Glires	ANCESTRAL SPECIES	6	ENSGT01030000234606.a.b.d	ENSGT00940000160506	ENSGT00940000162766	ENSGT00940000163003	ENSGT00940000154432 #7	ENSGT00940000163805 #12	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT00970000193421.A #34	ENSGT00940000159485 #36	ENSGT00390000017583 #37	ENSGT00950000183095.a.b.a.b.a
Rodentia	ANCESTRAL SPECIES	8	ENSGT00940000160506	ENSGT00940000162766	ENSGT00940000163003	ENSGT00940000154432.n #7	ENSGT00940000163805 #12	ENSGT00940000154432.m.a ##7	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT00970000193421.A #34	ENSGT00940000159485 #36	ENSGT00390000017583 #37	ENSGT00950000183095.a.b.a.b.a
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000160506	ENSGT00940000162766	ENSGT00940000163003	ENSGT00940000154432.n #7	ENSGT00940000163805 #12	ENSGT00940000154432.m.a ##7	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT00970000193421.A #34	ENSGT00940000159485 #36	ENSGT00390000017583 #37	ENSGT00950000183095.a.b.a.b.a
Sciuridae	ANCESTRAL SPECIES	5			ENSGT00940000163805 #12	ENSGT00940000162766	ENSGT00940000163003	ENSGT00940000154432.n #7	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT00970000193421.A #34	ENSGT00940000159485 #36	ENSGT00390000017583 #37	ENSGT00950000183095.a.b.a.b.a.j
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005015636 #7	ENSSVLG00005015448 #8	ENSSVLG00005014930 #9	ENSSVLG00005014859 #10	ENSSVLG00005014702 #11	ENSSVLG00005014636 #12	CRX (ENSSVLG00005014575) #13	SELENOW (ENSSVLG00005014510) #14	NOP53 (ENSSVLG00005014437) #15	EHD2 (ENSSVLG00005014364) #16	BICRA (ENSSVLG00005013976) #17	ZNF541 (ENSSVLG00005013491) #18	NAPA (ENSSVLG00005012991) #19	KPTN (ENSSVLG00005012899) #20	SLC8A2 (ENSSVLG00005012674) #21	MEIS3 (ENSSVLG00005012542) #22	DHX34 (ENSSVLG00005012498) #23	C5AR2 (ENSSVLG00005012478) #24	C5AR1 (ENSSVLG00005012437) #25	ENSSVLG00005012324 #26	CCDC9 (ENSSVLG00005012213) #27	BBC3 (ENSSVLG00005012098) #28	SAE1 (ENSSVLG00005011951) #29	ZC3H4 (ENSSVLG00005011727) #30	TMEM160 (ENSSVLG00005011672) #31	NPAS1 (ENSSVLG00005011606) #32	ARHGAP35 (ENSSVLG00005011555) #33	AP2S1 (ENSSVLG00005011272) #34	ENSSVLG00005011219 #35	SLC1A5 (ENSSVLG00005010966) #36	FKRP (ENSSVLG00005010926) #37
Marmotini	ANCESTRAL SPECIES	7	ENSGT00940000154432.n.h.a.b.a.b.a #7	ENSGT00940000163003	ENSGT00940000154432.n.h.a.b.b #7	ENSGT00940000154432.n.h.a.a #7	ENSGT00940000163805 #12	ENSGT00940000154432.n.g #7	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT00970000193421.A #34	ENSGT00940000159485 #36	ENSGT00390000017583 #37	ENSGT00950000183095.a.b.a.b.a.j
Marmotini_b	ANCESTRAL SPECIES	22	ENSGT00940000154432.n.h.a.b.a.b.a #7	ENSGT00940000154432.n.h.a.b.a.a #7	ENSGT00940000163003	ENSGT00940000154432.n.h.a.b.b #7	ENSGT00940000154432.n.h.a.a #7	ENSGT00940000163805 #12	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT00970000193421.A #34	ENSGT00940000159485 #36	ENSGT00390000017583 #37	ENSGT00950000183095.a.b.a.b.a.j
Squirrel	MODERN SPECIES	264	ENSSTOG00000020452 #7	ENSSTOG00000023396 #7	ENSSTOG00000020676 #7	BSPH1 (ENSSTOG00000034649)	ENSSTOG00000025647 #7	ENSSTOG00000022010 #7	ENSSTOG00000021552 #12	CRX (ENSSTOG00000024356) #13	NOP53 (ENSSTOG00000022092) #15	ENSSTOG00000011087 #16	BICRA (ENSSTOG00000028398) #17	ZNF541 (ENSSTOG00000026879) #18	NAPA (ENSSTOG00000006983) #19	KPTN (ENSSTOG00000006963) #20	SLC8A2 (ENSSTOG00000020165) #21	MEIS3 (ENSSTOG00000028182) #22	DHX34 (ENSSTOG00000015831) #23	C5AR2 (ENSSTOG00000023346) #24	C5AR1 (ENSSTOG00000026678) #25	ENSSTOG00000005813 #27	SAE1 (ENSSTOG00000016251) #29	ZC3H4 (ENSSTOG00000016249) #30	TMEM160 (ENSSTOG00000024623) #31	NPAS1 (ENSSTOG00000003396) #32	ARHGAP35 (ENSSTOG00000011409) #33	SLC1A5 (ENSSTOG00000028576) #36	FKRP (ENSSTOG00000027896) #37	STRN4 (ENSSTOG00000025660)	PRKD2 (ENSSTOG00000026693)	ENSSTOG00000028905	GNG8 (ENSSTOG00000024152)
Arctic ground squirrel	MODERN SPECIES	455							CRX (ENSUPAG00010010106) #13	ENSUPAG00010010102 #14	NOP53 (ENSUPAG00010010094) #15	EHD2 (ENSUPAG00010010085) #16	BICRA (ENSUPAG00010010059) #17	ZNF541 (ENSUPAG00010010048) #18	NAPA (ENSUPAG00010010015) #19	KPTN (ENSUPAG00010010006) #20	SLC8A2 (ENSUPAG00010009969) #21	MEIS3 (ENSUPAG00010009940) #22	DHX34 (ENSUPAG00010009871) #23	C5AR2 (ENSUPAG00010009867) #24	C5AR1 (ENSUPAG00010009863) #25	INAFM1 (ENSUPAG00010009857)	CCDC9 (ENSUPAG00010009846) #27	BBC3 (ENSUPAG00010009844) #28	SAE1 (ENSUPAG00010009824) #29	ZC3H4 (ENSUPAG00010009793) #30	TMEM160 (ENSUPAG00010009790) #31	NPAS1 (ENSUPAG00010009764) #32	ARHGAP35 (ENSUPAG00010009739) #33	AP2S1 (ENSUPAG00010009722) #34	SLC1A5 (ENSUPAG00010009701) #36	STRN4 (ENSUPAG00010009670)	PRKD2 (ENSUPAG00010009657)
Alpin marmot	MODERN SPECIES	45	ENSMMMG00000012846 #7	ENSMMMG00000012847 #7	ENSMMMG00000012878 #7	ENSMMMG00000013050 #7	ENSMMMG00000013103 #12	ENSMMMG00000013119 #7	CRX (ENSMMMG00000013129) #13	SELENOW (ENSMMMG00000013140) #14	ENSMMMG00000013145 #15	EHD2 (ENSMMMG00000013147) #16	BICRA (ENSMMMG00000013156) #17	ZNF541 (ENSMMMG00000013251) #18	NAPA (ENSMMMG00000013273) #19	KPTN (ENSMMMG00000013277) #20	SLC8A2 (ENSMMMG00000013339) #21	MEIS3 (ENSMMMG00000013369) #22	DHX34 (ENSMMMG00000013402) #23	C5AR2 (ENSMMMG00000013488) #24	C5AR1 (ENSMMMG00000013493) #25	CCDC9 (ENSMMMG00000013499) #27	SAE1 (ENSMMMG00000013566) #29	ZC3H4 (ENSMMMG00000013587) #30	ENSMMMG00000013602 ##35	NPAS1 (ENSMMMG00000013606) #32	ARHGAP35 (ENSMMMG00000013646) #33	AP2S1 (ENSMMMG00000013659) #34	SLC1A5 (ENSMMMG00000013678) #36	FKRP (ENSMMMG00000013696) #37	STRN4 (ENSMMMG00000013698)	PRKD2 (ENSMMMG00000013741)	ENSMMMG00000013782
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT01030000234606.a.b.d	ENSGT00940000160506	ENSGT00940000162766	ENSGT00940000163805 #12	ENSGT00940000154432.m.a.b ##7	ENSGT00940000154432.m.a.a ##7	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT00970000193421.A #34	ENSGT00940000159485 #36	ENSGT00390000017583 #37	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b
Hystricomorpha_a	ANCESTRAL SPECIES	39							ENSGT00940000154432.m.a.a ##7	ENSGT00940000161634 #13	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00940000167173	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT00970000193421.A #34	ENSGT00940000159485 #36	ENSGT00390000017583 #37	ENSGT00950000183095.a.b.a.b.a
Guinea pig	MODERN SPECIES	80					Std1 (ENSCPOG00000003036) ##7	Std2 (ENSCPOG00000034234) ##7	ENSCPOG00000034667 ##7	CRX (ENSCPOG00000036687) #13	NOP53 (ENSCPOG00000015665) #15	EHD2 (ENSCPOG00000026417) #16	BICRA (ENSCPOG00000015610) #17	ZNF541 (ENSCPOG00000020622) #18	NAPA (ENSCPOG00000010617) #19	KPTN (ENSCPOG00000010615) #20	SLC8A2 (ENSCPOG00000010035) #21	MEIS3 (ENSCPOG00000026589) #22	DHX34 (ENSCPOG00000006510) #23	C5AR2 (ENSCPOG00000010536) #24	C5AR1 (ENSCPOG00000030913) #25	INAFM1 (ENSCPOG00000034661)	ENSCPOG00000008209	SAE1 (ENSCPOG00000021581) #29	ZC3H4 (ENSCPOG00000036659) #30	TMEM160 (ENSCPOG00000015280) #31	NPAS1 (ENSCPOG00000023069) #32	ARHGAP35 (ENSCPOG00000013236) #33	AP2S1 (ENSCPOG00000026801) #34	SLC1A5 (ENSCPOG00000004326) #36	FKRP (ENSCPOG00000036590) #37	STRN4 (ENSCPOG00000001053)	PRKD2 (ENSCPOG00000003294)
Hystricomorpha_b	ANCESTRAL SPECIES	49								ENSGT00940000161634 #13	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.g #25	ENSGT00940000167173	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT00970000193421.A #34	ENSGT00940000159485 #36	ENSGT00390000017583 #37	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b
Long-tailed chinchilla	MODERN SPECIES	281								CRX (ENSCLAG00000001963) #13	NOP53 (ENSCLAG00000001860) #15	EHD2 (ENSCLAG00000001756) #16	BICRA (ENSCLAG00000000673) #17	ZNF541 (ENSCLAG00000001489) #18	NAPA (ENSCLAG00000001379) #19	KPTN (ENSCLAG00000001346) #20	SLC8A2 (ENSCLAG00000000972) #21	MEIS3 (ENSCLAG00000000719) #22	DHX34 (ENSCLAG00000000906) #23	C5AR1 (ENSCLAG00000001064) #25	ENSCLAG00000000680	BBC3 (ENSCLAG00000000578) #28	SAE1 (ENSCLAG00000000507) #29	ENSCLAG00000000483	ZC3H4 (ENSCLAG00000001032) #30	TMEM160 (ENSCLAG00000000918) #31	NPAS1 (ENSCLAG00000000717) #32	ARHGAP35 (ENSCLAG00000002385) #33	AP2S1 (ENSCLAG00000002250) #34	ENSCLAG00000002077 #36	FKRP (ENSCLAG00000001845) #37	STRN4 (ENSCLAG00000001542)	PRKD2 (ENSCLAG00000001395)
Degu	MODERN SPECIES	238								CRX (ENSODEG00000006452) #13	NOP53 (ENSODEG00000006707) #15	EHD2 (ENSODEG00000006641) #16	BICRA (ENSODEG00000009243) #17	ZNF541 (ENSODEG00000005850) #18	NAPA (ENSODEG00000008511) #19	ENSODEG00000009127 #20	SLC8A2 (ENSODEG00000007313) #21	MEIS3 (ENSODEG00000006485) #22	DHX34 (ENSODEG00000006333) #23	ENSODEG00000008542	ENSODEG00000009476	BBC3 (ENSODEG00000006470) #28	ENSODEG00000006581 #29	ZC3H4 (ENSODEG00000008320) #30	TMEM160 (ENSODEG00000009538) #31	NPAS1 (ENSODEG00000006878) #32	ARHGAP35 (ENSODEG00000007178) #33	AP2S1 (ENSODEG00000006649) #34	SLC1A5 (ENSODEG00000007341) #36	FKRP (ENSODEG00000019605) #37	STRN4 (ENSODEG00000009103)	PRKD2 (ENSODEG00000006559)	ENSODEG00000006767
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000015393	ELSPBP1 (ENSHGLG00000015441)	ENSHGLG00000015622 #12	ENSHGLG00000018150 ##7	SULT2A1 (ENSHGLG00000013462) ##7	ENSHGLG00000034800	ENSHGLG00000048960 ##7	CRX (ENSHGLG00000013944) #13	ENSHGLG00000037909 #14	NOP53 (ENSHGLG00000018240) #15	EHD2 (ENSHGLG00000017825) #16	ZNF541 (ENSHGLG00000017589) #18	NAPA (ENSHGLG00000017294) #19	KPTN (ENSHGLG00000013757) #20	SLC8A2 (ENSHGLG00000017722) #21	MEIS3 (ENSHGLG00000018600) #22	DHX34 (ENSHGLG00000004917) #23	C5AR2 (ENSHGLG00000045362) #24	C5AR1 (ENSHGLG00000005545) #25	CCDC9 (ENSHGLG00000006240) #27	BBC3 (ENSHGLG00000050947) #28	SAE1 (ENSHGLG00000007950) #29	ZC3H4 (ENSHGLG00000008600) #30	TMEM160 (ENSHGLG00000009284) #31	NPAS1 (ENSHGLG00000009357) #32	ARHGAP35 (ENSHGLG00000010970) #33	AP2S1 (ENSHGLG00000018471) #34	SLC1A5 (ENSHGLG00000013744) #36	FKRP (ENSHGLG00000017783) #37	STRN4 (ENSHGLG00000015771)	PRKD2 (ENSHGLG00000017425)
Rodentia_B	ANCESTRAL SPECIES	20	ENSGT00940000157783	ENSGT01030000234606.a.b.d	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000163805 #12	ENSGT00940000154432.m.a ##7	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00940000167173	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT00970000193421.A #34	ENSGT00940000159485 #36	ENSGT00390000017583 #37
Myomorpha	ANCESTRAL SPECIES	20	ENSGT01030000234606.a.b.d	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000163805 #12	ENSGT00940000154432.m.b ##7	ENSGT00940000154432.m.a ##7	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT00970000193421.A #34	ENSGT00940000159485 #36	ENSGT00390000017583 #37	ENSGT00950000183095.a.b.a.b.a
Muroidea	ANCESTRAL SPECIES	18	ENSGT01030000234606.a.b.d	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000163805 #12	ENSGT00940000154432.m.b ##7	ENSGT00940000154432.m.a ##7	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT00970000193421.A #34	ENSGT00940000159485 #36	ENSGT00390000017583 #37	ENSGT00950000183095.a.b.a.b.a
Muroidea_A	ANCESTRAL SPECIES	20	ENSGT00940000157783	ENSGT01030000234606.a.b.d	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000163805 #12	ENSGT00940000154432.m.a.c ##7	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F	ENSGT00970000193421.A #34
Murinae	ANCESTRAL SPECIES	19	ENSGT00940000157783	ENSGT01030000234606.a.b.d	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000163805 #12	ENSGT00940000154432.m.a.c ##7	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F	ENSGT00970000193421.A #34
Mus	ANCESTRAL SPECIES		ENSGT00940000157783	ENSGT01030000234606.a.b.d	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000163805 #12	ENSGT00940000154432.m.a.c ##7	ENSGT00940000161634 #13	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F	ENSGT00970000193421.A #34
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000160506	ENSGT00940000163003	ENSGT00940000163805 #12	ENSGT00940000154432.m.a.c.c ##7	ENSGT00390000000605.B.a	ENSGT00940000161634 #13	ENSGT00800000124482	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F.c	ENSGT00970000193421.A #34
Mus_B	ANCESTRAL SPECIES		ENSGT00940000154432.m.a.c.c.b ##7	ENSGT00940000154432.m.a.c.d ##7	ENSGT00390000000605.A	ENSGT00940000154432.m.b ##7	ENSGT00390000000605.B.a.a	ENSGT00940000161634 #13	ENSGT00800000124482.b.a	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F.c	ENSGT00970000193421.A #34
Mouse	MODERN SPECIES	16	Obox7 (ENSMUSG00000055942)	Obox2 (ENSMUSG00000074369)	Obox1 (ENSMUSG00000054310)	Obox3 (ENSMUSG00000066772)	Obox5 (ENSMUSG00000074366)	Obox6 (ENSMUSG00000041583)	Crx (ENSMUSG00000041578) #13	Selenow (ENSMUSG00000041571) #14	Nop53 (ENSMUSG00000041560) #15	Ehd2 (ENSMUSG00000074364) #16	Bicra (ENSMUSG00000070808) #17	Zfp541 (ENSMUSG00000078796) #18	Napa (ENSMUSG00000006024) #19	Kptn (ENSMUSG00000006021) #20	Slc8a2 (ENSMUSG00000030376) #21	Meis3 (ENSMUSG00000041420) #22	Dhx34 (ENSMUSG00000006019) #23	C5ar2 (ENSMUSG00000074361) #24	C5ar1 (ENSMUSG00000049130) #25	Inafm1 (ENSMUSG00000091811)	Ccdc9 (ENSMUSG00000041375) #27	Bbc3 (ENSMUSG00000002083) #28	Sae1 (ENSMUSG00000052833) #29	Zc3h4 (ENSMUSG00000059273) #30	Tmem160 (ENSMUSG00000019158) #31	Npas1 (ENSMUSG00000001988) #32	Arhgap35 (ENSMUSG00000058230) #33	Ceacam15 (ENSMUSG00000078795)	Ceacam9 (ENSMUSG00000007209)	Ap2s1 (ENSMUSG00000008036) #34	Slc1a5 (ENSMUSG00000001918) #36
Mus_C	ANCESTRAL SPECIES	15	ENSGT00940000154432.m.a.c.d ##7	ENSGT00390000000605.A	ENSGT00940000154432.m.b ##7	ENSGT01030000234553.b.b.c.a.a.b.b.a.b.b	ENSGT00390000000605.B.a.a	ENSGT00940000161634 #13	ENSGT00800000124482.b.a	ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F.c	ENSGT00970000193421.A #34
Steppe mouse	MODERN SPECIES	2772					Obox6 (ENSMSIG00000018548)	Crx (ENSMSIG00000018526) #13	ENSMSIG00000018513	Selenow (ENSMSIG00000018481) #14	Nop53 (ENSMSIG00000018430) #15	Ehd2 (ENSMSIG00000018416) #16	Bicra (ENSMSIG00000018350) #17	Zfp541 (ENSMSIG00000018222) #18	Napa (ENSMSIG00000018190) #19	Kptn (ENSMSIG00000018154) #20	Slc8a2 (ENSMSIG00000018129) #21	Meis3 (ENSMSIG00000018072) #22	Dhx34 (ENSMSIG00000017946) #23	C5ar2 (ENSMSIG00000017934) #24	C5ar1 (ENSMSIG00000017926) #25	Ccdc9 (ENSMSIG00000017868) #27	ENSMSIG00000017856 #28	Sae1 (ENSMSIG00000017811) #29	Zc3h4 (ENSMSIG00000017751) #30	Tmem160 (ENSMSIG00000017740) #31	Npas1 (ENSMSIG00000017698) #32	Arhgap35 (ENSMSIG00000017677) #33	ENSMSIG00000017666	Ceacam15 (ENSMSIG00000017658)	ENSMSIG00000017649	ENSMSIG00000017638 #34
Ryukyu mouse	MODERN SPECIES	16	MGP_CAROLIEiJ_G0029210 ##7	Obox8 (MGP_CAROLIEiJ_G0029211)	Sult2a8 (MGP_CAROLIEiJ_G0029212) ##7	MGP_CAROLIEiJ_G0029213 ##7	Obox6 (MGP_CAROLIEiJ_G0029214)	Crx (MGP_CAROLIEiJ_G0029215) #13	MGP_CAROLIEiJ_G0029216	MGP_CAROLIEiJ_G0029217 #14	Nop53 (MGP_CAROLIEiJ_G0029218) #15	Ehd2 (MGP_CAROLIEiJ_G0029219) #16	Bicra (MGP_CAROLIEiJ_G0029220) #17	Zfp541 (MGP_CAROLIEiJ_G0029221) #18	Napa (MGP_CAROLIEiJ_G0029222) #19	Kptn (MGP_CAROLIEiJ_G0029223) #20	Slc8a2 (MGP_CAROLIEiJ_G0029224) #21	Meis3 (MGP_CAROLIEiJ_G0029225) #22	Dhx34 (MGP_CAROLIEiJ_G0029226) #23	C5ar2 (MGP_CAROLIEiJ_G0029227) #24	C5ar1 (MGP_CAROLIEiJ_G0029228) #25	Inafm1 (MGP_CAROLIEiJ_G0029229)	Ccdc9 (MGP_CAROLIEiJ_G0029230) #27	Bbc3 (MGP_CAROLIEiJ_G0029231) #28	Sae1 (MGP_CAROLIEiJ_G0029232) #29	MGP_CAROLIEiJ_G0029233 #30	Tmem160 (MGP_CAROLIEiJ_G0029234) #31	Npas1 (MGP_CAROLIEiJ_G0029235) #32	Arhgap35 (MGP_CAROLIEiJ_G0029236) #33	Ceacam15 (MGP_CAROLIEiJ_G0029237)	Ceacam9 (MGP_CAROLIEiJ_G0029238)	Ap2s1 (MGP_CAROLIEiJ_G0029239) #34	Slc1a5 (MGP_CAROLIEiJ_G0029240) #36
Shrew mouse	MODERN SPECIES	10	Zswim9 (MGP_PahariEiJ_G0021066)	Lig1 (MGP_PahariEiJ_G0021067)	Pla2g4c (MGP_PahariEiJ_G0021068)	Cabp5 (MGP_PahariEiJ_G0021069)	Bsph1 (MGP_PahariEiJ_G0021070)	MGP_PahariEiJ_G0021071 #12	Crx (MGP_PahariEiJ_G0021072) #13	MGP_PahariEiJ_G0021073 #14	MGP_PahariEiJ_G0021074 #15	Ehd2 (MGP_PahariEiJ_G0021075) #16	Bicra (MGP_PahariEiJ_G0021076) #17	Zfp541 (MGP_PahariEiJ_G0021077) #18	Napa (MGP_PahariEiJ_G0021078) #19	Kptn (MGP_PahariEiJ_G0021079) #20	Slc8a2 (MGP_PahariEiJ_G0021080) #21	Meis3 (MGP_PahariEiJ_G0021081) #22	Dhx34 (MGP_PahariEiJ_G0021082) #23	C5ar2 (MGP_PahariEiJ_G0021083) #24	C5ar1 (MGP_PahariEiJ_G0021084) #25	Inafm1 (MGP_PahariEiJ_G0021085)	Ccdc9 (MGP_PahariEiJ_G0021086) #27	Bbc3 (MGP_PahariEiJ_G0021087) #28	Sae1 (MGP_PahariEiJ_G0021088) #29	Zc3h4 (MGP_PahariEiJ_G0021089) #30	Tmem160 (MGP_PahariEiJ_G0021090) #31	Npas1 (MGP_PahariEiJ_G0021091) #32	Arhgap35 (MGP_PahariEiJ_G0021092) #33	Ceacam15 (MGP_PahariEiJ_G0021093)	Ceacam9 (MGP_PahariEiJ_G0021094)	Ap2s1 (MGP_PahariEiJ_G0021095) #34	Slc1a5 (MGP_PahariEiJ_G0021096) #36
Rat	MODERN SPECIES		Sult2a2 (ENSRNOG00000062869) ##7	ENSRNOG00000066824	AABR07002622.1 (ENSRNOG00000038276)	Obox1 (ENSRNOG00000066811)	Crx (ENSRNOG00000013890) #13	Crxos1 (ENSRNOG00000038251)	LOC100360843 (ENSRNOG00000033146)	LOC100364427 (ENSRNOG00000062534)	Rpl9 (ENSRNOG00000028449)	Nop53 (ENSRNOG00000013023) #15	Ehd2 (ENSRNOG00000011346) #16	Bicra (ENSRNOG00000011262) #17	Zfp541 (ENSRNOG00000021800) #18	Napa (ENSRNOG00000001494) #19	Slc8a2 (ENSRNOG00000001492) #21	Meis3 (ENSRNOG00000021390) #22	Dhx34 (ENSRNOG00000047575) #23	AABR07002627.1 (ENSRNOG00000060587)	C5ar2 (ENSRNOG00000049028) #24	ENSRNOG00000066925	Inafm1 (ENSRNOG00000048848) #27	Bbc3 (ENSRNOG00000062473) #28	Sae1 (ENSRNOG00000015128) #29	Zc3h4 (ENSRNOG00000015229) #30	Tmem160 (ENSRNOG00000015304) #31	Npas1 (ENSRNOG00000015376) #32	Arhgap35 (ENSRNOG00000015852) #33	Gng5 (ENSRNOG00000063636)	LOC102550403 (ENSRNOG00000065825)	LOC108349752 (ENSRNOG00000028617)	Ceacam9 (ENSRNOG00000046915)
Cricetidae	ANCESTRAL SPECIES	29								ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F	ENSGT00970000193421.A #34
Cricetidae_B	ANCESTRAL SPECIES	60								ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT01100000263479.D.a.d.a.a	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F	ENSGT00970000193421.A #34
Northern American deer mouse	MODERN SPECIES		Ethe1 (ENSPEMG00000023092)	Phldb3 (ENSPEMG00000022660)	Lypd3 (ENSPEMG00000021920)	Tex101 (ENSPEMG00000021573)	Cd177 (ENSPEMG00000022001)	ENSPEMG00000027693	ENSPEMG00000031382	Selenow (ENSPEMG00000005090) #14	Nop53 (ENSPEMG00000006856) #15	Ehd2 (ENSPEMG00000024916) #16	Bicra (ENSPEMG00000008834) #17	Zfp541 (ENSPEMG00000015026) #18	Napa (ENSPEMG00000009721) #19	Kptn (ENSPEMG00000000792) #20	Slc8a2 (ENSPEMG00000002691) #21	Meis3 (ENSPEMG00000005978) #22	Dhx34 (ENSPEMG00000017613) #23	C5ar2 (ENSPEMG00000010321) #24	C5ar1 (ENSPEMG00000001838) #25	Inafm1 (ENSPEMG00000009541)	Ccdc9 (ENSPEMG00000015166) #27	Bbc3 (ENSPEMG00000014228) #28	Sae1 (ENSPEMG00000012499) #29	Zc3h4 (ENSPEMG00000009762) #30	Tmem160 (ENSPEMG00000012479) #31	Npas1 (ENSPEMG00000014696) #32	Arhgap35 (ENSPEMG00000017349) #33	ENSPEMG00000031358	Ceacam15 (ENSPEMG00000016683)	ENSPEMG00000008534	Ceacam9 (ENSPEMG00000003127)
Prairie vole	MODERN SPECIES	354	Slc27a5 (ENSMOCG00000004298)	Zbtb45 (ENSMOCG00000001388)	Trim28 (ENSMOCG00000015909)	Chmp2a (ENSMOCG00000003404)	Ube2m (ENSMOCG00000016295)	Mzf1 (ENSMOCG00000011386)	Crx (ENSMOCG00000020933) #13	ENSMOCG00000017884	Nop53 (ENSMOCG00000008367) #15	Ehd2 (ENSMOCG00000007010) #16	Bicra (ENSMOCG00000019348) #17	Zfp541 (ENSMOCG00000021811) #18	Napa (ENSMOCG00000006244) #19	ENSMOCG00000013711 #20	Slc8a2 (ENSMOCG00000005717) #21	Meis3 (ENSMOCG00000008970) #22	Dhx34 (ENSMOCG00000016843) #23	C5ar2 (ENSMOCG00000004764) #24	Ccdc9 (ENSMOCG00000020124) #27	Bbc3 (ENSMOCG00000017283) #28	ENSMOCG00000016346 #29	Zc3h4 (ENSMOCG00000006492) #30	Tmem160 (ENSMOCG00000016966) #31	Npas1 (ENSMOCG00000014578) #32	Arhgap35 (ENSMOCG00000015867) #33	Ceacam9 (ENSMOCG00000018285)	Ap2s1 (ENSMOCG00000019574) #34	Slc1a5 (ENSMOCG00000009762) #36	Fkrp (ENSMOCG00000022172) #37	Strn4 (ENSMOCG00000000602)	Prkd2 (ENSMOCG00000004684)
Cricetinae	ANCESTRAL SPECIES	49								ENSGT00940000161069 #14	ENSGT00390000017267 #15	ENSGT00940000159256 #16	ENSGT00940000159112.b #17	ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00550000076229	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT01100000263479.D.a.d.a.b	ENSGT01100000263479.F.a	ENSGT00970000193421.A #34	ENSGT00940000159485 #36
Chinese hamster chok1gshd	MODERN SPECIES	341								ENSCGRG00001019284 #14	Nop53 (ENSCGRG00001019033) #15	Ehd2 (ENSCGRG00001018635) #16	Bicra (ENSCGRG00001017944) #17	Zfp541 (ENSCGRG00001016947) #18	Napa (ENSCGRG00001004279) #19	Kptn (ENSCGRG00001017146) #20	Slc8a2 (ENSCGRG00001013525) #21	Meis3 (ENSCGRG00001010748) #22	ENSCGRG00001017077 #23	Dhx34 (ENSCGRG00001014694) #23	C5ar2 (ENSCGRG00001013288) #24	C5ar1 (ENSCGRG00001012882) #25	Inafm1 (ENSCGRG00001010104)	Ccdc9 (ENSCGRG00001007536) #27	Bbc3 (ENSCGRG00001017224) #28	Sae1 (ENSCGRG00001016314) #29	Zc3h4 (ENSCGRG00001016116) #30	Tmem160 (ENSCGRG00001014723) #31	Npas1 (ENSCGRG00001013611) #32	Arhgap35 (ENSCGRG00001013301) #33	Ceacam15 (ENSCGRG00001017353)	Ceacam9 (ENSCGRG00001017245)	Ap2s1 (ENSCGRG00001015937) #34
Golden Hamster	MODERN SPECIES	836								Selenow (ENSMAUG00000014624) #14	Nop53 (ENSMAUG00000012617) #15	Ehd2 (ENSMAUG00000010317) #16	Bicra (ENSMAUG00000015992) #17	Zfp541 (ENSMAUG00000012586) #18	Napa (ENSMAUG00000008333) #19	ENSMAUG00000000883 #20	Slc8a2 (ENSMAUG00000010121) #21	Meis3 (ENSMAUG00000014202) #22	Dhx34 (ENSMAUG00000013394) #23	C5ar2 (ENSMAUG00000006533) #24	C5ar1 (ENSMAUG00000003322) #25	ENSMAUG00000003963 #27	Bbc3 (ENSMAUG00000009202) #28	Sae1 (ENSMAUG00000007765) #29	ENSMAUG00000000957	Zc3h4 (ENSMAUG00000000068) #30	Tmem160 (ENSMAUG00000000893) #31	Npas1 (ENSMAUG00000001894) #32	Arhgap35 (ENSMAUG00000000172) #33	ENSMAUG00000009227	ENSMAUG00000008055	Ap2s1 (ENSMAUG00000019505) #34	Slc1a5 (ENSMAUG00000017083) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	501								Selenow (ENSNGAG00000001219) #14	Nop53 (ENSNGAG00000019894) #15	Ehd2 (ENSNGAG00000018699) #16	Bicra (ENSNGAG00000012259) #17	Zfp541 (ENSNGAG00000022695) #18	Napa (ENSNGAG00000000817) #19	ENSNGAG00000023937 #20	Slc8a2 (ENSNGAG00000011676) #21	Meis3 (ENSNGAG00000018810) #22	Dhx34 (ENSNGAG00000012974) #23	C5ar2 (ENSNGAG00000010859) #24	C5ar1 (ENSNGAG00000009652) #25	ENSNGAG00000007282	Bbc3 (ENSNGAG00000004788) #28	ENSNGAG00000001209 #29	Zc3h4 (ENSNGAG00000020090) #30	Tmem160 (ENSNGAG00000019488) #31	Npas1 (ENSNGAG00000018097) #32	Arhgap35 (ENSNGAG00000016819) #33	Hif3a (ENSNGAG00000014207)	Ppp5c (ENSNGAG00000012794)	Pnma8a (ENSNGAG00000008259)	Pnma8b (ENSNGAG00000008913)	ENSNGAG00000004089
Lesser Egyptian jerboa	MODERN SPECIES	257					ENSJJAG00000011866 ##7	Plekhf2 (ENSJJAG00000011954)	Crx (ENSJJAG00000014071) #13	Selenow (ENSJJAG00000007708) #14	Nop53 (ENSJJAG00000007854) #15	Ehd2 (ENSJJAG00000008621) #16	Bicra (ENSJJAG00000008900) #17	Zfp541 (ENSJJAG00000010932) #18	Napa (ENSJJAG00000011931) #19	ENSJJAG00000012597 #20	Slc8a2 (ENSJJAG00000013489) #21	Meis3 (ENSJJAG00000013989) #22	ENSJJAG00000013190
Kangaroo rat	MODERN SPECIES	475								Crx (ENSDORG00000027827) #13	ENSDORG00000016339 #15	Ehd2 (ENSDORG00000011700) #16	Bicra (ENSDORG00000025123) #17	Zfp541 (ENSDORG00000028161) #18	Napa (ENSDORG00000009995) #19	ENSDORG00000009993 #20	Slc8a2 (ENSDORG00000009991) #21	Meis3 (ENSDORG00000008441) #22	Dhx34 (ENSDORG00000008437) #23	C5ar1 (ENSDORG00000030050) #25	ENSDORG00000024050	ENSDORG00000029325	Sae1 (ENSDORG00000012199) #29	Zc3h4 (ENSDORG00000002726) #30	Tmem160 (ENSDORG00000002725) #31	Npas1 (ENSDORG00000002722) #32	Arhgap35 (ENSDORG00000001800) #33	Ap2s1 (ENSDORG00000015282) #34	Slc1a5 (ENSDORG00000008810) #36	Strn4 (ENSDORG00000005407)	Prkd2 (ENSDORG00000005405)	ENSDORG00000005404	Gng8 (ENSDORG00000005403)
Lagomorpha	ANCESTRAL SPECIES	135												ENSGT00940000160330 #18	ENSGT00390000005826.a.a #19	ENSGT00390000002548 #20	ENSGT00940000158344.b #21	ENSGT00940000161057 #22	ENSGT00940000158721 #23	ENSGT01100000263564.a.h #24	ENSGT01100000263564.a.g #25	ENSGT00530000063950.a.b #27	ENSGT00390000002767 #28	ENSGT00550000075007 #29	ENSGT00940000160011 #30	ENSGT00390000012863 #31	ENSGT00940000161295 #32	ENSGT01030000234635.a.b.a.b.b.a.b #33	ENSGT00940000159485 #36	ENSGT00390000017583 #37	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT00950000183181.B.b
Rabbit	MODERN SPECIES	568												ZNF541 (ENSOCUG00000000969) #18	NAPA (ENSOCUG00000000967) #19	KPTN (ENSOCUG00000024733) #20	ENSOCUG00000031820 #21	MEIS3 (ENSOCUG00000025760) #22	DHX34 (ENSOCUG00000014005) #23	C5AR2 (ENSOCUG00000025530) #24	C5AR1 (ENSOCUG00000022167) #25	CCDC9 (ENSOCUG00000013560) #27	BBC3 (ENSOCUG00000037839) #28	SAE1 (ENSOCUG00000024320) #29	ZC3H4 (ENSOCUG00000026069) #30	TMEM160 (ENSOCUG00000023097) #31	NPAS1 (ENSOCUG00000016061) #32	ARHGAP35 (ENSOCUG00000017126) #33	ENSOCUG00000039332	SLC1A5 (ENSOCUG00000009144) #36	FKRP (ENSOCUG00000000122) #37	STRN4 (ENSOCUG00000021418)	PRKD2 (ENSOCUG00000026784)
Pika	MODERN SPECIES	1283																MEIS3 (ENSOPRG00000011915) #22	ENSOPRG00000011872 #23	ENSOPRG00000011863 #24