSXMAG00000021840	ENSXMAG00000029915	her13 (ENSXMAG00000002499)	her8.2 (ENSXMAG00000002506)	ENSXMAG00000026453	ENSXMAG00000002508	ITM2C (ENSXMAG00000002524)	lpar5b (ENSXMAG00000002536)	ENSXMAG00000002537	meis3 (ENSXMAG00000002549) #22	ENSXMAG00000002565	sirt2 (ENSXMAG00000020824)	dmac2 (ENSXMAG00000022651)	GJD2 (ENSXMAG00000002585)	nop53 (ENSXMAG00000002589) #16	ENSXMAG00000002599	psma6l (ENSXMAG00000002605)	sars2 (ENSXMAG00000002613)	si:dkey-260j18.2 (ENSXMAG00000021234)	slc5a2 (ENSXMAG00000002639)	fbxo46 (ENSXMAG00000027823)	coq8b (ENSXMAG00000002671)	numbl (ENSXMAG00000024225)	ENSXMAG00000002697	dpf1 (ENSXMAG00000002710)
NAME_4	ANCESTRAL SPECIES	113												ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000161634 #13	ENSGT00550000074807.c	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957	ENSGT00940000165302
Sheepshead minnow	MODERN SPECIES	1041										NQO2 (ENSCVAG00000011129)	ENSCVAG00000011109	ENSCVAG00000011002	ITM2C (ENSCVAG00000010973)	lpar5b (ENSCVAG00000010967)	ENSCVAG00000010955	meis3 (ENSCVAG00000000904) #22	ENSCVAG00000010851	sirt2 (ENSCVAG00000010842)	dmac2 (ENSCVAG00000010798)	GJD2 (ENSCVAG00000010785)
Mummichog	MODERN SPECIES	779											ENSFHEG00000013332	ITM2C (ENSFHEG00000013290)	lpar5b (ENSFHEG00000013253)	ENSFHEG00000013250	ENSFHEG00000013233	meis3 (ENSFHEG00000013223) #22	ENSFHEG00000013199	sirt2 (ENSFHEG00000013188)	dmac2 (ENSFHEG00000013178)
Aplocheiloidei	ANCESTRAL SPECIES	242											ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500
Turquoise killifish	MODERN SPECIES	571																meis3 (ENSNFUG00015019788) #22	ENSNFUG00015019780
Mangrove rivulus	MODERN SPECIES	585											her8.2 (ENSKMAG00000004836)	ENSKMAG00000004787	ITM2C (ENSKMAG00000004741)	lpar5b (ENSKMAG00000004720)	ENSKMAG00000004701	meis3 (ENSKMAG00000004669) #22	ENSKMAG00000004654	sirt2 (ENSKMAG00000004569)	dmac2 (ENSKMAG00000004522)
Ovalentaria_B	ANCESTRAL SPECIES	11	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Pomacentridae	ANCESTRAL SPECIES	5	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Pomacentridae_A	ANCESTRAL SPECIES	4	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Amphiprion	ANCESTRAL SPECIES	6	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d.c	ENSGT01040000240444.A.a.a.b	ENSGT00950000183136.b.b.d.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Clown anemonefish	MODERN SPECIES	1529									ENSAOCG00000008868	ENSAOCG00000008852	ITM2C (ENSAOCG00000000521)	lpar5b (ENSAOCG00000008805)	lpar5b (ENSAOCG00000008793)	ENSAOCG00000000513	ENSAOCG00000008767	meis3 (ENSAOCG00000008755) #22
Orange clownfish	MODERN SPECIES	23	mrps22 (ENSAPEG00000000548)	PIK3CB (ENSAPEG00000000351)	PER2 (ENSAPEG00000000330)	her13 (ENSAPEG00000024634)	her8.2 (ENSAPEG00000024633)	ENSAPEG00000024631	ENSAPEG00000024629	ENSAPEG00000024627	ENSAPEG00000024624	ENSAPEG00000024615	ITM2C (ENSAPEG00000024612)	lpar5b (ENSAPEG00000024607)	ENSAPEG00000024604	ENSAPEG00000024601	ENSAPEG00000024599	meis3 (ENSAPEG00000024596) #22	ENSAPEG00000024591	selenou1b (ENSAPEG00000024587)	sirt2 (ENSAPEG00000024575)	dmac2 (ENSAPEG00000024572)	GJD2 (ENSAPEG00000024568)	nop53 (ENSAPEG00000024564) #16	ENSAPEG00000024555	H3-3A (ENSAPEG00000024548)	ENSAPEG00000024544	psma6l (ENSAPEG00000024531)	ENSAPEG00000024523	sars2 (ENSAPEG00000024501)	si:dkey-260j18.2 (ENSAPEG00000024487)	slc5a2 (ENSAPEG00000024478)	fbxo46 (ENSAPEG00000024474)
Spiny chromis	MODERN SPECIES	266													lpar5b (ENSAPOG00000006207)	ENSAPOG00000006229	ENSAPOG00000006247	meis3 (ENSAPOG00000006268) #22	ENSAPOG00000006278	sirt2 (ENSAPOG00000006381)	dmac2 (ENSAPOG00000006401)	GJD2 (ENSAPOG00000000702)	nop53 (ENSAPOG00000006446) #16	ENSAPOG00000006469	ENSAPOG00000006479	psma6l (ENSAPOG00000006505)	ENSAPOG00000006543	sars2 (ENSAPOG00000006562)	si:dkey-260j18.2 (ENSAPOG00000006600)	slc5a2 (ENSAPOG00000000180)	fbxo46 (ENSAPOG00000006679)	coq8b (ENSAPOG00000006701)	numbl (ENSAPOG00000006783)
Bicolor damselfish	MODERN SPECIES	2270											ENSSPAG00000003924	ITM2C (ENSSPAG00000003958)	lpar5b (ENSSPAG00000003980)	ENSSPAG00000003992	ENSSPAG00000004002	meis3 (ENSSPAG00000004029) #22
Cichlidae	ANCESTRAL SPECIES	33	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d.a.a.b	ENSGT00950000183136.b.b.d.b	ENSGT00950000183136.b.b.d.a.a.a	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.a	ENSGT00510000049652	ENSGT01100000263504.a.a	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	22	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d.a.a.a	ENSGT00950000183136.b.b.d.a.a.b.b	ENSGT00950000183136.b.b.d.a.a.b.a	ENSGT00950000183136.b.b.d.b	ENSGT00950000183136.b.b.d.a.b	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	25	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d.a.a.a	ENSGT00950000183136.b.b.d.a.a.b.b	ENSGT00950000183136.b.b.d.a.a.b.a	ENSGT00950000183136.b.b.d.b	ENSGT00950000183136.b.b.d.a.b	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.a	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Lyretail cichlid	MODERN SPECIES	367	SLC25A36 (ENSNBRG00000002942)	CLSTN2 (ENSNBRG00000002891)	lpar5b (ENSNBRG00000002874)	rbp2a (ENSNBRG00000002854)	COPB2 (ENSNBRG00000002788)	mrps22 (ENSNBRG00000002593)	PIK3CB (ENSNBRG00000002386)	PER2 (ENSNBRG00000002361)	her13 (ENSNBRG00000002345)	her8.2 (ENSNBRG00000002319)	ENSNBRG00000002297	ITM2C (ENSNBRG00000002259)	lpar5b (ENSNBRG00000002226)	lpar5b (ENSNBRG00000002212)	ENSNBRG00000002192	meis3 (ENSNBRG00000002156) #22	ENSNBRG00000002133	ENSNBRG00000002115	dmac2 (ENSNBRG00000002103)	GJD2 (ENSNBRG00000002088)	nop53 (ENSNBRG00000002057) #16	ENSNBRG00000002036	ENSNBRG00000002020	psma6l (ENSNBRG00000001984)	ENSNBRG00000001894	sars2 (ENSNBRG00000001755)	si:dkey-260j18.2 (ENSNBRG00000001719)	slc5a2 (ENSNBRG00000001664)	fbxo46 (ENSNBRG00000001654)	coq8b (ENSNBRG00000001621)	numbl (ENSNBRG00000001614)
Haplochromini	ANCESTRAL SPECIES	35	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d.a.a.a.a.a	ENSGT00950000183136.b.b.d.a.a.a.a.b	ENSGT00950000183136.b.b.d.a.a.a.b	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.a	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Burton s mouthbrooder	MODERN SPECIES	349	ENSHBUG00000022617	CLSTN2 (ENSHBUG00000022673)	lpar5b (ENSHBUG00000022688)	rbp2a (ENSHBUG00000022702)	COPB2 (ENSHBUG00000022803)	mrps22 (ENSHBUG00000022826)	PIK3CB (ENSHBUG00000023142)	PER2 (ENSHBUG00000000709)	her13 (ENSHBUG00000023176)	her8.2 (ENSHBUG00000023184)	ENSHBUG00000023216	ITM2C (ENSHBUG00000023261)	lpar5b (ENSHBUG00000023274)	lpar5b (ENSHBUG00000023292)	ENSHBUG00000023359	meis3 (ENSHBUG00000023485) #22	ENSHBUG00000023507	sirt2 (ENSHBUG00000023526)	dmac2 (ENSHBUG00000023540)	GJD2 (ENSHBUG00000023556)	nop53 (ENSHBUG00000023625) #16	ENSHBUG00000023636	ENSHBUG00000023653	ENSHBUG00000023669	psma6l (ENSHBUG00000023708)	ENSHBUG00000023820	sars2 (ENSHBUG00000023829)	si:dkey-260j18.2 (ENSHBUG00000001323)	slc5a2 (ENSHBUG00000001326)	fbxo46 (ENSHBUG00000001328)	coq8b (ENSHBUG00000001335)
Haplochromini_A	ANCESTRAL SPECIES	40	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d.a.a.a.a.a	ENSGT00950000183136.b.b.d.a.a.b.a	ENSGT00950000183136.b.b.d.b	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
P. nyererei	MODERN SPECIES	617											lpar5b (ENSPNYG00000023507)	ENSPNYG00000023508	lpar5b (ENSPNYG00000023509)	ENSPNYG00000023510	ENSPNYG00000023511	meis3 (ENSPNYG00000000953) #22	ENSPNYG00000001048	sirt2 (ENSPNYG00000001121)	dmac2 (ENSPNYG00000001286)	GJD2 (ENSPNYG00000001299)	nop53 (ENSPNYG00000001341) #16	H3-3A (ENSPNYG00000001366)	ENSPNYG00000001401	ENSPNYG00000001432	psma6l (ENSPNYG00000001493)	ENSPNYG00000001634	sars2 (ENSPNYG00000001941)	si:dkey-260j18.2 (ENSPNYG00000002253)	slc5a2 (ENSPNYG00000002311)	fbxo46 (ENSPNYG00000002446)	coq8b (ENSPNYG00000002514)
Haplochromini_B	ANCESTRAL SPECIES	9	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d.a.a.a.a.a	ENSGT00950000183136.b.b.d.a.a.b.a	ENSGT00950000183136.b.b.d.b.a.a	ENSGT00950000183136.b.b.d.b.b	ENSGT00950000183136.b.b.d.a.b	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Zebra mbuna	MODERN SPECIES	106		PIK3CB (ENSMZEG00005027485)	PER2 (ENSMZEG00005027486)	her13 (ENSMZEG00005027487)	her8.2 (ENSMZEG00005027488)	ENSMZEG00005027489	ITM2C (ENSMZEG00005027491)	ENSMZEG00005027492	ENSMZEG00005027493	ENSMZEG00005027494	ENSMZEG00005027495	ENSMZEG00005027496	ENSMZEG00005027497	ENSMZEG00005027498	ENSMZEG00005027500	meis3 (ENSMZEG00005027502) #22	ENSMZEG00005027503	sirt2 (ENSMZEG00005027505)	dmac2 (ENSMZEG00005027509)	GJD2 (ENSMZEG00005027511)
Eastern happy	MODERN SPECIES	5	PIK3CB (ENSACLG00000012502)	PER2 (ENSACLG00000012344)	her13 (ENSACLG00000012297)	her8.2 (ENSACLG00000012275)	ENSACLG00000012262	ITM2C (ENSACLG00000012210)	ENSACLG00000012193	ENSACLG00000012181	lpar5b (ENSACLG00000012151)	lpar5b (ENSACLG00000012146)	lpar5b (ENSACLG00000012128)	lpar5b (ENSACLG00000012114)	lpar5b (ENSACLG00000012100)	lpar5b (ENSACLG00000012092)	ENSACLG00000012073	meis3 (ENSACLG00000012034) #22	ENSACLG00000012022	sirt2 (ENSACLG00000011953)	dmac2 (ENSACLG00000011868)	GJD2 (ENSACLG00000011848)	nop53 (ENSACLG00000011832) #16	ENSACLG00000011800	ENSACLG00000011785	psma6l (ENSACLG00000011745)	ENSACLG00000011693	sars2 (ENSACLG00000011683)	si:dkey-260j18.2 (ENSACLG00000011675)	slc5a2 (ENSACLG00000011662)	fbxo46 (ENSACLG00000011657)	coq8b (ENSACLG00000011621)	numbl (ENSACLG00000011583)
Nile tilapia	MODERN SPECIES	5	lpar5b (ENSONIG00000007952)	ENSONIG00000035058	ENSONIG00000038538	ENSONIG00000011592	ENSONIG00000031947	lpar5b (ENSONIG00000014920)	lpar5b (ENSONIG00000035817)	lpar5b (ENSONIG00000030598)	lpar5b (ENSONIG00000031177)	ENSONIG00000021150	lpar5b (ENSONIG00000033813)	ENSONIG00000039174	lpar5b (ENSONIG00000016611)	ENSONIG00000038920	ENSONIG00000016613	meis3 (ENSONIG00000016615) #22	ENSONIG00000028946	sirt2 (ENSONIG00000016619)	ENSONIG00000016623	GJD2 (ENSONIG00000021151)	nop53 (ENSONIG00000016624) #16	ENSONIG00000031544	ENSONIG00000016630	psma6l (ENSONIG00000016632)	ENSONIG00000030248	sars2 (ENSONIG00000016635)	si:dkey-260j18.2 (ENSONIG00000016640)	slc5a2 (ENSONIG00000016641)	fbxo46 (ENSONIG00000029952)	coq8b (ENSONIG00000016647)	numbl (ENSONIG00000016648)
Midas cichlid	MODERN SPECIES	236	lpar5b (ENSACIG00000003454)	rbp2a (ENSACIG00000003438)	COPB2 (ENSACIG00000003398)	mrps22 (ENSACIG00000003286)	PIK3CB (ENSACIG00000003131)	PER2 (ENSACIG00000002932)	her13 (ENSACIG00000002902)	her8.2 (ENSACIG00000002887)	ENSACIG00000002856	ITM2C (ENSACIG00000002801)	lpar5b (ENSACIG00000002793)	lpar5b (ENSACIG00000002782)	lpar5b (ENSACIG00000002773)	ENSACIG00000002760	ENSACIG00000002750	meis3 (ENSACIG00000002720) #22	ENSACIG00000002706	ENSACIG00000002701	sirt2 (ENSACIG00000002631)	dmac2 (ENSACIG00000002586)	GJD2 (ENSACIG00000002571)	nop53 (ENSACIG00000002467) #16	ENSACIG00000002268	ENSACIG00000002252	psma6l (ENSACIG00000002238)	ENSACIG00000002169	sars2 (ENSACIG00000002059)	si:dkey-260j18.2 (ENSACIG00000002034)	slc5a2 (ENSACIG00000002003)	fbxo46 (ENSACIG00000001982)	coq8b (ENSACIG00000001935)
Percomorphaceae_C	ANCESTRAL SPECIES	9	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Eupercaria	ANCESTRAL SPECIES	7	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263514.A.f.x.a.b.b	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000161634 #13	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a
Tetraodontidae	ANCESTRAL SPECIES	10	ENSGT00390000016324	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00940000160165.a.a.a	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267.f #16	ENSGT00940000161634 #13	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957	ENSGT00940000165302
Fugu	MODERN SPECIES	2	ENSTRUG00000008215	spsb4a (ENSTRUG00000026889)	CLSTN2 (ENSTRUG00000030827)	ENSTRUG00000032783	lpar5b (ENSTRUG00000023839)	rbp2a (ENSTRUG00000008045)	mrps22 (ENSTRUG00000007940)	PIK3CB (ENSTRUG00000007179)	PER2 (ENSTRUG00000006817)	her13 (ENSTRUG00000006688)	her8.2 (ENSTRUG00000006663)	ENSTRUG00000006438	ITM2C (ENSTRUG00000006075)	ENSTRUG00000005924	ENSTRUG00000032831	meis3 (ENSTRUG00000000345) #22	ENSTRUG00000024559	sirt2 (ENSTRUG00000005408)	dmac2 (ENSTRUG00000025807)	GJD2 (ENSTRUG00000005315)	nop53 (ENSTRUG00000004944) #16	ENSTRUG00000028860	otx5 (ENSTRUG00000033392) #13	psma6l (ENSTRUG00000020871)	sars2 (ENSTRUG00000004509)	si:dkey-260j18.2 (ENSTRUG00000031099)	slc5a2 (ENSTRUG00000003590)	fbxo46 (ENSTRUG00000029970)	coq8b (ENSTRUG00000001653)	numbl (ENSTRUG00000002686)	ENSTRUG00000002163
Tetraodon	MODERN SPECIES	26	ENSTNIG00000019509	ENSTNIG00000019510	dtd2 (ENSTNIG00000019511)	ENSTNIG00000019514	ENSTNIG00000019515	ENSTNIG00000019518	ENSTNIG00000019520	ENSTNIG00000019617	pip4k2aa (ENSTNIG00000019618)	ENSTNIG00000019619	ENSTNIG00000000963	ddx23 (ENSTNIG00000019621)	ENSTNIG00000019622	polr3h (ENSTNIG00000019623)	psmb2 (ENSTNIG00000019624)	meis3 (ENSTNIG00000019625) #22	ENSTNIG00000019626	pthlha (ENSTNIG00000000178)	ENSTNIG00000019628	ENSTNIG00000000159	ENSTNIG00000019629	ENSTNIG00000002019	ENSTNIG00000019631	ENSTNIG00000019632	ENSTNIG00000019633	ENSTNIG00000019634	ENSTNIG00000019637	ENSTNIG00000019638	ENSTNIG00000019739	ENSTNIG00000004973	ENSTNIG00000019740
Eupecaria_A	ANCESTRAL SPECIES	9	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263514.A.f.x.a.b.b	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000161634 #13	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a
Ballan wrasse	MODERN SPECIES	217							PIK3CB (ENSLBEG00000010941)	PER2 (ENSLBEG00000011024)	HES6 (ENSLBEG00000011136)	her8.2 (ENSLBEG00000011179)	ENSLBEG00000011209	ITM2C (ENSLBEG00000011245)	lpar5b (ENSLBEG00000011266)	lpar5b (ENSLBEG00000011279)	ENSLBEG00000011302	meis3 (ENSLBEG00000011340) #22	ENSLBEG00000011381	ENSLBEG00000011415	nop53 (ENSLBEG00000011432) #16	GJD2 (ENSLBEG00000011484)	ENSLBEG00000011493	psma6l (ENSLBEG00000011515)	ENSLBEG00000011550	sars2 (ENSLBEG00000011593)	si:dkey-260j18.2 (ENSLBEG00000011619)	slc5a2 (ENSLBEG00000011668)	fbxo46 (ENSLBEG00000011716)	coq8b (ENSLBEG00000011726)	numbl (ENSLBEG00000011765)	ENSLBEG00000011828	dpf1 (ENSLBEG00000011887)
Eupecaria_B	ANCESTRAL SPECIES	9	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.a.db.b	ENSGT00940000164977.b	ENSGT01100000263514.A.f.x.a.b.b	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000161634 #13	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533
Perciformes	ANCESTRAL SPECIES	10	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.a.db.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Perciformes_a	ANCESTRAL SPECIES	9	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.a.db.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Channel bull blenny	MODERN SPECIES	4	ENSCGOG00000007483	epha4a (ENSCGOG00000007497)	pxylp1 (ENSCGOG00000008533)	SLC25A36 (ENSCGOG00000008534)	spsb4a (ENSCGOG00000008585)	CLSTN2 (ENSCGOG00000008630)	ENSCGOG00000009663	mrps22 (ENSCGOG00000009668)	PIK3CB (ENSCGOG00000009836)	her13 (ENSCGOG00000011185)	her8.2 (ENSCGOG00000011188)	ENSCGOG00000011193	ITM2C (ENSCGOG00000011325)	ENSCGOG00000011328	ENSCGOG00000011330	meis3 (ENSCGOG00000011355) #22	ENSCGOG00000011934	sirt2 (ENSCGOG00000011964)	dmac2 (ENSCGOG00000012677)	psma6l (ENSCGOG00000012684)	ENSCGOG00000012785	sars2 (ENSCGOG00000012791)	psma6l (ENSCGOG00000012806)	sars2 (ENSCGOG00000012827)	si:dkey-260j18.2 (ENSCGOG00000012853)	slc5a2 (ENSCGOG00000012948)	fbxo46 (ENSCGOG00000014270)	coq8b (ENSCGOG00000014307)	numbl (ENSCGOG00000015510)	ENSCGOG00000015514	RASA2 (ENSCGOG00000015540)
Pike perch	MODERN SPECIES	60	spsb4a (ENSSLUG00000023357)	CLSTN2 (ENSSLUG00000023266)	lpar5b (ENSSLUG00000023242)	rbp2a (ENSSLUG00000023238)	COPB2 (ENSSLUG00000023150)	mrps22 (ENSSLUG00000023133)	PIK3CB (ENSSLUG00000022808)	PER2 (ENSSLUG00000022765)	her13 (ENSSLUG00000022759)	her8.2 (ENSSLUG00000022756)	ENSSLUG00000022753	ENSSLUG00000022750	ITM2C (ENSSLUG00000022743)	lpar5b (ENSSLUG00000022740)	ENSSLUG00000022736	meis3 (ENSSLUG00000022723) #22	ENSSLUG00000022715	sirt2 (ENSSLUG00000022155)	dmac2 (ENSSLUG00000022120)	ENSSLUG00000022111	GJD2 (ENSSLUG00000022109)	nop53 (ENSSLUG00000022102) #16	H3-3A (ENSSLUG00000022098)	ENSSLUG00000022092	psma6l (ENSSLUG00000022085)	ENSSLUG00000022078	sars2 (ENSSLUG00000021922)	si:dkey-260j18.2 (ENSSLUG00000021904)	slc5a2 (ENSSLUG00000020493)	fbxo46 (ENSSLUG00000020394)	coq8b (ENSSLUG00000020073)
Cottioidei	ANCESTRAL SPECIES	4	ENSGT00390000016324	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.a.db.a	ENSGT00940000161634 #13	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Lumpfish	MODERN SPECIES	4	SLC25A36 (ENSCLMG00005010096)	spsb4a (ENSCLMG00005010095)	lpar5b (ENSCLMG00005010094)	ENSCLMG00005010093	CLSTN2 (ENSCLMG00005010091)	rbp2a (ENSCLMG00005010090)	COPB2 (ENSCLMG00005010088)	mrps22 (ENSCLMG00005010084)	PIK3CB (ENSCLMG00005008841)	ENSCLMG00005008838	her13 (ENSCLMG00005008837)	her8.2 (ENSCLMG00005008835)	ENSCLMG00005008834	ITM2C (ENSCLMG00005008833)	ENSCLMG00005008832	meis3 (ENSCLMG00005008829) #22	ENSCLMG00005008826	sirt2 (ENSCLMG00005008246)	dmac2 (ENSCLMG00005008238)	ENSCLMG00005008233	otx5 (ENSCLMG00005008232) #13	psma6l (ENSCLMG00005008230)	ENSCLMG00005007988	sars2 (ENSCLMG00005007230)	si:dkey-260j18.2 (ENSCLMG00005007220)	fbxo46 (ENSCLMG00005007218)	coq8b (ENSCLMG00005005573)	numbl (ENSCLMG00005005413)	ENSCLMG00005005410	dpf1 (ENSCLMG00005005408)	ENSCLMG00005005406
Stickleback	MODERN SPECIES		ENSGACG00000005551	SLC25A36 (ENSGACG00000005559)	CLSTN2 (ENSGACG00000005585)	lpar5b (ENSGACG00000005595)	rbp2a (ENSGACG00000005598)	COPB2 (ENSGACG00000005621)	mrps22 (ENSGACG00000005634)	foxl2b (ENSGACG00000005639)	PIK3CB (ENSGACG00000005645)	ENSGACG00000005662	HES6 (ENSGACG00000005680)	ENSGACG00000005684	ENSGACG00000005715	ENSGACG00000005721	ENSGACG00000005725	meis3 (ENSGACG00000005732) #22	ENSGACG00000005744	sirt2 (ENSGACG00000005747)	dmac2 (ENSGACG00000005762)	GJD2 (ENSGACG00000005764)	nop53 (ENSGACG00000005766) #16	ENSGACG00000005779	otx5 (ENSGACG00000005793) #13	psma6l (ENSGACG00000005807)	ENSGACG00000005815	ENSGACG00000005818	sars2 (ENSGACG00000005820)	slc5a2 (ENSGACG00000005825)	fbxo46 (ENSGACG00000005834)	coq8b (ENSGACG00000005843)	numbl (ENSGACG00000005869)
Eupecaria_C	ANCESTRAL SPECIES	7	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263514.A.f.x.a.b.b	ENSGT00940000161634 #13	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Gilthead seabream	MODERN SPECIES	11	PIK3CB (ENSSAUG00010011008)	PER2 (ENSSAUG00010010319)	HES6 (ENSSAUG00010010304)	her8.2 (ENSSAUG00010010303)	ENSSAUG00010010300	ITM2C (ENSSAUG00010010296)	lpar5b (ENSSAUG00010010292)	lpar5b (ENSSAUG00010010291)	lpar5b (ENSSAUG00010010288)	lpar5b (ENSSAUG00010010286)	lpar5b (ENSSAUG00010010281)	lpar5b (ENSSAUG00010010279)	lpar5b (ENSSAUG00010010276)	ENSSAUG00010010272	ENSSAUG00010010270	meis3 (ENSSAUG00010009224) #22	ENSSAUG00010009191	sirt2 (ENSSAUG00010006875)	dmac2 (ENSSAUG00010006798)	GJD2 (ENSSAUG00010006796)	nop53 (ENSSAUG00010006791) #16	H3-3A (ENSSAUG00010006779)	ENSSAUG00010006775	psma6l (ENSSAUG00010006771)	ENSSAUG00010006768	sars2 (ENSSAUG00010006213)	si:dkey-260j18.2 (ENSSAUG00010006159)	slc5a2 (ENSSAUG00010001886)	fbxo46 (ENSSAUG00010001608)	coq8b (ENSSAUG00010000998)	numbl (ENSSAUG00010000962)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	5	ENSGT00390000016324	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.a.eb	ENSGT00940000161634 #13	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
European seabass	MODERN SPECIES	3	ENSDLAG00005019627	ENSDLAG00005029656	ENSDLAG00005029788	RBP2 (ENSDLAG00005026550)	COPB2 (ENSDLAG00005020529)	mrps22 (ENSDLAG00005020753)	foxl2 (ENSDLAG00005034171)	PIK3CB (ENSDLAG00005020770)	ENSDLAG00005020824	ENSDLAG00005020871	ENSDLAG00005020875	ENSDLAG00005020882	ENSDLAG00005020902	ENSDLAG00005020916	ENSDLAG00005020923	meis3 (ENSDLAG00005020964) #22	ENSDLAG00005021984	sirt2 (ENSDLAG00005022006)	dmac2 (ENSDLAG00005022078)	ENSDLAG00005027099	ENSDLAG00005029020	nop53 (ENSDLAG00005034277) #16	ENSDLAG00005032621	ENSDLAG00005022137 #13	ENSDLAG00005033478	ENSDLAG00005022147	sars2 (ENSDLAG00005022167)	si:dkey-260j18.2 (ENSDLAG00005022282)	slc5a2 (ENSDLAG00005022301)	fbxo46 (ENSDLAG00005030638)	coq8b (ENSDLAG00005022986)
Large yellow croaker	MODERN SPECIES	479	spsb4a (ENSLCRG00005014643)	CLSTN2 (ENSLCRG00005014635)	lpar5b (ENSLCRG00005014634)	rbp2a (ENSLCRG00005014633)	COPB2 (ENSLCRG00005014204)	mrps22 (ENSLCRG00005014181)	PIK3CB (ENSLCRG00005011368)	PER2 (ENSLCRG00005011302)	HES6 (ENSLCRG00005011299)	her8.2 (ENSLCRG00005011297)	ENSLCRG00005011293	ITM2C (ENSLCRG00005011291)	lpar5b (ENSLCRG00005011289)	ENSLCRG00005011287	ENSLCRG00005011285	meis3 (ENSLCRG00005010587) #22	ENSLCRG00005010574	sirt2 (ENSLCRG00005010546)	dmac2 (ENSLCRG00005010534)	ENSLCRG00005010515	GJD2 (ENSLCRG00005010509)	nop53 (ENSLCRG00005010506) #16	ENSLCRG00005010502	ENSLCRG00005010500	otx5 (ENSLCRG00005010499) #13	psma6l (ENSLCRG00005010496)	ENSLCRG00005010490	sars2 (ENSLCRG00005009603)	si:dkey-260j18.2 (ENSLCRG00005009592)	slc5a2 (ENSLCRG00005009308)	fbxo46 (ENSLCRG00005009297)
Percomorphaceae_D	ANCESTRAL SPECIES	9	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Carangaria	ANCESTRAL SPECIES	8	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Pleuronectoidei	ANCESTRAL SPECIES	13	ENSGT00390000016324	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.d	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957	ENSGT00940000165302
Turbot	MODERN SPECIES	15	ENSSMAG00000027874	ENSSMAG00000020698	ENSSMAG00000020702	RBP2 (ENSSMAG00000025467)	COPB2 (ENSSMAG00000020707)	MRPS22 (ENSSMAG00000020714)	PIK3CB (ENSSMAG00000000112)	ENSSMAG00000000129	ENSSMAG00000029620	ENSSMAG00000000161	ENSSMAG00000000166	ENSSMAG00000000194	ENSSMAG00000000173	ENSSMAG00000036287	ENSSMAG00000024997	meis3 (ENSSMAG00000000184) #22	sirt2 (ENSSMAG00000000201)	dmac2 (ENSSMAG00000000205)	ENSSMAG00000000207	nop53 (ENSSMAG00000000212) #16	ENSSMAG00000021956	ENSSMAG00000000215	ENSSMAG00000000220	ENSSMAG00000000225	ENSSMAG00000000231	sars2 (ENSSMAG00000000240)	si:dkey-260j18.2 (ENSSMAG00000028613)	slc5a2 (ENSSMAG00000000249)	fbxo46 (ENSSMAG00000027324)	coq8b (ENSSMAG00000000271)	numbl (ENSSMAG00000000283)
Tongue sole	MODERN SPECIES	14	dph1 (ENSCSEG00000013044)	rtn4rl1b (ENSCSEG00000013052)	rpa1 (ENSCSEG00000013066)	serpinf2b (ENSCSEG00000013101)	wdr81 (ENSCSEG00000013116)	SLC13A5 (ENSCSEG00000013141)	ENSCSEG00000013153	ENSCSEG00000013187	txndc17 (ENSCSEG00000013198)	rbp2a (ENSCSEG00000013206)	mrps22 (ENSCSEG00000013210)	foxl2 (ENSCSEG00000013219)	PIK3CB (ENSCSEG00000013234)	ENSCSEG00000013321	ENSCSEG00000013342	meis3 (ENSCSEG00000013355) #22	ENSCSEG00000013383	ENSCSEG00000013398	GPR149 (ENSCSEG00000013409)	dhx36 (ENSCSEG00000013424)	ARHGEF26 (ENSCSEG00000013440)	BLTP2 (ENSCSEG00000013458)	ENSCSEG00000013504	glod4 (ENSCSEG00000013507)	mrm3a (ENSCSEG00000013521)	nxn (ENSCSEG00000013526)	ENSCSEG00000013540	INTS4 (ENSCSEG00000013562)	aamdc (ENSCSEG00000013602)	acad8 (ENSCSEG00000013620)	ENSCSEG00000013629
Carangaria_A	ANCESTRAL SPECIES	37	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.b	ENSGT00550000074807.c.i.b	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Seriola	ANCESTRAL SPECIES	51	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.b	ENSGT00550000074807.c.i.b	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Greater amberjack	MODERN SPECIES	114	spsb4a (ENSSDUG00000009950)	CLSTN2 (ENSSDUG00000009967)	lpar5b (ENSSDUG00000010000)	rbp2a (ENSSDUG00000010022)	COPB2 (ENSSDUG00000010056)	mrps22 (ENSSDUG00000010135)	foxl2b (ENSSDUG00000010149)	PIK3CB (ENSSDUG00000010182)	PER2 (ENSSDUG00000010286)	HES6 (ENSSDUG00000010317)	her8.2 (ENSSDUG00000010328)	ENSSDUG00000010338	ITM2C (ENSSDUG00000010370)	lpar5b (ENSSDUG00000010411)	ENSSDUG00000010420	meis3 (ENSSDUG00000010461) #22	ENSSDUG00000010510	sirt2 (ENSSDUG00000010530)	dmac2 (ENSSDUG00000010554)	GJD2 (ENSSDUG00000010563)	nop53 (ENSSDUG00000010575) #16	ENSSDUG00000010591	ENSSDUG00000010597	ENSSDUG00000010603	psma6l (ENSSDUG00000010613)	ENSSDUG00000010641	sars2 (ENSSDUG00000010702)	si:dkey-260j18.2 (ENSSDUG00000010732)	slc5a2 (ENSSDUG00000010836)	fbxo46 (ENSSDUG00000011934)	coq8b (ENSSDUG00000011948)
Yellowtail amberjack	MODERN SPECIES	2693															ENSSLDG00000025059	meis3 (ENSSLDG00000025073) #22	ENSSLDG00000025083	sirt2 (ENSSLDG00000025086)	dmac2 (ENSSLDG00000000071)	GJD2 (ENSSLDG00000000076)	nop53 (ENSSLDG00000000140) #16	ENSSLDG00000000279	ENSSLDG00000000296	ENSSLDG00000000314	psma6l (ENSSLDG00000000342)	ENSSLDG00000000383	sars2 (ENSSLDG00000000426)	si:dkey-260j18.2 (ENSSLDG00000000602)	slc5a2 (ENSSLDG00000000683)	fbxo46 (ENSSLDG00000000745)	coq8b (ENSSLDG00000000752)
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	59					pak1 (ENSLCAG00010023183)	aqp11 (ENSLCAG00010023196)	clns1a (ENSLCAG00010023198)	panx1a (ENSLCAG00010023208)	aamdc (ENSLCAG00010023212)	INTS4 (ENSLCAG00010023228)	ENSLCAG00010023233	ITM2C (ENSLCAG00010023241)	lpar5b (ENSLCAG00010023244)	ENSLCAG00010023246	ENSLCAG00010023250	meis3 (ENSLCAG00010023261) #22	mvp (ENSLCAG00010023292)	CASKIN2 (ENSLCAG00010023315)	ST6GALNAC2 (ENSLCAG00010023319)	si:ch73-366l1.5 (ENSLCAG00010023323)	jmjd6 (ENSLCAG00010023324)	mettl23 (ENSLCAG00010023329)	ENSLCAG00010023331	ENSLCAG00010023333	casc3 (ENSLCAG00010023336)	RAPGEFL1 (ENSLCAG00010023342)	ENSLCAG00010023346
Barramundi perch	MODERN SPECIES	1102																meis3 (ENSLCAG00010000084) #22
Anabantaria	ANCESTRAL SPECIES	9	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.b.a.a	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Zig-zag eel	MODERN SPECIES	4	EPHA4 (ENSMAMG00000012022)	pxylp1 (ENSMAMG00000012120)	ENSMAMG00000026348	ENSMAMG00000012146	ENSMAMG00000012176	ENSMAMG00000024587	RBP2 (ENSMAMG00000012240)	MRPS22 (ENSMAMG00000012264)	ENSMAMG00000012296	ENSMAMG00000012347	ENSMAMG00000012374	ENSMAMG00000027547	ENSMAMG00000012469	ENSMAMG00000012502	ENSMAMG00000028330	meis3 (ENSMAMG00000012541) #22	ENSMAMG00000026554	sirt2 (ENSMAMG00000012576)	dmac2 (ENSMAMG00000012635)	ENSMAMG00000012644	nop53 (ENSMAMG00000012652) #16	ENSMAMG00000027640	ENSMAMG00000012703	ENSMAMG00000012714	ENSMAMG00000012743	sars2 (ENSMAMG00000012860)	si:dkey-260j18.2 (ENSMAMG00000025696)	slc5a2 (ENSMAMG00000012889)	fbxo46 (ENSMAMG00000012930)	ENSMAMG00000012936	dpf1 (ENSMAMG00000012961)
Anabantoidei	ANCESTRAL SPECIES	14	ENSGT00940000154369.g.b	ENSGT01030000234629.C.b	ENSGT00950000183086.a.a.b.h.a	ENSGT00950000183136.b.b.c	ENSGT00940000160165.a.b	ENSGT00900000141083.c.b	ENSGT00390000006095	ENSGT00940000157522	ENSGT00940000156342.d	ENSGT00940000161398.e	ENSGT00940000164578.a.a	ENSGT00390000004360.a.a	ENSGT00950000183115.a.a.a	ENSGT00950000183136.b.b.d	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT01100000263504.a.b.a.b.a.a	ENSGT00940000164977.b	ENSGT00550000074807.c	ENSGT00390000001278.a	ENSGT00940000153792.A	ENSGT00940000156265	ENSGT00940000160533	ENSGT00530000064222.a	ENSGT00940000158965	ENSGT00940000160957
Climbing perch	MODERN SPECIES	4	ENSATEG00000021585	ENSATEG00000021594	ENSATEG00000021614	ENSATEG00000026860	RBP2 (ENSATEG00000021618)	COPB2 (ENSATEG00000021631)	MRPS22 (ENSATEG00000021646)	PIK3CB (ENSATEG00000021657)	ENSATEG00000021691	ENSATEG00000021709	ENSATEG00000025611	ENSATEG00000021754	ITM2C (ENSATEG00000021766)	ENSATEG00000021777	ENSATEG00000021783	meis3 (ENSATEG00000021799) #22	ENSATEG00000021821	sirt2 (ENSATEG00000028072)	dmac2 (ENSATEG00000021845)	ENSATEG00000021854	nop53 (ENSATEG00000021860) #16	ENSATEG00000026782	ENSATEG00000021878	ENSATEG00000021886	ENSATEG00000030000	sars2 (ENSATEG00000021919)	si:dkey-260j18.2 (ENSATEG00000021944)	slc5a2 (ENSATEG00000021955)	fbxo46 (ENSATEG00000021969)	numbl (ENSATEG00000021980)	ENSATEG00000022033
Siamese fighting fish	MODERN SPECIES	4	pxylp1 (ENSBSLG00000018811)	ENSBSLG00000018797	SLC25A36 (ENSBSLG00000018769)	spsb4a (ENSBSLG00000018738)	CLSTN2 (ENSBSLG00000016943)	rbp2a (ENSBSLG00000015872)	COPB2 (ENSBSLG00000015276)	mrps22 (ENSBSLG00000015161)	PIK3CB (ENSBSLG00000013020)	ENSBSLG00000012891	her13 (ENSBSLG00000012880)	ENSBSLG00000012856	ITM2C (ENSBSLG00000012845)	ENSBSLG00000012841	ENSBSLG00000012832	meis3 (ENSBSLG00000012619) #22	ENSBSLG00000012579	sirt2 (ENSBSLG00000012322)	dmac2 (ENSBSLG00000012296)	GJD2 (ENSBSLG00000012289)	nop53 (ENSBSLG00000012208) #16	ENSBSLG00000012179	ENSBSLG00000012150	ENSBSLG00000012130	psma6l (ENSBSLG00000012070)	sars2 (ENSBSLG00000011488)	si:dkey-260j18.2 (ENSBSLG00000011464)	slc5a2 (ENSBSLG00000009330)	fbxo46 (ENSBSLG00000009187)	coq8b (ENSBSLG00000009008)	numbl (ENSBSLG00000008765)
Cod	MODERN SPECIES	7	numbl (ENSGMOG00000033902)	coq8b (ENSGMOG00000014601)	fbxo46 (ENSGMOG00000029757)	slc5a2 (ENSGMOG00000014505)	si:dkey-260j18.2 (ENSGMOG00000029742)	sars2 (ENSGMOG00000014424)	ENSGMOG00000030952	ENSGMOG00000014383	ENSGMOG00000027217	ENSGMOG00000022782	nop53 (ENSGMOG00000014299) #16	ENSGMOG00000003494	ENSGMOG00000014272	sirt2 (ENSGMOG00000014240)	ENSGMOG00000035282	ENSGMOG00000010627 #22	ENSGMOG00000014166	ENSGMOG00000029526	ENSGMOG00000033018	ENSGMOG00000028584	ENSGMOG00000027451	ENSGMOG00000014046	PIK3CB (ENSGMOG00000013996)	MRPS22 (ENSGMOG00000013972)	COPB2 (ENSGMOG00000013927)	RBP2 (ENSGMOG00000013916)	ENSGMOG00000022668	ENSGMOG00000028813	ENSGMOG00000008822	ENSGMOG00000008804	ENSGMOG00000001882
Otomorpha	ANCESTRAL SPECIES	353				ENSGT00390000000417.a.a.b.b	ENSGT00390000007686.a	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000165978	ENSGT00390000018436.b	ENSGT00940000158344.a.a ##21	ENSGT00910000144115.b.bc.a	ENSGT00940000167342	ENSGT01030000234642.a.b.b.d.b.c.a	ENSGT00940000159610	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16
Otophysi	ANCESTRAL SPECIES	276											ENSGT00910000144115.b.bc.a	ENSGT00940000167342	ENSGT01030000234642.a.b.b.d.b.c.a	ENSGT00940000159610	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00940000165905	ENSGT00950000183107.a.b.a	ENSGT00940000160165.a
Characiphysae	ANCESTRAL SPECIES	50	ENSGT00940000160232	ENSGT00940000157786	ENSGT00940000166907	ENSGT00940000157152.A	ENSGT00940000156345.k.a	ENSGT00940000168646.a	ENSGT00950000183018.a.d.a	ENSGT00390000003115	ENSGT00940000158139.h	ENSGT00440000038159	ENSGT00910000144115.b.bc.a	ENSGT00940000167342	ENSGT01030000234642.a.b.b.d.b.c.a	ENSGT00940000159610	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT01030000235087	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00940000165905	ENSGT00950000183107.a.b.a
Channel catfish	MODERN SPECIES	12	ENSIPUG00000007470	limk1 (ENSIPUG00000007559)	SUCNR1 (ENSIPUG00000007630)	SUCNR1 (ENSIPUG00000007646)	SUCNR1 (ENSIPUG00000007671)	SUCNR1 (ENSIPUG00000007678)	SUCNR1 (ENSIPUG00000007683)	nipsnap2 (ENSIPUG00000007704)	psph (ENSIPUG00000007821)	phkg1 (ENSIPUG00000007850)	chchd2 (ENSIPUG00000007918)	ENSIPUG00000007928	hnrnpl (ENSIPUG00000007937)	ech1 (ENSIPUG00000007967)	ENSIPUG00000007995	meis3 (ENSIPUG00000008024) #22	ENSIPUG00000008083	sirt2 (ENSIPUG00000008099)	atp5sl (ENSIPUG00000008114)	GJD2 (ENSIPUG00000008127)	nop53 (ENSIPUG00000008154) #16	ATM (ENSIPUG00000008217)	bace2 (ENSIPUG00000008381)	DSCAM (ENSIPUG00000008441)	PCP4 (ENSIPUG00000008528)	ENSIPUG00000008537	sh3bgr (ENSIPUG00000008561)	get1 (ENSIPUG00000008677)	ENSIPUG00000008688	rbp2a (ENSIPUG00000008698)	Mrps22 (ENSIPUG00000008729)
Characiphysae_b	ANCESTRAL SPECIES	54	ENSGT00940000160232	ENSGT00940000157786	ENSGT00940000154816.a.a	ENSGT00940000157152.A	ENSGT00940000156345.k.a	ENSGT00940000168646.a	ENSGT00950000183018.a.d.a	ENSGT00390000003115	ENSGT00940000158139.h	ENSGT00440000038159	ENSGT00910000144115.b.bc.a	ENSGT00940000167342	ENSGT01030000234642.a.b.b.d.b.c.a	ENSGT00940000159610	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT01030000235087	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00940000165905	ENSGT00950000183107.a.b.a	ENSGT00940000160165.a
Characoidei	ANCESTRAL SPECIES	55	ENSGT00940000160232	ENSGT00940000162660.a.i	ENSGT00940000157786	ENSGT00940000154816.a.a	ENSGT00940000157152.A	ENSGT00940000156345.k.a	ENSGT00940000168646.a	ENSGT00950000183018.a.d.a	ENSGT00390000003115	ENSGT00940000158139.h	ENSGT00440000038159	ENSGT00910000144115.b.bc.a	ENSGT01030000234642.a.b.b.d.b.c.a	ENSGT00940000159610	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a
Red-bellied piranha	MODERN SPECIES	522															ENSPNAG00000012771	meis3 (ENSPNAG00000002355) #22	ENSPNAG00000002338	sirt2 (ENSPNAG00000002307)	dmac2 (ENSPNAG00000012543)	GJD2 (ENSPNAG00000012536)	nop53 (ENSPNAG00000012520) #16	ATM (ENSPNAG00000002271)	bace2 (ENSPNAG00000012452)
Mexicana tetra	MODERN SPECIES	8	ENSAMXG00000036988	ENSAMXG00000037346	ENSAMXG00000030510	limk1a (ENSAMXG00000014942)	ENSAMXG00000035969	NIPSNAP2 (ENSAMXG00000043257)	psph (ENSAMXG00000014924)	phkg1a (ENSAMXG00000031099)	chchd2 (ENSAMXG00000037488)	ENSAMXG00000031648	hnrnpl2 (ENSAMXG00000014917)	ech1 (ENSAMXG00000029218)	ech1 (ENSAMXG00000038664)	ech1 (ENSAMXG00000014910)	ENSAMXG00000014906	meis3 (ENSAMXG00000038115) #22	ENSAMXG00000014893	sirt2 (ENSAMXG00000044113)	dmac2 (ENSAMXG00000034376)	GJD2 (ENSAMXG00000014887)	nop53 (ENSAMXG00000014883) #16	ATM (ENSAMXG00000014851)	bace2 (ENSAMXG00000034812)	DSCAM (ENSAMXG00000014775)	PCP4 (ENSAMXG00000014827)	ENSAMXG00000029527	rps28 (ENSAMXG00000042497)	foxl2a (ENSAMXG00000026282)	ENSAMXG00000039377	ENSAMXG00000037000	ENSAMXG00000040635
Electric eel	MODERN SPECIES	398	klf17 (ENSEEEG00000016038)	slc6a9 (ENSEEEG00000015999)	ENSEEEG00000015996	zgc:113531 (ENSEEEG00000015993)	b4galt2 (ENSEEEG00000015992)	atp6v0b (ENSEEEG00000015978)	NIPSNAP2 (ENSEEEG00000015973)	psph (ENSEEEG00000015971)	phkg1a (ENSEEEG00000015968)	chchd2 (ENSEEEG00000015966)	ENSEEEG00000015964	ENSEEEG00000015963	hnrnpl2 (ENSEEEG00000015760)	ech1 (ENSEEEG00000015750)	ENSEEEG00000015749	meis3 (ENSEEEG00000015746) #22	ENSEEEG00000015743	sirt2 (ENSEEEG00000015419)	dmac2 (ENSEEEG00000015412)	GJD2 (ENSEEEG00000015411)	nop53 (ENSEEEG00000015409) #16	ATM (ENSEEEG00000015390)
Cyprinoidei	ANCESTRAL SPECIES	127						ENSGT00390000017288	ENSGT00390000003919	ENSGT00940000164578.a.a	ENSGT00940000161398.e	ENSGT00940000156342.d	ENSGT00940000157522	ENSGT00940000162075.a.a	ENSGT00390000006095	ENSGT00940000159610	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00940000165905	ENSGT00980000198612.h	ENSGT00950000183107.a.b.a	ENSGT00940000160165.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	630											ENSGT00940000157522.f	ENSGT00940000162075.a.a	ENSGT00390000006095.b	ENSGT00940000159610.q	ENSGT00940000160281.m	ENSGT00940000161057.m #22	ENSGT00940000154866.A.c.a	ENSGT00940000157514.a.d	ENSGT01090000260005.a.b.a.b.b.i.b	ENSGT00940000159548.h	ENSGT00940000154678.a.a.a	ENSGT00530000064267.l	ENSGT00940000159847.a	ENSGT00940000164489	ENSGT00950000183107.a.b.a.d
Goldfish	MODERN SPECIES	764										ENSCARG00000036678	ENSCARG00000025416	ENSCARG00000025430	ENSCARG00000025453	mrps22 (ENSCARG00000025465)	ech1 (ENSCARG00000025517)	meis3 (ENSCARG00000026219) #22	ENSCARG00000026273	sirt2 (ENSCARG00000026297)	ENSCARG00000026372	GJD2 (ENSCARG00000026379)	ENSCARG00000026384	bace2 (ENSCARG00000026392)	DSCAM (ENSCARG00000026561)	ENSCARG00000027641	ENSCARG00000027670	sh3bgr (ENSCARG00000027700)	get1 (ENSCARG00000027788)	ENSCARG00000027803	ENSCARG00000027851	rbp2a (ENSCARG00000028554)	hnrnpl2 (ENSCARG00000028589)
Cyprininae_a	ANCESTRAL SPECIES	153	ENSGT01100000263484.C.a.f	ENSGT00940000159319.j	ENSGT00990000203619.B.a.a.b	ENSGT00940000158925.f	ENSGT00950000183026.A.b.c	ENSGT00950000183026.B.c.a.c	ENSGT01030000234614.B.a.a.b.b.t	ENSGT00730000110966.b.d	ENSGT00940000161558.b.b	ENSGT01040000240444.A.a.a.a.a.a.b	ENSGT00940000157522.f	ENSGT00940000162075.a.a.a	ENSGT00390000006095.b	ENSGT00940000159610.q	ENSGT00940000160281.m	ENSGT00940000161057.m #22	ENSGT00940000154866.A.c.a	ENSGT00940000157514.a.d	ENSGT01090000260005.a.b.a.b.b.i.b	ENSGT00940000159548.h	ENSGT00940000154678.a.a.a	ENSGT01030000235087	ENSGT00940000159847.b.a	ENSGT00990000210494	ENSGT00950000183107.a.b.a.c.b	ENSGT00940000160165.a.e.b	ENSGT01030000234642.a.b.b.d.b.c.a.e	ENSGT00440000038159.h	ENSGT00940000158139.h.a	ENSGT00940000165793.c.a	ENSGT00940000153936.b.c.b
Common carp reference	MODERN SPECIES	39	MLNR (ENSCCRG00000065188)	ENSCCRG00000022881	ENSCCRG00000080116	RCBTB2 (ENSCCRG00000071823)	ENSCCRG00000004796	ENSCCRG00000066850	stoml3a (ENSCCRG00000063608)	foxo1a (ENSCCRG00000055990)	ENSCCRG00000067140	cog6 (ENSCCRG00000015765)	lpar6a (ENSCCRG00000056793)	foxl2a (ENSCCRG00000072197)	mrps22 (ENSCCRG00000067440)	ech1 (ENSCCRG00000003219)	ENSCCRG00000050926	meis3 (ENSCCRG00000011800) #22	ENSCCRG00000080397	sirt2 (ENSCCRG00000018661)	ENSCCRG00000018711	ENSCCRG00000060632	ENSCCRG00000068864	ENSCCRG00000028371	ENSCCRG00000076327	bace2 (ENSCCRG00000035987)	ENSCCRG00000019611	PCP4 (ENSCCRG00000080163)	ENSCCRG00000071445	ENSCCRG00000061179	ENSCCRG00000009160	sh3bgr (ENSCCRG00000073478)	ENSCCRG00000009137
Golden-line barbel	MODERN SPECIES	255	ogfr (ENSSGRG00000013708)	samhd1 (ENSSGRG00000013516)	l1camb (ENSSGRG00000013512)	NEK3 (ENSSGRG00000013510)	NEK3 (ENSSGRG00000013509)	lpar6a (ENSSGRG00000013506)	ENSSGRG00000013504	her13 (ENSSGRG00000013503)	her8.2 (ENSSGRG00000013502)	PIK3CB (ENSSGRG00000010239)	foxl2a (ENSSGRG00000010192)	mrps22 (ENSSGRG00000010189)	ech1 (ENSSGRG00000010186)	ENSSGRG00000010185	ENSSGRG00000010184	meis3 (ENSSGRG00000010183) #22	ENSSGRG00000010182	ENSSGRG00000010179	dmac2 (ENSSGRG00000010178)	nop53 (ENSSGRG00000010175) #16	bace2 (ENSSGRG00000010174)
Cyprininae	ANCESTRAL SPECIES	77	ENSGT00390000013518.i	ENSGT00990000203589.a.b.a.b.rb.a	ENSGT00940000159738	ENSGT01040000240444.A.a.a.a.a.a.a	ENSGT00940000154507.s.b	ENSGT00390000017288	ENSGT00390000003919	ENSGT00940000159055.j	ENSGT00940000164578.a.a	ENSGT00940000161398.e.c	ENSGT00940000156342.d	ENSGT00940000157522.e	ENSGT00390000006095.a	ENSGT00940000159610.r	ENSGT00940000160281.n	ENSGT00940000161057.n #22	ENSGT00940000154866.A.c.b	ENSGT00940000157514.a.c	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i.a	ENSGT00390000017267.a #16	ENSGT00670000098061	ENSGT00940000159548.g	ENSGT00940000154678.a.a.b	ENSGT01030000235087	ENSGT00940000165615.b	ENSGT00940000159847.b.b	ENSGT00940000165905	ENSGT00940000159847.b.a	ENSGT00950000183107.a.b.a.c.a	ENSGT00940000160165.a.e.a
Goldfish	MODERN SPECIES	6	ENSCARG00000001945	eif4h (ENSCARG00000055267)	rffl (ENSCARG00000055234)	ENSCARG00000055223	tfdp2 (ENSCARG00000055153)	atp1b3b (ENSCARG00000055071)	ece2b (ENSCARG00000053275)	ENSCARG00000052931	rnf168 (ENSCARG00000052893)	ENSCARG00000052881	ENSCARG00000052854	ENSCARG00000052846	PIK3CB (ENSCARG00000051175)	mrps22 (ENSCARG00000050965)	ENSCARG00000050850	meis3 (ENSCARG00000050764) #22	ENSCARG00000050754	sirt2 (ENSCARG00000050602)	dmac2 (ENSCARG00000050581)	GJD2 (ENSCARG00000050566)	nop53 (ENSCARG00000050462) #16	ATM (ENSCARG00000050291)	bace2 (ENSCARG00000050169)	DSCAM (ENSCARG00000048654)	ENSCARG00000048452	ENSCARG00000048445	ENSCARG00000048428	sh3bgr (ENSCARG00000048317)	get1 (ENSCARG00000048265)	ENSCARG00000048155	rbp2a (ENSCARG00000048048)
Cyprininae_a	ANCESTRAL SPECIES	92	ENSGT00990000203589.a.b.a.b.rb.a	ENSGT00940000159738	ENSGT01040000240444.A.a.a.a.a.a.a	ENSGT00940000154507.s.b	ENSGT00390000017288	ENSGT00390000003919	ENSGT00940000159055.j	ENSGT00940000164578.a.a	ENSGT00940000161398.e.c	ENSGT00940000156342.d	ENSGT00940000157522.e	ENSGT00940000162075.a.a.b	ENSGT00390000006095.a	ENSGT00940000159610.r	ENSGT00940000160281.n	ENSGT00940000161057.n #22	ENSGT00940000154866.A.c.b	ENSGT00940000157514.a.c	ENSGT00940000160500	ENSGT01090000260005.a.b.a.b.b.i.a	ENSGT00390000017267.a #16	ENSGT00670000098061	ENSGT00940000159548.g	ENSGT00940000154678.a.a.b	ENSGT00940000165615.b	ENSGT00940000159847.b.b	ENSGT00940000165905	ENSGT00950000183107.a.b.a.c.a	ENSGT00940000160165.a.f	ENSGT00530000064267.l	ENSGT00940000159847.a
Common carp reference	MODERN SPECIES	26	ENSCCRG00000061710	ENSCCRG00000036653	ENSCCRG00000007091	ENSCCRG00000079425	ENSCCRG00000043205	ENSCCRG00000067993	ENSCCRG00000076132	PIK3CB (ENSCCRG00000042122)	foxl2a (ENSCCRG00000060109)	ENSCCRG00000067860	ENSCCRG00000063397	ENSCCRG00000068529	mrps22 (ENSCCRG00000003197)	ech1 (ENSCCRG00000018563)	ENSCCRG00000018642	meis3 (ENSCCRG00000068048) #22	ENSCCRG00000027001	sirt2 (ENSCCRG00000027025)	dmac2 (ENSCCRG00000027499)	ENSCCRG00000058802	nop53 (ENSCCRG00000018713) #16	ENSCCRG00000018719	bace2 (ENSCCRG00000036512)	ENSCCRG00000016610	PCP4 (ENSCCRG00000013659)	ENSCCRG00000010280	sh3bgr (ENSCCRG00000082047)	get1 (ENSCCRG00000009175)	ENSCCRG00000009108	rbp2a (ENSCCRG00000009103)	hnrnpl2 (ENSCCRG00000007902)
Golden-line barbel	MODERN SPECIES	1135											PIK3CB (ENSSGRG00000039709)	mrps22 (ENSSGRG00000040703)	ech1 (ENSSGRG00000040704)	ENSSGRG00000040709	ENSSGRG00000040710	meis3 (ENSSGRG00000040711) #22	sirt2 (ENSSGRG00000040714)	dmac2 (ENSSGRG00000040932)	GJD2 (ENSSGRG00000040933)	nop53 (ENSSGRG00000040934) #16
Zebrafish	MODERN SPECIES	6	EGLN2 (ENSDARG00000062562)	ENSDARG00000087835	tnfrsf19 (ENSDARG00000041869)	MIPEP (ENSDARG00000055344)	bach1a (ENSDARG00000062553)	cadm2b (ENSDARG00000062633)	GBE1 (ENSDARG00000099524)	SLC7A1 (ENSDARG00000100227)	her13 (ENSDARG00000007097)	her8.2 (ENSDARG00000069675)	PIK3CB (ENSDARG00000075253)	foxl2a (ENSDARG00000042180)	si:ch73-311h14.2 (ENSDARG00000098999)	mrps22 (ENSDARG00000018073)	ech1 (ENSDARG00000012915)	meis3 (ENSDARG00000002795) #22	sirt2 (ENSDARG00000011488)	dmac2 (ENSDARG00000096597)	nop53 (ENSDARG00000100452) #16	ATM (ENSDARG00000002385)	bace2 (ENSDARG00000044781)	DSCAM (ENSDARG00000028118)	PCP4 (ENSDARG00000110729)	ENSDARG00000090953	sh3bgr (ENSDARG00000021633)	get1 (ENSDARG00000074271)	si:ch73-281n10.2 (ENSDARG00000097102)	ENSDARG00000074747	rbp2a (ENSDARG00000070038)	hnrnpl2 (ENSDARG00000059303)	chchd2 (ENSDARG00000059304)
Clupeiformes	ANCESTRAL SPECIES	144					ENSGT00390000000417.a.a.b.b	ENSGT00390000007686.a	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000165978	ENSGT00390000018436.b	ENSGT00940000158344.a.a ##21	ENSGT00910000144115.b.bc.a	ENSGT01030000234642.a.b.b.d.b.c.a	ENSGT00940000159610	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT01090000260005.a.b.a.b.b.i	ENSGT00390000017267 #16	ENSGT00390000012388	ENSGT00940000167100.b	ENSGT00940000160903	ENSGT00940000156340.b	ENSGT00940000166189	ENSGT00940000160984	ENSGT00940000166134	ENSGT00940000156163.i.a	ENSGT00940000159690.a	ENSGT00890000139503	ENSGT00940000157806.e
Denticle herring	MODERN SPECIES	4	ENSDCDG00000032632	DMWD (ENSDCDG00000032629)	ENSDCDG00000032597	eif3k (ENSDCDG00000032588)	zgc:85932 (ENSDCDG00000032586)	actn4 (ENSDCDG00000032204)	ENSDCDG00000032153	slc8a2b (ENSDCDG00000031942) ##21	srsf7a (ENSDCDG00000031915)	hnrnpl2 (ENSDCDG00000031696)	ech1 (ENSDCDG00000031629)	ech1 (ENSDCDG00000031621)	ech1 (ENSDCDG00000031320)	ENSDCDG00000031302	ENSDCDG00000031298	meis3 (ENSDCDG00000031190) #22	ENSDCDG00000031174	sirt2 (ENSDCDG00000030152)	ENSDCDG00000030103	GJD2 (ENSDCDG00000030101)	nop53 (ENSDCDG00000030098) #16	ENSDCDG00000030094	ENSDCDG00000030091	ENSDCDG00000030083	ENSDCDG00000030069	tsku (ENSDCDG00000030064)	gucy2f (ENSDCDG00000029856)	serpinh1b (ENSDCDG00000029832)	GDPD5 (ENSDCDG00000029821)	hspa13 (ENSDCDG00000029814)	samsn1a (ENSDCDG00000029809)
Osteoglossiformes	ANCESTRAL SPECIES	81	ENSGT00530000063950.a.b #25	ENSGT00940000159792.C	ENSGT00940000166340	ENSGT00940000166085	ENSGT00390000000417.a.a.b.b	ENSGT00390000007686.a	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000165978	ENSGT00940000155548.vb	ENSGT00390000018436.b	ENSGT00940000158344.a.a ##21	ENSGT01030000234642.a.b.b.d.b.c.a	ENSGT00940000159610	ENSGT00940000160281	ENSGT00940000161057 #22	ENSGT00940000154866.A	ENSGT00940000157514.a	ENSGT00940000160500
P. kingsleyae	MODERN SPECIES	130	zgc:152863 (ENSPKIG00000007246)	hif1al (ENSPKIG00000007313)	ENSPKIG00000007424	DMWD (ENSPKIG00000007462)	ENSPKIG00000007489	ENSPKIG00000007516	eif3k (ENSPKIG00000007558)	zgc:85932 (ENSPKIG00000007621)	actn4 (ENSPKIG00000007802)	ENSPKIG00000008030	slc8a2b (ENSPKIG00000008069) ##21	srsf7a (ENSPKIG00000008209)	hnrnpl2 (ENSPKIG00000008277)	ech1 (ENSPKIG00000008358)	ENSPKIG00000008400	meis3 (ENSPKIG00000008427) #22	ENSPKIG00000008459	sirt2 (ENSPKIG00000008494)	dmac2 (ENSPKIG00000008562)	ENSPKIG00000008607	apoa1b (ENSPKIG00000008680)	bace1 (ENSPKIG00000008713)	pcsk7 (ENSPKIG00000008783)	tagln (ENSPKIG00000008895)	ENSPKIG00000008925	ENSPKIG00000008958
Asian bonytongue	MODERN SPECIES	1	zgc:152863 (ENSSFOG00015006509)	hif1al (ENSSFOG00015006520)	ENSSFOG00015006533	DMWD (ENSSFOG00015028542)	ENSSFOG00015006561	eif3k (ENSSFOG00015006575)	zgc:85932 (ENSSFOG00015006611)	actn4 (ENSSFOG00015006630)	ENSSFOG00015028067	ENSSFOG00015006718	slc8a2b (ENSSFOG00015006736) ##21	srsf7a (ENSSFOG00015006796)	hnrnpl2 (ENSSFOG00015006828)	ech1 (ENSSFOG00015006910)	ENSSFOG00015006923	meis3 (ENSSFOG00015006931) #22	ENSSFOG00015006973	sirt2 (ENSSFOG00015006983)	dmac2 (ENSSFOG00015007022)	ENSSFOG00015007028	si:ch1073-429i10.3 (ENSSFOG00015003112)	ENSSFOG00015024886	nop53 (ENSSFOG00015007062) #16	GJD2 (ENSSFOG00015007095)	nfkbib (ENSSFOG00015029151)	psma6l (ENSSFOG00015007124)	sars2 (ENSSFOG00015007160)	si:dkey-260j18.2 (ENSSFOG00015025327)	slc5a2 (ENSSFOG00015007244)	fbxo46 (ENSSFOG00015007577)	ENSSFOG00015032685
Spotted gar	MODERN SPECIES	658	pak4 (ENSLOCG00000014365)	zgc:152863 (ENSLOCG00000014363)	nccrp1 (ENSLOCG00000014359)	hif1al (ENSLOCG00000014356)	ENSLOCG00000014353	DMWD (ENSLOCG00000014351)	ENSLOCG00000014339	eif3k (ENSLOCG00000014336)	zgc:85932 (ENSLOCG00000014328)	ENSLOCG00000014320	ENSLOCG00000014319	slc8a2a (ENSLOCG00000014315) #21	srsf7a (ENSLOCG00000014314)	hnrnpl (ENSLOCG00000014311)	PRSS16 (ENSLOCG00000014309)	meis3 (ENSLOCG00000014306) #22	ENSLOCG00000014303	ENSLOCG00000014300	sirt2 (ENSLOCG00000014292)	kptn (ENSLOCG00000014286) #20	dmac2 (ENSLOCG00000014282)	ENSLOCG00000014276	RYR1 (ENSLOCG00000014248)	ENSLOCG00000014247	RASGRP4 (ENSLOCG00000014243)	HNRNPUL1 (ENSLOCG00000014236)	opa3 (ENSLOCG00000014233)	ENSLOCG00000014231	ENSLOCG00000014229	ENSLOCG00000014228	RSPH6A (ENSLOCG00000014226)