Euteleostomi	ANCESTRAL SPECIES	184														ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000006612	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01050000244890.a.b.b	ENSGT00390000009194	ENSGT00400000022514	ENSGT00940000158259 #21	ENSGT00940000165754
Sarcopterygii	ANCESTRAL SPECIES	207														ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000006612	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000165754	ENSGT00940000158259 #21	ENSGT00400000022514	ENSGT00390000009194	ENSGT00630000089910 #14	ENSGT01050000244857.B.a #13
Tetrapoda	ANCESTRAL SPECIES	243											ENSGT00950000183207.a #28	ENSGT00940000159846 #27	ENSGT00940000161389 #26	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535
Amniota	ANCESTRAL SPECIES	71					ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT01030000234607.A.a.b.a ##20	ENSGT00940000161501	ENSGT00390000016168.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00940000157687	ENSGT01030000234856	ENSGT00940000158130	ENSGT00940000171891
Mammalia	ANCESTRAL SPECIES	4	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000156207.b	ENSGT00390000016226	ENSGT00390000006479	ENSGT00510000050353	ENSGT00940000162476	ENSGT00940000162620	ENSGT00940000155829
Theria	ANCESTRAL SPECIES		ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000156207.b	ENSGT00390000016226	ENSGT00390000006479	ENSGT00510000050353	ENSGT00940000162476	ENSGT00940000162620	ENSGT00940000155829
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000155153.A	ENSGT00940000156207.b	ENSGT00390000016226	ENSGT00390000006479	ENSGT00510000050353	ENSGT00940000162476	ENSGT00940000162620
Boreoeutheria	ANCESTRAL SPECIES	13	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000159509	ENSGT00940000159317 #36	ENSGT00940000162548 #35	ENSGT00940000163457 #34	ENSGT00940000161272 #33	ENSGT00940000162462
Euarchontoglires	ANCESTRAL SPECIES	13	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000163384
Primates	ANCESTRAL SPECIES	12	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00630000089910.ib.a ##14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000163384	ENSGT00940000161272 #33
Strepsirrhini	ANCESTRAL SPECIES	9	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000162462
Lemuriformes	ANCESTRAL SPECIES	4	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000162462
Mouse lemur	MODERN SPECIES	2	RHEB (ENSMICG00000033790) #7	ENSMICG00000031581 #8	CRYGN (ENSMICG00000008093) #9	WDR86 (ENSMICG00000035281) #10	NUB1 (ENSMICG00000004796) #11	SMARCD3 (ENSMICG00000004795) #12	CHPF2 (ENSMICG00000031520) #13	ABCF2 (ENSMICG00000004786) #14	IQCA1L (ENSMICG00000004778) #15	ASB10 (ENSMICG00000036188) #16	GBX1 (ENSMICG00000038356) #17	AGAP3 (ENSMICG00000004762) #18	TMUB1 (ENSMICG00000046312) #19	FASTK (ENSMICG00000004757) #20	SLC4A2 (ENSMICG00000004750) #21	CDK5 (ENSMICG00000004746) #22	ASIC3 (ENSMICG00000032157) #23	ABCB8 (ENSMICG00000004734) #24	ATG9B (ENSMICG00000004726) #25	NOS3 (ENSMICG00000004720) #26	KCNH2 (ENSMICG00000004711) #27	AOC1 (ENSMICG00000030675) #28	TMEM176A (ENSMICG00000008154) #29	TMEM176B (ENSMICG00000042311) #30	ENSMICG00000035983 #31	ENSMICG00000027282 #32	GIMAP1 (ENSMICG00000042332) #33	GIMAP2 (ENSMICG00000008145) #34	GIMAP6 (ENSMICG00000033278) #35	GIMAP4 (ENSMICG00000038028) #36	ENSMICG00000033393 #37
Lemuriformes_a	ANCESTRAL SPECIES	90	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000162462
Greater bamboo lemur	MODERN SPECIES	1011	PRKAG2 (ENSPSMG00000009945)	RHEB (ENSPSMG00000009847) #7	CRYGN (ENSPSMG00000009832) #9	WDR86 (ENSPSMG00000009828) #10	NUB1 (ENSPSMG00000009815) #11	SMARCD3 (ENSPSMG00000009707) #12	CHPF2 (ENSPSMG00000009586) #13	ABCF2 (ENSPSMG00000009569) ##14	IQCA1L (ENSPSMG00000009555) #15	ASB10 (ENSPSMG00000009546) #16	GBX1 (ENSPSMG00000009527) #17	AGAP3 (ENSPSMG00000009493) #18	TMUB1 (ENSPSMG00000009384) #19	FASTK (ENSPSMG00000009345) #20	SLC4A2 (ENSPSMG00000009119) #21	CDK5 (ENSPSMG00000008844) #22	ASIC3 (ENSPSMG00000008802) #23	ABCB8 (ENSPSMG00000008737) #24	ATG9B (ENSPSMG00000008576) #25	NOS3 (ENSPSMG00000008521) #26	KCNH2 (ENSPSMG00000008354) #27	AOC1 (ENSPSMG00000008258) #28	TMEM176A (ENSPSMG00000008248) #29	TMEM176B (ENSPSMG00000008221) #30	ENSPSMG00000008187 #32
Coquerels sifaka	MODERN SPECIES	885	PRKAG2 (ENSPCOG00000026814)	RHEB (ENSPCOG00000015977) #7	ENSPCOG00000024085 #9	WDR86 (ENSPCOG00000025519) #10	NUB1 (ENSPCOG00000028484) #11	SMARCD3 (ENSPCOG00000026843) #12	CHPF2 (ENSPCOG00000025933) #13	ENSPCOG00000008446 #14	IQCA1L (ENSPCOG00000019159) #15	ASB10 (ENSPCOG00000019571) #16	GBX1 (ENSPCOG00000023525) #17	AGAP3 (ENSPCOG00000021984) #18	TMUB1 (ENSPCOG00000016640) #19	FASTK (ENSPCOG00000028719) #20	SLC4A2 (ENSPCOG00000019926) #21	CDK5 (ENSPCOG00000025529) #22	ASIC3 (ENSPCOG00000023987) #23	ABCB8 (ENSPCOG00000020824) #24	ATG9B (ENSPCOG00000027768) #25	NOS3 (ENSPCOG00000016319) #26	KCNH2 (ENSPCOG00000026281) #27	AOC1 (ENSPCOG00000015517) #28	TMEM176A (ENSPCOG00000025404) #29	TMEM176B (ENSPCOG00000017342) #30	GIMAP5 (ENSPCOG00000016811) #32	GIMAP2 (ENSPCOG00000024391) #34	GIMAP6 (ENSPCOG00000027875) #35	GIMAP4 (ENSPCOG00000022284) #36	GIMAP8 (ENSPCOG00000015779)	ENSPCOG00000015354	ENSPCOG00000015332
Bushbaby	MODERN SPECIES	168	PRKAG2 (ENSOGAG00000008645)	RHEB (ENSOGAG00000008642) #7	CRYGN (ENSOGAG00000030127) #9	WDR86 (ENSOGAG00000030798) #10	NUB1 (ENSOGAG00000008637) #11	SMARCD3 (ENSOGAG00000028429) #12	CHPF2 (ENSOGAG00000016836) #13	ENSOGAG00000017216 ##14	IQCA1L (ENSOGAG00000017215) #15	ASB10 (ENSOGAG00000017212) #16	GBX1 (ENSOGAG00000029290) #17	AGAP3 (ENSOGAG00000017209) #18	TMUB1 (ENSOGAG00000026891) #19	FASTK (ENSOGAG00000001782) #20	SLC4A2 (ENSOGAG00000001778) #21	CDK5 (ENSOGAG00000001775) #22	ASIC3 (ENSOGAG00000027622) #23	ABCB8 (ENSOGAG00000001769) #24	ATG9B (ENSOGAG00000001767) #25	NOS3 (ENSOGAG00000001762) #26	KCNH2 (ENSOGAG00000007822) #27	AOC1 (ENSOGAG00000007821) #28	TMEM176A (ENSOGAG00000007820) #29	TMEM176B (ENSOGAG00000024384) #30	ENSOGAG00000024498 #33	ENSOGAG00000026916	GIMAP6 (ENSOGAG00000029466) #35	ENSOGAG00000032655 #33	ENSOGAG00000026794 #32	ENSOGAG00000009145 #32	GIMAP8 (ENSOGAG00000030330)
Haplorrhini	ANCESTRAL SPECIES	8	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000162462
Simiiformes	ANCESTRAL SPECIES	12	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000162462
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000155390.b
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000155390.b
Hominidae	ANCESTRAL SPECIES	11	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000155390.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000155390.b
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000155390.b
Pan	ANCESTRAL SPECIES	13	ENSGT00390000009004.ab.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000155390.b	ENSGT00940000162462
Bonobo	MODERN SPECIES	20	ENSPPAG00000040284	ENSPPAG00000027560 #7	CRYGN (ENSPPAG00000022114) #9	WDR86 (ENSPPAG00000030595) #10	NUB1 (ENSPPAG00000037575) #11	SMARCD3 (ENSPPAG00000039233) #12	CHPF2 (ENSPPAG00000017254) #13	ABCF2 (ENSPPAG00000014104) #14	IQCA1L (ENSPPAG00000026478) #15	ASB10 (ENSPPAG00000041189) #16	GBX1 (ENSPPAG00000037090) #17	AGAP3 (ENSPPAG00000029318) #18	TMUB1 (ENSPPAG00000035054) #19	FASTK (ENSPPAG00000042376) #20	SLC4A2 (ENSPPAG00000043617) #21	CDK5 (ENSPPAG00000034802) #22	ASIC3 (ENSPPAG00000037716) #23	ABCB8 (ENSPPAG00000031904) #24	ATG9B (ENSPPAG00000036051) #25	NOS3 (ENSPPAG00000039019) #26	ENSPPAG00000039401 #27	AOC1 (ENSPPAG00000035701) #28	TMEM176A (ENSPPAG00000014592) #29	TMEM176B (ENSPPAG00000035038) #30	ENSPPAG00000042001 #32	GIMAP2 (ENSPPAG00000009720) #34	GIMAP6 (ENSPPAG00000033178) #35	GIMAP4 (ENSPPAG00000039067) #36	GIMAP7 (ENSPPAG00000010179)	ENSPPAG00000041448	GIMAP8 (ENSPPAG00000038601)
Chimpanzee	MODERN SPECIES	618	ENSPTRG00000045744	ENSPTRG00000047231 #7	ENSPTRG00000044000 #9	WDR86 (ENSPTRG00000052085) #10	ENSPTRG00000045827 #11	ENSPTRG00000050051 #12	ENSPTRG00000049375 #13	ENSPTRG00000048152 #14	ENSPTRG00000047459 #15	ENSPTRG00000052303 #16	GBX1 (ENSPTRG00000019877) #17	AGAP3 (ENSPTRG00000019876) #18	TMUB1 (ENSPTRG00000028352) #19	FASTK (ENSPTRG00000019874) #20	SLC4A2 (ENSPTRG00000019873) #21	CDK5 (ENSPTRG00000019872) #22	ASIC3 (ENSPTRG00000034239) #23	ABCB8 (ENSPTRG00000019870) #24	ATG9B (ENSPTRG00000019869) #25	NOS3 (ENSPTRG00000019868) #26	KCNH2 (ENSPTRG00000019867) #27	ENSPTRG00000045385 #28	ENSPTRG00000044679 #29	ENSPTRG00000049537 #30	ENSPTRG00000048482	ENSPTRG00000028356 #32	ENSPTRG00000052806 #34	ENSPTRG00000045753 #35	ENSPTRG00000047736 #36	ENSPTRG00000051775	ENSPTRG00000051649
Human	MODERN SPECIES	19	WDR86 (ENSG00000187260) #10	NUB1 (ENSG00000013374) #11	SMARCD3 (ENSG00000082014) #12	CHPF2 (ENSG00000033100) #13	ABCF2 (ENSG00000033050) #14	ABCF2-H2BK1 (ENSG00000285292)	H2BK1 (ENSG00000285480)	IQCA1L (ENSG00000278685) #15	ASB10 (ENSG00000146926) #16	GBX1 (ENSG00000164900) #17	AGAP3 (ENSG00000133612) #18	TMUB1 (ENSG00000164897) #19	FASTK (ENSG00000164896) #20	ENSG00000288608	SLC4A2 (ENSG00000164889) #21	CDK5 (ENSG00000164885) #22	ASIC3 (ENSG00000213199) #23	ABCB8 (ENSG00000197150) #24	ATG9B (ENSG00000181652) #25	NOS3 (ENSG00000164867) #26	KCNH2 (ENSG00000055118) #27	AOC1 (ENSG00000002726) #28	TMEM176A (ENSG00000002933) #29	TMEM176B (ENSG00000106565) #30	GIMAP5 (ENSG00000196329) #32	GIMAP1-GIMAP5 (ENSG00000281887)	GIMAP1 (ENSG00000213203) #33	GIMAP2 (ENSG00000106560) #34	GIMAP6 (ENSG00000133561) #35	GIMAP4 (ENSG00000133574) #36	GIMAP7 (ENSG00000179144)
Gorilla	MODERN SPECIES	20	RHEB (ENSGGOG00000014675) #7	CRYGN (ENSGGOG00000014669) #9	ENSGGOG00000014552 #10	NUB1 (ENSGGOG00000014540) #11	SMARCD3 (ENSGGOG00000001089) #12	CHPF2 (ENSGGOG00000001088) #13	ABCF2 (ENSGGOG00000000314) #14	IQCA1L (ENSGGOG00000000312) #15	ASB10 (ENSGGOG00000000311) #16	ENSGGOG00000016925 #17	AGAP3 (ENSGGOG00000016916) #18	TMUB1 (ENSGGOG00000016913) #19	FASTK (ENSGGOG00000016906) #20	ENSGGOG00000037619	SLC4A2 (ENSGGOG00000016887) #21	CDK5 (ENSGGOG00000016879) #22	ASIC3 (ENSGGOG00000016869) #23	ABCB8 (ENSGGOG00000016858) #24	ATG9B (ENSGGOG00000016844) #25	NOS3 (ENSGGOG00000016825) #26	KCNH2 (ENSGGOG00000016814) #27	AOC1 (ENSGGOG00000002416) #28	TMEM176A (ENSGGOG00000016497) #29	TMEM176B (ENSGGOG00000016490) #30	ENSGGOG00000040664	ENSGGOG00000014216 #32	GIMAP2 (ENSGGOG00000022230) #34	GIMAP6 (ENSGGOG00000000613) #35	GIMAP4 (ENSGGOG00000002351) #36	GIMAP7 (ENSGGOG00000002349)	ENSGGOG00000037430
Orangutan	MODERN SPECIES	20	RHEB (ENSPPYG00000039172) #7	CRYGN (ENSPPYG00000018195) #9	ENSPPYG00000037386 #10	NUB1 (ENSPPYG00000018192) #11	SMARCD3 (ENSPPYG00000018191) #12	CHPF2 (ENSPPYG00000018190) #13	ABCF2 (ENSPPYG00000029382) #14	ENSPPYG00000032139	IQCA1L (ENSPPYG00000018189) #15	ASB10 (ENSPPYG00000039383) #16	GBX1 (ENSPPYG00000018188) #17	AGAP3 (ENSPPYG00000018187) #18	TMUB1 (ENSPPYG00000018186) #19	FASTK (ENSPPYG00000018185) #20	SLC4A2 (ENSPPYG00000018184) #21	CDK5 (ENSPPYG00000018183) #22	ASIC3 (ENSPPYG00000018181) #23	ABCB8 (ENSPPYG00000018180) #24	ATG9B (ENSPPYG00000018179) #25	NOS3 (ENSPPYG00000018178) #26	KCNH2 (ENSPPYG00000018177) #27	AOC1 (ENSPPYG00000018176) #28	TMEM176A (ENSPPYG00000018175) #29	TMEM176B (ENSPPYG00000018174) #30	GIMAP5 (ENSPPYG00000018173) #32	GIMAP1 (ENSPPYG00000039701) #33	GIMAP2 (ENSPPYG00000018172) #34	GIMAP6 (ENSPPYG00000040101) #35	GIMAP4 (ENSPPYG00000039270) #36	GIMAP7 (ENSPPYG00000018170)	GIMAP8 (ENSPPYG00000018169)
Gibbon	MODERN SPECIES	3	PRKAG2 (ENSNLEG00000004532)	RHEB (ENSNLEG00000004500) #7	ENSNLEG00000034693 #9	ENSNLEG00000004484 #10	NUB1 (ENSNLEG00000004440) #11	SMARCD3 (ENSNLEG00000004360) #12	CHPF2 (ENSNLEG00000004352) #13	ABCF2 (ENSNLEG00000004318) #14	IQCA1L (ENSNLEG00000030542) #15	ASB10 (ENSNLEG00000004293) #16	GBX1 (ENSNLEG00000004290) #17	AGAP3 (ENSNLEG00000004247) #18	TMUB1 (ENSNLEG00000004237) #19	FASTK (ENSNLEG00000004192) #20	SLC4A2 (ENSNLEG00000004155) #21	CDK5 (ENSNLEG00000004100) #22	ASIC3 (ENSNLEG00000004089) #23	ABCB8 (ENSNLEG00000004032) #24	ATG9B (ENSNLEG00000003946) #25	NOS3 (ENSNLEG00000003964) #26	KCNH2 (ENSNLEG00000003925) #27	AOC1 (ENSNLEG00000003920) #28	TMEM176A (ENSNLEG00000003891) #29	TMEM176B (ENSNLEG00000003859) #30	GIMAP5 (ENSNLEG00000003844) #32	GIMAP1 (ENSNLEG00000029987) #33	GIMAP2 (ENSNLEG00000003839) #34	ENSNLEG00000033769	GIMAP4 (ENSNLEG00000003833) #36	ENSNLEG00000031046	GIMAP8 (ENSNLEG00000003821)
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES	31	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805.a #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272.i #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000155390.b
Rhinopithecus	ANCESTRAL SPECIES	91	ENSGT00390000009004.ab.a.e	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805.a #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272.i #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000155390.b
Golden snub-nosed monkey	MODERN SPECIES	2192						SMARCD3 (ENSRROG00000038917) #12	CHPF2 (ENSRROG00000028268) #13	ABCF2 (ENSRROG00000041206) #14	IQCA1L (ENSRROG00000029027) #15	ASB10 (ENSRROG00000036220) #16	ENSRROG00000028498 #17	AGAP3 (ENSRROG00000032962) #18	TMUB1 (ENSRROG00000043362) #19	FASTK (ENSRROG00000042586) #20	SLC4A2 (ENSRROG00000023955) #21	CDK5 (ENSRROG00000033765) #22	ASIC3 (ENSRROG00000009869) #23	ABCB8 (ENSRROG00000038648) #24	ATG9B (ENSRROG00000043411) #25	NOS3 (ENSRROG00000034495) #26	KCNH2 (ENSRROG00000032294) #27	AOC1 (ENSRROG00000042308) #28	TMEM176A (ENSRROG00000035784) #29	TMEM176B (ENSRROG00000042127) #30	GIMAP5 (ENSRROG00000028817) #32	GIMAP1 (ENSRROG00000030188) #33
Black snub-nosed monkey	MODERN SPECIES	548				CRYGN (ENSRBIG00000043328) #9	WDR86 (ENSRBIG00000035531) #10	NUB1 (ENSRBIG00000025270) #11	SMARCD3 (ENSRBIG00000039785) #12	CHPF2 (ENSRBIG00000040529) #13	ABCF2 (ENSRBIG00000044834) #14	IQCA1L (ENSRBIG00000022993) #15	ASB10 (ENSRBIG00000006879) #16	AGAP3 (ENSRBIG00000032785) #18	TMUB1 (ENSRBIG00000034303) #19	FASTK (ENSRBIG00000030083) #20	SLC4A2 (ENSRBIG00000044628) #21	CDK5 (ENSRBIG00000036059) #22	ASIC3 (ENSRBIG00000034944) #23	ABCB8 (ENSRBIG00000002318) #24	ATG9B (ENSRBIG00000035699) #25	NOS3 (ENSRBIG00000040760) #26	KCNH2 (ENSRBIG00000033147) #27
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805.a #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272.i #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000155390.b
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805.a #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272.i #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000155390.b
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805.a #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272.i #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000155390.b
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805.a #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272.i #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000161272.j #33
Crab-eating macaque	MODERN SPECIES	13	ENSMFAG00000065450	PRKAG2 (ENSMFAG00000000670)	ENSMFAG00000049054 #9	WDR86 (ENSMFAG00000000892) #10	NUB1 (ENSMFAG00000033644) #11	SMARCD3 (ENSMFAG00000032295) #12	CHPF2 (ENSMFAG00000045967) #13	ABCF2 (ENSMFAG00000034542) #14	H2BK1 (ENSMFAG00000055679)	IQCA1L (ENSMFAG00000028789) #15	GBX1 (ENSMFAG00000036695) #17	AGAP3 (ENSMFAG00000034582) #18	TMUB1 (ENSMFAG00000045212) #19	FASTK (ENSMFAG00000041547) #20	SLC4A2 (ENSMFAG00000002821) #21	CDK5 (ENSMFAG00000002154) #22	ASIC3 (ENSMFAG00000001829) #23	ABCB8 (ENSMFAG00000037503) #24	NOS3 (ENSMFAG00000001883) #26	KCNH2 (ENSMFAG00000036134) #27	AOC1 (ENSMFAG00000044518) #28	ENSMFAG00000054170	TMEM176A (ENSMFAG00000001658) #29	TMEM176B (ENSMFAG00000044472) #30	GIMAP5 (ENSMFAG00000044951) #32	GIMAP1 (ENSMFAG00000055567) #33	GIMAP2 (ENSMFAG00000041785) #34	GIMAP6 (ENSMFAG00000043478) #35	ENSMFAG00000057766	GIMAP4 (ENSMFAG00000001041) #36	GIMAP7 (ENSMFAG00000036396)
Rhesus	MODERN SPECIES	13	CRYGN (ENSMMUG00000006249) #9	WDR86 (ENSMMUG00000006248) #10	NUB1 (ENSMMUG00000006244) #11	SMARCD3 (ENSMMUG00000006687) #12	CHPF2 (ENSMMUG00000006682) #13	ABCF2 (ENSMMUG00000006679) #14	H2BK1 (ENSMMUG00000049654)	IQCA1L (ENSMMUG00000054070) #15	ASB10 (ENSMMUG00000006672) #16	GBX1 (ENSMMUG00000043445) #17	AGAP3 (ENSMMUG00000009546) #18	ENSMMUG00000063645 #18	TMUB1 (ENSMMUG00000020466) #19	FASTK (ENSMMUG00000020459) #20	SLC4A2 (ENSMMUG00000020456) #21	CDK5 (ENSMMUG00000020451) #22	ASIC3 (ENSMMUG00000045082) #23	ABCB8 (ENSMMUG00000020442) #24	ATG9B (ENSMMUG00000054441) #25	NOS3 (ENSMMUG00000020437) #26	KCNH2 (ENSMMUG00000020436) #27	AOC1 (ENSMMUG00000020435) #28	ENSMMUG00000038627	TMEM176B (ENSMMUG00000008596) #30	GIMAP5 (ENSMMUG00000049295) #32	ENSMMUG00000040065 #33	GIMAP2 (ENSMMUG00000017008) #34	GIMAP6 (ENSMMUG00000047276) #35	ENSMMUG00000052830	GIMAP4 (ENSMMUG00000011386) #36	ENSMMUG00000062125
Pig-tailed macaque	MODERN SPECIES	531	PRKAG2 (ENSMNEG00000038371)	RHEB (ENSMNEG00000042255) #7	CRYGN (ENSMNEG00000041621) #9	WDR86 (ENSMNEG00000036537) #10	NUB1 (ENSMNEG00000045058) #11	SMARCD3 (ENSMNEG00000033122) #12	CHPF2 (ENSMNEG00000044778) #13	ABCF2 (ENSMNEG00000041240) #14	IQCA1L (ENSMNEG00000029575) #15	ASB10 (ENSMNEG00000038957) #16	GBX1 (ENSMNEG00000001119) #17	AGAP3 (ENSMNEG00000034968) #18	TMUB1 (ENSMNEG00000040761) #19	FASTK (ENSMNEG00000008431) #20	SLC4A2 (ENSMNEG00000040841) #21	CDK5 (ENSMNEG00000044456) #22	ASIC3 (ENSMNEG00000045380) #23	ABCB8 (ENSMNEG00000043332) #24	ATG9B (ENSMNEG00000037177) #25	NOS3 (ENSMNEG00000024070) #26	KCNH2 (ENSMNEG00000035789) #27	AOC1 (ENSMNEG00000035176) #28	TMEM176A (ENSMNEG00000034190) #29	TMEM176B (ENSMNEG00000031364) #30	GIMAP5 (ENSMNEG00000028821) #32	ENSMNEG00000044901 #33	GIMAP2 (ENSMNEG00000029559) #34	GIMAP6 (ENSMNEG00000029719) #35	GIMAP4 (ENSMNEG00000028648) #36	GIMAP7 (ENSMNEG00000031147)	ENSMNEG00000040317
Cercopithecinae_b	ANCESTRAL SPECIES	38	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805.a #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272.i #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000155390.b
Olive baboon	MODERN SPECIES	14	RHEB (ENSPANG00000000819) #7	CRYGN (ENSPANG00000000818) #9	WDR86 (ENSPANG00000009901) #10	NUB1 (ENSPANG00000015941) #11	SMARCD3 (ENSPANG00000026411) #12	CHPF2 (ENSPANG00000026410) #13	ABCF2 (ENSPANG00000026408) #14	H2BK1 (ENSPANG00000048778)	IQCA1L (ENSPANG00000035566) #15	ASB10 (ENSPANG00000025126) #16	GBX1 (ENSPANG00000005612) #17	AGAP3 (ENSPANG00000015086) #18	ENSPANG00000044859 #19	FASTK (ENSPANG00000015942) #20	SLC4A2 (ENSPANG00000006706) #21	CDK5 (ENSPANG00000008145) #22	ASIC3 (ENSPANG00000008146) #23	ABCB8 (ENSPANG00000010540) #24	ATG9B (ENSPANG00000022976) #25	NOS3 (ENSPANG00000018601) #26	KCNH2 (ENSPANG00000021876) #27	AOC1 (ENSPANG00000007750) #28	TMEM176A (ENSPANG00000006707) #29	TMEM176B (ENSPANG00000018637) #30	ENSPANG00000045069	GIMAP5 (ENSPANG00000030896) #32	GIMAP1 (ENSPANG00000021224) #33	GIMAP2 (ENSPANG00000033198) #34	GIMAP6 (ENSPANG00000039180) #35	GIMAP4 (ENSPANG00000022511) #36	GIMAP8 (ENSPANG00000008718)
Cercopithecinae_d	ANCESTRAL SPECIES	25	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805.a #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000161272.i #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000155390.b	ENSGT00940000161272.j #33
Sooty mangabey	MODERN SPECIES	636	PRKAG2 (ENSCATG00000042399)	RHEB (ENSCATG00000036856) #7	CRYGN (ENSCATG00000016594) #9	WDR86 (ENSCATG00000030296) #10	NUB1 (ENSCATG00000039631) #11	SMARCD3 (ENSCATG00000031276) #12	CHPF2 (ENSCATG00000037379) #13	ENSCATG00000034578 #14	IQCA1L (ENSCATG00000035118) #15	ASB10 (ENSCATG00000041617) #16	GBX1 (ENSCATG00000032995) #17	AGAP3 (ENSCATG00000036870) #18	TMUB1 (ENSCATG00000031978) #19	FASTK (ENSCATG00000042475) #20	SLC4A2 (ENSCATG00000042402) #21	CDK5 (ENSCATG00000034560) #22	ASIC3 (ENSCATG00000029287) #23	ABCB8 (ENSCATG00000031257) #24	ATG9B (ENSCATG00000040019) #25	NOS3 (ENSCATG00000040532) #26	KCNH2 (ENSCATG00000037490) #27	AOC1 (ENSCATG00000039117) #28	TMEM176A (ENSCATG00000038969) #29	TMEM176B (ENSCATG00000041586) #30	ENSCATG00000037061 #33	GIMAP2 (ENSCATG00000040151) #34	GIMAP6 (ENSCATG00000038067) #35	GIMAP4 (ENSCATG00000038688) #36	GIMAP7 (ENSCATG00000038180)	ENSCATG00000036445	ENSCATG00000025470 #33
Drill	MODERN SPECIES	894	PRKAG2 (ENSMLEG00000037725)	RHEB (ENSMLEG00000029027) #7	CRYGN (ENSMLEG00000036358) #9	WDR86 (ENSMLEG00000032445) #10	NUB1 (ENSMLEG00000000114) #11	SMARCD3 (ENSMLEG00000039656) #12	CHPF2 (ENSMLEG00000041443) #13	ABCF2 (ENSMLEG00000035392) #14	IQCA1L (ENSMLEG00000035830) #15	ASB10 (ENSMLEG00000044060) #16	GBX1 (ENSMLEG00000000095) #17	AGAP3 (ENSMLEG00000038770) #18	TMUB1 (ENSMLEG00000039401) #19	FASTK (ENSMLEG00000029888) #20	SLC4A2 (ENSMLEG00000032141) #21	CDK5 (ENSMLEG00000033862) #22	ASIC3 (ENSMLEG00000007148) #23	ABCB8 (ENSMLEG00000033124) #24	ATG9B (ENSMLEG00000035232) #25	NOS3 (ENSMLEG00000031185) #26	KCNH2 (ENSMLEG00000005152) #27	AOC1 (ENSMLEG00000043532) #28	TMEM176A (ENSMLEG00000028649) #29	TMEM176B (ENSMLEG00000031264) #30
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00940000160805.b #22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00940000160805.b #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000160805.b #22
Macaca	ANCESTRAL SPECIES	14	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000159963	ENSGT00940000155778.A	ENSGT00390000000420	ENSGT00390000017400	ENSGT00520000055667	ENSGT00940000153769.F	ENSGT00390000001515	ENSGT00390000003305	ENSGT00950000182863.A.b	ENSGT00390000010337.B.a.b	ENSGT00940000160805.b #22	ENSGT00950000182893.a.a.a.b	ENSGT00910000147627	ENSGT00530000063156.b	ENSGT00940000167006	ENSGT00940000160768	ENSGT00390000011435	ENSGT00950000182893.a.a.a.a	ENSGT00550000074694.a	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912	ENSGT00940000157647	ENSGT00940000159797	ENSGT00390000009543.c	ENSGT00940000159069
Pig-tailed macaque	MODERN SPECIES	419	EXT1 (ENSMNEG00000044110)	SAMD12 (ENSMNEG00000033633)	TNFRSF11B (ENSMNEG00000039819)	COLEC10 (ENSMNEG00000036282)	MAL2 (ENSMNEG00000027535)	CCN3 (ENSMNEG00000027027)	ENPP2 (ENSMNEG00000031748)	TAF2 (ENSMNEG00000034231)	DEPTOR (ENSMNEG00000028415)	ENSMNEG00000036309	COL14A1 (ENSMNEG00000034221)	MRPL13 (ENSMNEG00000034159)	MTBP (ENSMNEG00000040905)	SNTB1 (ENSMNEG00000032225)	HAS2 (ENSMNEG00000035700)	ENSMNEG00000044687 #22	ZHX2 (ENSMNEG00000023076)	DERL1 (ENSMNEG00000041012)	ENSMNEG00000031862	FAM83A (ENSMNEG00000027364)	C8orf76 (ENSMNEG00000030842)	ATAD2 (ENSMNEG00000041148)	NTAQ1 (ENSMNEG00000045030)	FBXO32 (ENSMNEG00000032524)	ENSMNEG00000044312	KLHL38 (ENSMNEG00000036823)	ANXA13 (ENSMNEG00000045289)	FAM91A1 (ENSMNEG00000031470)	FER1L6 (ENSMNEG00000027977)	TMEM65 (ENSMNEG00000043831)	ENSMNEG00000035764
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00940000160805.b #22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00940000160805.b #22
Sooty mangabey	MODERN SPECIES	285																ENSCATG00000007034 #22	ZHX2 (ENSCATG00000017447)	DERL1 (ENSCATG00000038056)	TBC1D31 (ENSCATG00000042319)	FAM83A (ENSCATG00000000664)	C8orf76 (ENSCATG00000030760)	ZHX1 (ENSCATG00000017419)	ATAD2 (ENSCATG00000029284)	ENSCATG00000026817	NTAQ1 (ENSCATG00000037335)	FBXO32 (ENSCATG00000036295)	ENSCATG00000036015	KLHL38 (ENSCATG00000034985)	ANXA13 (ENSCATG00000001971)	FAM91A1 (ENSCATG00000045013)	FER1L6 (ENSCATG00000035414)
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000160805.b #22
Golden snub-nosed monkey	MODERN SPECIES	509																ENSRROG00000042785 #22
Platyrrhini	ANCESTRAL SPECIES	10	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00630000089910.ib.a ##14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272.k #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000162462
Cebidae	ANCESTRAL SPECIES	9	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.jb #14	ENSGT01100000263569.a.a	ENSGT00630000089910.ib.a ##14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272.k #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000162462
Cebidae_a	ANCESTRAL SPECIES	33	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910.ib.a ##14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000161272.k #33	ENSGT00940000162462
Capuchin	MODERN SPECIES	20	PRKAG2 (ENSCCAG00000029818)	RHEB (ENSCCAG00000030751) #7	ENSCCAG00000020407 #9	WDR86 (ENSCCAG00000033100) #10	NUB1 (ENSCCAG00000021978) #11	SMARCD3 (ENSCCAG00000022778) #12	CHPF2 (ENSCCAG00000038042) #13	ENSCCAG00000024749 ##14	IQCA1L (ENSCCAG00000034173) #15	ASB10 (ENSCCAG00000027699) #16	GBX1 (ENSCCAG00000029886) #17	AGAP3 (ENSCCAG00000031757) #18	TMUB1 (ENSCCAG00000036546) #19	FASTK (ENSCCAG00000013285) #20	SLC4A2 (ENSCCAG00000034791) #21	CDK5 (ENSCCAG00000020731) #22	ASIC3 (ENSCCAG00000015678) #23	ABCB8 (ENSCCAG00000019976) #24	ATG9B (ENSCCAG00000030448) #25	NOS3 (ENSCCAG00000035004) #26	KCNH2 (ENSCCAG00000034409) #27	AOC1 (ENSCCAG00000028809) #28	TMEM176A (ENSCCAG00000035384) #29	TMEM176B (ENSCCAG00000027101) #30	GIMAP5 (ENSCCAG00000009203) #32	ENSCCAG00000028169 #33	GIMAP2 (ENSCCAG00000037175) #34	GIMAP6 (ENSCCAG00000034011) #35	GIMAP4 (ENSCCAG00000033055) #36	ENSCCAG00000016118	ENSCCAG00000036204 #33
Bolivian squirrel monkey	MODERN SPECIES	77	ENSSBOG00000035032 #7	CRYGN (ENSSBOG00000025976) #9	WDR86 (ENSSBOG00000028778) #10	ENSSBOG00000029952	NUB1 (ENSSBOG00000022146) #11	SMARCD3 (ENSSBOG00000021515) #12	CHPF2 (ENSSBOG00000001266) #13	ENSSBOG00000028832 ##14	IQCA1L (ENSSBOG00000026639) #15	ASB10 (ENSSBOG00000003210) #16	GBX1 (ENSSBOG00000014657) #17	AGAP3 (ENSSBOG00000035939) #18	TMUB1 (ENSSBOG00000022138) #19	FASTK (ENSSBOG00000033161) #20	SLC4A2 (ENSSBOG00000021170) #21	CDK5 (ENSSBOG00000015571) #22	ASIC3 (ENSSBOG00000029616) #23	ABCB8 (ENSSBOG00000028867) #24	ATG9B (ENSSBOG00000028624) #25	NOS3 (ENSSBOG00000019330) #26	KCNH2 (ENSSBOG00000021108) #27	AOC1 (ENSSBOG00000023203) #28	TMEM176A (ENSSBOG00000021603) #29	TMEM176B (ENSSBOG00000030133) #30	GIMAP5 (ENSSBOG00000032164) #32	ENSSBOG00000025758 #33	GIMAP6 (ENSSBOG00000022715) #35	GIMAP4 (ENSSBOG00000031262) #36	ENSSBOG00000030385 #33	GIMAP8 (ENSSBOG00000028699)	ENSSBOG00000029647
Marmoset	MODERN SPECIES	20	RHEB (ENSCJAG00000042669) #7	ENSCJAG00000083257	WDR86 (ENSCJAG00000020408) #10	NUB1 (ENSCJAG00000020400) #11	SMARCD3 (ENSCJAG00000020387) #12	CHPF2 (ENSCJAG00000020380) #13	ABCF2 (ENSCJAG00000020371) #14	H2BK1 (ENSCJAG00000066678)	IQCA1L (ENSCJAG00000020368) #15	ASB10 (ENSCJAG00000020364) #16	GBX1 (ENSCJAG00000076844) #17	AGAP3 (ENSCJAG00000020349) #18	TMUB1 (ENSCJAG00000020345) #19	ENSCJAG00000020307 #20	SLC4A2 (ENSCJAG00000020270) #21	CDK5 (ENSCJAG00000020258) #22	ASIC3 (ENSCJAG00000036249) #23	ABCB8 (ENSCJAG00000020233) #24	ATG9B (ENSCJAG00000020219) #25	NOS3 (ENSCJAG00000020179) #26	KCNH2 (ENSCJAG00000020150) #27	AOC1 (ENSCJAG00000020136) #28	TMEM176B (ENSCJAG00000020128) #30	GIMAP5 (ENSCJAG00000020126) #32	ENSCJAG00000010517 #33	GIMAP2 (ENSCJAG00000043924) #34	GIMAP6 (ENSCJAG00000020121) #35	GIMAP4 (ENSCJAG00000051224) #36	ENSCJAG00000080878	ENSCJAG00000003646	ENSCJAG00000072447
Mas night monkey	MODERN SPECIES	981	RHEB (ENSANAG00000022525) #7	ENSANAG00000031636 #9	WDR86 (ENSANAG00000020316) #10	NUB1 (ENSANAG00000031740) #11	SMARCD3 (ENSANAG00000018566) #12	CHPF2 (ENSANAG00000028707) #13	ENSANAG00000034117 ##14	IQCA1L (ENSANAG00000033798) #15	ENSANAG00000034437	ASB10 (ENSANAG00000020461) #16	GBX1 (ENSANAG00000023173) #17	AGAP3 (ENSANAG00000024056) #18	TMUB1 (ENSANAG00000022205) #19	FASTK (ENSANAG00000028784) #20	SLC4A2 (ENSANAG00000023932) #21	CDK5 (ENSANAG00000028943) #22	ASIC3 (ENSANAG00000021395) #23	ABCB8 (ENSANAG00000035186) #24	ATG9B (ENSANAG00000025775) #25	NOS3 (ENSANAG00000036230) #26	KCNH2 (ENSANAG00000026903) #27	AOC1 (ENSANAG00000035085) #28	TMEM176A (ENSANAG00000032250) #29	TMEM176B (ENSANAG00000037646) #30	ENSANAG00000036836	GIMAP1 (ENSANAG00000019932) #33	GIMAP2 (ENSANAG00000030707) #34	GIMAP6 (ENSANAG00000036674) #35	GIMAP4 (ENSANAG00000037676) #36	GIMAP8 (ENSANAG00000038300)	ENSANAG00000038423
Tarsier	MODERN SPECIES	7031	PRKAG2 (ENSTSYG00000003690)	ENSTSYG00000001286 #7	CRYGN (ENSTSYG00000033446) #9	WDR86 (ENSTSYG00000005165) #10	NUB1 (ENSTSYG00000006160) #11	SMARCD3 (ENSTSYG00000009136) #12	CHPF2 (ENSTSYG00000009125) #13	ABCF2 (ENSTSYG00000003002) #14	IQCA1L (ENSTSYG00000031229) #15	ASB10 (ENSTSYG00000003994) #16	GBX1 (ENSTSYG00000031187) #17	AGAP3 (ENSTSYG00000032211) #18	TMUB1 (ENSTSYG00000037033) #19	FASTK (ENSTSYG00000007984) #20	SLC4A2 (ENSTSYG00000007967) #21	CDK5 (ENSTSYG00000002446) #22	ASIC3 (ENSTSYG00000034790) #23	ABCB8 (ENSTSYG00000032457) #24	ATG9B (ENSTSYG00000026525) #25	NOS3 (ENSTSYG00000027211) #26	KCNH2 (ENSTSYG00000032324) #27
Euarchontoglires_A	ANCESTRAL SPECIES	17	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000159509	ENSGT00940000159317 #36	ENSGT00940000162548 #35	ENSGT00940000163384	ENSGT00940000162462
Glires	ANCESTRAL SPECIES	18	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000159509	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000161272 #33	ENSGT00940000162462
Rodentia	ANCESTRAL SPECIES	12	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000159509	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000162462
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000162462	ENSGT01030000234781
Hystricomorpha	ANCESTRAL SPECIES	35	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000162462	ENSGT00940000155153.A
Hystricomorpha_a	ANCESTRAL SPECIES	40	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT01100000263505.b.b.a.a.a.a.a	ENSGT00940000156207.b
Hystricomorpha_b	ANCESTRAL SPECIES	40	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000162548 #35	ENSGT00940000159509	ENSGT00940000154844 #32	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT01100000263505.b.b.a.a.a.a.a	ENSGT00940000156207.b
Long-tailed chinchilla	MODERN SPECIES	198	GALNTL5 (ENSCLAG00000001429)	PRKAG2 (ENSCLAG00000001384)	RHEB (ENSCLAG00000001338) #7	CRYGN (ENSCLAG00000001204) #9	WDR86 (ENSCLAG00000001192) #10	NUB1 (ENSCLAG00000001153) #11	SMARCD3 (ENSCLAG00000001124) #12	CHPF2 (ENSCLAG00000001087) #13	ABCF2 (ENSCLAG00000001001) #14	IQCA1L (ENSCLAG00000009596) #15	ASB10 (ENSCLAG00000009063) #16	AGAP3 (ENSCLAG00000008354) #18	TMUB1 (ENSCLAG00000008132) #19	FASTK (ENSCLAG00000004011) #20	SLC4A2 (ENSCLAG00000003594) #21	CDK5 (ENSCLAG00000001897) #22	ASIC3 (ENSCLAG00000001280) #23	ABCB8 (ENSCLAG00000001197) #24	ATG9B (ENSCLAG00000001096) #25	NOS3 (ENSCLAG00000001817) #26	KCNH2 (ENSCLAG00000001522) #27	AOC1 (ENSCLAG00000001431) #28	ENSCLAG00000002953	TMEM176A (ENSCLAG00000002862) #29	TMEM176B (ENSCLAG00000001328) #30	ENSCLAG00000001322 #32	ENSCLAG00000001246 #32	GIMAP6 (ENSCLAG00000001242) #35	GIMAP7 (ENSCLAG00000001217)	ENSCLAG00000001195	ENSCLAG00000001068
Degu	MODERN SPECIES	68	CRYGN (ENSODEG00000010431) #9	WDR86 (ENSODEG00000011320) #10	NUB1 (ENSODEG00000013029) #11	ENSODEG00000019677	GBX1 (ENSODEG00000010838) #17	SMARCD3 (ENSODEG00000009877) #12	CHPF2 (ENSODEG00000013871) #13	ENSODEG00000011747 #14	IQCA1L (ENSODEG00000011267) #15	ASB10 (ENSODEG00000010658) #16	AGAP3 (ENSODEG00000010305) #18	TMUB1 (ENSODEG00000011461) #19	FASTK (ENSODEG00000015168) #20	SLC4A2 (ENSODEG00000012239) #21	ENSODEG00000011951	CDK5 (ENSODEG00000011735) #22	ASIC3 (ENSODEG00000013176) #23	ABCB8 (ENSODEG00000010807) #24	ATG9B (ENSODEG00000010393) #25	NOS3 (ENSODEG00000013587) #26	KCNH2 (ENSODEG00000011499) #27	AOC1 (ENSODEG00000011268) #28	TMEM176A (ENSODEG00000012248) #29	TMEM176B (ENSODEG00000012160) #30	ENSODEG00000011013 #32	ENSODEG00000011306 #32	ENSODEG00000011911	GIMAP4 (ENSODEG00000011659) #36	ENSODEG00000011969	ENSODEG00000020077	ENSODEG00000012564
Guinea pig	MODERN SPECIES	32	PRKAG2 (ENSCPOG00000015691)	RHEB (ENSCPOG00000031743) #7	Crygn (ENSCPOG00000005218) #9	WDR86 (ENSCPOG00000026626) #10	NUB1 (ENSCPOG00000012070) #11	SMARCD3 (ENSCPOG00000020971) #12	CHPF2 (ENSCPOG00000033035) #13	ABCF2 (ENSCPOG00000008379) #14	IQCA1L (ENSCPOG00000006528) #15	ASB10 (ENSCPOG00000007315) #16	GBX1 (ENSCPOG00000011349) #17	AGAP3 (ENSCPOG00000004084) #18	TMUB1 (ENSCPOG00000032741) #19	FASTK (ENSCPOG00000037276) #20	SLC4A2 (ENSCPOG00000013226) #21	CDK5 (ENSCPOG00000004398) #22	ASIC3 (ENSCPOG00000038423) #23	ABCB8 (ENSCPOG00000004392) #24	ATG9B (ENSCPOG00000004388) #25	NOS3 (ENSCPOG00000004373) #26	KCNH2 (ENSCPOG00000022750) #27	AOC1 (ENSCPOG00000007933) #28	TMEM176A (ENSCPOG00000007369) #29	ENSCPOG00000024257 #30	GIMAP5 (ENSCPOG00000003376) #32	GIMAP1 (ENSCPOG00000021304) #33	GIMAP6 (ENSCPOG00000040378) #35	GIMAP4 (ENSCPOG00000037321) #36	ENSCPOG00000005108	ENSCPOG00000030298	ENSCPOG00000037877
Naked mole-rat female	MODERN SPECIES	14	ENSHGLG00000036262	ENSHGLG00000018334	GALNT11 (ENSHGLG00000010004)	GALNTL5 (ENSHGLG00000003942)	ENSHGLG00000038611	RHEB (ENSHGLG00000042643) #7	ENSHGLG00000034995 #11	SMARCD3 (ENSHGLG00000003237) #12	ENSHGLG00000041150	ENSHGLG00000038267 #13	ABCF2 (ENSHGLG00000005286) #14	ASB10 (ENSHGLG00000005594) #16	GBX1 (ENSHGLG00000042035) #17	ENSHGLG00000007176 #18	ENSHGLG00000036286 #18	CDK5 (ENSHGLG00000006490) #22	ASIC3 (ENSHGLG00000009218) #23	ENSHGLG00000043949 #25	ENSHGLG00000006633 #26	ENSHGLG00000048606	ENSHGLG00000050023	ENSHGLG00000032798 #28	ENSHGLG00000016361 #29	ENSHGLG00000016316 #30	ENSHGLG00000015522 #32	ENSHGLG00000012811 #33	GIMAP5 (ENSHGLG00000034323) #32	GIMAP6 (ENSHGLG00000012994) #35	GIMAP4 (ENSHGLG00000048365) #36	ENSHGLG00000038120	ENSHGLG00000037911
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000163384	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000162462
Marmotini	ANCESTRAL SPECIES	32	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000163384	ENSGT00940000162462	ENSGT01030000234781	ENSGT01100000263533.b.b.b.b.b.w	ENSGT00940000155153.A
Marmotini_b	ANCESTRAL SPECIES	45	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000163384	ENSGT00940000162462	ENSGT00940000155153.A	ENSGT00940000156207.b	ENSGT00940000162588
Squirrel	MODERN SPECIES	127	PRKAG2 (ENSSTOG00000021632)	RHEB (ENSSTOG00000004544) #7	CRYGN (ENSSTOG00000004537) #9	WDR86 (ENSSTOG00000028782) #10	NUB1 (ENSSTOG00000008307) #11	SMARCD3 (ENSSTOG00000009660) #12	CHPF2 (ENSSTOG00000009651) #13	ABCF2 (ENSSTOG00000009626) #14	IQCA1L (ENSSTOG00000009621) #15	ASB10 (ENSSTOG00000020651) #16	GBX1 (ENSSTOG00000027989) #17	AGAP3 (ENSSTOG00000026450) #18	TMUB1 (ENSSTOG00000016078) #19	FASTK (ENSSTOG00000016075) #20	SLC4A2 (ENSSTOG00000016071) #21	CDK5 (ENSSTOG00000016068) #22	ASIC3 (ENSSTOG00000024965) #23	ABCB8 (ENSSTOG00000000898) #24	ATG9B (ENSSTOG00000000891) #25	NOS3 (ENSSTOG00000000880) #26	KCNH2 (ENSSTOG00000007425) #27	AOC1 (ENSSTOG00000020269) #28	TMEM176A (ENSSTOG00000007396) #29	TMEM176B (ENSSTOG00000024139) #30	GIMAP5 (ENSSTOG00000021076) #32	GIMAP1 (ENSSTOG00000025732) #33	ENSSTOG00000005691	GIMAP8 (ENSSTOG00000025007)	ENSSTOG00000022105	ENSSTOG00000031565	REPIN1 (ENSSTOG00000021748)
Arctic ground squirrel	MODERN SPECIES	701			CRYGN (ENSUPAG00010007509) #9	WDR86 (ENSUPAG00010007501) #10	NUB1 (ENSUPAG00010007464) #11	SMARCD3 (ENSUPAG00010007449) #12	CHPF2 (ENSUPAG00010007441) #13	ABCF2 (ENSUPAG00010007419) #14	IQCA1L (ENSUPAG00010007391) #15	ASB10 (ENSUPAG00010007303) #16	GBX1 (ENSUPAG00010007280) #17	AGAP3 (ENSUPAG00010007119) #18	TMUB1 (ENSUPAG00010007112) #19	FASTK (ENSUPAG00010007103) #20	SLC4A2 (ENSUPAG00010006874) #21	CDK5 (ENSUPAG00010006800) #22	ASIC3 (ENSUPAG00010006780) #23	ABCB8 (ENSUPAG00010006736) #24	ATG9B (ENSUPAG00010006707) #25	NOS3 (ENSUPAG00010006644) #26	KCNH2 (ENSUPAG00010006612) #27	AOC1 (ENSUPAG00010006609) #28	TMEM176A (ENSUPAG00010006599) #29	TMEM176B (ENSUPAG00010006579) #30	ENSUPAG00010006570 #32
Alpin marmot	MODERN SPECIES	35	RHEB (ENSMMMG00000005420) #7	CRYGN (ENSMMMG00000005436) #9	WDR86 (ENSMMMG00000005473) #10	NUB1 (ENSMMMG00000005485) #11	SMARCD3 (ENSMMMG00000005566) #12	CHPF2 (ENSMMMG00000005585) #13	ABCF2 (ENSMMMG00000005590) #14	H2BK1 (ENSMMMG00000005826)	IQCA1L (ENSMMMG00000005830) #15	ASB10 (ENSMMMG00000005864) #16	GBX1 (ENSMMMG00000005894) #17	AGAP3 (ENSMMMG00000005900) #18	TMUB1 (ENSMMMG00000005967) #19	FASTK (ENSMMMG00000005983) #20	SLC4A2 (ENSMMMG00000006005) #21	CDK5 (ENSMMMG00000006082) #22	ASIC3 (ENSMMMG00000006131) #23	ABCB8 (ENSMMMG00000006147) #24	ATG9B (ENSMMMG00000006199) #25	NOS3 (ENSMMMG00000006221) #26	KCNH2 (ENSMMMG00000006307) #27	AOC1 (ENSMMMG00000006352) #28	TMEM176A (ENSMMMG00000006366) #29	TMEM176B (ENSMMMG00000006373) #30	ENSMMMG00000006386 #32	ENSMMMG00000006389 #32	GIMAP7 (ENSMMMG00000006396)	GIMAP4 (ENSMMMG00000006410) #36	GIMAP6 (ENSMMMG00000006424) #35	GIMAP8 (ENSMMMG00000006438)	ENSMMMG00000006461
Eurasian red squirrel	MODERN SPECIES	17	RHEB (ENSSVLG00005006988) #7	CRYGN (ENSSVLG00005007028) #9	WDR86 (ENSSVLG00005007063) #10	NUB1 (ENSSVLG00005007078) #11	SMARCD3 (ENSSVLG00005007107) #12	CHPF2 (ENSSVLG00005007152) #13	ENSSVLG00005007181 #14	H2BK1 (ENSSVLG00005007235)	IQCA1L (ENSSVLG00005007273) #15	ASB10 (ENSSVLG00005007373) #16	GBX1 (ENSSVLG00005007435) #17	AGAP3 (ENSSVLG00005007560) #18	ENSSVLG00005007969 #19	FASTK (ENSSVLG00005008006) #20	SLC4A2 (ENSSVLG00005008090) #21	CDK5 (ENSSVLG00005008483) #22	ASIC3 (ENSSVLG00005008544) #23	ABCB8 (ENSSVLG00005008695) #24	ATG9B (ENSSVLG00005008785) #25	NOS3 (ENSSVLG00005008893) #26	KCNH2 (ENSSVLG00005009247) #27	AOC1 (ENSSVLG00005009406) #28	TMEM176A (ENSSVLG00005009446) #29	ENSSVLG00005009491 #30	ENSSVLG00005009542 #32	ENSSVLG00005009592 #32	GIMAP1 (ENSSVLG00005009619) #33	GIMAP6 (ENSSVLG00005009656) #35	GIMAP4 (ENSSVLG00005009689) #36	ENSSVLG00005009717	GIMAP8 (ENSSVLG00005009759)
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000159509	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000162462
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000159509	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000162462
Muroidea	ANCESTRAL SPECIES	8	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a.v.a.a #28	ENSGT00950000183207.a.v.b #28	ENSGT00950000183207.a.u #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000159509	ENSGT00940000162548 #35	ENSGT00940000159317 #36
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a.v.a.a #28	ENSGT00950000183207.a.v.a.b #28	ENSGT00950000183207.a.v.b #28	ENSGT00950000183207.a.u #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000159509	ENSGT00940000162548 #35
Murinae	ANCESTRAL SPECIES	31	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b	ENSGT00390000014833	ENSGT00390000017006	ENSGT00530000063554.a	ENSGT00940000154795	ENSGT00940000157862	ENSGT00990000203541.a.a.a.b	ENSGT00390000009380
Mus	ANCESTRAL SPECIES	24	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b	ENSGT00390000014833	ENSGT00390000017006	ENSGT00530000063554.a	ENSGT00940000154795	ENSGT00940000157862	ENSGT00990000203541.a.a.a.b	ENSGT00390000009380
Mus_A	ANCESTRAL SPECIES	6	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b	ENSGT00390000014833	ENSGT00390000017006	ENSGT00530000063554.a	ENSGT00940000154795	ENSGT00940000157862	ENSGT00990000203541.a.a.a.b	ENSGT00390000009380
Mus_B	ANCESTRAL SPECIES	4	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b	ENSGT00390000014833	ENSGT00390000017006	ENSGT00530000063554.a	ENSGT00940000154795	ENSGT00940000157862	ENSGT00990000203541.a.a.a.b	ENSGT00390000009380
Mus_C	ANCESTRAL SPECIES	4	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00390000000118	ENSGT00940000155602	ENSGT00390000011295.b	ENSGT00390000014833	ENSGT00390000017006	ENSGT00530000063554.a	ENSGT00940000154795	ENSGT00940000157862	ENSGT00990000203541.a.a.a.b	ENSGT00390000009380
spretus	MODERN SPECIES	14	Prkag2 (MGP_SPRETEiJ_G0028021)	Rheb (MGP_SPRETEiJ_G0028020) #7	Crygn (MGP_SPRETEiJ_G0028019) #9	Wdr86 (MGP_SPRETEiJ_G0028018) #10	Nub1 (MGP_SPRETEiJ_G0028017) #11	Smarcd3 (MGP_SPRETEiJ_G0028016) #12	Chpf2 (MGP_SPRETEiJ_G0028015) #13	Abcf2 (MGP_SPRETEiJ_G0028014) #14	Iqca1l (MGP_SPRETEiJ_G0028013) #15	Asb10 (MGP_SPRETEiJ_G0028012) #16	Gbx1 (MGP_SPRETEiJ_G0028011) #17	Agap3 (MGP_SPRETEiJ_G0028010) #18	MGP_SPRETEiJ_G0028009 #19	Fastk (MGP_SPRETEiJ_G0028008) #20	Slc4a2 (MGP_SPRETEiJ_G0028007) #21	Cdk5 (MGP_SPRETEiJ_G0028006) #22	Asic3 (MGP_SPRETEiJ_G0028005) #23	Abcb8 (MGP_SPRETEiJ_G0028004) #24	Atg9b (MGP_SPRETEiJ_G0028003) #25	Nos3 (MGP_SPRETEiJ_G0028002) #26	Kcnh2 (MGP_SPRETEiJ_G0028001) #27	Nupl2 (MGP_SPRETEiJ_G0028000)	Klhl7 (MGP_SPRETEiJ_G0027999)	Hycc1 (MGP_SPRETEiJ_G0027998)	Tomm7 (MGP_SPRETEiJ_G0027997)	Rint1 (MGP_SPRETEiJ_G0027996)	Pus7 (MGP_SPRETEiJ_G0027995)	Srpk2 (MGP_SPRETEiJ_G0027994)	Kmt2e (MGP_SPRETEiJ_G0027993)	Lhfpl3 (MGP_SPRETEiJ_G0027992)	Orc5 (MGP_SPRETEiJ_G0027991)
Steppe mouse	MODERN SPECIES	131														ENSMSIG00000004686	Slc4a2 (ENSMSIG00000004460) #21	Cdk5 (ENSMSIG00000004283) #22	Asic3 (ENSMSIG00000004145) #23	Abcb8 (ENSMSIG00000004031) #24	Atg9b (ENSMSIG00000003973) #25	Nos3 (ENSMSIG00000003731) #26	Kcnh2 (ENSMSIG00000003575) #27	Nupl2 (ENSMSIG00000003518)	Klhl7 (ENSMSIG00000003367)	Hycc1 (ENSMSIG00000003256)
Mouse	MODERN SPECIES	14	Prkag2 (ENSMUSG00000028944)	Rheb (ENSMUSG00000028945) #7	Crygn (ENSMUSG00000038135) #9	Wdr86 (ENSMUSG00000055235) #10	Nub1 (ENSMUSG00000028954) #11	Smarcd3 (ENSMUSG00000028949) #12	Chpf2 (ENSMUSG00000038181) #13	Abcf2 (ENSMUSG00000028953) #14	Iqca1l (ENSMUSG00000038199) #15	Asb10 (ENSMUSG00000038204) #16	Gbx1 (ENSMUSG00000067724) #17	Agap3 (ENSMUSG00000023353) #18	Tmub1 (ENSMUSG00000028958) #19	Fastk (ENSMUSG00000028959) #20	Slc4a2 (ENSMUSG00000028962) #21	Cdk5 (ENSMUSG00000028969) #22	Asic3 (ENSMUSG00000038276) #23	Abcb8 (ENSMUSG00000028973) #24	Atg9b (ENSMUSG00000038295) #25	Nos3 (ENSMUSG00000028978) #26	Kcnh2 (ENSMUSG00000038319) #27	Nupl2 (ENSMUSG00000048439)	Klhl7 (ENSMUSG00000028986)	Hycc1 (ENSMUSG00000028995)	Tomm7 (ENSMUSG00000028998)	Rint1 (ENSMUSG00000028999)	Pus7 (ENSMUSG00000057541)	Srpk2 (ENSMUSG00000062604)	Kmt2e (ENSMUSG00000029004)	Lhfpl3 (ENSMUSG00000106379)	Orc5 (ENSMUSG00000029012)
Ryukyu mouse	MODERN SPECIES	14	Prkag2 (MGP_CAROLIEiJ_G0027025)	Rheb (MGP_CAROLIEiJ_G0027024) #7	Crygn (MGP_CAROLIEiJ_G0027023) #9	MGP_CAROLIEiJ_G0027022 #10	Nub1 (MGP_CAROLIEiJ_G0027021) #11	Smarcd3 (MGP_CAROLIEiJ_G0027020) #12	Chpf2 (MGP_CAROLIEiJ_G0027019) #13	Abcf2 (MGP_CAROLIEiJ_G0027018) #14	Iqca1l (MGP_CAROLIEiJ_G0027017) #15	Asb10 (MGP_CAROLIEiJ_G0027016) #16	Gbx1 (MGP_CAROLIEiJ_G0027015) #17	Agap3 (MGP_CAROLIEiJ_G0027014) #18	MGP_CAROLIEiJ_G0027013 #19	Fastk (MGP_CAROLIEiJ_G0027012) #20	Slc4a2 (MGP_CAROLIEiJ_G0027011) #21	Cdk5 (MGP_CAROLIEiJ_G0027010) #22	Asic3 (MGP_CAROLIEiJ_G0027009) #23	Abcb8 (MGP_CAROLIEiJ_G0027008) #24	Atg9b (MGP_CAROLIEiJ_G0027007) #25	Nos3 (MGP_CAROLIEiJ_G0027006) #26	Kcnh2 (MGP_CAROLIEiJ_G0027005) #27	Nupl2 (MGP_CAROLIEiJ_G0027004)	Klhl7 (MGP_CAROLIEiJ_G0027003)	Hycc1 (MGP_CAROLIEiJ_G0027002)	Tomm7 (MGP_CAROLIEiJ_G0027001)	Rint1 (MGP_CAROLIEiJ_G0027000)	Pus7 (MGP_CAROLIEiJ_G0026999)	Srpk2 (MGP_CAROLIEiJ_G0026998)	Kmt2e (MGP_CAROLIEiJ_G0026997)	Lhfpl3 (MGP_CAROLIEiJ_G0026996)	Reln (MGP_CAROLIEiJ_G0026995)
Shrew mouse	MODERN SPECIES	11	Prkag2 (MGP_PahariEiJ_G0021798)	Rheb (MGP_PahariEiJ_G0021797) #7	Crygn (MGP_PahariEiJ_G0021796) #9	Wdr86 (MGP_PahariEiJ_G0021795) #10	Nub1 (MGP_PahariEiJ_G0021794) #11	Smarcd3 (MGP_PahariEiJ_G0021793) #12	Chpf2 (MGP_PahariEiJ_G0021792) #13	Abcf2 (MGP_PahariEiJ_G0021791) #14	Iqca1l (MGP_PahariEiJ_G0021790) #15	Asb10 (MGP_PahariEiJ_G0021789) #16	Gbx1 (MGP_PahariEiJ_G0021788) #17	MGP_PahariEiJ_G0021787 #18	MGP_PahariEiJ_G0021786 #19	Fastk (MGP_PahariEiJ_G0021785) #20	Slc4a2 (MGP_PahariEiJ_G0021784) #21	Cdk5 (MGP_PahariEiJ_G0021783) #22	Asic3 (MGP_PahariEiJ_G0021782) #23	Abcb8 (MGP_PahariEiJ_G0021781) #24	Atg9b (MGP_PahariEiJ_G0021780) #25	Nos3 (MGP_PahariEiJ_G0021779) #26	Kcnh2 (MGP_PahariEiJ_G0021778) #27	Nupl2 (MGP_PahariEiJ_G0021777)	Klhl7 (MGP_PahariEiJ_G0021776)	Hycc1 (MGP_PahariEiJ_G0021775)	MGP_PahariEiJ_G0021774	Tomm7 (MGP_PahariEiJ_G0021773)	Rint1 (MGP_PahariEiJ_G0021772)	Pus7 (MGP_PahariEiJ_G0021771)	Srpk2 (MGP_PahariEiJ_G0021770)	Kmt2e (MGP_PahariEiJ_G0021769)	Lhfpl3 (MGP_PahariEiJ_G0021768)
Rat	MODERN SPECIES	14	Rheb (ENSRNOG00000050578) #7	Crygn (ENSRNOG00000009226) #9	Wdr86 (ENSRNOG00000025735) #10	Nub1 (ENSRNOG00000009282) #11	AC099360.1 (ENSRNOG00000025214)	Smarcd3 (ENSRNOG00000010077) #12	Chpf2 (ENSRNOG00000010466) #13	Abcf2 (ENSRNOG00000010609) #14	Iqca1l (ENSRNOG00000011092) #15	Asb10 (ENSRNOG00000024885) #16	Gbx1 (ENSRNOG00000013369) #17	Agap3 (ENSRNOG00000012764) #18	Tmub1 (ENSRNOG00000013383) #19	Fastk (ENSRNOG00000011667) #20	Slc4a2 (ENSRNOG00000014347) #21	Cdk5 (ENSRNOG00000008017) #22	Asic3 (ENSRNOG00000008380) #23	Abcb8 (ENSRNOG00000008557) #24	Atg9b (ENSRNOG00000023449) #25	Nos3 (ENSRNOG00000009348) #26	Kcnh2 (ENSRNOG00000009872) #27	Nup42 (ENSRNOG00000010435)	Klhl7 (ENSRNOG00000010453)	Hycc1 (ENSRNOG00000010517)	Tomm7 (ENSRNOG00000043114)	Rint1 (ENSRNOG00000022182)	Pus7 (ENSRNOG00000010572)	ENSRNOG00000069504	ENSRNOG00000069797	Srpk2 (ENSRNOG00000010601)	Kmt2e (ENSRNOG00000021614)
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a.v.a.a #28	ENSGT00950000183207.a.v.a.b #28	ENSGT00950000183207.a.v.b #28	ENSGT00950000183207.a.u #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000159509	ENSGT00940000162548 #35
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a.u #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000159509	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000162462
Golden Hamster	MODERN SPECIES	874	Prkag2 (ENSMAUG00000009204)	Rheb (ENSMAUG00000014570) #7	Crygn (ENSMAUG00000001392) #9	Nub1 (ENSMAUG00000007929) #11	Smarcd3 (ENSMAUG00000012670) #12	Chpf2 (ENSMAUG00000017133) #13	Abcf2 (ENSMAUG00000002751) #14	Iqca1l (ENSMAUG00000012057) #15	Asb10 (ENSMAUG00000014266) #16	Gbx1 (ENSMAUG00000012458) #17	ENSMAUG00000013812 #18	ENSMAUG00000011748 #18	ENSMAUG00000013296 #19	Fastk (ENSMAUG00000015620) #20	Slc4a2 (ENSMAUG00000004472) #21	Cdk5 (ENSMAUG00000016278) #22	Asic3 (ENSMAUG00000017454) #23	Abcb8 (ENSMAUG00000020986) #24	Atg9b (ENSMAUG00000000520) #25	Nos3 (ENSMAUG00000016919) #26	Kcnh2 (ENSMAUG00000011849) #27
Chinese hamster chok1gshd	MODERN SPECIES	212	Prkag2 (ENSCGRG00001022044)	Rheb (ENSCGRG00001021366) #7	Crygn (ENSCGRG00001018926) #9	Wdr86 (ENSCGRG00001018301) #10	Nub1 (ENSCGRG00001017536) #11	Smarcd3 (ENSCGRG00001012201) #12	Chpf2 (ENSCGRG00001011550) #13	Abcf2 (ENSCGRG00001008869) #14	Iqca1l (ENSCGRG00001021354) #15	Asb10 (ENSCGRG00001020425) #16	Gbx1 (ENSCGRG00001018832) #17	Agap3 (ENSCGRG00001011337) #18	ENSCGRG00001006068 #19	Fastk (ENSCGRG00001002508) #20	Slc4a2 (ENSCGRG00001023606) #21	Cdk5 (ENSCGRG00001008797) #22	Asic3 (ENSCGRG00001000304) #23	Abcb8 (ENSCGRG00001020904) #24	Atg9b (ENSCGRG00001020294) #25	Nos3 (ENSCGRG00001012812) #26	Kcnh2 (ENSCGRG00001005157) #27	ENSCGRG00001003539	Aoc1l1 (ENSCGRG00001006146) #28	Aoc1 (ENSCGRG00001004185) #28	Tmem176a (ENSCGRG00001002583) #29	Tmem176b (ENSCGRG00001000082) #30	ENSCGRG00001024272 #32	ENSCGRG00001024196 #32	Gimap1 (ENSCGRG00001024093) #33	Gimap7 (ENSCGRG00001023941)	Gimap6 (ENSCGRG00001023782) #35
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a.v.a.a #28	ENSGT00950000183207.a.v.a.b #28	ENSGT00950000183207.a.v.b #28	ENSGT00950000183207.a.u #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000159509	ENSGT00940000162548 #35
Northern American deer mouse	MODERN SPECIES	16	Galntl5 (ENSPEMG00000013005)	Prkag2 (ENSPEMG00000023670)	Rheb (ENSPEMG00000023193) #7	Crygn (ENSPEMG00000000688) #9	Wdr86 (ENSPEMG00000010088) #10	Nub1 (ENSPEMG00000001953) #11	Smarcd3 (ENSPEMG00000017902) #12	Chpf2 (ENSPEMG00000023137) #13	Abcf2 (ENSPEMG00000011302) #14	Iqca1l (ENSPEMG00000008977) #15	Asb10 (ENSPEMG00000008631) #16	Agap3 (ENSPEMG00000017584) #18	ENSPEMG00000025700 #19	Fastk (ENSPEMG00000012621) #20	Slc4a2 (ENSPEMG00000019200) #21	Cdk5 (ENSPEMG00000008062) #22	Asic3 (ENSPEMG00000015399) #23	Abcb8 (ENSPEMG00000014335) #24	Atg9b (ENSPEMG00000013306) #25	Nos3 (ENSPEMG00000018547) #26	Kcnh2 (ENSPEMG00000011184) #27	Aoc1l3 (ENSPEMG00000005194) #28	Aoc1l1 (ENSPEMG00000017931) #28	Aoc1l2 (ENSPEMG00000010717) #28	Aoc1 (ENSPEMG00000013298) #28	Tmem176a (ENSPEMG00000012097) #29	Tmem176b (ENSPEMG00000013517) #30	ENSPEMG00000019236 #32	ENSPEMG00000014554 #32	Gimap1 (ENSPEMG00000008081) #33	Gimap7 (ENSPEMG00000029041)
Prairie vole	MODERN SPECIES	101	Rheb (ENSMOCG00000022240) #7	Crygn (ENSMOCG00000015061) #9	Wdr86 (ENSMOCG00000000597) #10	Nub1 (ENSMOCG00000019268) #11	ENSMOCG00000015181	Smarcd3 (ENSMOCG00000010890) #12	Chpf2 (ENSMOCG00000007789) #13	Abcf2 (ENSMOCG00000015316) #14	Iqca1l (ENSMOCG00000015251) #15	Asb10 (ENSMOCG00000015543) #16	Gbx1 (ENSMOCG00000010139) #17	Agap3 (ENSMOCG00000006732) #18	ENSMOCG00000018089 #19	Fastk (ENSMOCG00000020800) #20	Slc4a2 (ENSMOCG00000003131) #21	Cdk5 (ENSMOCG00000020337) #22	Asic3 (ENSMOCG00000015562) #23	Abcb8 (ENSMOCG00000001257) #24	Atg9b (ENSMOCG00000018037) #25	Nos3 (ENSMOCG00000013421) #26	Kcnh2 (ENSMOCG00000019548) #27	Aoc1l3 (ENSMOCG00000016661) #28	Aoc1l1 (ENSMOCG00000008709) #28	Aoc1l2 (ENSMOCG00000002665) #28	Aoc1 (ENSMOCG00000018524) #28	Tmem176a (ENSMOCG00000006999) #29	Tmem176b (ENSMOCG00000019873) #30
Upper Galilee mountains blind mole rat	MODERN SPECIES	1374	Prkag2 (ENSNGAG00000021870)	Rheb (ENSNGAG00000023353) #7	Crygn (ENSNGAG00000024102) #9	Wdr86 (ENSNGAG00000022320) #10	Nub1 (ENSNGAG00000021107) #11	Smarcd3 (ENSNGAG00000020148) #12	Chpf2 (ENSNGAG00000018522) #13	Abcf2 (ENSNGAG00000023843) #14	Iqca1l (ENSNGAG00000014895) #15	Asb10 (ENSNGAG00000023049) #16	Gbx1 (ENSNGAG00000013671) #17	Agap3 (ENSNGAG00000023687) #18	ENSNGAG00000021132 #19	Fastk (ENSNGAG00000010690) #20	Slc4a2 (ENSNGAG00000021758) #21	Cdk5 (ENSNGAG00000016017) #22	Asic3 (ENSNGAG00000006056) #23	Abcb8 (ENSNGAG00000023058) #24	Atg9b (ENSNGAG00000023490) #25	Nos3 (ENSNGAG00000017572) #26	Kcnh2 (ENSNGAG00000021118) #27	Aoc1l3 (ENSNGAG00000021501) #28	Aoc1l2 (ENSNGAG00000015976) #28	Aoc1 (ENSNGAG00000002359) #28	Tmem176a (ENSNGAG00000013256) #29	Tmem176b (ENSNGAG00000021842) #30	ENSNGAG00000020526 #32	ENSNGAG00000022013 #32	Gimap1 (ENSNGAG00000001314) #33	ENSNGAG00000001114	Gimap6 (ENSNGAG00000009129) #35
Lesser Egyptian jerboa	MODERN SPECIES	172	Prkag2 (ENSJJAG00000009778)	ENSJJAG00000007504 #7	Crygn (ENSJJAG00000010524) #9	Wdr86 (ENSJJAG00000022192) #10	Nub1 (ENSJJAG00000022628) #11	Smarcd3 (ENSJJAG00000007835) #12	Chpf2 (ENSJJAG00000009557) #13	ENSJJAG00000010250 #14	Iqca1l (ENSJJAG00000011826) #15	Asb10 (ENSJJAG00000013788) #16	Gbx1 (ENSJJAG00000014103) #17	Agap3 (ENSJJAG00000012866) #18	ENSJJAG00000015518 #19	Fastk (ENSJJAG00000016554) #20	Slc4a2 (ENSJJAG00000018387) #21	Cdk5 (ENSJJAG00000020673) #22	Asic3 (ENSJJAG00000023829) #23	Abcb8 (ENSJJAG00000012342) #24	Atg9b (ENSJJAG00000020681) #25	Nos3 (ENSJJAG00000004754) #26	Kcnh2 (ENSJJAG00000010282) #27	ENSJJAG00000010815 #28	ENSJJAG00000011103 #28
Kangaroo rat	MODERN SPECIES	420	ENSDORG00000008404	Rheb (ENSDORG00000010304) #7	Crygn (ENSDORG00000028405) #9	Wdr86 (ENSDORG00000012494) #10	Nub1 (ENSDORG00000012490) #11	Smarcd3 (ENSDORG00000012674) #12	Chpf2 (ENSDORG00000012673) #13	Abcf2 (ENSDORG00000012672) #14	Iqca1l (ENSDORG00000002574) #15	Asb10 (ENSDORG00000003974) #16	ENSDORG00000029937 #18	ENSDORG00000023970 #18	ENSDORG00000028585 #19	Fastk (ENSDORG00000006552) #20	Slc4a2 (ENSDORG00000006549) #21	Cdk5 (ENSDORG00000006548) #22	Asic3 (ENSDORG00000006545) #23	Abcb8 (ENSDORG00000006543) #24	Atg9b (ENSDORG00000004174) #25	Nos3 (ENSDORG00000004171) #26	Kcnh2 (ENSDORG00000000745) #27	ENSDORG00000004097 #28	ENSDORG00000023963	Tmem176a (ENSDORG00000004658) #29	Tmem176b (ENSDORG00000004655) #30
Lagomorpha	ANCESTRAL SPECIES	148	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27
Rabbit	MODERN SPECIES	4	RHEB (ENSOCUG00000013173) #7	CRYGN (ENSOCUG00000013525) #9	WDR86 (ENSOCUG00000004055) #10	NUB1 (ENSOCUG00000004031) #11	SMARCD3 (ENSOCUG00000000249) #12	CHPF2 (ENSOCUG00000000247) #13	ABCF2 (ENSOCUG00000000245) #14	H2BK1 (ENSOCUG00000032108)	IQCA1L (ENSOCUG00000015245) #15	ASB10 (ENSOCUG00000000242) #16	ENSOCUG00000022822 #17	AGAP3 (ENSOCUG00000022100) #18	TMUB1 (ENSOCUG00000001736) #19	FASTK (ENSOCUG00000023964) #20	SLC4A2 (ENSOCUG00000038102) #21	CDK5 (ENSOCUG00000021398) #22	ASIC3 (ENSOCUG00000027689) #23	ABCB8 (ENSOCUG00000008682) #24	ATG9B (ENSOCUG00000008673) #25	NOS3 (ENSOCUG00000023757) #26	KCNH2 (ENSOCUG00000027575) #27	HTR5A (ENSOCUG00000001410)	ENSOCUG00000023543	INSIG1 (ENSOCUG00000013795)	EN2 (ENSOCUG00000002453)	ENSOCUG00000002457	ENSOCUG00000033825	SHH (ENSOCUG00000016862)	RBM33 (ENSOCUG00000012142)	RNF32 (ENSOCUG00000022989)	LMBR1 (ENSOCUG00000001247)
Laurasiatheria	ANCESTRAL SPECIES	21	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000163384
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000160805 #22
Hedgehog	MODERN SPECIES	5881																CDK5 (ENSEEUG00000013189) #22
Laurasiatheria_a	ANCESTRAL SPECIES	14	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000159509	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384
Artiodactyla	ANCESTRAL SPECIES	11	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000163457 #34	ENSGT00940000159509	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000161272 #33
Suina	ANCESTRAL SPECIES	19	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000163384	ENSGT00940000159317 #36	ENSGT00940000162548 #35	ENSGT00940000163457 #34	ENSGT00940000161272 #33	ENSGT00940000162462
Chacoan peccary	MODERN SPECIES	896	RHEB (ENSCWAG00000020172) #7	CRYGN (ENSCWAG00000020134) #9	WDR86 (ENSCWAG00000020108) #10	NUB1 (ENSCWAG00000020093) #11	SMARCD3 (ENSCWAG00000020043) #12	CHPF2 (ENSCWAG00000020019) #13	ABCF2 (ENSCWAG00000019992) #14	H2BK1 (ENSCWAG00000019982)	IQCA1L (ENSCWAG00000019936) #15	ASB10 (ENSCWAG00000019876) #16	GBX1 (ENSCWAG00000019859) #17	AGAP3 (ENSCWAG00000019583) #18	TMUB1 (ENSCWAG00000019531) #19	FASTK (ENSCWAG00000019442) #20	SLC4A2 (ENSCWAG00000019137) #21	CDK5 (ENSCWAG00000019064) #22	ASIC3 (ENSCWAG00000018973) #23	ABCB8 (ENSCWAG00000018941) #24	ATG9B (ENSCWAG00000018887) #25	NOS3 (ENSCWAG00000018610) #26	KCNH2 (ENSCWAG00000018446) #27	AOC1 (ENSCWAG00000018408) #28	ENSCWAG00000018372 #29	ENSCWAG00000018254 #30	ENSCWAG00000018223 #32	ENSCWAG00000018132 #33	GIMAP4 (ENSCWAG00000018103) #36	ENSCWAG00000018069	GIMAP7 (ENSCWAG00000018038)	ENSCWAG00000017994 #35	GIMAP8 (ENSCWAG00000017963)
Artiodactyla_a	ANCESTRAL SPECIES	11	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000159509	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384
Camelidae	ANCESTRAL SPECIES	75	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000161272.r #33	ENSGT00940000163457 #34	ENSGT00940000163384	ENSGT00940000162548 #35	ENSGT00940000159509	ENSGT00940000161272.q #33
Arabian camel	MODERN SPECIES	33	RHEB (ENSCDRG00005012087) #7	CRYGN (ENSCDRG00005011967) #9	WDR86 (ENSCDRG00005011910) #10	NUB1 (ENSCDRG00005011838) #11	SMARCD3 (ENSCDRG00005011690) #12	CHPF2 (ENSCDRG00005011532) #13	ABCF2 (ENSCDRG00005011475) #14	H2BK1 (ENSCDRG00005011439)	IQCA1L (ENSCDRG00005011230) #15	ASB10 (ENSCDRG00005010967) #16	GBX1 (ENSCDRG00005010890) #17	AGAP3 (ENSCDRG00005010496) #18	TMUB1 (ENSCDRG00005010450) #19	FASTK (ENSCDRG00005010231) #20	SLC4A2 (ENSCDRG00005009312) #21	CDK5 (ENSCDRG00005009004) #22	ASIC3 (ENSCDRG00005008752) #23	ABCB8 (ENSCDRG00005008475) #24	ATG9B (ENSCDRG00005008381) #25	ENSCDRG00005008336 #26	KCNH2 (ENSCDRG00005008286) #27	AOC1 (ENSCDRG00005008235) #28	TMEM176A (ENSCDRG00005008172) #29	TMEM176B (ENSCDRG00005008109) #30	GIMAP4 (ENSCDRG00005008080) #36	ENSCDRG00005007982 #32	ENSCDRG00005007944 #32	ENSCDRG00005007892 #33	GIMAP2 (ENSCDRG00005007921) #34	ENSCDRG00005007886	GIMAP6 (ENSCDRG00005007857) #35
Artiodactyla_b	ANCESTRAL SPECIES	11	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000159509	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000163384
Cetacea	ANCESTRAL SPECIES	13	ENSGT00390000007225.g.a.a	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a.g #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000163384	ENSGT00940000159317 #36	ENSGT00940000162548 #35	ENSGT00940000163457 #34	ENSGT00940000161272 #33	ENSGT00940000154844 #32	ENSGT00940000162462
Odontoceti	ANCESTRAL SPECIES	12	ENSGT00390000007225.g.a.a	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a.g #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000163384	ENSGT00940000159317 #36	ENSGT00940000162548 #35	ENSGT00940000163457 #34	ENSGT00940000161272 #33	ENSGT00940000154844 #32	ENSGT00940000162462
Odontoceti_a	ANCESTRAL SPECIES	32	ENSGT00390000007225.g.a.a	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a.g #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30
Dolphin	MODERN SPECIES	3202							SMARCD3 (ENSTTRG00000000872) #12	CHPF2 (ENSTTRG00000000870) #13	ABCF2 (ENSTTRG00000000866) #14	IQCA1L (ENSTTRG00000000858) #15	ASB10 (ENSTTRG00000000857) #16	ENSTTRG00000000855 #17	TMUB1 (ENSTTRG00000000854) #19	FASTK (ENSTTRG00000000853) #20	SLC4A2 (ENSTTRG00000000852) #21	CDK5 (ENSTTRG00000000850) #22	ASIC3 (ENSTTRG00000000846) #23	ABCB8 (ENSTTRG00000000843) #24	ATG9B (ENSTTRG00000000840) #25	NOS3 (ENSTTRG00000000832) #26	KCNH2 (ENSTTRG00000000826) #27	AOC1 (ENSTTRG00000000822) #28
Odontoceti_b	ANCESTRAL SPECIES	13	ENSGT00390000007225.g.a.a	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a.g #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000161272 #33	ENSGT00390000016988.a.a.a.b.a.a	ENSGT00940000163384	ENSGT00940000159317 #36	ENSGT00940000162548 #35	ENSGT00940000163457 #34	ENSGT00940000154844 #32	ENSGT00940000162462
Monodontidae	ANCESTRAL SPECIES	12	ENSGT00390000007225.g.a.a	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a.g #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00390000016988.a.a.a.b.a.a	ENSGT00940000161272 #33	ENSGT00940000154844 #32	ENSGT00940000162462
Narwhal	MODERN SPECIES	306	PRKAG2 (ENSMMNG00015011390)	RHEB (ENSMMNG00015011357) #7	CRYGN (ENSMMNG00015011347) #9	WDR86 (ENSMMNG00015011331) #10	NUB1 (ENSMMNG00015011322) #11	SMARCD3 (ENSMMNG00015011276) #12	CHPF2 (ENSMMNG00015011246) #13	ABCF2 (ENSMMNG00015011216) #14	H2BK1 (ENSMMNG00015011191)	ASB10 (ENSMMNG00015011152) #16	GBX1 (ENSMMNG00015011116) #17	ENSMMNG00015011071 #18	ENSMMNG00015011039 #19	FASTK (ENSMMNG00015011003) #20	SLC4A2 (ENSMMNG00015010833) #21	CDK5 (ENSMMNG00015010694) #22	ASIC3 (ENSMMNG00015010633) #23	ABCB8 (ENSMMNG00015010549) #24	NOS3 (ENSMMNG00015010403) #26	KCNH2 (ENSMMNG00015010345) #27	AOC1 (ENSMMNG00015010318) #28	TMEM176A (ENSMMNG00015010302) #29	TMEM176B (ENSMMNG00015010281) #30	GIMAP2 (ENSMMNG00015010267) #34	GIMAP6 (ENSMMNG00015010255) #35	GIMAP4 (ENSMMNG00015010244) #36	ENSMMNG00015010238	ENSMMNG00015010224	GIMAP1 (ENSMMNG00015010219) #33	GIMAP5 (ENSMMNG00015010208) #32	GIMAP8 (ENSMMNG00015010198)
Beluga whale	MODERN SPECIES	72	ENSDLEG00000016601	CRYGN (ENSDLEG00000016607) #9	WDR86 (ENSDLEG00000016625) #10	NUB1 (ENSDLEG00000016649) #11	SMARCD3 (ENSDLEG00000016770) #12	CHPF2 (ENSDLEG00000016859) #13	ABCF2 (ENSDLEG00000016902) #14	H2BK1 (ENSDLEG00000016921)	IQCA1L (ENSDLEG00000016936) #15	ASB10 (ENSDLEG00000016959) #16	GBX1 (ENSDLEG00000016969) #17	AGAP3 (ENSDLEG00000016978) #18	TMUB1 (ENSDLEG00000016998) #19	FASTK (ENSDLEG00000017006) #20	SLC4A2 (ENSDLEG00000017025) #21	CDK5 (ENSDLEG00000017059) #22	ASIC3 (ENSDLEG00000017091) #23	ABCB8 (ENSDLEG00000017204) #24	NOS3 (ENSDLEG00000017235) #26	KCNH2 (ENSDLEG00000017279) #27	AOC1 (ENSDLEG00000017311) #28	ENSDLEG00000017324 #29	TMEM176B (ENSDLEG00000017346) #30	GIMAP2 (ENSDLEG00000017367) #34	GIMAP6 (ENSDLEG00000017401) #35	GIMAP4 (ENSDLEG00000017407) #36	GIMAP7 (ENSDLEG00000017421)	ENSDLEG00000017428	GIMAP1 (ENSDLEG00000017434) #33	ENSDLEG00000017444 #32	GIMAP8 (ENSDLEG00000017454)
Vaquita	MODERN SPECIES	20	RHEB (ENSPSNG00000005066) #7	ENSPSNG00000005085	CRYGN (ENSPSNG00000005096) #9	WDR86 (ENSPSNG00000005119) #10	NUB1 (ENSPSNG00000005137) #11	SMARCD3 (ENSPSNG00000005169) #12	CHPF2 (ENSPSNG00000005227) #13	ABCF2 (ENSPSNG00000005283) #14	IQCA1L (ENSPSNG00000005327) #15	ASB10 (ENSPSNG00000005423) #16	GBX1 (ENSPSNG00000005489) #17	AGAP3 (ENSPSNG00000005568) #18	ENSPSNG00000005864 #19	FASTK (ENSPSNG00000005905) #20	SLC4A2 (ENSPSNG00000006047) #21	CDK5 (ENSPSNG00000006303) #22	ASIC3 (ENSPSNG00000006359) #23	ABCB8 (ENSPSNG00000006417) #24	ENSPSNG00000006585 #26	KCNH2 (ENSPSNG00000006690) #27	AOC1 (ENSPSNG00000006819) #28	ENSPSNG00000006948 #30	ENSPSNG00000007013 #32	ENSPSNG00000007046 #32	GIMAP1 (ENSPSNG00000007097) #33	ENSPSNG00000007121	ENSPSNG00000007141	ENSPSNG00000007154 #36	GIMAP6 (ENSPSNG00000007172) #35	GIMAP2 (ENSPSNG00000007237) #34	ENSPSNG00000007259 #32
Sperm whale	MODERN SPECIES	16	XRCC2 (ENSPCTG00005008485)	KMT2C (ENSPCTG00005008586)	ENSPCTG00005009773	GALNT11 (ENSPCTG00005009799)	GALNTL5 (ENSPCTG00005009865)	PRKAG2 (ENSPCTG00005009961)	RHEB (ENSPCTG00005010342) #7	CRYGN (ENSPCTG00005010433) #9	NUB1 (ENSPCTG00005010493) #11	H2BK1 (ENSPCTG00005010532)	ABCF2 (ENSPCTG00005010604) #14	AGAP3 (ENSPCTG00005011325) #18	TMUB1 (ENSPCTG00005011591) #19	FASTK (ENSPCTG00005011652) #20	SLC4A2 (ENSPCTG00005011841) #21	CDK5 (ENSPCTG00005012393) #22	ASIC3 (ENSPCTG00005012497) #23	ABCB8 (ENSPCTG00005012746) #24	ATG9B (ENSPCTG00005012954) #25	NOS3 (ENSPCTG00005013206) #26	KCNH2 (ENSPCTG00005014033) #27	AOC1 (ENSPCTG00005014402) #28	TMEM176A (ENSPCTG00005014451) #29	TMEM176B (ENSPCTG00005014490) #30	ENSPCTG00005014596 #32	ENSPCTG00005014616 #32	ENSPCTG00005014670	ENSPCTG00005014731 #36	ENSPCTG00005014795	ENSPCTG00005014835	GIMAP2 (ENSPCTG00005014897) #34
Blue whale	MODERN SPECIES	20	ENSBMSG00010012111	CRYGN (ENSBMSG00010012122) #9	WDR86 (ENSBMSG00010012134) #10	NUB1 (ENSBMSG00010012152) #11	SMARCD3 (ENSBMSG00010012184) #12	CHPF2 (ENSBMSG00010012253) #13	ABCF2 (ENSBMSG00010012306) #14	H2BK1 (ENSBMSG00010012338)	IQCA1L (ENSBMSG00010012358) #15	ASB10 (ENSBMSG00010012396) #16	GBX1 (ENSBMSG00010012429) #17	AGAP3 (ENSBMSG00010012509) #18	ENSBMSG00010012645 #19	FASTK (ENSBMSG00010012671) #20	SLC4A2 (ENSBMSG00010012762) #21	CDK5 (ENSBMSG00010012888) #22	ASIC3 (ENSBMSG00010012962) #23	ABCB8 (ENSBMSG00010013860) #24	ATG9B (ENSBMSG00010013951) #25	NOS3 (ENSBMSG00010014017) #26	KCNH2 (ENSBMSG00010014201) #27	AOC1 (ENSBMSG00010014295) #28	ENSBMSG00010014333 #29	TMEM176B (ENSBMSG00010014436) #30	ENSBMSG00010014501 #32	ENSBMSG00010014522 #33	ENSBMSG00010014543 #32	ENSBMSG00010014570 #33	ENSBMSG00010014583 #34	ENSBMSG00010014602	ENSBMSG00010014628
Pecora	ANCESTRAL SPECIES	11	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.pb.b.a.b #32	ENSGT00940000154844.qb.a.a #32	ENSGT00940000161272.o #33	ENSGT00940000163457 #34	ENSGT00940000163384.h	ENSGT00940000162548 #35	ENSGT00940000159509.l.a.a.b
Percora_a	ANCESTRAL SPECIES	11	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.qb.a.a #32	ENSGT00940000161272.o #33	ENSGT00940000163457 #34	ENSGT00940000163384.h	ENSGT00940000154844.pb.a #32	ENSGT00940000159509.k	ENSGT00940000162548 #35
Bovidae	ANCESTRAL SPECIES	12	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.pb.b.a.b #32	ENSGT00940000154844.qb.a.a #32	ENSGT00940000163457 #34	ENSGT00940000163384.h	ENSGT00940000162548.h #35	ENSGT00940000159317.f.a.a #36	ENSGT00940000161272.o #33
Caprinae	ANCESTRAL SPECIES	47	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b.a #20	ENSGT00920000150788	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.pb.b.a.b #32	ENSGT00940000154844.qb.a.a.a #32	ENSGT00940000154844.qb.a.a.b #32	ENSGT00940000161272.o.b #33	ENSGT00940000163457 #34	ENSGT00940000162548.g.b #35	ENSGT00940000159509.l.a.a.b.a
Goat	MODERN SPECIES	23	RHEB (ENSCHIG00000017350) #7	CRYGN (ENSCHIG00000027202) #9	WDR86 (ENSCHIG00000018401) #10	NUB1 (ENSCHIG00000010018) #11	SMARCD3 (ENSCHIG00000024917) #12	CHPF2 (ENSCHIG00000014448) #13	ABCF2 (ENSCHIG00000025680) #14	H2BK1 (ENSCHIG00000012881)	IQCA1L (ENSCHIG00000018006) #15	ASB10 (ENSCHIG00000013692) #16	GBX1 (ENSCHIG00000020266) #17	AGAP3 (ENSCHIG00000013334) #18	TMUB1 (ENSCHIG00000024956) #19	ENSCHIG00000013495 #20	ENSCHIG00000019058 #35	CDK5 (ENSCHIG00000025935) #22	ASIC3 (ENSCHIG00000015676) #23	ABCB8 (ENSCHIG00000023427) #24	ATG9B (ENSCHIG00000024543) #25	NOS3 (ENSCHIG00000013266) #26	KCNH2 (ENSCHIG00000019111) #27	AOC1 (ENSCHIG00000019018) #28	TMEM176A (ENSCHIG00000009158) #29	TMEM176B (ENSCHIG00000011978) #30	ENSCHIG00000000607 #32	ENSCHIG00000024288 #33	ENSCHIG00000015895	ENSCHIG00000026449 #35	ENSCHIG00000020146 #36	ENSCHIG00000023569	ENSCHIG00000012731
Rambouillet Sheep	MODERN SPECIES	20	RHEB (ENSOARG00020016712) #7	CRYGN (ENSOARG00020016653) #9	WDR86 (ENSOARG00020016555) #10	NUB1 (ENSOARG00020016427) #11	SMARCD3 (ENSOARG00020016209) #12	ABCF2 (ENSOARG00020016106) #14	H2BK1 (ENSOARG00020016084)	IQCA1L (ENSOARG00020015938) #15	ASB10 (ENSOARG00020015699) #16	CHPF2 (ENSOARG00020015638) #13	GBX1 (ENSOARG00020015604) #17	AGAP3 (ENSOARG00020015226) #18	TMUB1 (ENSOARG00020015189) #19	FASTK (ENSOARG00020014849) #20	SLC4A2 (ENSOARG00020013776) #21	CDK5 (ENSOARG00020013601) #22	ASIC3 (ENSOARG00020013472) #23	ABCB8 (ENSOARG00020013103) #24	ATG9B (ENSOARG00020012880) #25	NOS3 (ENSOARG00020012006) #26	KCNH2 (ENSOARG00020011748) #27	AOC1 (ENSOARG00020011675) #28	ENSOARG00020011618 #29	TMEM176B (ENSOARG00020011490) #30	ENSOARG00020011433 #32	ENSOARG00020011396 #32	ENSOARG00020011351 #33	GIMAP2 (ENSOARG00020011302) #34	ENSOARG00020011251 #35	ENSOARG00020011218	ENSOARG00020011190 #33
Bovinae	ANCESTRAL SPECIES	8	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000174020.b	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.pb.b.a.b #32	ENSGT00940000154844.qb.a.a #32	ENSGT00940000161272.p #33	ENSGT00940000162548.h.a #35	ENSGT00940000159317.e.c #36	ENSGT00940000159509.l.a.a.a.b	ENSGT00940000159509.l.a.a.a.a
Bos	ANCESTRAL SPECIES	8	ENSGT00940000161049 #10	ENSGT00390000010557.f #11	ENSGT00940000174020.b	ENSGT00390000010557.e #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586.l #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.pb.b.a.b #32	ENSGT00940000154844.qb.a.a.c #32	ENSGT00940000161272.p.b #33	ENSGT00940000163457 #34	ENSGT00940000163384.h	ENSGT00940000162548.h.a #35	ENSGT00940000159317.e.c #36
Bos_a	ANCESTRAL SPECIES	37	ENSGT00940000161049 #10	ENSGT00390000010557.f #11	ENSGT00390000010557.e #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586.l #18	ENSGT00940000159586.k #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.pb.b.a.b #32	ENSGT00940000161272.p.b #33	ENSGT00940000162548.h.a #35	ENSGT00940000159317.e.c #36	ENSGT00940000159509.l.b	ENSGT00940000154844.pb.b.a.a.a #32	ENSGT00940000159509.k
Domestic yak	MODERN SPECIES	23	RHEB (ENSBGRG00000007747) #7	CRYGN (ENSBGRG00000007698) #9	WDR86 (ENSBGRG00000007613) #10	NUB1 (ENSBGRG00000007414) #11	SMARCD3 (ENSBGRG00000006961) #12	CHPF2 (ENSBGRG00000006836) #13	ABCF2 (ENSBGRG00000006782) #14	IQCA1L (ENSBGRG00000006649) #15	ASB10 (ENSBGRG00000006572) #16	GBX1 (ENSBGRG00000006543) #17	ENSBGRG00000006498 #18	ENSBGRG00000006360 #18	ENSBGRG00000006308 #19	FASTK (ENSBGRG00000006171) #20	SLC4A2 (ENSBGRG00000005825) #21	CDK5 (ENSBGRG00000005577) #22	ASIC3 (ENSBGRG00000005367) #23	ABCB8 (ENSBGRG00000004984) #24	ATG9B (ENSBGRG00000004875) #25	NOS3 (ENSBGRG00000004423) #26	KCNH2 (ENSBGRG00000004337) #27	AOC1 (ENSBGRG00000004317) #28	ENSBGRG00000004276 #29	TMEM176B (ENSBGRG00000004186) #30	ENSBGRG00000004140 #32	ENSBGRG00000004096 #32	GIMAP1 (ENSBGRG00000004080) #33	ENSBGRG00000004056 #35	ENSBGRG00000004050	ENSBGRG00000018664	ENSBGRG00000018485 #32
Wild yak	MODERN SPECIES	2153												ENSBMUG00000003958 #18	TMUB1 (ENSBMUG00000003897) #19	FASTK (ENSBMUG00000003858) #20	SLC4A2 (ENSBMUG00000003722) #21	CDK5 (ENSBMUG00000003645) #22	ASIC3 (ENSBMUG00000003568) #23	ABCB8 (ENSBMUG00000003486) #24	ATG9B (ENSBMUG00000003337) #25	ENSBMUG00000003263 #26
Bos_b	ANCESTRAL SPECIES	7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557.f #11	ENSGT00940000174020.b	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a.a.b	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586.l #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.qb.a.a.d #32	ENSGT00940000154844.pb.b.a.b #32	ENSGT00940000161272.p.b #33	ENSGT00940000163384.h	ENSGT00940000162548.h.a #35	ENSGT00940000159317.e.c #36	ENSGT00940000159509.l.a.a.a.b
Cow	MODERN SPECIES	23	WDR86 (ENSBTAG00000006232) #10	NUB1 (ENSBTAG00000004540) #11	ENSBTAG00000048514	SMARCD3 (ENSBTAG00000014372) #12	CHPF2 (ENSBTAG00000014371) #13	ABCF2 (ENSBTAG00000000607) #14	H2BK1 (ENSBTAG00000024204)	IQCA1L (ENSBTAG00000018838) #15	GBX1 (ENSBTAG00000011120) #17	ASB10 (ENSBTAG00000016752) #16	AGAP3 (ENSBTAG00000008468) #18	ENSBTAG00000048379 #18	TMUB1 (ENSBTAG00000011229) #19	FASTK (ENSBTAG00000011228) #20	SLC4A2 (ENSBTAG00000011226) #21	CDK5 (ENSBTAG00000007766) #22	ASIC3 (ENSBTAG00000007762) #23	ABCB8 (ENSBTAG00000007759) #24	ATG9B (ENSBTAG00000012031) #25	NOS3 (ENSBTAG00000017680) #26	KCNH2 (ENSBTAG00000004078) #27	AOC1 (ENSBTAG00000005419) #28	TMEM176A (ENSBTAG00000012078) #29	TMEM176B (ENSBTAG00000016766) #30	ENSBTAG00000000715 #32	GIMAP5 (ENSBTAG00000004894) #32	ENSBTAG00000037510 #33	GIMAP7 (ENSBTAG00000008550)	ENSBTAG00000050052 #35	ENSBTAG00000054649 #36	ENSBTAG00000040331 #33
Hybrid Bos Indicus	MODERN SPECIES	23	WDR86 (ENSBIXG00005002048) #10	NUB1 (ENSBIXG00005014623) #11	ENSBIXG00005014608	SMARCD3 (ENSBIXG00005002031) #12	CHPF2 (ENSBIXG00005014539) #13	ENSBIXG00005014498	ABCF2 (ENSBIXG00005014490) #14	ENSBIXG00005014463	IQCA1L (ENSBIXG00005005975) #15	ASB10 (ENSBIXG00005014395) #16	GBX1 (ENSBIXG00005014362) #17	AGAP3 (ENSBIXG00005014321) #18	TMUB1 (ENSBIXG00005014014) #19	FASTK (ENSBIXG00005013959) #20	SLC4A2 (ENSBIXG00005013838) #21	CDK5 (ENSBIXG00005013731) #22	ASIC3 (ENSBIXG00005013698) #23	ABCB8 (ENSBIXG00005013652) #24	ATG9B (ENSBIXG00005013382) #25	NOS3 (ENSBIXG00005001575) #26	KCNH2 (ENSBIXG00005013224) #27	AOC1 (ENSBIXG00005013184) #28	ENSBIXG00005013159 #29	TMEM176B (ENSBIXG00005013069) #30	ENSBIXG00005001479 #32	ENSBIXG00005012983 #32	ENSBIXG00005012941 #33	ENSBIXG00005012922 #35	ENSBIXG00005012913 #36	ENSBIXG00005012895	ENSBIXG00005012866 #33
American bison	MODERN SPECIES	3293	CRYGN (ENSBBBG00000015352) #9	WDR86 (ENSBBBG00000003820) #10	NUB1 (ENSBBBG00000015340) #11	ENSBBBG00000015320	SMARCD3 (ENSBBBG00000001258) #12	CHPF2 (ENSBBBG00000001310) #13	ABCF2 (ENSBBBG00000001327) #14	ENSBBBG00000001354	IQCA1L (ENSBBBG00000001363) #15	ASB10 (ENSBBBG00000001385) #16	GBX1 (ENSBBBG00000002754) #17	AGAP3 (ENSBBBG00000015309) #18	FASTK (ENSBBBG00000003795) #20	TMUB1 (ENSBBBG00000003766) #19	ENSBBBG00000015173 #21	CDK5 (ENSBBBG00000003543) #22	ASIC3 (ENSBBBG00000003750) #23	ENSBBBG00000015114 #24	ATG9B (ENSBBBG00000015091) #25	NOS3 (ENSBBBG00000015062) #26	KCNH2 (ENSBBBG00000014939) #27	AOC1 (ENSBBBG00000000843) #28	TMEM176A (ENSBBBG00000000895) #29	TMEM176B (ENSBBBG00000000940) #30	ENSBBBG00000001022 #32	ENSBBBG00000001032 #32	ENSBBBG00000001039	WDR1 (ENSBBBG00000001048)	ZNF518B (ENSBBBG00000001154)	CLNK (ENSBBBG00000001160)	ENSBBBG00000001214
Siberian musk deer	MODERN SPECIES	302	RHEB (ENSMMSG00000009606) #7	CRYGN (ENSMMSG00000009651) #9	WDR86 (ENSMMSG00000009684) #10	NUB1 (ENSMMSG00000009723) #11	SMARCD3 (ENSMMSG00000009749) #12	CHPF2 (ENSMMSG00000009840) #13	ABCF2 (ENSMMSG00000009907) #14	ENSMMSG00000009985	IQCA1L (ENSMMSG00000010011) #15	ASB10 (ENSMMSG00000010120) #16	GBX1 (ENSMMSG00000010197) #17	AGAP3 (ENSMMSG00000010288) #18	TMUB1 (ENSMMSG00000011167) #19	FASTK (ENSMMSG00000011201) #20	SLC4A2 (ENSMMSG00000011369) #21	CDK5 (ENSMMSG00000011686) #22	ASIC3 (ENSMMSG00000011742) #23	ABCB8 (ENSMMSG00000011816) #24	ATG9B (ENSMMSG00000012043) #25	NOS3 (ENSMMSG00000012097) #26	KCNH2 (ENSMMSG00000012336) #27	AOC1 (ENSMMSG00000012437) #28	TMEM176A (ENSMMSG00000012456) #29	TMEM176B (ENSMMSG00000012481) #30	ENSMMSG00000012525 #32	ENSMMSG00000012539 #32	ENSMMSG00000012561
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	9	PRKAG2 (ENSCHYG00000025875)	ENSCHYG00000025861 #7	CRYGN (ENSCHYG00000025847) #9	WDR86 (ENSCHYG00000025818) #10	ENSCHYG00000025805 #11	SMARCD3 (ENSCHYG00000025775) #12	CHPF2 (ENSCHYG00000025749) #13	ABCF2 (ENSCHYG00000025724) #14	H2BK1 (ENSCHYG00000025712)	IQCA1L (ENSCHYG00000025653) #15	ASB10 (ENSCHYG00000025556) #16	ENSCHYG00000025530 #18	TMUB1 (ENSCHYG00000025506) #19	FASTK (ENSCHYG00000025431) #20	SLC4A2 (ENSCHYG00000025201) #21	CDK5 (ENSCHYG00000025073) #22	ASIC3 (ENSCHYG00000025028) #23	ABCB8 (ENSCHYG00000024838) #24	ATG9B (ENSCHYG00000024764) #25	NOS3 (ENSCHYG00000024489) #26	KCNH2 (ENSCHYG00000024378) #27	AOC1 (ENSCHYG00000024344) #28	TMEM176A (ENSCHYG00000024273) #29	TMEM176B (ENSCHYG00000024182) #30	ENSCHYG00000024155 #32	ENSCHYG00000024129 #32	ENSCHYG00000024115 #33	GIMAP2 (ENSCHYG00000024079) #34	ENSCHYG00000024065	ENSCHYG00000024031	GIMAP6 (ENSCHYG00000024009) #35
Yarkand deer	MODERN SPECIES	283																ENSCHYG00000009283 #22
Laurasiatheria_b	ANCESTRAL SPECIES	14	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159509	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000161272 #33
Laurasiatheria_c	ANCESTRAL SPECIES	13	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.ac #32	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000162462
Chiroptera	ANCESTRAL SPECIES	53	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.ac #32	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000162462
Microchiroptera	ANCESTRAL SPECIES	23	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.ac #32	ENSGT00940000161272 #33	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000162462
Greater horseshoe bat	MODERN SPECIES	18	RHEB (ENSRFEG00010018447) #7	ENSRFEG00010018498 #9	WDR86 (ENSRFEG00010018622) #10	NUB1 (ENSRFEG00010018655) #11	SMARCD3 (ENSRFEG00010018701) #12	CHPF2 (ENSRFEG00010018797) #13	ABCF2 (ENSRFEG00010018857) #14	H2BK1 (ENSRFEG00010018889)	IQCA1L (ENSRFEG00010018923) #15	ASB10 (ENSRFEG00010019108) #16	GBX1 (ENSRFEG00010019221) #17	AGAP3 (ENSRFEG00010019272) #18	TMUB1 (ENSRFEG00010019593) #19	FASTK (ENSRFEG00010019637) #20	SLC4A2 (ENSRFEG00010019830) #21	CDK5 (ENSRFEG00010019910) #22	ASIC3 (ENSRFEG00010019990) #23	ABCB8 (ENSRFEG00010020032) #24	ATG9B (ENSRFEG00010020224) #25	NOS3 (ENSRFEG00010020247) #26	KCNH2 (ENSRFEG00010020296) #27	AOC1 (ENSRFEG00010020404) #28	TMEM176B (ENSRFEG00010020426) #30	GIMAP5 (ENSRFEG00010020447) #32	ENSRFEG00010020462 #33	GIMAP2 (ENSRFEG00010020481) #34	GIMAP6 (ENSRFEG00010020500) #35	GIMAP4 (ENSRFEG00010020507) #36	GIMAP7 (ENSRFEG00010020512)	ENSRFEG00010020522 #33	GIMAP8 (ENSRFEG00010020534)
Microbat	MODERN SPECIES	1273		PRKAG2 (ENSMLUG00000004316)	RHEB (ENSMLUG00000004309) #7	WDR86 (ENSMLUG00000016902) #10	NUB1 (ENSMLUG00000001722) #11	SMARCD3 (ENSMLUG00000003550) #12	CHPF2 (ENSMLUG00000003546) #13	ABCF2 (ENSMLUG00000003539) #14	IQCA1L (ENSMLUG00000003532) #15	ASB10 (ENSMLUG00000022523) #16	GBX1 (ENSMLUG00000005993) #17	AGAP3 (ENSMLUG00000005985) #18	TMUB1 (ENSMLUG00000030300) #19	FASTK (ENSMLUG00000014730) #20	SLC4A2 (ENSMLUG00000014717) #21	CDK5 (ENSMLUG00000014708) #22	ASIC3 (ENSMLUG00000028175) #23	ABCB8 (ENSMLUG00000014699) #24	ATG9B (ENSMLUG00000014690) #25	NOS3 (ENSMLUG00000014674) #26	ENSMLUG00000022247	KCNH2 (ENSMLUG00000014660) #27	ENSMLUG00000024534 #28	ENSMLUG00000025402 #28	ENSMLUG00000017116 #28	ENSMLUG00000007315 #29	TMEM176B (ENSMLUG00000007295) #30	ENSMLUG00000007287 #32	ENSMLUG00000025954 #32	ENSMLUG00000029924	GIMAP2 (ENSMLUG00000003659) #34
Megabat	MODERN SPECIES	1932													ENSPVAG00000007099	FASTK (ENSPVAG00000007095) #20	SLC4A2 (ENSPVAG00000007093) #21	CDK5 (ENSPVAG00000007092) #22	ASIC3 (ENSPVAG00000007091) #23	ABCB8 (ENSPVAG00000007090) #24	ATG9B (ENSPVAG00000007087) #25	NOS3 (ENSPVAG00000007086) #26
Equus	ANCESTRAL SPECIES	49	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557.h #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.ac.b.a #32	ENSGT00940000159509.h.a	ENSGT00940000159317.n #36	ENSGT00940000162548 #35	ENSGT00940000163457.d #34	ENSGT00940000161272.x #33	ENSGT00940000154844.ac.b.b #32
Donkey	MODERN SPECIES	11	RHEB (ENSEASG00005001996) #7	CRYGN (ENSEASG00005002002) #9	ENSEASG00005002012 #10	NUB1 (ENSEASG00005002017) #11	SMARCD3 (ENSEASG00005002024) #12	CHPF2 (ENSEASG00005002034) #13	ABCF2 (ENSEASG00005002063) #14	H2BK1 (ENSEASG00005031671)	IQCA1L (ENSEASG00005002429) #15	ASB10 (ENSEASG00005002445) #16	GBX1 (ENSEASG00005002451) #17	AGAP3 (ENSEASG00005002516) #18	TMUB1 (ENSEASG00005035932) #19	FASTK (ENSEASG00005002707) #20	SLC4A2 (ENSEASG00005002860) #21	CDK5 (ENSEASG00005004101) #22	ASIC3 (ENSEASG00005004542) #23	ABCB8 (ENSEASG00005004594) #24	ATG9B (ENSEASG00005004887) #25	NOS3 (ENSEASG00005005024) #26	KCNH2 (ENSEASG00005006585) #27	AOC1 (ENSEASG00005006701) #28	TMEM176A (ENSEASG00005032760) #29	ENSEASG00005006706 #30	ENSEASG00005032614 #32	ENSEASG00005034950 #32	ENSEASG00005027517	ENSEASG00005035594 #36	ENSEASG00005028730 #33	ENSEASG00005031305 #34
Carnivora	ANCESTRAL SPECIES	15	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159509	ENSGT00940000159317 #36	ENSGT00940000163384	ENSGT00940000161272 #33
Caniformia	ANCESTRAL SPECIES	11	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000161272 #33	ENSGT00940000162462
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a.f.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000161272 #33	ENSGT00940000162462
Canis_lupus	ANCESTRAL SPECIES	29	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a.f.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a.q #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000159509	ENSGT00940000161272 #33	ENSGT00940000162462
Dog	MODERN SPECIES	7	RHEB (ENSCAFG00845011138) #7	CRYGN (ENSCAFG00845011093) #9	ENSCAFG00845011044 #10	NUB1 (ENSCAFG00845010982) #11	SMARCD3 (ENSCAFG00845010900) #12	CHPF2 (ENSCAFG00845010813) #13	ABCF2 (ENSCAFG00845010733) #14	ENSCAFG00845010707	IQCA1L (ENSCAFG00845010574) #15	ASB10 (ENSCAFG00845010514) #16	GBX1 (ENSCAFG00845010471) #17	AGAP3 (ENSCAFG00845009839) #18	TMUB1 (ENSCAFG00845009600) #19	FASTK (ENSCAFG00845009458) #20	SLC4A2 (ENSCAFG00845009099) #21	CDK5 (ENSCAFG00845008961) #22	ASIC3 (ENSCAFG00845008838) #23	ABCB8 (ENSCAFG00845010330) #24	ATG9B (ENSCAFG00845010124) #25	KCNH2 (ENSCAFG00845009911) #27	ENSCAFG00845009791 #28	ENSCAFG00845009739 #29	TMEM176B (ENSCAFG00845009643) #30	GIMAP5 (ENSCAFG00845009592) #32	GIMAP2 (ENSCAFG00845009569) #34	GIMAP6 (ENSCAFG00845009549) #35	GIMAP7 (ENSCAFG00845009515)	GIMAP4 (ENSCAFG00845009482) #36	ENSCAFG00845009460 #33	GIMAP8 (ENSCAFG00845009438)	ENSCAFG00845009414
Dingo	MODERN SPECIES	77	RHEB (ENSCAFG00020005505) #7	CRYGN (ENSCAFG00020005512) #9	ENSCAFG00020005513 #10	NUB1 (ENSCAFG00020005516) #11	SMARCD3 (ENSCAFG00020005525) #12	CHPF2 (ENSCAFG00020005543) #13	ABCF2 (ENSCAFG00020005588) #14	ENSCAFG00020006253	IQCA1L (ENSCAFG00020006259) #15	ASB10 (ENSCAFG00020006275) #16	GBX1 (ENSCAFG00020006284) #17	AGAP3 (ENSCAFG00020006288) #18	TMUB1 (ENSCAFG00020006304) #19	FASTK (ENSCAFG00020006312) #20	SLC4A2 (ENSCAFG00020006323) #21	CDK5 (ENSCAFG00020006340) #22	ASIC3 (ENSCAFG00020006395) #23	ABCB8 (ENSCAFG00020006413) #24	ATG9B (ENSCAFG00020006422) #25	NOS3 (ENSCAFG00020006433) #26	KCNH2 (ENSCAFG00020006442) #27	ENSCAFG00020006448 #28	ENSCAFG00020006459 #28	ENSCAFG00020006462 #29	ENSCAFG00020006466 #30	ENSCAFG00020006478 #32	ENSCAFG00020006487 #32	GIMAP2 (ENSCAFG00020006491) #34	ENSCAFG00020006496 #35	GIMAP4 (ENSCAFG00020006498) #36	GIMAP7 (ENSCAFG00020006501)
Red fox	MODERN SPECIES	14	RHEB (ENSVVUG00000007512) #7	ENSVVUG00000007519 #9	WDR86 (ENSVVUG00000007526) #10	NUB1 (ENSVVUG00000007531) #11	SMARCD3 (ENSVVUG00000007547) #12	CHPF2 (ENSVVUG00000007685) #13	ABCF2 (ENSVVUG00000007701) #14	ENSVVUG00000007717	IQCA1L (ENSVVUG00000007723) #15	ASB10 (ENSVVUG00000007759) #16	GBX1 (ENSVVUG00000007770) #17	AGAP3 (ENSVVUG00000007800) #18	TMUB1 (ENSVVUG00000008395) #19	FASTK (ENSVVUG00000008400) #20	SLC4A2 (ENSVVUG00000008410) #21	CDK5 (ENSVVUG00000008427) #22	ASIC3 (ENSVVUG00000008442) #23	ABCB8 (ENSVVUG00000008449) #24	ATG9B (ENSVVUG00000008473) #25	NOS3 (ENSVVUG00000008495) #26	KCNH2 (ENSVVUG00000008543) #27	AOC1 (ENSVVUG00000009125) #28	ENSVVUG00000009128 #29	TMEM176B (ENSVVUG00000009131) #30	ENSVVUG00000009136 #32	ENSVVUG00000009146 #32	GIMAP2 (ENSVVUG00000009149) #34	ENSVVUG00000009155 #35	GIMAP4 (ENSVVUG00000009157) #36	GIMAP8 (ENSVVUG00000009161)	ENSVVUG00000009168
Caniformia_b	ANCESTRAL SPECIES	9	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000159509	ENSGT00940000163457 #34	ENSGT00940000163384	ENSGT00940000162462	ENSGT01030000234781.a	ENSGT01030000234781.b
Ursidae	ANCESTRAL SPECIES	44	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000159509	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159317 #36	ENSGT00940000162462	ENSGT01030000234781.a
Ursus	ANCESTRAL SPECIES	116	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000159509.i	ENSGT00940000163457.e #34
American black bear	MODERN SPECIES	565				SMARCD3 (ENSUAMG00000022736) #12	CHPF2 (ENSUAMG00000022737) #13	ABCF2 (ENSUAMG00000022739) #14	H2BK1 (ENSUAMG00000022742)	IQCA1L (ENSUAMG00000022744) #15	ASB10 (ENSUAMG00000022746) #16	GBX1 (ENSUAMG00000022747) #17	ENSUAMG00000022749 #18	ENSUAMG00000022750 #18	TMUB1 (ENSUAMG00000022751) #19	FASTK (ENSUAMG00000022753) #20	SLC4A2 (ENSUAMG00000022754) #21	CDK5 (ENSUAMG00000022755) #22	ASIC3 (ENSUAMG00000022757) #23	ABCB8 (ENSUAMG00000022758) #24	ATG9B (ENSUAMG00000022759) #25	NOS3 (ENSUAMG00000022770) #26	KCNH2 (ENSUAMG00000025111) #27	AOC1 (ENSUAMG00000025164) #28	TMEM176A (ENSUAMG00000025165) #29	TMEM176B (ENSUAMG00000025166) #30
Polar bear	MODERN SPECIES	151	PRKAG2 (ENSUMAG00000016133)	ENSUMAG00000016148 #9	ENSUMAG00000016172 #10	NUB1 (ENSUMAG00000016184) #11	SMARCD3 (ENSUMAG00000016198) #12	CHPF2 (ENSUMAG00000016237) #13	ABCF2 (ENSUMAG00000016249) #14	H2BK1 (ENSUMAG00000016256)	IQCA1L (ENSUMAG00000016259) #15	ASB10 (ENSUMAG00000016267) #16	ENSUMAG00000016269 #18	ENSUMAG00000016273 #18	TMUB1 (ENSUMAG00000016278) #19	FASTK (ENSUMAG00000016282) #20	SLC4A2 (ENSUMAG00000016320) #21	CDK5 (ENSUMAG00000016639) #22	ASIC3 (ENSUMAG00000016647) #23	ABCB8 (ENSUMAG00000016697) #24	NOS3 (ENSUMAG00000017206) #26	KCNH2 (ENSUMAG00000018080) #27	AOC1 (ENSUMAG00000018096) #28	TMEM176A (ENSUMAG00000018103) #29	TMEM176B (ENSUMAG00000018119) #30	ENSUMAG00000018133 #32	ENSUMAG00000018150	ENSUMAG00000018156 #34
Mustelinae	ANCESTRAL SPECIES	79	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000163384	ENSGT00940000162462	ENSGT01030000234781.a	ENSGT01030000234781.b	ENSGT01100000263519.A.b.b.b.a.a	ENSGT00940000162588	ENSGT00390000016226
American mink	MODERN SPECIES	66	RHEB (ENSNVIG00000000981) #7	CRYGN (ENSNVIG00000000997) #9	WDR86 (ENSNVIG00000001009) #10	NUB1 (ENSNVIG00000001023) #11	SMARCD3 (ENSNVIG00000001073) #12	CHPF2 (ENSNVIG00000001128) #13	ABCF2 (ENSNVIG00000001162) #14	IQCA1L (ENSNVIG00000001225) #15	ASB10 (ENSNVIG00000001255) #16	GBX1 (ENSNVIG00000001315) #17	AGAP3 (ENSNVIG00000001325) #18	TMUB1 (ENSNVIG00000001393) #19	FASTK (ENSNVIG00000001416) #20	SLC4A2 (ENSNVIG00000001488) #21	ENSNVIG00000001714	CDK5 (ENSNVIG00000001727) #22	ASIC3 (ENSNVIG00000001812) #23	ABCB8 (ENSNVIG00000001850) #24	NOS3 (ENSNVIG00000001958) #26	KCNH2 (ENSNVIG00000002065) #27	AOC1 (ENSNVIG00000002101) #28	T176A (ENSNVIG00000002113) #29	T176B (ENSNVIG00000002156) #30	ENSNVIG00000002223 #33	ENSNVIG00000002229	ENSNVIG00000002246	ENSNVIG00000002264	ENSNVIG00000002292	REPIN1 (ENSNVIG00000002306)	RARRES2 (ENSNVIG00000002332)	LRRC61 (ENSNVIG00000002366)
Ferret	MODERN SPECIES	279	WDR86 (ENSMPUG00000008970) #10	NUB1 (ENSMPUG00000008958) #11	ENSMPUG00000008950	ENSMPUG00000019970	SMARCD3 (ENSMPUG00000008936) #12	CHPF2 (ENSMPUG00000008929) #13	ABCF2 (ENSMPUG00000008915) #14	IQCA1L (ENSMPUG00000008812) #15	ASB10 (ENSMPUG00000008799) #16	ENSMPUG00000019969	GBX1 (ENSMPUG00000008793) #17	AGAP3 (ENSMPUG00000008780) #18	TMUB1 (ENSMPUG00000008775) #19	FASTK (ENSMPUG00000008727) #20	SLC4A2 (ENSMPUG00000008413) #21	CDK5 (ENSMPUG00000008335) #22	ASIC3 (ENSMPUG00000008222) #23	ABCB8 (ENSMPUG00000008082) #24	ATG9B (ENSMPUG00000007969) #25	NOS3 (ENSMPUG00000007580) #26	ENSMPUG00000007577	KCNH2 (ENSMPUG00000007562) #27	AOC1 (ENSMPUG00000007554) #28	TMEM176A (ENSMPUG00000007514) #29	TMEM176B (ENSMPUG00000007508) #30	ENSMPUG00000007495	ENSMPUG00000007472	ENSMPUG00000007400	RARRES2 (ENSMPUG00000007351)	LRRC61 (ENSMPUG00000019967)	ATP6V0E2 (ENSMPUG00000007307)
Felidae	ANCESTRAL SPECIES	13	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159509	ENSGT00940000159317.j #36	ENSGT00940000163384	ENSGT00940000161272.y.a #33
Panthera	ANCESTRAL SPECIES	46	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000159509	ENSGT00940000159317.j #36	ENSGT00940000163457 #34	ENSGT00940000162548 #35
Tiger	MODERN SPECIES	265	GALNTL5 (ENSPTIG00000013607)	PRKAG2 (ENSPTIG00000013407)	RHEB (ENSPTIG00000013359) #7	ENSPTIG00000013238 #9	NUB1 (ENSPTIG00000013162) #11	SMARCD3 (ENSPTIG00000013138) #12	ENSPTIG00000013130 #13	ABCF2 (ENSPTIG00000013101) #14	IQCA1L (ENSPTIG00000013076) #15	ASB10 (ENSPTIG00000013053) #16	GBX1 (ENSPTIG00000013038) #17	AGAP3 (ENSPTIG00000012996) #18	TMUB1 (ENSPTIG00000012977) #19	FASTK (ENSPTIG00000012926) #20	SLC4A2 (ENSPTIG00000012818) #21	CDK5 (ENSPTIG00000012765) #22	ASIC3 (ENSPTIG00000012706) #23	ABCB8 (ENSPTIG00000012586) #24	ATG9B (ENSPTIG00000012546) #25	NOS3 (ENSPTIG00000012483) #26	AOC1 (ENSPTIG00000012449) #28	TMEM176A (ENSPTIG00000012435) #29	TMEM176B (ENSPTIG00000012421) #30	GIMAP5 (ENSPTIG00000012405) #32	ENSPTIG00000012396	ENSPTIG00000012391 #36	GIMAP2 (ENSPTIG00000012381) #34
Panthera_a	ANCESTRAL SPECIES	51	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844 #32	ENSGT00940000163384.e	ENSGT00940000159317.j #36	ENSGT00940000163457 #34	ENSGT00940000162548 #35	ENSGT00940000159509	ENSGT00940000161272.y.a #33
lion	MODERN SPECIES	2	RHEB (ENSPLOG00000002939) #7	CRYGN (ENSPLOG00000002923) #9	WDR86 (ENSPLOG00000002892) #10	NUB1 (ENSPLOG00000002844) #11	SMARCD3 (ENSPLOG00000002776) #12	CHPF2 (ENSPLOG00000002726) #13	ABCF2 (ENSPLOG00000002700) #14	H2BK1 (ENSPLOG00000002682)	IQCA1L (ENSPLOG00000002657) #15	ASB10 (ENSPLOG00000002608) #16	GBX1 (ENSPLOG00000002579) #17	AGAP3 (ENSPLOG00000002439) #18	TMUB1 (ENSPLOG00000002365) #19	FASTK (ENSPLOG00000002324) #20	SLC4A2 (ENSPLOG00000002150) #21	CDK5 (ENSPLOG00000002074) #22	ASIC3 (ENSPLOG00000002018) #23	ABCB8 (ENSPLOG00000001916) #24	ATG9B (ENSPLOG00000001855) #25	NOS3 (ENSPLOG00000001778) #26	KCNH2 (ENSPLOG00000001712) #27	AOC1 (ENSPLOG00000001671) #28	TMEM176A (ENSPLOG00000001650) #29	TMEM176B (ENSPLOG00000001612) #30	GIMAP5 (ENSPLOG00000001592) #32	GIMAP8 (ENSPLOG00000001578)	ENSPLOG00000001567	ENSPLOG00000001558	REPIN1 (ENSPLOG00000001543)	RARRES2 (ENSPLOG00000001529)	LRRC61 (ENSPLOG00000001466)
leopard	MODERN SPECIES	100	RHEB (ENSPPRG00000018707) #7	ENSPPRG00000018897 #9	ENSPPRG00000019709 #10	NUB1 (ENSPPRG00000024641) #11	SMARCD3 (ENSPPRG00000024235) #12	CHPF2 (ENSPPRG00000023952) #13	ABCF2 (ENSPPRG00000023745) #14	IQCA1L (ENSPPRG00000023462) #15	ASB10 (ENSPPRG00000023152) #16	GBX1 (ENSPPRG00000023012) #17	AGAP3 (ENSPPRG00000001536) #18	TMUB1 (ENSPPRG00000002433) #19	FASTK (ENSPPRG00000003158) #20	SLC4A2 (ENSPPRG00000005905) #21	ENSPPRG00000006452	CDK5 (ENSPPRG00000006745) #22	ASIC3 (ENSPPRG00000007379) #23	ABCB8 (ENSPPRG00000008733) #24	ATG9B (ENSPPRG00000009108) #25	NOS3 (ENSPPRG00000010638) #26	KCNH2 (ENSPPRG00000011346) #27	AOC1 (ENSPPRG00000011726) #28	TMEM176A (ENSPPRG00000013912) #29	TMEM176B (ENSPPRG00000016488) #30	GIMAP5 (ENSPPRG00000017393) #32	ENSPPRG00000018266	ENSPPRG00000020973 #36	GIMAP2 (ENSPPRG00000022402) #34	GIMAP6 (ENSPPRG00000000827) #35	ENSPPRG00000018352	ENSPPRG00000001007 #33
Cat	MODERN SPECIES	1	CRYGN (ENSFCAG00000013249) #9	RHEB (ENSFCAG00000012862) #7	WDR86 (ENSFCAG00000028189) #10	NUB1 (ENSFCAG00000013247) #11	SMARCD3 (ENSFCAG00000013208) #12	CHPF2 (ENSFCAG00000013207) #13	ABCF2 (ENSFCAG00000013206) #14	H2BK1 (ENSFCAG00000050168)	IQCA1L (ENSFCAG00000013205) #15	ASB10 (ENSFCAG00000013202) #16	GBX1 (ENSFCAG00000013201) #17	AGAP3 (ENSFCAG00000013200) #18	TMUB1 (ENSFCAG00000022328) #19	FASTK (ENSFCAG00000013198) #20	SLC4A2 (ENSFCAG00000013197) #21	CDK5 (ENSFCAG00000024658) #22	ASIC3 (ENSFCAG00000019041) #23	ABCB8 (ENSFCAG00000013195) #24	ATG9B (ENSFCAG00000013193) #25	NOS3 (ENSFCAG00000013191) #26	KCNH2 (ENSFCAG00000013799) #27	AOC1 (ENSFCAG00000031201) #28	TMEM176A (ENSFCAG00000013797) #29	TMEM176B (ENSFCAG00000013796) #30	GIMAP5 (ENSFCAG00000042622) #32	ENSFCAG00000041167 #34	GIMAP6 (ENSFCAG00000041878) #35	ENSFCAG00000052718	ENSFCAG00000047778 #33	GIMAP8 (ENSFCAG00000011441)	ENSFCAG00000046371
Atlantogenata	ANCESTRAL SPECIES	90	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000155153.A	ENSGT00940000156207.b
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000160805 #22
Armadillo	MODERN SPECIES	1543		ZNF354A (ENSDNOG00000043806)	ENSDNOG00000007717	PROP1 (ENSDNOG00000001260)	ENSDNOG00000041971	FLT4 (ENSDNOG00000048259)	SCGB3A1 (ENSDNOG00000001206)	SMARCD3 (ENSDNOG00000008824) #12	CHPF2 (ENSDNOG00000039901) #13	ABCF2 (ENSDNOG00000004954) #14	ASB10 (ENSDNOG00000032483) #16	GBX1 (ENSDNOG00000045375) #17	AGAP3 (ENSDNOG00000034647) #18	TMUB1 (ENSDNOG00000045011) #19	FASTK (ENSDNOG00000032359) #20	CDK5 (ENSDNOG00000039046) #22	SLC4A2 (ENSDNOG00000012761) #21	ABCB8 (ENSDNOG00000032182) #24	ATG9B (ENSDNOG00000009875) #25	NOS3 (ENSDNOG00000009848) #26	KCNH2 (ENSDNOG00000012134) #27	AOC1 (ENSDNOG00000049392) #28	TMEM176A (ENSDNOG00000046252) #29	TMEM176B (ENSDNOG00000044550) #30	ENSDNOG00000031843	ENSDNOG00000047276
Afrotheria	ANCESTRAL SPECIES	150		ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30
Tenrec	MODERN SPECIES	7248																ENSETEG00000017053 #22	ABCB8 (ENSETEG00000017047) #24	ATG9B (ENSETEG00000017044) #25	NOS3 (ENSETEG00000017037) #26
Afrotheria_a	ANCESTRAL SPECIES	156		ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30
Elephant	MODERN SPECIES	49	ENSLAFG00000028452 #29	PRKAG2 (ENSLAFG00000012000)	RHEB (ENSLAFG00000000691) #7	CRYGN (ENSLAFG00000012102) #9	WDR86 (ENSLAFG00000007235) #10	NUB1 (ENSLAFG00000007232) #11	SMARCD3 (ENSLAFG00000008678) #12	CHPF2 (ENSLAFG00000008676) #13	ABCF2 (ENSLAFG00000008670) #14	IQCA1L (ENSLAFG00000022998) #15	ASB10 (ENSLAFG00000008662) #16	AGAP3 (ENSLAFG00000030437) #18	TMUB1 (ENSLAFG00000032444) #19	FASTK (ENSLAFG00000008796) #20	SLC4A2 (ENSLAFG00000008790) #21	CDK5 (ENSLAFG00000008785) #22	ASIC3 (ENSLAFG00000020597) #23	ABCB8 (ENSLAFG00000008773) #24	ATG9B (ENSLAFG00000026645) #25	NOS3 (ENSLAFG00000007006) #26	KCNH2 (ENSLAFG00000003073) #27	ENSLAFG00000014523 #28	ENSLAFG00000029554 #28	ENSLAFG00000027480 #29	ENSLAFG00000007076 #30	SLC25A26 (ENSLAFG00000013666)	ENSLAFG00000013671	KBTBD8 (ENSLAFG00000002923)	SUCLG2 (ENSLAFG00000015283)	TAFA4 (ENSLAFG00000004079)	EOGT (ENSLAFG00000004080)
Hyrax	MODERN SPECIES	3255													TMUB1 (ENSPCAG00000007616) #19	FASTK (ENSPCAG00000007566) #20	SLC4A2 (ENSPCAG00000007420) #21	CDK5 (ENSPCAG00000007347) #22	ASIC3 (ENSPCAG00000007264) #23	ABCB8 (ENSPCAG00000007148) #24	ATG9B (ENSPCAG00000007080) #25	NOS3 (ENSPCAG00000006963) #26	KCNH2 (ENSPCAG00000006876) #27
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00940000158227	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.bc #32	ENSGT00940000154844.cc.a #32	ENSGT00940000159317 #36	ENSGT00940000159509.o.a	ENSGT00940000154844.cc.b #32	ENSGT00940000162548 #35	ENSGT00940000159509.o.b
Marsupialia_b	ANCESTRAL SPECIES	10	ENSGT00940000165841	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.bc #32	ENSGT00940000154844.cc.a #32	ENSGT00940000159317 #36	ENSGT00940000159509.o.a	ENSGT00940000154844.cc.b #32	ENSGT00940000162548 #35	ENSGT00940000159509.o.b
Diprotodontia	ANCESTRAL SPECIES	41	ENSGT00940000158227	ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.bc #32	ENSGT00940000162462	ENSGT00940000159317 #36	ENSGT00940000159509.o.a	ENSGT00940000154844.cc.b #32	ENSGT00940000162548 #35	ENSGT00940000159509.o.b
Diprotodontia_a	ANCESTRAL SPECIES	67		ENSGT00950000183019.f.a	ENSGT00940000159945 #7	ENSGT00940000159301 #9	ENSGT00940000161049 #10	ENSGT00390000010557 #11	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00530000064074.a #29	ENSGT00530000064074.b #30	ENSGT00940000154844.bc #32	ENSGT00940000154844.cc.a #32	ENSGT00940000159317.a #36	ENSGT00940000159317.b #36	ENSGT00940000159509.o.a	ENSGT00940000154844.cc.b #32	ENSGT00940000162548 #35
Common wonbat	MODERN SPECIES	1078	ENSVURG00010008159	PRKAG2 (ENSVURG00010008136)	RHEB (ENSVURG00010008110) #7	CRYGN (ENSVURG00010008095) #9	WDR86 (ENSVURG00010008079) #10	NUB1 (ENSVURG00010008064) #11	SMARCD3 (ENSVURG00010008048) #12	CHPF2 (ENSVURG00010008023) #13	H2BK1 (ENSVURG00010008015)	ABCF2 (ENSVURG00010007993) #14	ASB10 (ENSVURG00010007961) #16	GBX1 (ENSVURG00010007956) #17	AGAP3 (ENSVURG00010007876) #18	TMUB1 (ENSVURG00010007844) #19	SLC4A2 (ENSVURG00010007742) #21	CDK5 (ENSVURG00010007698) #22	ABCB8 (ENSVURG00010007671) #24	ATG9B (ENSVURG00010007651) #25	NOS3 (ENSVURG00010007576) #26	KCNH2 (ENSVURG00010007542) #27	AOC1 (ENSVURG00010007381) #28	ENSVURG00010007361 #29	ENSVURG00010007355 #30	ENSVURG00010007346 #32	ENSVURG00010007342 #35	ENSVURG00010007334 #32	ENSVURG00010007332 #36	ENSVURG00010007323	ENSVURG00010007316 #36	ENSVURG00010007310 #36	ENSVURG00010007301 #36
koala	MODERN SPECIES	325			RHEB (ENSPCIG00000003392) #7	CRYGN (ENSPCIG00000000704) #9	WDR86 (ENSPCIG00000006094) #10	NUB1 (ENSPCIG00000006095) #11	SMARCD3 (ENSPCIG00000006102) #12	CHPF2 (ENSPCIG00000006104) #13	ABCF2 (ENSPCIG00000006105) #14	IQCA1L (ENSPCIG00000006107) #15	ASB10 (ENSPCIG00000006110) #16	GBX1 (ENSPCIG00000006115) #17	AGAP3 (ENSPCIG00000006122) #18	TMUB1 (ENSPCIG00000036350) #19	SLC4A2 (ENSPCIG00000006136) #21	CDK5 (ENSPCIG00000006139) #22	ASIC3 (ENSPCIG00000006142) #23	ABCB8 (ENSPCIG00000006154) #24	ATG9B (ENSPCIG00000006158) #25	NOS3 (ENSPCIG00000006159) #26	KCNH2 (ENSPCIG00000008685) #27	AOC1 (ENSPCIG00000008669) #28	ENSPCIG00000008664 #29	ENSPCIG00000008662 #30	ENSPCIG00000008658 #32	ENSPCIG00000031841	ENSPCIG00000026522 #36	ENSPCIG00000034088 #32	ENSPCIG00000026520 #36	ENSPCIG00000016007 #36	ENSPCIG00000016010 #35
Wallaby	MODERN SPECIES	7100															SLC4A2 (ENSMEUG00000000557) #21	CDK5 (ENSMEUG00000000546) #22
Opossum	MODERN SPECIES	7	GALNT11 (ENSMODG00000004710)	PRKAG2 (ENSMODG00000004614)	RHEB (ENSMODG00000048800) #7	CRYGN (ENSMODG00000004555) #9	WDR86 (ENSMODG00000004545) #10	NUB1 (ENSMODG00000004476) #11	ENSMODG00000024179	SMARCD3 (ENSMODG00000004451) #12	CHPF2 (ENSMODG00000004429) #13	ABCF2 (ENSMODG00000004420) #14	ASB10 (ENSMODG00000004367) #16	GBX1 (ENSMODG00000004356) #17	ENSMODG00000004345 #18	TMUB1 (ENSMODG00000004243) #19	SLC4A2 (ENSMODG00000004225) #21	CDK5 (ENSMODG00000004076) #22	ENSMODG00000004046 #23	ABCB8 (ENSMODG00000003937) #24	ATG9B (ENSMODG00000003913) #25	NOS3 (ENSMODG00000003903) #26	KCNH2 (ENSMODG00000003798) #27	AOC1 (ENSMODG00000003706) #28	ENSMODG00000036833	ENSMODG00000003685 #29	GIMAP5 (ENSMODG00000036664) #32	ENSMODG00000045817	ENSMODG00000046696 #36	ENSMODG00000003644	ENSMODG00000003652 #32	GIMAP6 (ENSMODG00000043634) #35	ENSMODG00000003627
Sauria	ANCESTRAL SPECIES	53					ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT01030000234607.A.a.b.a ##20	ENSGT00940000161501	ENSGT00390000016168.a	ENSGT00940000158053	ENSGT00390000008812.b.a	ENSGT00940000157687	ENSGT01030000234856	ENSGT00940000158130	ENSGT00940000171891
Lepidosauria	ANCESTRAL SPECIES	156						ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23
Episquamata	ANCESTRAL SPECIES	42						ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23
Laterata	ANCESTRAL SPECIES	64				ENSGT00940000160466	ENSGT00730000110943.B	ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00950000183207.a #28	ENSGT00940000159846 #27	ENSGT00940000161389 #26	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000163250.A.c.a.a.a	ENSGT00550000075103	ENSGT00390000010170.a.b.w.a	ENSGT00390000010170.a.b.w.b	ENSGT00940000153866.A.b	ENSGT00390000014380.b	ENSGT00940000161437.c.b
Argentine black and white tegu	MODERN SPECIES	5			ENSSMRG00000001663	CIB3 (ENSSMRG00000001657)	SUSD2 (ENSSMRG00000001631)	SMARCD3 (ENSSMRG00000001597) #12	CHPF2 (ENSSMRG00000001594) #13	ABCF2 (ENSSMRG00000001574) #14	IQCA1L (ENSSMRG00000001491) #15	ASB10 (ENSSMRG00000001475) #16	GBX1 (ENSSMRG00000001471) #17	AGAP3 (ENSSMRG00000001353) #18	TMUB1 (ENSSMRG00000001352) #19	FASTK (ENSSMRG00000001344) #20	SLC4A2 (ENSSMRG00000001303) #21	CDK5 (ENSSMRG00000001302) #22	ENSSMRG00000001300 #23	ENSSMRG00000001298	ENSSMRG00000001287	ENSSMRG00000001274	AOC1 (ENSSMRG00000001265) #28	KCNH2 (ENSSMRG00000001252) #27	NOS3 (ENSSMRG00000001202) #26	ATG9B (ENSSMRG00000001201) #25	ABCB8 (ENSSMRG00000001196) #24	ENSSMRG00000001193	ENSSMRG00000001189	MRPS12 (ENSSMRG00000001187)	ENSSMRG00000001181 #30	ENSSMRG00000001179	ENSSMRG00000001175
Common wall lizard	MODERN SPECIES	3	CIB3 (ENSPMRG00000013711)	ENSPMRG00000013708	SUSD2 (ENSPMRG00000013627)	SMARCD3 (ENSPMRG00000013559) #12	CHPF2 (ENSPMRG00000013529) #13	ABCF2 (ENSPMRG00000013513) #14	IQCA1L (ENSPMRG00000013497) #15	ASB10 (ENSPMRG00000013490) #16	GBX1 (ENSPMRG00000023765) #17	AGAP3 (ENSPMRG00000023595) #18	TMUB1 (ENSPMRG00000023514) #19	FASTK (ENSPMRG00000023509) #20	SLC4A2 (ENSPMRG00000023397) #21	ENSPMRG00000023374	ENSPMRG00000023372	CDK5 (ENSPMRG00000023366) #22	ENSPMRG00000023347	ENSPMRG00000023343 #28	ENSPMRG00000023337 #28	KCNH2 (ENSPMRG00000023317) #27	NOS3 (ENSPMRG00000022736) #26	ATG9B (ENSPMRG00000022524) #25	ABCB8 (ENSPMRG00000022418) #24	ENSPMRG00000022399	MRPS12 (ENSPMRG00000022396)	ENSPMRG00000022393	ENSPMRG00000022382	ENSPMRG00000022378	ENSPMRG00000022374	ENSPMRG00000022373
Archelosauria	ANCESTRAL SPECIES	58					ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000154067.d #15	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00390000016226	ENSGT00390000006479	ENSGT00510000050353	ENSGT00940000162497	ENSGT00940000155829
Archosauria	ANCESTRAL SPECIES	58						ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT01100000264168	ENSGT01100000263520.b.b	ENSGT00390000016226	ENSGT00390000006479	ENSGT00940000162497	ENSGT00940000155829
Aves	ANCESTRAL SPECIES	57						ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT01100000264168	ENSGT01100000263520.b.b	ENSGT00390000016226	ENSGT00390000006479	ENSGT00940000162497	ENSGT00940000155829
Neognathae	ANCESTRAL SPECIES							ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT00940000162081 #23	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00940000161747.p	ENSGT00940000155153.B	ENSGT00940000160737	ENSGT00940000159742.i.b	ENSGT00940000159742.j	ENSGT00940000158279	ENSGT00940000156347
Neognathae_b	ANCESTRAL SPECIES	45						ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT00390000016226	ENSGT00390000006479	ENSGT00940000162497
Neognathae_c	ANCESTRAL SPECIES	46						ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28
Kakapo	MODERN SPECIES		BRD9 (ENSSHBG00005004612)	TRIP13 (ENSSHBG00005004617)	TPPP (ENSSHBG00005004621)	SLC9A3 (ENSSHBG00005004629)	LRRC14B (ENSSHBG00005004635)	ENSSHBG00005004647 #12	CHPF2 (ENSSHBG00005004661) #13	ABCF2 (ENSSHBG00005004667) #14	H2BK1 (ENSSHBG00005004671)	ENSSHBG00005004675 #16	GBX1 (ENSSHBG00005004678) #17	AGAP3 (ENSSHBG00005004683) #18	TMUB1 (ENSSHBG00005004686) #19	FASTK (ENSSHBG00005004693) #20	SLC4A2 (ENSSHBG00005004702) #21	CDK5 (ENSSHBG00005004712) #22	ENSSHBG00005004719	ABCB8 (ENSSHBG00005004724) #24	ATG9B (ENSSHBG00005004732) #25	NOS3 (ENSSHBG00005004827) #26	KCNH2 (ENSSHBG00005005208) #27	AOC1 (ENSSHBG00005005222) #28	ENSSHBG00005005225	ENSSHBG00005005234	ENSSHBG00005005242	ENSSHBG00005005264	ENSSHBG00005005282	ENSSHBG00005005289	LRRC61 (ENSSHBG00005005300)	ENSSHBG00005005307	ENSSHBG00005005319
Golden eagle	MODERN SPECIES	19						ENSACCG00020001442 #12	CHPF2 (ENSACCG00020001392) #13	ABCF2 (ENSACCG00020001369) #14	H2BK1 (ENSACCG00020001345)	ASB10 (ENSACCG00020001329) #16	GBX1 (ENSACCG00020001309) #17	AGAP3 (ENSACCG00020001282) #18	TMUB1 (ENSACCG00020001257) #19	FASTK (ENSACCG00020001237) #20	SLC4A2 (ENSACCG00020001185) #21	CDK5 (ENSACCG00020001137) #22	ENSACCG00020001072	ENSACCG00020001029	ABCB8 (ENSACCG00020001013) #24	ATG9B (ENSACCG00020000993) #25	KCNH2 (ENSACCG00020000819) #27	AOC1 (ENSACCG00020000404) #28	ENSACCG00020000385	ENSACCG00020000359	ENSACCG00020000339	ENSACCG00020000323	ENSACCG00020000312	ENSACCG00020000302	ZNF467 (ENSACCG00020000299)	LRRC61 (ENSACCG00020016010)	ENSACCG00020016000
Passeriformes	ANCESTRAL SPECIES							ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT01030000234607.A.a.b.a ##20	ENSGT00940000161501	ENSGT00390000016168.a	ENSGT00940000157687	ENSGT00940000158130	ENSGT00390000011734	ENSGT00440000034270	ENSGT00940000156347	ENSGT00940000158279	ENSGT00940000159742.i.a
Passeriformes_d	ANCESTRAL SPECIES							ENSGT00940000158945 #12	ENSGT01050000244857.B.a #13	ENSGT00630000089910 #14	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000014069.a #19	ENSGT01030000234607.A.a.a.b #20	ENSGT00940000158259 #21	ENSGT00940000160805 #22	ENSGT00940000159126 #24	ENSGT00390000014839.a #25	ENSGT00940000161389 #26	ENSGT00940000159846 #27	ENSGT00950000183207.a #28	ENSGT01030000234607.A.a.b.a ##20	ENSGT00940000161501	ENSGT00390000016168.a	ENSGT00940000157687	ENSGT00940000158130	ENSGT00390000011734	ENSGT00440000034270	ENSGT00940000156347	ENSGT00940000158279	ENSGT00940000159742.i.a
Flycatcher	MODERN SPECIES	11						ENSFALG00000025394 #12	CHPF2 (ENSFALG00000013203) #13	ABCF2 (ENSFALG00000013201) #14	ASB10 (ENSFALG00000013197) #16	GBX1 (ENSFALG00000013190) #17	ENSFALG00000027833	ENSFALG00000013154 #18	ENSFALG00000025825 #18	FASTK (ENSFALG00000013118) #20	SLC4A2 (ENSFALG00000013084) #21	CDK5 (ENSFALG00000013070) #22	PTPN23 (ENSFALG00000002089)	SCAP (ENSFALG00000002078)	ELP6 (ENSFALG00000024848)	CSPG5 (ENSFALG00000002068)	SMARCC1 (ENSFALG00000002035)	DHX30 (ENSFALG00000002009)	ENSFALG00000026536	ENSFALG00000002003	ENSFALG00000027815	CDC25A (ENSFALG00000001992)	ENSFALG00000001987	ENSFALG00000026081	ENSFALG00000001980	ENSFALG00000028764	ENSFALG00000001977
Great tit	MODERN SPECIES	11	ARF1 (ENSPMJG00000003968)	ENSPMJG00000003967	WNT3A (ENSPMJG00000003960)	WNT9A (ENSPMJG00000003940)	ENSPMJG00000003920 #12	CHPF2 (ENSPMJG00000003917) #13	ABCF2 (ENSPMJG00000003914) #14	H2BK1 (ENSPMJG00000003913)	ASB10 (ENSPMJG00000003911) #16	GBX1 (ENSPMJG00000003909) #17	AGAP3 (ENSPMJG00000003897) #18	ENSPMJG00000003896	TMUB1 (ENSPMJG00000003895) #19	FASTK (ENSPMJG00000003892) #20	SLC4A2 (ENSPMJG00000003885) #21	CDK5 (ENSPMJG00000003878) #22	ENSPMJG00000003874	ABCB8 (ENSPMJG00000003864) #24	ENSPMJG00000003862 #25	ENSPMJG00000003860 #26	ENSPMJG00000003854	ENSPMJG00000003777	AOC1 (ENSPMJG00000003771) #28	ENSPMJG00000003767	MYL3 (ENSPMJG00000003759)	ENSPMJG00000003752	PTH1R (ENSPMJG00000003744)	ENSPMJG00000003737	ENSPMJG00000003504	SETD2 (ENSPMJG00000003499)	KIF9 (ENSPMJG00000003382)
Anura	ANCESTRAL SPECIES	353															ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000165425.l	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18
Frog	MODERN SPECIES	6	ENSXETG00000048341	ENSXETG00000047241	ENSXETG00000047107	ENSXETG00000041785	ENSXETG00000048040	ENSXETG00000047693	ENSXETG00000040849	ENSXETG00000043357	ENSXETG00000049147	ENSXETG00000044851	ENSXETG00000044628	kcnh6 (ENSXETG00000048773) #27	nos3 (ENSXETG00000011979) #26	atg9b (ENSXETG00000011985) #25	abcb8 (ENSXETG00000011958) #24	cdk5 (ENSXETG00000041359) #22	ENSXETG00000011986	ENSXETG00000035479	ENSXETG00000034944	aoc1 (ENSXETG00000011988) #28	ENSXETG00000039377	ENSXETG00000042231	ENSXETG00000044671	GBX1 (ENSXETG00000046945) #17	ENSXETG00000046033	agap3 (ENSXETG00000044698) #18	MGC64513 (ENSXETG00000046329)	slc4a2 (ENSXETG00000048904) #21	ENSXETG00000042720	ENSXETG00000043008	ENSXETG00000042838
Leishan spiny toad	MODERN SPECIES	8	WNT3A (ENSLLEG00000028256)	ENSLLEG00000028228	ARF1 (ENSLLEG00000028197)	C1orf35 (ENSLLEG00000028170)	ENSLLEG00000028158	ENSLLEG00000028147	MINDY4 (ENSLLEG00000027995)	AQP1 (ENSLLEG00000027945)	ADCYAP1R1 (ENSLLEG00000027888)	ENSLLEG00000027866	VIPR1 (ENSLLEG00000027820)	ENSLLEG00000027808	ENSLLEG00000027722	ENSLLEG00000027617	ABCB8 (ENSLLEG00000027448) #24	CDK5 (ENSLLEG00000027283) #22	ENSLLEG00000027258	ENSLLEG00000027237	ENSLLEG00000027225	DNAJC19 (ENSLLEG00000027169)	ENSLLEG00000027158	ENSLLEG00000027145	ENSLLEG00000027091	ENSLLEG00000027068	CRHR2 (ENSLLEG00000026826)	ENSLLEG00000026648	ENSLLEG00000026622	ENSLLEG00000026566	ENSLLEG00000026544	VILL (ENSLLEG00000025543)	PLCD1 (ENSLLEG00000025076)
Coelacanth	MODERN SPECIES	1784														ENSLACG00000009369	TTC19 (ENSLACG00000008943)	CDK5 (ENSLACG00000008473) #22	asic1c (ENSLACG00000005717)
Actinopterygii	ANCESTRAL SPECIES	576														ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535
Reedfish	MODERN SPECIES	14	pigm (ENSECRG00000001709)	abcb8 (ENSECRG00000001688) #24	RAMP3 (ENSECRG00000001661)	ENSECRG00000001648	ENSECRG00000001637	ENSECRG00000001561	wnt9a (ENSECRG00000001487)	ENSECRG00000001447	jmjd4 (ENSECRG00000001405)	snap47 (ENSECRG00000001376)	guk1b (ENSECRG00000001335)	ENSECRG00000001304	ENSECRG00000001284	ENSECRG00000001067	ENSECRG00000000899	cdk5 (ENSECRG00000000869) #22	gjc2 (ENSECRG00000000803)	iba57 (ENSECRG00000006840)	asic1c (ENSECRG00000006684)	ENSECRG00000006665	ENSECRG00000006661	ENSECRG00000006656	ENSECRG00000006651	ENSECRG00000006647	ENSECRG00000006643	zgc:92591 (ENSECRG00000006640)	zgc:153738 (ENSECRG00000006521) ##15	asb10 (ENSECRG00000006485) #16	gbx1 (ENSECRG00000006476) #17	AGAP3 (ENSECRG00000006448) #18	ENSECRG00000006442
Neopterygii	ANCESTRAL SPECIES	315														ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT01050000244857.B.a #13	ENSGT00390000009194	ENSGT00400000022514	ENSGT00940000158259 #21	ENSGT00940000165754	ENSGT01030000234607.A.a.a.b #20	ENSGT00400000024709
Spotted gar	MODERN SPECIES	675	ENSLOCG00000009117	ENSLOCG00000009126	ENSLOCG00000009134	ENSLOCG00000009158	ENSLOCG00000009140	guk1b (ENSLOCG00000009170)	zgc:63882 (ENSLOCG00000009188)	ARF1 (ENSLOCG00000009197)	wnt3a (ENSLOCG00000009208)	wnt9a (ENSLOCG00000009215)	snap47 (ENSLOCG00000009233)	jmjd4 (ENSLOCG00000009240)	ENSLOCG00000009256	atg9b (ENSLOCG00000009263) #25	abcb8 (ENSLOCG00000009275) #24	cdk5 (ENSLOCG00000009292) #22	ENSLOCG00000009298	ENSLOCG00000009314	ENSLOCG00000018126	zgc:153738 (ENSLOCG00000009323) ##15	asb10 (ENSLOCG00000009338) #16	gbx1 (ENSLOCG00000009350) #17	AGAP3 (ENSLOCG00000009358) #18	ENSLOCG00000009383	ENSLOCG00000018127	tmub1 (ENSLOCG00000009394) #19	iba57 (ENSLOCG00000009395)	gjc2 (ENSLOCG00000018128)	ENSLOCG00000009405	CYP8B1 (ENSLOCG00000018129)	ACKR2 (ENSLOCG00000009409)
Osteoglossocephalai	ANCESTRAL SPECIES	127	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.a.b	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00970000196942	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00390000014654	ENSGT00940000163032	ENSGT00990000204685
Osteoglossiformes	ANCESTRAL SPECIES	36	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.a.b	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000167421	ENSGT00940000177117	ENSGT00940000177473	ENSGT00940000154756.B	ENSGT00940000154756.A	ENSGT00940000166913	ENSGT00970000196942	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974.cb #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00940000159059.h	ENSGT00940000157153.y	ENSGT00940000159347.e	ENSGT00940000157354.j	ENSGT00940000154843.F.a	ENSGT00940000156328.a.a.b	ENSGT00940000158092.p
Asian bonytongue	MODERN SPECIES	22	snap47 (ENSSFOG00015009631)	wnt9a (ENSSFOG00015030621)	wnt3a (ENSSFOG00015009551)	ARF1 (ENSSFOG00015009538)	zgc:63882 (ENSSFOG00015009520)	guk1a (ENSSFOG00015031278)	ENSSFOG00015009441	ENSSFOG00015028600	ENSSFOG00015030541	ENSSFOG00015009380	ENSSFOG00015009339	ENSSFOG00015009333	ENSSFOG00015009318	atg9b (ENSSFOG00015009299) #25	abcb8 (ENSSFOG00015009232) #24	cdk5 (ENSSFOG00015009165) #22	asic1c (ENSSFOG00015009088)	zgc:92591 (ENSSFOG00015028630)	asb10 (ENSSFOG00015009013) #16	gbx1 (ENSSFOG00015032296) #17	AGAP3 (ENSSFOG00015008908) #18	RB1CC1 (ENSSFOG00015008736)	ENSSFOG00015008666	ENSSFOG00015008619	irf4a (ENSSFOG00015008571)	dusp22b (ENSSFOG00015008499)	ripk1l (ENSSFOG00015008445)	slc22a23 (ENSSFOG00015008389)	DSP (ENSSFOG00015008351)	TNS3 (ENSSFOG00015008230)	IGFBP3 (ENSSFOG00015025701)
P. kingsleyae	MODERN SPECIES	15	wnt3a (ENSPKIG00000005529)	ARF1 (ENSPKIG00000005488)	zgc:63882 (ENSPKIG00000005451)	guk1a (ENSPKIG00000005424)	ENSPKIG00000005403	ENSPKIG00000005378	ENSPKIG00000005347	ENSPKIG00000005336	ENSPKIG00000005320	ENSPKIG00000005312	ENSPKIG00000005292	ENSPKIG00000005273	ENSPKIG00000005248	atg9b (ENSPKIG00000005206) #25	abcb8 (ENSPKIG00000005114) #24	cdk5 (ENSPKIG00000005046) #22	ENSPKIG00000004980	zgc:92591 (ENSPKIG00000004929)	asb10 (ENSPKIG00000004900) #16	gbx1 (ENSPKIG00000004870) #17	AGAP3 (ENSPKIG00000004850) #18	RB1CC1 (ENSPKIG00000004705)	ENSPKIG00000004448	ENSPKIG00000004373	irf4a (ENSPKIG00000004352)	dusp22b (ENSPKIG00000004330)	ripk1l (ENSPKIG00000004307)	slc22a23 (ENSPKIG00000004246)	DSP (ENSPKIG00000004145)	TNS3 (ENSPKIG00000004086)	ENSPKIG00000004066
Clupeocephala	ANCESTRAL SPECIES	105	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.a.b	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00970000196942	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a	ENSGT00740000115534.a.b	ENSGT01050000244824.A
Otomorpha	ANCESTRAL SPECIES	302														ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727.b	ENSGT00940000164727.a.a	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032
Otophysi	ANCESTRAL SPECIES	246	ENSGT00740000115534.a.b	ENSGT00940000154681.a	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586 #18	ENSGT00940000154365.a.a #17	ENSGT00940000158974 #16	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727.a.a	ENSGT00940000164727.b	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22
Characiphysae	ANCESTRAL SPECIES	146	ENSGT00940000154511.b	ENSGT00740000115534.a.b	ENSGT00940000154681.a	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586 #18	ENSGT00940000154365.a.a #17	ENSGT00940000158974 #16	ENSGT01100000263569.a.a	ENSGT00940000164727.a.a	ENSGT00940000164727.b	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22
Characiphysae_b	ANCESTRAL SPECIES	137	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586 #18	ENSGT00940000154365.a.a #17	ENSGT00940000158974 #16	ENSGT01100000263569.a.a	ENSGT00940000164727.b	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00390000005900	ENSGT00550000075078	ENSGT00940000163949.a	ENSGT00950000183160.A	ENSGT00470000042293.a.b.a.b	ENSGT00940000156497.b	ENSGT00950000183080.a.b.b.a.a	ENSGT00940000158710	ENSGT00940000157961.A.d.a	ENSGT00940000156292.g.a	ENSGT01030000234667.a.a.a.a.a
Characoidei	ANCESTRAL SPECIES	60	ENSGT00940000163032	ENSGT01050000244824.A	ENSGT00740000115534.a.b	ENSGT00940000154681.a	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586 #18	ENSGT00940000154365.a.a #17	ENSGT00940000158974 #16	ENSGT01100000263569.a.a	ENSGT00940000164727.b	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00530000063273.b.a.b.a.b.h	ENSGT00390000005900	ENSGT00550000075078	ENSGT00940000163949.a	ENSGT00950000183160.A	ENSGT00470000042293.a.b.a.b	ENSGT00940000156497.b	ENSGT00950000183080.a.b.b.a.a	ENSGT00940000158710	ENSGT00940000157961.A.d.a	ENSGT00940000156292.g.a	ENSGT01030000234667.a.a.a.a.a	ENSGT00940000179222	ENSGT00940000165400	ENSGT01030000234592.A.b.b.b.a
Red-bellied piranha	MODERN SPECIES	70										zgc:92591 (ENSPNAG00000014843)	ENSPNAG00000003270	ENSPNAG00000003260	ENSPNAG00000014788	atg9b (ENSPNAG00000014770) #25	abcb8 (ENSPNAG00000003242) #24	cdk5 (ENSPNAG00000014690) #22	agr2 (ENSPNAG00000003198)	NAGLU (ENSPNAG00000014612)	coasy (ENSPNAG00000014589)	ENSPNAG00000003173	pus3 (ENSPNAG00000014541)	grnb (ENSPNAG00000003156)	ENSPNAG00000003149	arf2b (ENSPNAG00000006183)	GRB7 (ENSPNAG00000014468)	ENSPNAG00000014410	SRCIN1 (ENSPNAG00000014388)	FMNL1 (ENSPNAG00000014303)	ENSPNAG00000014244	ccr10 (ENSPNAG00000014227)	ENSPNAG00000014225
Mexicana tetra	MODERN SPECIES	1	stmn2a (ENSAMXG00000033761)	upp1 (ENSAMXG00000043246)	ENSAMXG00000038383	rbm12bb (ENSAMXG00000041973)	ENSAMXG00000016455	ENSAMXG00000041676	ENSAMXG00000033602	ENSAMXG00000031944	AGAP3 (ENSAMXG00000036323) #18	gbx1 (ENSAMXG00000029184) #17	asb10 (ENSAMXG00000033260) #16	zgc:92591 (ENSAMXG00000030579)	asic1c (ENSAMXG00000037812)	atg9b (ENSAMXG00000013271) #25	abcb8 (ENSAMXG00000013262) #24	cdk5 (ENSAMXG00000013249) #22	agr2 (ENSAMXG00000029121)	NAGLU (ENSAMXG00000043894)	coasy (ENSAMXG00000019477)	ENSAMXG00000019493	pus3 (ENSAMXG00000019534)	grnb (ENSAMXG00000019572)	ENSAMXG00000034609	arf2b (ENSAMXG00000037485)	GRB7 (ENSAMXG00000019623)	SRCIN1 (ENSAMXG00000019651)	ENSAMXG00000019668	ENSAMXG00000038901	ENSAMXG00000042613	ENSAMXG00000025831	iglon5 (ENSAMXG00000017059)
Electric eel	MODERN SPECIES	358								ENSEEEG00000000704	AGAP3 (ENSEEEG00000000756) #18	gbx1 (ENSEEEG00000000985) #17	asb10 (ENSEEEG00000000986) #16	zgc:92591 (ENSEEEG00000000987)	ENSEEEG00000000989	atg9b (ENSEEEG00000000990) #25	abcb8 (ENSEEEG00000000996) #24	cdk5 (ENSEEEG00000001000) #22	agr2 (ENSEEEG00000001001)	NAGLU (ENSEEEG00000001002)	coasy (ENSEEEG00000001007)	ENSEEEG00000001010	pus3 (ENSEEEG00000001012)	grnb (ENSEEEG00000001016)	arf2b (ENSEEEG00000001023)	GRB7 (ENSEEEG00000001027)	srcin1b (ENSEEEG00000001029)	ENSEEEG00000001030	ENSEEEG00000001032
Channel catfish	MODERN SPECIES		ENSIPUG00000000120	ENSIPUG00000000119	ENSIPUG00000000117	ENSIPUG00000000116	ENSIPUG00000000115	ENSIPUG00000000114	ENSIPUG00000000113	tmem14cb (ENSIPUG00000000112)	pak1ip1 (ENSIPUG00000000111)	psme1 (ENSIPUG00000000110)	pck2 (ENSIPUG00000000109)	Arf2 (ENSIPUG00000000108)	ENSIPUG00000000107	grn (ENSIPUG00000000106)	pus3 (ENSIPUG00000000105)	cdk5 (ENSIPUG00000000104) #22	CERS2 (ENSIPUG00000000103)	ENSIPUG00000000102	ENSIPUG00000000101	ENSIPUG00000000100	ENSIPUG00000000099	ENSIPUG00000000098	ENSIPUG00000000097	adamts16 (ENSIPUG00000000096)	ENSIPUG00000000095	irx2 (ENSIPUG00000000094)	irx4a (ENSIPUG00000000093)	LPCAT1 (ENSIPUG00000000091)	c1s.1 (ENSIPUG00000000090)	slc6a3 (ENSIPUG00000000089)	dcdc2 (ENSIPUG00000000088)
Cyprinoidei	ANCESTRAL SPECIES	133	ENSGT00740000115534.a.b.k.a	ENSGT00940000154681.a	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586 #18	ENSGT00940000154365.a.a #17	ENSGT00940000158974 #16	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727.a.a	ENSGT00940000164727.b	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000156056.B.c.b	ENSGT00950000182910.a.b.b	ENSGT00940000164265.C	ENSGT00940000155450.d	ENSGT00390000009127	ENSGT00950000182881.a.a.a	ENSGT00400000022514	ENSGT00940000158259.b #21	ENSGT00400000024709.h.b
Cyprininae	ANCESTRAL SPECIES	32	ENSGT00940000159905.bb	ENSGT00390000015871.f	ENSGT00940000159586.cb #18	ENSGT00940000154365.a.a.b.b #17	ENSGT00940000154681.a.a	ENSGT00950000182863.B.a.d	ENSGT00950000183032.A.b.b.a.b	ENSGT00940000159905.cb	ENSGT00390000015871.e	ENSGT00940000159586.bb #18	ENSGT00940000154365.a.a.b.a #17	ENSGT00940000158974.m.a #16	ENSGT00940000164727.b.d	ENSGT00390000014839.a.f #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000156056.B.c.b.d	ENSGT00950000182910.a.b.b.d	ENSGT00940000164265.C	ENSGT00940000158992	ENSGT00940000155450.d.i	ENSGT00390000009127.l	ENSGT00400000022514.c.a	ENSGT00940000158259.b.b #21	ENSGT00400000024709.h.a.b	ENSGT00400000024709.g.b	ENSGT00940000160430.fb.a	ENSGT00940000164239.b.b.a	ENSGT00390000015564.bc.a	ENSGT00940000167726.b	ENSGT00940000166120
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	100	ENSGT00940000153897.a.w	ENSGT00490000043329.a.a.b.i	ENSGT00940000163032.q	ENSGT01050000244824.A.q	ENSGT00940000154681.a.a	ENSGT00950000182863.B.a.d	ENSGT00950000183032.A.b.b.a.b	ENSGT00940000159905.cb	ENSGT00390000015871.e	ENSGT00940000159586.bb #18	ENSGT00940000154365.a.a.b.a #17	ENSGT00940000158974.m.a #16	ENSGT00940000164727.b.c.b	ENSGT00390000014839.a.f #25	ENSGT00940000159126 #24	ENSGT00940000160805.e #22	ENSGT00940000156056.B.c.b.d	ENSGT00950000182910.a.b.b.d	ENSGT00940000164265.C	ENSGT00940000155450.d.i	ENSGT00390000009127.l	ENSGT00400000022514.c.a	ENSGT00940000158259.b.b #21	ENSGT00400000024709.g.b	ENSGT00940000160430.fb.a	ENSGT00940000164239.b.b.a	ENSGT00390000015564.bc.a	ENSGT00940000167726.b	ENSGT00940000166120	ENSGT00940000158727.b.a.a.b.a	ENSGT00550000074836.p.a
Golden-line barbel	MODERN SPECIES	18	ube2v2 (ENSSGRG00000013000)	snai2 (ENSSGRG00000013111)	SNTG1 (ENSSGRG00000013112)	pcmtd1 (ENSSGRG00000013115)	ENSSGRG00000013117	RB1CC1 (ENSSGRG00000013124)	AGAP3 (ENSSGRG00000014420) #18	gbx1 (ENSSGRG00000014629) #17	asb10 (ENSSGRG00000014630) #16	zgc:92591 (ENSSGRG00000014631)	ENSSGRG00000014632	ENSSGRG00000014633	ENSSGRG00000014634	atg9b (ENSSGRG00000014803) #25	abcb8 (ENSSGRG00000014865) #24	cdk5 (ENSSGRG00000014872) #22	tmeff1b (ENSSGRG00000015019)	cavin4b (ENSSGRG00000015022)	ENSSGRG00000015024	ENSSGRG00000015046	rmc1 (ENSSGRG00000015746)	ENSSGRG00000015900	slc4a2b (ENSSGRG00000015902) #21	ENSSGRG00000015904	si:ch1073-406l10.2 (ENSSGRG00000015905)	zgc:195173 (ENSSGRG00000015906)	nrbp2b (ENSSGRG00000015907)	ENSSGRG00000015909	ca2 (ENSSGRG00000015911)	rdh12l (ENSSGRG00000016270)	ENSSGRG00000016271
Common carp reference	MODERN SPECIES	14	cebpd (ENSCCRG00000070146)	mcm4 (ENSCCRG00000065776)	ube2v2 (ENSCCRG00000072674)	ENSCCRG00000032719	snai2 (ENSCCRG00000059025)	pcmtd1 (ENSCCRG00000066894)	ST18 (ENSCCRG00000010794)	ENSCCRG00000016855	AGAP3 (ENSCCRG00000072061) #18	gbx1 (ENSCCRG00000033066) #17	asb10 (ENSCCRG00000078815) #16	ENSCCRG00000060417	asic1c (ENSCCRG00000063481)	atg9b (ENSCCRG00000016072) #25	abcb8 (ENSCCRG00000067821) #24	cdk5 (ENSCCRG00000016094) #22	tmeff1b (ENSCCRG00000027320)	cavin4b (ENSCCRG00000078039)	ENSCCRG00000030707	rmc1 (ENSCCRG00000030465)	ENSCCRG00000052817	ENSCCRG00000071684	slc4a2b (ENSCCRG00000024649) #21	zgc:195173 (ENSCCRG00000007298)	nrbp2b (ENSCCRG00000027815)	ENSCCRG00000077974	ENSCCRG00000009027	ca2 (ENSCCRG00000065234)	ENSCCRG00000080629	ENSCCRG00000025756	ENSCCRG00000073975
Cyprininae_a	ANCESTRAL SPECIES	140	ENSGT01050000244824.A.r	ENSGT00740000115534.a.b.k.a	ENSGT00940000154681.a.b	ENSGT00950000182863.B.a.c	ENSGT00950000183032.A.b.b.a.a	ENSGT00940000159905.bb	ENSGT00390000015871.f	ENSGT00940000159586.cb #18	ENSGT00940000154365.a.a.b.b #17	ENSGT00940000158974.m.b #16	ENSGT01100000263569.a.a	ENSGT00940000165535.y	ENSGT00940000164727.a.a	ENSGT00940000164727.b.c.a	ENSGT00390000014839.a.e #25	ENSGT00940000160805.f #22
Common carp reference	MODERN SPECIES	40	cebpd (ENSCCRG00000022921)	mcm4 (ENSCCRG00000022924)	ube2v2 (ENSCCRG00000080995)	snai2 (ENSCCRG00000006444)	SNTG1 (ENSCCRG00000006477)	pcmtd1 (ENSCCRG00000080487)	ENSCCRG00000010767	RB1CC1 (ENSCCRG00000016336)	AGAP3 (ENSCCRG00000033152) #18	gbx1 (ENSCCRG00000064481) #17	asb10 (ENSCCRG00000033070) #16	zgc:92591 (ENSCCRG00000025766)	ENSCCRG00000079509	asic1c (ENSCCRG00000016064)	atg9b (ENSCCRG00000053270) #25	cdk5 (ENSCCRG00000016113) #22	tmeff1b (ENSCCRG00000029466)	cavin4b (ENSCCRG00000061698)	ENSCCRG00000029344	ENSCCRG00000029241	rmc1 (ENSCCRG00000027983)	ENSCCRG00000027854	slc4a2b (ENSCCRG00000054244) #21	zgc:195173 (ENSCCRG00000066138)	nrbp2b (ENSCCRG00000052478)	ENSCCRG00000052503	ENSCCRG00000065119	ENSCCRG00000062465	ca2 (ENSCCRG00000059823)	rdh12l (ENSCCRG00000025743)	ENSCCRG00000025736
Goldfish	MODERN SPECIES	16	ENSCARG00000025183	ENSCARG00000025157	ENSCARG00000025114	scn5lab (ENSCARG00000025095)	acvr2ba (ENSCARG00000024627)	ENSCARG00000024589	ENSCARG00000024578	ENSCARG00000024537	ENSCARG00000024506 #11	crygn2 (ENSCARG00000024490) #9	ENSCARG00000024469	ENSCARG00000024450	ENSCARG00000050620	ENSCARG00000050519	atg9b (ENSCARG00000050493) #25	cdk5 (ENSCARG00000050431) #22	tmeff1b (ENSCARG00000050414)	cavin4b (ENSCARG00000050391)	DNAH8 (ENSCARG00000048797)	ENSCARG00000047024	rmc1 (ENSCARG00000046912)	ENSCARG00000046881	slc4a2b (ENSCARG00000037627) #21	si:ch1073-406l10.2 (ENSCARG00000037267)	zgc:195173 (ENSCARG00000037249)	nrbp2b (ENSCARG00000037001)	pcmtd1 (ENSCARG00000036972)	SNTG1 (ENSCARG00000036903)	FMNL1 (ENSCARG00000036835)	SRCIN1 (ENSCARG00000036753)	GRB7 (ENSCARG00000036667)
Zebrafish	MODERN SPECIES	16	ube2v2 (ENSDARG00000028198)	snai2 (ENSDARG00000040046)	SNTG1 (ENSDARG00000061832)	pcmtd1 (ENSDARG00000053152)	RB1CC1 (ENSDARG00000076559)	ENSDARG00000036117	LRRTM2 (ENSDARG00000071374)	ctnna1 (ENSDARG00000102441)	AGAP3 (ENSDARG00000087822) #18	gbx1 (ENSDARG00000071418) #17	asb10 (ENSDARG00000099461) #16	H2BK1 (ENSDARG00000088276)	asic1c (ENSDARG00000098428)	atg9b (ENSDARG00000055292) #25	abcb8 (ENSDARG00000056672) #24	cdk5 (ENSDARG00000056683) #22	tmeff1b (ENSDARG00000056740)	cavin4b (ENSDARG00000056743)	ENSDARG00000093322	ENSDARG00000056888	ENSDARG00000056909	rmc1 (ENSDARG00000029307)	ENSDARG00000103971	ENSDARG00000089075	slc4a2b (ENSDARG00000052330) #21	si:ch1073-406l10.2 (ENSDARG00000089645)	zgc:195173 (ENSDARG00000077138)	nrbp2b (ENSDARG00000009626)	ca2 (ENSDARG00000014488)	ENSDARG00000097630	rdh12l (ENSDARG00000045277)
Clupeiformes	ANCESTRAL SPECIES	168	ENSGT00390000003478	ENSGT00940000159735	ENSGT00940000157634.d	ENSGT00940000156273	ENSGT00940000155917	ENSGT00390000005307	ENSGT00940000157311	ENSGT00390000008565.b	ENSGT00940000160043	ENSGT00940000157207.b	ENSGT00940000156826	ENSGT00940000177713	ENSGT00390000003420.a.b	ENSGT00530000063273.a	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727.b	ENSGT00940000164727.a.a	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00950000182863.B.a	ENSGT00940000154681.a	ENSGT00740000115534.a.b	ENSGT00940000154511.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	14	tfr1a (ENSDCDG00000018503)	fastk (ENSDCDG00000018490) #20	cope (ENSDCDG00000018431)	st6galnac3 (ENSDCDG00000018423)	ST6GALNAC5 (ENSDCDG00000018420)	pigk (ENSDCDG00000017167)	ak5 (ENSDCDG00000017139)	zzz3 (ENSDCDG00000017129)	usp33 (ENSDCDG00000017122)	miga1 (ENSDCDG00000017115)	ENSDCDG00000017076	dnajb4 (ENSDCDG00000017062)	ENSDCDG00000017059	gipc2 (ENSDCDG00000017057)	txndc12 (ENSDCDG00000017055)	cdk5 (ENSDCDG00000016883) #22	ENSDCDG00000016874	ENSDCDG00000016856	zgc:92591 (ENSDCDG00000016827)	asb10 (ENSDCDG00000016821) #16	gbx1 (ENSDCDG00000016815) #17	AGAP3 (ENSDCDG00000016772) #18	ENSDCDG00000016754	RB1CC1 (ENSDCDG00000016749)	AGAP3 (ENSDCDG00000016380) #18	ENSDCDG00000016358	RB1CC1 (ENSDCDG00000014866)	ST18 (ENSDCDG00000014815)	pcmtd1 (ENSDCDG00000014803)	SNTG1 (ENSDCDG00000014769)	SNAI2 (ENSDCDG00000014746)
Denticle herring	MODERN SPECIES	165														gipc2 (ENSDCDG00000012187)	txndc12 (ENSDCDG00000012173)	cdk5 (ENSDCDG00000011748) #22	ENSDCDG00000011739	ENSDCDG00000011730
Atlantic herring	MODERN SPECIES	14	cope (ENSCHAG00000014158)	CERS1 (ENSCHAG00000014120)	st6galnac3 (ENSCHAG00000014108)	ST6GALNAC5 (ENSCHAG00000014093)	pigk (ENSCHAG00000013796)	ak5 (ENSCHAG00000013698)	zzz3 (ENSCHAG00000013570)	usp33 (ENSCHAG00000012239)	miga1 (ENSCHAG00000010992)	fubp1 (ENSCHAG00000010859)	slc25a24l (ENSCHAG00000010845)	dnajb4 (ENSCHAG00000010821)	gipc2 (ENSCHAG00000010797)	txndc12 (ENSCHAG00000010714)	abcb8 (ENSCHAG00000010415) #24	cdk5 (ENSCHAG00000010193) #22	ENSCHAG00000010164	asic1c (ENSCHAG00000010093)	PTPRM (ENSCHAG00000007085)	ENSCHAG00000006979	ENSCHAG00000006966	PTPRM (ENSCHAG00000003875)	ENSCHAG00000003740	ENSCHAG00000003713	TMEM200C (ENSCHAG00000003706)	epb41l3b (ENSCHAG00000001298)	APCDD1 (ENSCHAG00000000749)	ENSCHAG00000000739	vapal (ENSCHAG00000000681)	RAB31 (ENSCHAG00000000556)	ralbp1 (ENSCHAG00000023633)
Euteleosteomorpha	ANCESTRAL SPECIES	10	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00940000165468	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A	ENSGT00940000177117	ENSGT00940000177473	ENSGT00970000196942	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a	ENSGT00740000115534.a.b	ENSGT01050000244824.A
Acanthomorphata	ANCESTRAL SPECIES		ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00940000165468	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00970000196942	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.u.b	ENSGT00970000196942	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032
Pinecone sodierfish	MODERN SPECIES	8	zgc:63882 (ENSMMDG00005018953)	guk1a (ENSMMDG00005018952)	ENSMMDG00005018950	ENSMMDG00005018949	ENSMMDG00005018948	ENSMMDG00005018946	ENSMMDG00005018940	ENSMMDG00005018935	ENSMMDG00005018933	ENSMMDG00005018931	ENSMMDG00005018930	ENSMMDG00005018928	ENSMMDG00005018927	atg9b (ENSMMDG00005018926) #25	abcb8 (ENSMMDG00005018903) #24	cdk5 (ENSMMDG00005018899) #22	ENSMMDG00005018896	ENSMMDG00005018893	zgc:92591 (ENSMMDG00005018891)	asb10 (ENSMMDG00005018888) #16	gbx1 (ENSMMDG00005018886) #17	AGAP3 (ENSMMDG00005017115) #18	RB1CC1 (ENSMMDG00005017063)	ENSMMDG00005017059	pcmtd1 (ENSMMDG00005017058)	ENSMMDG00005017056	ENSMMDG00005017054	ENSMMDG00005017051	pcmtd1 (ENSMMDG00005017050)	SNTG1 (ENSMMDG00005017044)	snai2 (ENSMMDG00005017041)
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.u.b	ENSGT00940000154756.B.u.a	ENSGT00940000178390	ENSGT00940000168428.a	ENSGT00940000168428.b.b.b	ENSGT00940000154756.B.v	ENSGT00940000177473	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032
Tiger tail seahorse	MODERN SPECIES	359															abcb8 (ENSHCOG00000005214) #24	cdk5 (ENSHCOG00000005068) #22
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.u.b	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.v	ENSGT00940000177117	ENSGT00940000167421	ENSGT00940000168428.b.a	ENSGT00940000177273	ENSGT00940000168428.b.b.b	ENSGT00940000154756.B.u.a	ENSGT00940000177473	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.v	ENSGT00940000177117	ENSGT00940000177473	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.v	ENSGT00940000177117	ENSGT00940000177473	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.v	ENSGT00940000177117	ENSGT00940000177473	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00800000125285	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Amphiprion	ANCESTRAL SPECIES	35	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.v	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00800000125285	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
Orange clownfish	MODERN SPECIES	1	wnt9a (ENSAPEG00000002075)	wnt3a (ENSAPEG00000002089)	ENSAPEG00000002101	zgc:63882 (ENSAPEG00000002128)	guk1a (ENSAPEG00000002141)	ENSAPEG00000002168	ENSAPEG00000002230	ENSAPEG00000002250	ENSAPEG00000002271	ENSAPEG00000002295	ENSAPEG00000002309	ENSAPEG00000002320	ENSAPEG00000002326	atg9b (ENSAPEG00000002365) #25	abcb8 (ENSAPEG00000002379) #24	cdk5 (ENSAPEG00000002446) #22	ENSAPEG00000002526	zgc:92591 (ENSAPEG00000002594)	asb10 (ENSAPEG00000002599) #16	gbx1 (ENSAPEG00000002607) #17	AGAP3 (ENSAPEG00000002642) #18	RB1CC1 (ENSAPEG00000002710)	ENSAPEG00000002856	ENSAPEG00000002880	pcmtd1 (ENSAPEG00000002901)	SNTG1 (ENSAPEG00000002923)	ENSAPEG00000002976	snai2 (ENSAPEG00000002983)	ube2v2 (ENSAPEG00000002994)	mcm4 (ENSAPEG00000003037)	cebpd (ENSAPEG00000003115)
Clown anemonefish	MODERN SPECIES	865	gjc2 (ENSAOCG00000020543)	iba57 (ENSAOCG00000020555)	jmjd4 (ENSAOCG00000020561)	snap47 (ENSAOCG00000020572)	wnt9a (ENSAOCG00000020598)	wnt3a (ENSAOCG00000020607)	ENSAOCG00000002158	zgc:63882 (ENSAOCG00000001523)	guk1a (ENSAOCG00000020660)	ENSAOCG00000020708	ENSAOCG00000020759	ENSAOCG00000020793	ENSAOCG00000020832	atg9b (ENSAOCG00000020852) #25	abcb8 (ENSAOCG00000020931) #24	cdk5 (ENSAOCG00000021006) #22	ENSAOCG00000021063	zgc:92591 (ENSAOCG00000021083)	asb10 (ENSAOCG00000021104) #16	gbx1 (ENSAOCG00000021122) #17	AGAP3 (ENSAOCG00000021153) #18	RB1CC1 (ENSAOCG00000021262)	ENSAOCG00000021298	pcmtd1 (ENSAOCG00000021321)
Spiny chromis	MODERN SPECIES	193										GRM5 (ENSAPOG00000018862)	ctsc (ENSAPOG00000018782)	RAB38 (ENSAPOG00000018737)	fzd4 (ENSAPOG00000018721)	atg9b (ENSAPOG00000018681) #25	abcb8 (ENSAPOG00000018667) #24	cdk5 (ENSAPOG00000018606) #22	ENSAPOG00000000506	ENSAPOG00000018475	zgc:92591 (ENSAPOG00000018452)	asb10 (ENSAPOG00000018432) #16	gbx1 (ENSAPOG00000018407) #17	AGAP3 (ENSAPOG00000018399) #18	RB1CC1 (ENSAPOG00000018325)	ST18 (ENSAPOG00000018204)	pcmtd1 (ENSAPOG00000018170)	SNTG1 (ENSAPOG00000018144)
Bicolor damselfish	MODERN SPECIES	2643													ENSSPAG00000011797	atg9b (ENSSPAG00000011808) #25	abcb8 (ENSSPAG00000011830) #24	cdk5 (ENSSPAG00000011886) #22
Cichlidae	ANCESTRAL SPECIES	2	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00940000177117	ENSGT00940000168428.b.a	ENSGT00940000154756.B.v	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00940000153709.B.vb	ENSGT00980000198573.a.b.y.a.b.a.a.a	ENSGT00940000153709.B.wb	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00940000154276	ENSGT00940000153709.B.vb	ENSGT00940000153709.B.wb	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00940000153709.B.wb	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000177117	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Haplochromini_A	ANCESTRAL SPECIES	3	ENSGT00940000153709.B.wb	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000177117	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
P. nyererei	MODERN SPECIES	299	jmjd4 (ENSPNYG00000015884)	snap47 (ENSPNYG00000015873)	wnt9a (ENSPNYG00000015859)	wnt3a (ENSPNYG00000015848)	ENSPNYG00000015827	zgc:63882 (ENSPNYG00000015811)	guk1a (ENSPNYG00000015795)	ENSPNYG00000015759	ENSPNYG00000015745	ENSPNYG00000015731	ENSPNYG00000015724	ENSPNYG00000015705	ENSPNYG00000015682	atg9b (ENSPNYG00000015643) #25	abcb8 (ENSPNYG00000015606) #24	cdk5 (ENSPNYG00000015568) #22	asic1c (ENSPNYG00000015547)	ENSPNYG00000015533	zgc:92591 (ENSPNYG00000015415)	asb10 (ENSPNYG00000015391) #16	gbx1 (ENSPNYG00000015383) #17	AGAP3 (ENSPNYG00000015335) #18	RB1CC1 (ENSPNYG00000015312)	ENSPNYG00000015299	ENSPNYG00000015289	pcmtd1 (ENSPNYG00000015275)	SNTG1 (ENSPNYG00000015239)	snai2 (ENSPNYG00000015217)	ube2v2 (ENSPNYG00000015191)	mcm4 (ENSPNYG00000015161)	cebpd (ENSPNYG00000015118)
Haplochromini_B	ANCESTRAL SPECIES	12	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.u.a	ENSGT00940000177117	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00390000014654	ENSGT00940000163032	ENSGT00490000043329.a.a.b
Eastern happy	MODERN SPECIES	9	wnt3a (ENSACLG00000017362)	ENSACLG00000017387	zgc:63882 (ENSACLG00000017397)	guk1a (ENSACLG00000017431)	ENSACLG00000017499	ENSACLG00000017538	ENSACLG00000017554	ENSACLG00000017562	ENSACLG00000017571	ENSACLG00000017577	ENSACLG00000017604	ENSACLG00000017610	ENSACLG00000017630	atg9b (ENSACLG00000017683) #25	abcb8 (ENSACLG00000017717) #24	cdk5 (ENSACLG00000017765) #22	ENSACLG00000017804	ENSACLG00000017846	zgc:92591 (ENSACLG00000017861)	asb10 (ENSACLG00000017868) #16	gbx1 (ENSACLG00000017884) #17	AGAP3 (ENSACLG00000017938) #18	RB1CC1 (ENSACLG00000018043)	ENSACLG00000018270	pcmtd1 (ENSACLG00000018377)	SNTG1 (ENSACLG00000018409)	snai2 (ENSACLG00000018551)	ube2v2 (ENSACLG00000018591)	mcm4 (ENSACLG00000018617)	ENSACLG00000018702	cebpd (ENSACLG00000018739)
Zebra mbuna	MODERN SPECIES	1100	jmjd4 (ENSMZEG00005024993)	snap47 (ENSMZEG00005024995)	wnt9a (ENSMZEG00005024996)	wnt3a (ENSMZEG00005024998)	ENSMZEG00005025000	zgc:63882 (ENSMZEG00005025001)	guk1a (ENSMZEG00005025004)	ENSMZEG00005025005	ENSMZEG00005025007	ENSMZEG00005025008	ENSMZEG00005025009	ENSMZEG00005025010	ENSMZEG00005025011	atg9b (ENSMZEG00005025014) #25	abcb8 (ENSMZEG00005025019) #24	cdk5 (ENSMZEG00005025020) #22	ENSMZEG00005025031	zgc:92591 (ENSMZEG00005025035)	asb10 (ENSMZEG00005025037) #16	gbx1 (ENSMZEG00005025040) #17	AGAP3 (ENSMZEG00005025043) #18	RB1CC1 (ENSMZEG00005025049)	ENSMZEG00005025056	pcmtd1 (ENSMZEG00005025058)	SNTG1 (ENSMZEG00005025059)	snai2 (ENSMZEG00005025060)	ube2v2 (ENSMZEG00005025061)	mcm4 (ENSMZEG00005025062)	ENSMZEG00005025063	cebpd (ENSMZEG00005025064)	mapre2 (ENSMZEG00005025065)
Burton s mouthbrooder	MODERN SPECIES	271	iba57 (ENSHBUG00000008688)	jmjd4 (ENSHBUG00000008703)	snap47 (ENSHBUG00000008680)	wnt9a (ENSHBUG00000008674)	wnt3a (ENSHBUG00000008645)	ENSHBUG00000008630	zgc:63882 (ENSHBUG00000008610)	guk1a (ENSHBUG00000008574)	ENSHBUG00000008537	ENSHBUG00000008501	ENSHBUG00000008485	ENSHBUG00000008466	ENSHBUG00000008454	atg9b (ENSHBUG00000008427) #25	abcb8 (ENSHBUG00000008407) #24	cdk5 (ENSHBUG00000008311) #22	asic1c (ENSHBUG00000008202)	zgc:92591 (ENSHBUG00000008114)	asb10 (ENSHBUG00000008102) #16	gbx1 (ENSHBUG00000008078) #17	AGAP3 (ENSHBUG00000008070) #18	RB1CC1 (ENSHBUG00000008004)	pcmtd1 (ENSHBUG00000007906)	SNTG1 (ENSHBUG00000007864)	snai2 (ENSHBUG00000007764)	ube2v2 (ENSHBUG00000007723)	mcm4 (ENSHBUG00000007710)	cebpd (ENSHBUG00000007610)	SPIDR (ENSHBUG00000007628)	mapre2 (ENSHBUG00000007605)	dtna (ENSHBUG00000007557)
Lyretail cichlid	MODERN SPECIES	300	iba57 (ENSNBRG00000011107)	jmjd4 (ENSNBRG00000011113)	snap47 (ENSNBRG00000011135)	wnt9a (ENSNBRG00000011153)	wnt3a (ENSNBRG00000011176)	ENSNBRG00000011196	zgc:63882 (ENSNBRG00000011218)	guk1a (ENSNBRG00000011244)	ENSNBRG00000011266	ENSNBRG00000011273	ENSNBRG00000011285	ENSNBRG00000011300	ENSNBRG00000011318	atg9b (ENSNBRG00000011390) #25	abcb8 (ENSNBRG00000011417) #24	cdk5 (ENSNBRG00000011455) #22	ENSNBRG00000011500	ENSNBRG00000011534	ENSNBRG00000011549	zgc:92591 (ENSNBRG00000011561)	asb10 (ENSNBRG00000011582) #16	gbx1 (ENSNBRG00000011598) #17	AGAP3 (ENSNBRG00000011615) #18	RB1CC1 (ENSNBRG00000011655)	ENSNBRG00000011714	pcmtd1 (ENSNBRG00000011723)	SNTG1 (ENSNBRG00000011748)	snai2 (ENSNBRG00000011785)	ube2v2 (ENSNBRG00000011801)	mcm4 (ENSNBRG00000011812)	cebpd (ENSNBRG00000011847)
Nile tilapia	MODERN SPECIES	9	CYP8B1 (ENSONIG00000031016)	CYP8B1 (ENSONIG00000039038)	gjc2 (ENSONIG00000009477)	iba57 (ENSONIG00000009479)	jmjd4 (ENSONIG00000032108)	snap47 (ENSONIG00000009481)	wnt9a (ENSONIG00000042511)	wnt3a (ENSONIG00000033810)	ENSONIG00000009484	zgc:63882 (ENSONIG00000009485)	guk1a (ENSONIG00000009487)	ENSONIG00000039684	atg9b (ENSONIG00000009497) #25	ENSONIG00000029280	abcb8 (ENSONIG00000009500) #24	cdk5 (ENSONIG00000009501) #22	ENSONIG00000043060	asic1c (ENSONIG00000009504)	zgc:92591 (ENSONIG00000009515)	asb10 (ENSONIG00000009516) #16	gbx1 (ENSONIG00000009520) #17	AGAP3 (ENSONIG00000009522) #18	RB1CC1 (ENSONIG00000009527)	ENSONIG00000009529	pcmtd1 (ENSONIG00000027759)	SNTG1 (ENSONIG00000009535)	snai2 (ENSONIG00000009542)	ENSONIG00000036504	ube2v2 (ENSONIG00000037520)	mcm4 (ENSONIG00000009547)	cebpd (ENSONIG00000021429)
Midas cichlid	MODERN SPECIES	117	iba57 (ENSACIG00000019103)	jmjd4 (ENSACIG00000019092)	snap47 (ENSACIG00000019077)	wnt9a (ENSACIG00000019067)	wnt3a (ENSACIG00000019061)	ENSACIG00000019050	zgc:63882 (ENSACIG00000019038)	guk1a (ENSACIG00000019030)	ENSACIG00000019011	ENSACIG00000019000	ENSACIG00000018973	ENSACIG00000018960	ENSACIG00000018941	ENSACIG00000018934	abcb8 (ENSACIG00000018908) #24	cdk5 (ENSACIG00000018892) #22	ENSACIG00000018879	ENSACIG00000018864	ENSACIG00000018855	zgc:92591 (ENSACIG00000018847)	asb10 (ENSACIG00000018828) #16	gbx1 (ENSACIG00000018821) #17	AGAP3 (ENSACIG00000018801) #18	RB1CC1 (ENSACIG00000018763)	ST18 (ENSACIG00000018723)	pcmtd1 (ENSACIG00000018704)	SNTG1 (ENSACIG00000018689)	snai2 (ENSACIG00000018641)	dpy30 (ENSACIG00000018634)	psen2 (ENSACIG00000018610)	ENSACIG00000018593
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.v	ENSGT00940000168428.b.a	ENSGT00940000177473	ENSGT00940000154756.B.u.a	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032
Oryzias	ANCESTRAL SPECIES	12	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.v	ENSGT00940000168428.b.b.a	ENSGT00940000177473	ENSGT00940000154756.B.u.a	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.v	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A	ENSGT00390000014839.a.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
Indian medaka	DUPLICATION
Indian medaka	MODERN SPECIES	10	gjc2 (ENSOMEG00000007766)	iba57 (ENSOMEG00000007759)	jmjd4 (ENSOMEG00000007735)	snap47 (ENSOMEG00000007681)	wnt9a (ENSOMEG00000007660)	wnt3a (ENSOMEG00000007627)	ENSOMEG00000007598	guk1a (ENSOMEG00000007565)	ENSOMEG00000007519	ENSOMEG00000007491	ENSOMEG00000007479	ENSOMEG00000007470	ENSOMEG00000007455	atg9b (ENSOMEG00000007421) #25	ENSOMEG00000000177 #24	cdk5 (ENSOMEG00000007307) #22	asic1c (ENSOMEG00000007204)	asb10 (ENSOMEG00000007076) #16	gbx1 (ENSOMEG00000007015) #17	AGAP3 (ENSOMEG00000006957) #18	RB1CC1 (ENSOMEG00000006857)	ENSOMEG00000000159	pcmtd1 (ENSOMEG00000006710)	SNTG1 (ENSOMEG00000006675)	snai2 (ENSOMEG00000006591)	ube2v2 (ENSOMEG00000006578)	mcm4 (ENSOMEG00000006568)	SPIDR (ENSOMEG00000000152)	cebpd (ENSOMEG00000006472)	mapre2 (ENSOMEG00000006446)	dtna (ENSOMEG00000006419)
Indian medaka	MODERN SPECIES	317																ENSOMEG00000016529 #22	ENSOMEG00000016536	fgf12a (ENSOMEG00000016587)	parla (ENSOMEG00000016625)	extl2 (ENSOMEG00000016658)	zgc:110366 (ENSOMEG00000016691)	RC3H1 (ENSOMEG00000016784)	ENSOMEG00000016822	tal1 (ENSOMEG00000016840)	ppm1la (ENSOMEG00000016870)	arl14 (ENSOMEG00000016904)	ENSOMEG00000016917	zp3b (ENSOMEG00000016945)	ENSOMEG00000016972	zgc:153615 (ENSOMEG00000016996)	selenot1a (ENSOMEG00000017008)
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00940000177473	ENSGT00940000154756.B.u.a	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b	ENSGT00940000153897.a
Japanese Medaka HdrR	MODERN SPECIES	8	wnt9a (ENSORLG00000017600)	wnt3a (ENSORLG00000017597)	ENSORLG00000017594	zgc:63882 (ENSORLG00000017592)	guk1a (ENSORLG00000017581)	ENSORLG00000025989	ENSORLG00000028027	ENSORLG00000024770	ENSORLG00000026200	ENSORLG00000029183	ENSORLG00000030589	ENSORLG00000028404	ENSORLG00000022942	atg9b (ENSORLG00000017550) #25	abcb8 (ENSORLG00000017547) #24	cdk5 (ENSORLG00000017539) #22	asic1c (ENSORLG00000017530)	asb10 (ENSORLG00000017524) #16	gbx1 (ENSORLG00000017521) #17	AGAP3 (ENSORLG00000017516) #18	RB1CC1 (ENSORLG00000017508)	ENSORLG00000017500	pcmtd1 (ENSORLG00000017490)	SNTG1 (ENSORLG00000017486)	snai2 (ENSORLG00000017475)	ube2v2 (ENSORLG00000026484)	mcm4 (ENSORLG00000017467)	cebpd (ENSORLG00000022254)	SPIDR (ENSORLG00000017445)	mapre2 (ENSORLG00000017442)	dtna (ENSORLG00000017435)
Chinese medaka	MODERN SPECIES	770	HIGD1A (ENSOSIG00000015244)	cyp8b1.2 (ENSOSIG00000015245)	gjc2 (ENSOSIG00000015247)	iba57 (ENSOSIG00000015248)	jmjd4 (ENSOSIG00000015249)	snap47 (ENSOSIG00000015251)	wnt9a (ENSOSIG00000015254)	wnt3a (ENSOSIG00000015255)	ENSOSIG00000015298	zgc:63882 (ENSOSIG00000015300)	guk1a (ENSOSIG00000015302)	ENSOSIG00000015306	ENSOSIG00000015309	atg9b (ENSOSIG00000015312) #25	abcb8 (ENSOSIG00000015397) #24	cdk5 (ENSOSIG00000015647) #22	asic1c (ENSOSIG00000015648)	asb10 (ENSOSIG00000015654) #16	gbx1 (ENSOSIG00000015657) #17	AGAP3 (ENSOSIG00000015672) #18	RB1CC1 (ENSOSIG00000015917)	ENSOSIG00000015922	pcmtd1 (ENSOSIG00000015923)	SNTG1 (ENSOSIG00000015925)	snai2 (ENSOSIG00000015927)	ube2v2 (ENSOSIG00000015928)	mcm4 (ENSOSIG00000015948)	cebpd (ENSOSIG00000016781)	SPIDR (ENSOSIG00000016783)	mapre2 (ENSOSIG00000016787)	dtna (ENSOSIG00000016833)
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.u.b	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Aplocheiloidei	ANCESTRAL SPECIES	11	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.u.b	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Mangrove rivulus	MODERN SPECIES	88	gjc2 (ENSKMAG00000004197)	iba57 (ENSKMAG00000004213)	jmjd4 (ENSKMAG00000004220)	snap47 (ENSKMAG00000004252)	wnt9a (ENSKMAG00000004277)	wnt3a (ENSKMAG00000004304)	ENSKMAG00000004334	zgc:63882 (ENSKMAG00000004347)	guk1a (ENSKMAG00000004364)	ENSKMAG00000004392	ENSKMAG00000004409	ENSKMAG00000004430	ENSKMAG00000004461	atg9b (ENSKMAG00000004505) #25	abcb8 (ENSKMAG00000004537) #24	cdk5 (ENSKMAG00000004590) #22	asic1c (ENSKMAG00000004633)	zgc:92591 (ENSKMAG00000004698)	asb10 (ENSKMAG00000004706) #16	gbx1 (ENSKMAG00000004719) #17	AGAP3 (ENSKMAG00000004760) #18	RB1CC1 (ENSKMAG00000004862)	ST18 (ENSKMAG00000004969)	pcmtd1 (ENSKMAG00000005024)	SNTG1 (ENSKMAG00000005086)	snai2 (ENSKMAG00000005164)	ube2v2 (ENSKMAG00000005178)	mcm4 (ENSKMAG00000005201)	cebpd (ENSKMAG00000005255)	SPIDR (ENSKMAG00000005268)	mapre2 (ENSKMAG00000005341)
Turquoise killifish	MODERN SPECIES	1618	CCDC13 (ENSNFUG00015011602)	HIGD1A (ENSNFUG00015011627)	ENSNFUG00015011637	cyp8b1.2 (ENSNFUG00015011644)	CX47.1 (ENSNFUG00015011652)	IBA57 (ENSNFUG00015011660)	JMJD4 (ENSNFUG00015011664)	snap47 (ENSNFUG00015011673)	wnt9a (ENSNFUG00015011683)	wnt3a (ENSNFUG00015011740)	ENSNFUG00015011792	C2H1ORF35 (ENSNFUG00015011822)	GUK1 (ENSNFUG00015011837)	ATG9B (ENSNFUG00015012089) #25	abcb8 (ENSNFUG00015012139) #24	cdk5 (ENSNFUG00015012468) #22	asic1c (ENSNFUG00015012539)	ENSNFUG00015012546	zgc:92591 (ENSNFUG00015012548)	asb10 (ENSNFUG00015012552) #16	GBX1 (ENSNFUG00015012554) #17	AGAP3 (ENSNFUG00015012655) #18	ENSNFUG00015016065	RB1CC1 (ENSNFUG00015016079)	ST18 (ENSNFUG00015016175)	PCMTD1 (ENSNFUG00015016259)	SNTG1 (ENSNFUG00015016268)	SNAI2 (ENSNFUG00015016302)	ENSNFUG00015016310	ube2v2 (ENSNFUG00015016312)	MCM4 (ENSNFUG00015016361)
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a.f	ENSGT00950000183080.a.b.b.a.a.e	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b.t.a	ENSGT00950000182846.a.a.b.a.a.f	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a.f	ENSGT00950000183080.a.b.b.a.a.e	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
Poecilia	ANCESTRAL SPECIES	16	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a.f	ENSGT00950000183080.a.b.b.a.a.e	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
NAME_6	ANCESTRAL SPECIES	11	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a.f	ENSGT00950000183080.a.b.b.a.a.e	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
Amazon molly	MODERN SPECIES	279	ENSPFOG00000012324	ENSPFOG00000022784	gjc2 (ENSPFOG00000020360)	iba57 (ENSPFOG00000012415)	jmjd4 (ENSPFOG00000012431)	snap47 (ENSPFOG00000012485)	wnt9a (ENSPFOG00000012510)	wnt3a (ENSPFOG00000012574)	ENSPFOG00000022917	ENSPFOG00000012632	zgc:63882 (ENSPFOG00000012658)	guk1a (ENSPFOG00000012680)	ENSPFOG00000012723	atg9b (ENSPFOG00000013009) #25	abcb8 (ENSPFOG00000013125) #24	cdk5 (ENSPFOG00000013234) #22	asic1c (ENSPFOG00000013248)	zgc:92591 (ENSPFOG00000013426)	asb10 (ENSPFOG00000013428) #16	gbx1 (ENSPFOG00000013479) #17	AGAP3 (ENSPFOG00000013509) #18	RB1CC1 (ENSPFOG00000013941)	ST18 (ENSPFOG00000014046)	pcmtd1 (ENSPFOG00000014144)	SNTG1 (ENSPFOG00000014188)	snai2 (ENSPFOG00000014336)	ube2v2 (ENSPFOG00000014363)	mcm4 (ENSPFOG00000014379)	ENSPFOG00000014442	cebpd (ENSPFOG00000020361)	mapre2 (ENSPFOG00000014482)
Sailfin molly	MODERN SPECIES	1609														atg9b (ENSPLAG00000016759) #25	abcb8 (ENSPLAG00000016699) #24	cdk5 (ENSPLAG00000016146) #22	asic1c (ENSPLAG00000016089)	ENSPLAG00000016067
Guppy	MODERN SPECIES	447	iba57 (ENSPREG00000007620)	jmjd4 (ENSPREG00000007633)	snap47 (ENSPREG00000007648)	wnt9a (ENSPREG00000007669)	wnt3a (ENSPREG00000007694)	ENSPREG00000007723	zgc:63882 (ENSPREG00000007758)	guk1a (ENSPREG00000007797)	ENSPREG00000007829	ENSPREG00000007865	ENSPREG00000007891	ENSPREG00000007908	ENSPREG00000007930	atg9b (ENSPREG00000007948) #25	abcb8 (ENSPREG00000007968) #24	cdk5 (ENSPREG00000008002) #22	asic1c (ENSPREG00000008045)	zgc:92591 (ENSPREG00000008106)	asb10 (ENSPREG00000008118) #16	gbx1 (ENSPREG00000008139) #17	AGAP3 (ENSPREG00000008165) #18	RB1CC1 (ENSPREG00000008267)	ST18 (ENSPREG00000008337)	pcmtd1 (ENSPREG00000008452)	SNTG1 (ENSPREG00000008482)	SNAI2 (ENSPREG00000008528)	ube2v2 (ENSPREG00000008536)	mcm4 (ENSPREG00000008561)	cebpd (ENSPREG00000008610)	SPIDR (ENSPREG00000008640)	mapre2 (ENSPREG00000008676)
Platyfish	MODERN SPECIES	20	jmjd4 (ENSXMAG00000028952)	snap47 (ENSXMAG00000005805)	wnt9a (ENSXMAG00000005793)	wnt3a (ENSXMAG00000005789)	ENSXMAG00000005788	zgc:63882 (ENSXMAG00000005776)	guk1a (ENSXMAG00000027618)	ENSXMAG00000026855	ENSXMAG00000029214	ENSXMAG00000023267	ENSXMAG00000027041	ENSXMAG00000024038	ENSXMAG00000021592	atg9b (ENSXMAG00000005722) #25	abcb8 (ENSXMAG00000006347) #24	cdk5 (ENSXMAG00000018810) #22	ENSXMAG00000010416	zgc:92591 (ENSXMAG00000018881)	asb10 (ENSXMAG00000018883) #16	gbx1 (ENSXMAG00000027732) #17	AGAP3 (ENSXMAG00000018898) #18	RB1CC1 (ENSXMAG00000018959)	ST18 (ENSXMAG00000018975)	pcmtd1 (ENSXMAG00000029433)	SNTG1 (ENSXMAG00000019006)	snai2 (ENSXMAG00000019030)	ube2v2 (ENSXMAG00000019038)	mcm4 (ENSXMAG00000019042)	cebpd (ENSXMAG00000019437)	SPIDR (ENSXMAG00000019057)	mapre2 (ENSXMAG00000019068)
NAME_4	ANCESTRAL SPECIES	19	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a.f	ENSGT00950000183080.a.b.b.a.a.e	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Mummichog	MODERN SPECIES	314	iba57 (ENSFHEG00000011625)	jmjd4 (ENSFHEG00000011607)	snap47 (ENSFHEG00000011639)	wnt9a (ENSFHEG00000011658)	wnt3a (ENSFHEG00000011672)	ENSFHEG00000011714	zgc:63882 (ENSFHEG00000011733)	guk1a (ENSFHEG00000011764)	ENSFHEG00000011803	ENSFHEG00000011846	ENSFHEG00000011884	ENSFHEG00000011900	ENSFHEG00000000698	atg9b (ENSFHEG00000011940) #25	abcb8 (ENSFHEG00000011986) #24	cdk5 (ENSFHEG00000012060) #22	asic1c (ENSFHEG00000012088)	ENSFHEG00000012108	zgc:92591 (ENSFHEG00000012118)	gbx1 (ENSFHEG00000012128) #17	asb10 (ENSFHEG00000012165) #16	ENSFHEG00000012330 #18	RB1CC1 (ENSFHEG00000012463)	ENSFHEG00000012480	ENSFHEG00000012494	pcmtd1 (ENSFHEG00000012507)	SNTG1 (ENSFHEG00000012554)	snai2 (ENSFHEG00000012561)	ube2v2 (ENSFHEG00000012580)	mcm4 (ENSFHEG00000012690)	cebpd (ENSFHEG00000012767)
Sheepshead minnow	DUPLICATION
Sheepshead minnow	DUPLICATION
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	512								cdk1 (ENSCVAG00000021312)	CTU2 (ENSCVAG00000021371)	RNF166 (ENSCVAG00000021397)	ENSCVAG00000021448	ENSCVAG00000021459	zgc:162944 (ENSCVAG00000021484)	acod1 (ENSCVAG00000021516)	kctd12.1 (ENSCVAG00000000548)	ENSCVAG00000021570 #22	lmo7a (ENSCVAG00000021943)	uchl3 (ENSCVAG00000022234)	COMMD6 (ENSCVAG00000022293)	TBC1D4 (ENSCVAG00000022599)	klf12b (ENSCVAG00000022719)	KLF5 (ENSCVAG00000022764)	dachd (ENSCVAG00000001631)	GPR18 (ENSCVAG00000001636)	gpr183a (ENSCVAG00000001638)	si:ch211-184m13.4 (ENSCVAG00000001642)
Sheepshead minnow	MODERN SPECIES	688											dhrs12 (ENSCVAG00000021792)	wdfy2 (ENSCVAG00000021846)	ints6 (ENSCVAG00000000560)	serpine3 (ENSCVAG00000021974)	FAM124A (ENSCVAG00000021985)	ENSCVAG00000022003 #22	tsn (ENSCVAG00000022024)	si:dkey-91i10.2 (ENSCVAG00000022033)	eaf2 (ENSCVAG00000022059)	cyp27a3 (ENSCVAG00000022102)	slc15a2 (ENSCVAG00000000568)	hspbap1 (ENSCVAG00000000731)	slc49a4 (ENSCVAG00000022140)
Sheepshead minnow	MODERN SPECIES	1122													ENSCVAG00000007092	ENSCVAG00000007101	shda (ENSCVAG00000007115)	ENSCVAG00000007132 #22	ENSCVAG00000007147	ENSCVAG00000007167	PLPP2 (ENSCVAG00000007175)	ENSCVAG00000007218	gna11b (ENSCVAG00000007254)	ENSCVAG00000007260	tpgs1 (ENSCVAG00000007266)	ISYNA1 (ENSCVAG00000007304)	pdcd10a (ENSCVAG00000007335)
Sheepshead minnow	MODERN SPECIES	1080						ENSCVAG00000018314	zgc:63882 (ENSCVAG00000018338)	guk1a (ENSCVAG00000018403)	ENSCVAG00000018458	ENSCVAG00000018473	ENSCVAG00000018479	ENSCVAG00000018495	ENSCVAG00000000485	atg9b (ENSCVAG00000018540) #25	abcb8 (ENSCVAG00000018587) #24	cdk5 (ENSCVAG00000018643) #22	asic1c (ENSCVAG00000018849)	ENSCVAG00000018865
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00940000177117	ENSGT00940000168428.b.a	ENSGT00940000154756.B.v	ENSGT00940000177473	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032
Eupercaria	ANCESTRAL SPECIES	24	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.v	ENSGT00940000177117	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Tetraodontidae	ANCESTRAL SPECIES	30	ENSGT00940000164845	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
Fugu	MODERN SPECIES	14	higd1a (ENSTRUG00000013991)	CYP8B1 (ENSTRUG00000024163)	CYP8B1 (ENSTRUG00000029022)	CYP8B1 (ENSTRUG00000030959)	gjc2 (ENSTRUG00000014012)	iba57 (ENSTRUG00000021920)	jmjd4 (ENSTRUG00000022722)	snap47 (ENSTRUG00000014070)	wnt9a (ENSTRUG00000014101)	wnt3a (ENSTRUG00000014272)	arf2b (ENSTRUG00000014380)	zgc:63882 (ENSTRUG00000014402)	guk1 (ENSTRUG00000014441)	atg9b (ENSTRUG00000002303) #25	abcb8 (ENSTRUG00000003209) #24	cdk5 (ENSTRUG00000004034) #22	asic1c (ENSTRUG00000004514)	zgc:92591 (ENSTRUG00000020180)	asb10 (ENSTRUG00000005244) #16	gbx1 (ENSTRUG00000005470) #17	AGAP3 (ENSTRUG00000005543) #18	RB1CC1 (ENSTRUG00000005744)	ST18 (ENSTRUG00000006078)	pcmtd1 (ENSTRUG00000023062)	SNTG1 (ENSTRUG00000006540)	snai2 (ENSTRUG00000025588)	ube2v2 (ENSTRUG00000006972)	mcm4 (ENSTRUG00000006983)	cebpd (ENSTRUG00000007551)	SPIDR (ENSTRUG00000007627)	mapre2 (ENSTRUG00000026616)
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.v	ENSGT00940000177117	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Ballan wrasse	MODERN SPECIES	336				wnt3a (ENSLBEG00000002020)	arf1 (ENSLBEG00000001998)	zgc:63882 (ENSLBEG00000001982)	guk1a (ENSLBEG00000001931)	ENSLBEG00000001872	ENSLBEG00000001837	ENSLBEG00000001816	ENSLBEG00000001714	ENSLBEG00000001687	ENSLBEG00000001649	ENSLBEG00000001624 #25	abcb8 (ENSLBEG00000001537) #24	cdk5 (ENSLBEG00000001455) #22	ENSLBEG00000001420	ENSLBEG00000001405	zgc:92591 (ENSLBEG00000001382)	asb10 (ENSLBEG00000001325) #16	gbx1 (ENSLBEG00000001309) #17	AGAP3 (ENSLBEG00000001302) #18	RB1CC1 (ENSLBEG00000001203)	ST18 (ENSLBEG00000001117)	pcmtd1 (ENSLBEG00000001073)	SNTG1 (ENSLBEG00000000987)	snai2 (ENSLBEG00000000972)	ube2v2 (ENSLBEG00000000946)
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.v	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154511.b	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154511.b	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
European seabass	MODERN SPECIES		myl13 (ENSDLAG00005003140)	tmie (ENSDLAG00005002754)	ENSDLAG00005002661	ENSDLAG00005030746	pth1r (ENSDLAG00005028827)	jmjd4 (ENSDLAG00005026039)	snap47 (ENSDLAG00005026038)	wnt9a (ENSDLAG00005026035)	wnt3a (ENSDLAG00005026033)	ENSDLAG00005033446	C1orf35 (ENSDLAG00005030355)	GUK1 (ENSDLAG00005026026)	ENSDLAG00005026018	atg9b (ENSDLAG00005026009) #25	ENSDLAG00005025991 #24	cdk5 (ENSDLAG00005025973) #22	asic1c (ENSDLAG00005025961)	zgc:92591 (ENSDLAG00005021322)	asb10 (ENSDLAG00005025956) #16	gbx1 (ENSDLAG00005026693) #17	AGAP3 (ENSDLAG00005025915) #18	RB1CC1 (ENSDLAG00005025897)	ST18 (ENSDLAG00005025891)	pcmtd1 (ENSDLAG00005025888)	SNTG1 (ENSDLAG00005025887)	SNAI2 (ENSDLAG00005025886)	ube2v2 (ENSDLAG00005025878)	cebpd (ENSDLAG00005025803)	mcm4 (ENSDLAG00005025799)	mapre2 (ENSDLAG00005025797)	dtna (ENSDLAG00005025785)
Large yellow croaker	MODERN SPECIES	1	tmie (ENSLCRG00005019482)	ENSLCRG00005019484	HIGD1A (ENSLCRG00005019487)	CYP8B1 (ENSLCRG00005019488)	gjc2 (ENSLCRG00005019490)	iba57 (ENSLCRG00005019491)	jmjd4 (ENSLCRG00005019492)	snap47 (ENSLCRG00005019493)	wnt9a (ENSLCRG00005019494)	wnt3a (ENSLCRG00005019495)	ENSLCRG00005019500	zgc:63882 (ENSLCRG00005019501)	guk1a (ENSLCRG00005019504)	atg9b (ENSLCRG00005019515) #25	abcb8 (ENSLCRG00005019519) #24	cdk5 (ENSLCRG00005019567) #22	asic1c (ENSLCRG00005019590)	zgc:92591 (ENSLCRG00005019609)	asb10 (ENSLCRG00005000087) #16	gbx1 (ENSLCRG00005000099) #17	AGAP3 (ENSLCRG00005000222) #18	RB1CC1 (ENSLCRG00005000402)	pcmtd1 (ENSLCRG00005000459)	SNTG1 (ENSLCRG00005000463)	SNAI2 (ENSLCRG00005000465)	ube2v2 (ENSLCRG00005000466)	mcm4 (ENSLCRG00005000475)	cebpd (ENSLCRG00005000530)	SPIDR (ENSLCRG00005000533)	mapre2 (ENSLCRG00005000534)	dtna (ENSLCRG00005000536)
Gilthead seabream	DUPLICATION
Gilthead seabream	MODERN SPECIES	36																ENSSAUG00010005204 #22	ENSSAUG00010005206	ENSSAUG00010005212	ENSSAUG00010005243	ENSSAUG00010005245	ENSSAUG00010005246	ENSSAUG00010005250
Gilthead seabream	MODERN SPECIES	13	tmie (ENSSAUG00010023529)	ENSSAUG00010023531	HIGD1A (ENSSAUG00010023533)	cyp8b1.2 (ENSSAUG00010023534)	gjc2 (ENSSAUG00010023535)	iba57 (ENSSAUG00010023536)	jmjd4 (ENSSAUG00010002799)	snap47 (ENSSAUG00010002815)	wnt9a (ENSSAUG00010002844)	wnt3a (ENSSAUG00010002897)	guk1a (ENSSAUG00010002929)	zgc:63882 (ENSSAUG00010002941)	ENSSAUG00010002946	atg9b (ENSSAUG00010002962) #25	abcb8 (ENSSAUG00010002978) #24	cdk5 (ENSSAUG00010003127) #22	asic1c (ENSSAUG00010003193)	zgc:92591 (ENSSAUG00010003641)	asb10 (ENSSAUG00010003644) #16	gbx1 (ENSSAUG00010003647) #17	AGAP3 (ENSSAUG00010003720) #18	RB1CC1 (ENSSAUG00010006685)	ENSSAUG00010006749	pcmtd1 (ENSSAUG00010006752)	SNTG1 (ENSSAUG00010006754)	snai2 (ENSSAUG00010006755)	ube2v2 (ENSSAUG00010006759)	mcm4 (ENSSAUG00010006897)	cebpd (ENSSAUG00010007393)	SPIDR (ENSSAUG00010007395)	mapre2 (ENSSAUG00010007398)
Perciformes	ANCESTRAL SPECIES	5	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.v	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Perciformes_a	ANCESTRAL SPECIES	17	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Pike perch	MODERN SPECIES	12	ENSSLUG00000018846	CYP8B1 (ENSSLUG00000018852)	gjc2 (ENSSLUG00000018864)	iba57 (ENSSLUG00000018866)	jmjd4 (ENSSLUG00000018868)	snap47 (ENSSLUG00000018881)	wnt9a (ENSSLUG00000018906)	wnt3a (ENSSLUG00000018926)	ENSSLUG00000018944	zgc:63882 (ENSSLUG00000018953)	guk1a (ENSSLUG00000018960)	ENSSLUG00000018971	ENSSLUG00000018980	atg9b (ENSSLUG00000018999) #25	abcb8 (ENSSLUG00000019021) #24	cdk5 (ENSSLUG00000000174) #22	asic1c (ENSSLUG00000000195)	zgc:92591 (ENSSLUG00000000212)	asb10 (ENSSLUG00000000218) #16	gbx1 (ENSSLUG00000000221) #17	AGAP3 (ENSSLUG00000000399) #18	RB1CC1 (ENSSLUG00000000803)	ENSSLUG00000000830	ENSSLUG00000000831	pcmtd1 (ENSSLUG00000000835)	SNTG1 (ENSSLUG00000000840)	snai2 (ENSSLUG00000000846)	ube2v2 (ENSSLUG00000000853)	mcm4 (ENSSLUG00000000910)	cebpd (ENSSLUG00000000993)	SPIDR (ENSSLUG00000000997)
Channel bull blenny	MODERN SPECIES	8	ENSCGOG00000001939	HIGD1A (ENSCGOG00000001945)	cyp8b1.2 (ENSCGOG00000001953)	gjc2 (ENSCGOG00000001961)	jmjd4 (ENSCGOG00000001963)	iba57 (ENSCGOG00000001966)	snap47 (ENSCGOG00000001968)	wnt9a (ENSCGOG00000001970)	wnt3a (ENSCGOG00000001974)	ENSCGOG00000001978	zgc:63882 (ENSCGOG00000002002)	guk1a (ENSCGOG00000002003)	ENSCGOG00000002005	atg9b (ENSCGOG00000002008) #25	abcb8 (ENSCGOG00000002017) #24	cdk5 (ENSCGOG00000002062) #22	asic1c (ENSCGOG00000002255)	zgc:92591 (ENSCGOG00000002261)	asb10 (ENSCGOG00000002262) #16	ENSCGOG00000002263	gbx1 (ENSCGOG00000002264) #17	AGAP3 (ENSCGOG00000002284) #18	RB1CC1 (ENSCGOG00000003090)	ST18 (ENSCGOG00000003832)	pcmtd1 (ENSCGOG00000003837)	SNTG1 (ENSCGOG00000003844)	snai2 (ENSCGOG00000003944)	ube2v2 (ENSCGOG00000003950)	mcm4 (ENSCGOG00000004032)	cebpd (ENSCGOG00000005203)	SPIDR (ENSCGOG00000005207)
Cottioidei	ANCESTRAL SPECIES	22	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B.v	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
Stickleback	MODERN SPECIES	2				ENSGACG00000018008	ZNF622 (ENSGACG00000018006)	ENSGACG00000018003	ENSGACG00000018000	rnf182 (ENSGACG00000017999)	ENSGACG00000017997	ranbp9 (ENSGACG00000017991)	ENSGACG00000017989	epdr1 (ENSGACG00000017987)	stard3nl (ENSGACG00000017984)	atg9b (ENSGACG00000017983) #25	abcb8 (ENSGACG00000017977) #24	cdk5 (ENSGACG00000017975) #22	asic1c (ENSGACG00000017974)	ENSGACG00000017967	ENSGACG00000017965	zgc:92591 (ENSGACG00000017964)	asb10 (ENSGACG00000017961) #16	gbx1 (ENSGACG00000017959) #17	AGAP3 (ENSGACG00000017957) #18	AGAP3 (ENSGACG00000017955) #18	RB1CC1 (ENSGACG00000017953)	ENSGACG00000017947	pcmtd1 (ENSGACG00000017945)	SNTG1 (ENSGACG00000017936)	snai2 (ENSGACG00000017935)	ube2v2 (ENSGACG00000017931)	mcm4 (ENSGACG00000017929)
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00940000177117	ENSGT00940000154756.B.v	ENSGT00940000177473	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032
Carangaria	ANCESTRAL SPECIES	5	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Turbot	MODERN SPECIES	19	ENSSMAG00000018685	ENSSMAG00000018710	cyp8b1.1 (ENSSMAG00000024609)	ENSSMAG00000018725	iba57 (ENSSMAG00000018740)	jmjd4 (ENSSMAG00000018731)	snap47 (ENSSMAG00000018755)	wnt9a (ENSSMAG00000018760)	wnt3a (ENSSMAG00000018775)	ENSSMAG00000018796	zgc:63882 (ENSSMAG00000018814)	GUK1 (ENSSMAG00000018836)	ENSSMAG00000018861	atg9b (ENSSMAG00000018960) #25	ENSSMAG00000018981 #24	cdk5 (ENSSMAG00000019009) #22	asic1c (ENSSMAG00000019049)	ENSSMAG00000025562	zgc:92591 (ENSSMAG00000019080)	asb10 (ENSSMAG00000019166) #16	gbx1 (ENSSMAG00000019176) #17	AGAP3 (ENSSMAG00000019184) #18	RB1CC1 (ENSSMAG00000019193)	ENSSMAG00000019253	pcmtd1 (ENSSMAG00000019275)	ENSSMAG00000023249	SNTG1 (ENSSMAG00000019294)	snai2 (ENSSMAG00000019364)	ENSSMAG00000019379	ube2v2 (ENSSMAG00000024137)	mcm4 (ENSSMAG00000019411)
Tongue sole	MODERN SPECIES	12	ss18 (ENSCSEG00000011353)	psma8 (ENSCSEG00000011339)	KCTD1 (ENSCSEG00000011319)	AQP4 (ENSCSEG00000011309)	CDH2 (ENSCSEG00000011290)	dsc2l (ENSCSEG00000011279)	ENSCSEG00000011262	ENSCSEG00000011248	ENSCSEG00000011234	ENSCSEG00000011222	ENSCSEG00000011215	ENSCSEG00000011207	ENSCSEG00000011191	atg9b (ENSCSEG00000011173) #25	abcb8 (ENSCSEG00000011141) #24	cdk5 (ENSCSEG00000011124) #22	asic1c (ENSCSEG00000011093)	zgc:92591 (ENSCSEG00000011088)	asb10 (ENSCSEG00000011081) #16	gbx1 (ENSCSEG00000011077) #17	AGAP3 (ENSCSEG00000011034) #18	RB1CC1 (ENSCSEG00000010957)	ST18 (ENSCSEG00000010940)	pcmtd1 (ENSCSEG00000010930)	GPAA1 (ENSCSEG00000010913)	exosc4 (ENSCSEG00000010906)	ENSCSEG00000010891	ENSCSEG00000010883	ENSCSEG00000010783	ENSCSEG00000010760	ZNF830 (ENSCSEG00000010754)
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b	ENSGT01030000234528.B.b.a.a.a.c.a	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A
Barramundi perch	MODERN SPECIES	69	HIGD1A (ENSLCAG00010004378)	CYP8B1 (ENSLCAG00010004385)	gjc2 (ENSLCAG00010004391)	jmjd4 (ENSLCAG00010004400)	iba57 (ENSLCAG00010004408)	snap47 (ENSLCAG00010004413)	wnt9a (ENSLCAG00010004419)	wnt3a (ENSLCAG00010004433)	guk1a (ENSLCAG00010004457)	ENSLCAG00010004471	zgc:63882 (ENSLCAG00010004493)	ENSLCAG00010004502	ENSLCAG00010004515	atg9b (ENSLCAG00010004522) #25	abcb8 (ENSLCAG00010004603) #24	cdk5 (ENSLCAG00010004830) #22	ENSLCAG00010004858	ENSLCAG00010004878	zgc:92591 (ENSLCAG00010004894)	asb10 (ENSLCAG00010004897) #16	gbx1 (ENSLCAG00010004902) #17	AGAP3 (ENSLCAG00010004970) #18	ENSLCAG00010005091	RB1CC1 (ENSLCAG00010005128)	ST18 (ENSLCAG00010005184)	pcmtd1 (ENSLCAG00010005197)	SNTG1 (ENSLCAG00010005205)	snai2 (ENSLCAG00010005214)	ube2v2 (ENSLCAG00010005223)	mcm4 (ENSLCAG00010005262)	cebpd (ENSLCAG00010005325)
Seriola	ANCESTRAL SPECIES		ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00940000177117	ENSGT00940000154756.B.v	ENSGT00940000168428.b.b.a	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654
Greater amberjack	MODERN SPECIES	99	snap47 (ENSSDUG00000017216)	wnt9a (ENSSDUG00000017231)	wnt3a (ENSSDUG00000017246)	ENSSDUG00000017254	zgc:63882 (ENSSDUG00000017274)	guk1a (ENSSDUG00000017302)	ENSSDUG00000017345	ENSSDUG00000017370	ENSSDUG00000017384	ENSSDUG00000017391	ENSSDUG00000017412	ENSSDUG00000017420	ENSSDUG00000017429	ENSSDUG00000017448	abcb8 (ENSSDUG00000017474) #24	cdk5 (ENSSDUG00000017508) #22	asic1c (ENSSDUG00000017542)	ENSSDUG00000017561	zgc:92591 (ENSSDUG00000017571)	asb10 (ENSSDUG00000017671) #16	gbx1 (ENSSDUG00000017685) #17	AGAP3 (ENSSDUG00000017701) #18	RB1CC1 (ENSSDUG00000017754)	ST18 (ENSSDUG00000017880)	pcmtd1 (ENSSDUG00000017919)	SNTG1 (ENSSDUG00000017958)	snai2 (ENSSDUG00000018060)	ube2v2 (ENSSDUG00000018070)	mcm4 (ENSSDUG00000018088)	cebpd (ENSSDUG00000018137)	SPIDR (ENSSDUG00000018162)
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	2638	snap47 (ENSSLDG00000014027)	wnt9a (ENSSLDG00000014002)	wnt3a (ENSSLDG00000013961)	ENSSLDG00000013951	zgc:63882 (ENSSLDG00000013938)	guk1a (ENSSLDG00000013903)	ENSSLDG00000013874	ENSSLDG00000013851	ENSSLDG00000013840	ENSSLDG00000013825	ENSSLDG00000013810	ENSSLDG00000013785	ENSSLDG00000013764	atg9b (ENSSLDG00000013737) #25	abcb8 (ENSSLDG00000013646) #24	cdk5 (ENSSLDG00000013609) #22	asic1c (ENSSLDG00000013563)	zgc:92591 (ENSSLDG00000013535)	asb10 (ENSSLDG00000013521) #16	GBX1 (ENSSLDG00000013509) #17	AGAP3 (ENSSLDG00000013245) #18	RB1CC1 (ENSSLDG00000013089)	ST18 (ENSSLDG00000012990)	pcmtd1 (ENSSLDG00000012936)	SNTG1 (ENSSLDG00000012880)	snai2 (ENSSLDG00000012852)	ube2v2 (ENSSLDG00000012831)	mcm4 (ENSSLDG00000012781)	cebpd (ENSSLDG00000012735)	SPIDR (ENSSLDG00000012698)	mapre2 (ENSSLDG00000012676)
Yellowtail amberjack	MODERN SPECIES	261																ENSSLDG00000006151 #22
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT01030000238439	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032
Zig-zag eel	MODERN SPECIES	8	pth1r (ENSMAMG00000026542)	ENSMAMG00000016340	ENSMAMG00000016327	cyp8b1.1 (ENSMAMG00000016300)	ENSMAMG00000016289	iba57 (ENSMAMG00000016285)	jmjd4 (ENSMAMG00000016257)	snap47 (ENSMAMG00000016251)	wnt9a (ENSMAMG00000024682)	wnt3a (ENSMAMG00000025289)	ARF1 (ENSMAMG00000026228)	C1orf35 (ENSMAMG00000016191)	GUK1 (ENSMAMG00000016176)	atg9b (ENSMAMG00000016043) #25	ENSMAMG00000016011 #24	cdk5 (ENSMAMG00000016001) #22	ENSMAMG00000015979	ENSMAMG00000015966	ENSMAMG00000015963	zgc:92591 (ENSMAMG00000015956)	asb10 (ENSMAMG00000015919) #16	gbx1 (ENSMAMG00000015894) #17	AGAP3 (ENSMAMG00000015816) #18	RB1CC1 (ENSMAMG00000015728)	ENSMAMG00000026024	ENSMAMG00000015700	pcmtd1 (ENSMAMG00000015683)	SNTG1 (ENSMAMG00000015642)	snai2 (ENSMAMG00000015632)	ube2v2 (ENSMAMG00000015617)	mcm4 (ENSMAMG00000015571)
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
Climbing perch	MODERN SPECIES	8	ENSATEG00000005460	ENSATEG00000005470	cyp8b1.1 (ENSATEG00000005479)	ENSATEG00000025525	iba57 (ENSATEG00000025675)	jmjd4 (ENSATEG00000005536)	snap47 (ENSATEG00000030148)	wnt9a (ENSATEG00000005551)	wnt3a (ENSATEG00000005584)	ARF1 (ENSATEG00000001951)	C1orf35 (ENSATEG00000005635)	GUK1 (ENSATEG00000027879)	ENSATEG00000005687	atg9b (ENSATEG00000005911) #25	ENSATEG00000005929 #24	cdk5 (ENSATEG00000005993) #22	asic1c (ENSATEG00000006062)	zgc:92591 (ENSATEG00000006171)	asb10 (ENSATEG00000006447) #16	gbx1 (ENSATEG00000028764) #17	AGAP3 (ENSATEG00000006574) #18	RB1CC1 (ENSATEG00000006655)	ENSATEG00000029591	pcmtd1 (ENSATEG00000006834)	SNTG1 (ENSATEG00000006872)	snai2 (ENSATEG00000006892)	ube2v2 (ENSATEG00000006914)	mcm4 (ENSATEG00000006932)	cebpd (ENSATEG00000006996)	SPIDR (ENSATEG00000007043)	mapre2 (ENSATEG00000007058)
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	49							ENSBSLG00000018485	ENSBSLG00000018434	ENSBSLG00000018424	ENSBSLG00000018384	ENSBSLG00000018372	ENSBSLG00000018357	mcl1b (ENSBSLG00000018247)	ENSBSLG00000018171	ENSBSLG00000017909	ENSBSLG00000017857 #22	ENSBSLG00000017829	ENSBSLG00000017816	ENSBSLG00000017808	ENSBSLG00000017788	ENSBSLG00000017771	ENSBSLG00000017713	ENSBSLG00000017691	ENSBSLG00000017556
Siamese fighting fish	MODERN SPECIES	8	iba57 (ENSBSLG00000023623)	jmjd4 (ENSBSLG00000023617)	snap47 (ENSBSLG00000023611)	wnt9a (ENSBSLG00000023589)	wnt3a (ENSBSLG00000023563)	ENSBSLG00000023555	zgc:63882 (ENSBSLG00000023546)	guk1a (ENSBSLG00000023536)	ENSBSLG00000023512	ENSBSLG00000023505	ENSBSLG00000023479	atg9b (ENSBSLG00000023448) #25	abcb8 (ENSBSLG00000023174) #24	ENSBSLG00000023120	ENSBSLG00000023102	cdk5 (ENSBSLG00000023063) #22	asic1c (ENSBSLG00000022942)	zgc:92591 (ENSBSLG00000022917)	asb10 (ENSBSLG00000022907) #16	gbx1 (ENSBSLG00000022901) #17	AGAP3 (ENSBSLG00000022486) #18	RB1CC1 (ENSBSLG00000022306)	ST18 (ENSBSLG00000022269)	pcmtd1 (ENSBSLG00000022260)	SNTG1 (ENSBSLG00000022236)	snai2 (ENSBSLG00000022232)	ube2v2 (ENSBSLG00000022195)	mcm4 (ENSBSLG00000021654)	cebpd (ENSBSLG00000021638)	SPIDR (ENSBSLG00000021635)	mapre2 (ENSBSLG00000021632)
Protacanthopterygii	ANCESTRAL SPECIES	14	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00940000165468	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00970000196942	ENSGT00390000014839.a #25	ENSGT00940000159126 #24	ENSGT00940000160805 #22	ENSGT00940000164727	ENSGT01100000263569.a.a	ENSGT00940000158974 #16	ENSGT00940000154365.a.a #17	ENSGT00940000159586 #18	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154511.b	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
Northern pike	MODERN SPECIES	2	CCDC13 (ENSELUG00000022950)	hig1a (ENSELUG00000022924)	ACKR2 (ENSELUG00000001350)	cyp8b1.2 (ENSELUG00000026541)	gjc2 (ENSELUG00000022675)	iba57 (ENSELUG00000022717)	jmjd4 (ENSELUG00000022668)	snap47 (ENSELUG00000022622)	wnt9a (ENSELUG00000022603)	wnt3a (ENSELUG00000022562)	arf1 (ENSELUG00000022533)	zgc:63882 (ENSELUG00000022509)	guk1a (ENSELUG00000022500)	atg9b (ENSELUG00000022336) #25	abcb8 (ENSELUG00000022262) #24	cdk5 (ENSELUG00000022250) #22	asic1c (ENSELUG00000022201)	zgc:92591 (ENSELUG00000022181)	asb10 (ENSELUG00000022169) #16	gbx1 (ENSELUG00000022141) #17	AGAP3 (ENSELUG00000022117) #18	RB1CC1 (ENSELUG00000022064)	ST18 (ENSELUG00000021998)	pcmtd1 (ENSELUG00000021947)	SNTG1 (ENSELUG00000021900)	SNAI2 (ENSELUG00000021795)	ube2v2 (ENSELUG00000029938)	mcm4 (ENSELUG00000021720)	cebpd (ENSELUG00000021661)	SPIDR (ENSELUG00000021622)	mapre2 (ENSELUG00000021574)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	86	ENSGT00940000153709.B.`c.a	ENSGT00940000153709.B.`c.b	ENSGT01090000260005.a.a.a.b.a.a.a.f	ENSGT00940000159380.d	ENSGT00950000182843.b.j	ENSGT00940000159618.e	ENSGT00940000160510.e.b	ENSGT00940000165468.h.b	ENSGT00390000005590.d	ENSGT00940000155815.q.c	ENSGT00940000154756.A.cc	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A.bc.a	ENSGT00970000196942.b	ENSGT00390000014839.a.c #25	ENSGT00940000160805.s.a #22	ENSGT00940000164727.eb.b	ENSGT00940000158974 #16	ENSGT00940000154365.a.a.d #17	ENSGT00940000159586.db #18	ENSGT00390000015871.i	ENSGT00940000159905.w	ENSGT00950000183032.A.b.b.a.f	ENSGT00950000182863.B.a.b	ENSGT00940000154511.b.a	ENSGT00740000115534.a.b.o.b	ENSGT01050000244824.A.s.a	ENSGT00940000163032.o	ENSGT00390000014654	ENSGT00490000043329.a.a.b.k	ENSGT00940000153897.a.y
Huchen	MODERN SPECIES	112					wnt9a (ENSHHUG00000028338)	ENSHHUG00000028323	arf1 (ENSHHUG00000028289)	zgc:63882 (ENSHHUG00000028275)	guk1a (ENSHHUG00000028260)	ENSHHUG00000028179	ENSHHUG00000028173	ENSHHUG00000028166	ENSHHUG00000028118	ENSHHUG00000028103	atg9b (ENSHHUG00000028090) #25	cdk5 (ENSHHUG00000027887) #22	ENSHHUG00000027853	asb10 (ENSHHUG00000027843) #16	gbx1 (ENSHHUG00000027841) #17	AGAP3 (ENSHHUG00000027750) #18	RB1CC1 (ENSHHUG00000027722)	ST18 (ENSHHUG00000027717)	pcmtd1 (ENSHHUG00000027709)	SNTG1 (ENSHHUG00000027681)
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00940000153709.B.`c.b	ENSGT01090000260005.a.a.a.b.a.a.a.f	ENSGT00990000212116	ENSGT00940000159380.d	ENSGT00950000182843.b.j	ENSGT00940000159618.e	ENSGT00940000160510.e.b	ENSGT00940000165468.h.b	ENSGT00390000005590.d	ENSGT00940000155815.q.c	ENSGT00940000154756.A.cc	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A.bc.a	ENSGT00970000196942.b	ENSGT00390000014839.a.c #25	ENSGT00940000160805.s.a #22	ENSGT00940000164727.eb.b	ENSGT00940000158974 #16	ENSGT00940000154365.a.a.d #17	ENSGT00940000159586.db #18	ENSGT00390000015871.i	ENSGT00940000159905.w	ENSGT00950000183032.A.b.b.a.f	ENSGT00950000182863.B.a.b	ENSGT00940000154511.b.a	ENSGT00740000115534.a.b.o.b	ENSGT01050000244824.A.s.a	ENSGT00940000163032.o	ENSGT00390000014654	ENSGT00490000043329.a.a.b.k	ENSGT00940000153897.a.y
Salmo	ANCESTRAL SPECIES	5	ENSGT00940000153709.B.`c.b	ENSGT01090000260005.a.a.a.b.a.a.a.f	ENSGT00990000212116	ENSGT00940000159380.d	ENSGT00950000182843.b.j	ENSGT00940000159618.e	ENSGT00940000160510.e.b	ENSGT00940000165468.h.b	ENSGT00390000005590.d	ENSGT00940000155815.q.c	ENSGT00940000154756.A.cc	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A.bc.a	ENSGT00970000196942.b	ENSGT00390000014839.a.c #25	ENSGT00940000160805.s.a #22	ENSGT00940000164727.eb.b	ENSGT00940000158974 #16	ENSGT00940000154365.a.a.d #17	ENSGT00940000159586.db #18	ENSGT00390000015871.i	ENSGT00940000159905.w	ENSGT00950000183032.A.b.b.a.f	ENSGT00950000182863.B.a.b	ENSGT00940000154511.b.a	ENSGT00740000115534.a.b.o.b	ENSGT01050000244824.A.s.a	ENSGT00940000163032.o	ENSGT00390000014654	ENSGT00490000043329.a.a.b.k	ENSGT00940000153897.a.y
River trout	MODERN SPECIES	24	CYP8B1 (ENSSTUG00000050004)	ENSSTUG00000050006	jmjd4 (ENSSTUG00000050009)	snap47 (ENSSTUG00000050010)	ENSSTUG00000050014	wnt9a (ENSSTUG00000050016)	wnt3a (ENSSTUG00000050020)	arf1 (ENSSTUG00000050022)	zgc:63882 (ENSSTUG00000050024)	guk1a (ENSSTUG00000050025)	ENSSTUG00000050032	ENSSTUG00000050038	ENSSTUG00000050046	ENSSTUG00000050060	atg9b (ENSSTUG00000050065) #25	cdk5 (ENSSTUG00000050067) #22	asic1c (ENSSTUG00000050075)	asb10 (ENSSTUG00000050086) #16	gbx1 (ENSSTUG00000050089) #17	AGAP3 (ENSSTUG00000050108) #18	RB1CC1 (ENSSTUG00000050194)	ST18 (ENSSTUG00000050253)	pcmtd1 (ENSSTUG00000050292)	SNTG1 (ENSSTUG00000050297)	SNAI2 (ENSSTUG00000050330)	ube2v2 (ENSSTUG00000050333)	mcm4 (ENSSTUG00000050439)	cebpd (ENSSTUG00000050446)	SPIDR (ENSSTUG00000050448)	mapre2 (ENSSTUG00000050454)	dtna (ENSSTUG00000050468)
Atlantic salmon	MODERN SPECIES	22	pth1r (ENSSSAG00000075121)	tmie (ENSSSAG00000075098)	ccdc13 (ENSSSAG00000075091)	ENSSSAG00000105949	ENSSSAG00000117622	ENSSSAG00000075076	jmjd4 (ENSSSAG00000104962)	snap47 (ENSSSAG00000075073)	wnt9a (ENSSSAG00000096426)	ENSSSAG00000075007	arf1 (ENSSSAG00000074998)	zgc:63882 (ENSSSAG00000102224)	kgua (ENSSSAG00000087401)	CATH-1A (ENSSSAG00000074950)	ENSSSAG00000074940 #25	ENSSSAG00000118300 #22	asic1c (ENSSSAG00000048005)	asb10 (ENSSSAG00000074859) #16	gbx1 (ENSSSAG00000074857) #17	AGAP3 (ENSSSAG00000073179) #18	RB1CC1 (ENSSSAG00000071295)	ST18 (ENSSSAG00000071181)	pcmtd1 (ENSSSAG00000071153)	SNTG1 (ENSSSAG00000038787)	snai2 (ENSSSAG00000071101)	ube2v2 (ENSSSAG00000071078)	mcm4 (ENSSSAG00000070777)	SPIDR (ENSSSAG00000070763)	mapre2 (ENSSSAG00000070759)	dtna (ENSSSAG00000070459)	KLHL14 (ENSSSAG00000070437)
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT01000000221856	ENSGT00940000153709.B.`c.a	ENSGT00940000153709.B.`c.b	ENSGT01090000260005.a.a.a.b.a.a.a.f	ENSGT00990000212116	ENSGT00940000159380.d	ENSGT00950000182843.b.j	ENSGT00940000159618.e	ENSGT00940000160510.e.b	ENSGT00940000165468.h.b	ENSGT00390000005590.d	ENSGT00940000155815.q.c	ENSGT00940000154756.A.cc	ENSGT00970000196942.b	ENSGT00390000014839.a.c #25	ENSGT00940000160805.s.a #22	ENSGT00940000164727.eb.b	ENSGT00940000158974 #16	ENSGT00940000154365.a.a.d #17	ENSGT00940000159586.db #18	ENSGT00390000015871.i	ENSGT00940000159905.w	ENSGT00950000183032.A.b.b.a.f	ENSGT00950000182863.B.a.b	ENSGT00940000154511.b.a	ENSGT00740000115534.a.b.o.b	ENSGT01050000244824.A.s.a	ENSGT00940000163032.o	ENSGT00390000014654	ENSGT00490000043329.a.a.b.k	ENSGT00940000153897.a.y
Oncorhynchus_a	ANCESTRAL SPECIES	22	ENSGT01000000221856	ENSGT00940000153709.B.`c.a	ENSGT00940000153709.B.`c.b	ENSGT01090000260005.a.a.a.b.a.a.a.f	ENSGT00990000212116	ENSGT00940000159380.d	ENSGT00950000182843.b.j	ENSGT00940000159618.e	ENSGT00940000160510.e.b	ENSGT00940000165468.h.b	ENSGT00390000005590.d	ENSGT00940000155815.q.c	ENSGT00940000154756.A.cc	ENSGT00970000196942.b	ENSGT00390000014839.a.c #25	ENSGT00940000160805.s.a #22	ENSGT00940000164727.eb.b	ENSGT00940000158974 #16	ENSGT00940000154365.a.a.d #17	ENSGT00940000159586.db #18	ENSGT00390000015871.i	ENSGT00940000159905.w	ENSGT00950000183032.A.b.b.a.f	ENSGT00950000182863.B.a.b	ENSGT00940000154511.b.a	ENSGT00740000115534.a.b.o.b	ENSGT01050000244824.A.s.a	ENSGT00940000163032.o	ENSGT00390000014654	ENSGT00490000043329.a.a.b.k	ENSGT00940000153897.a.y
Coho salmon	MODERN SPECIES	19	ENSOKIG00005036289	CYP8B1 (ENSOKIG00005036307)	CYP8B1 (ENSOKIG00005036319)	ENSOKIG00005036337	ENSOKIG00005036360	ENSOKIG00005036373	jmjd4 (ENSOKIG00005036439)	snap47 (ENSOKIG00005036449)	wnt9a (ENSOKIG00005036461)	ENSOKIG00005036510	arf1 (ENSOKIG00005036591)	zgc:63882 (ENSOKIG00005036633)	guk1a (ENSOKIG00005036691)	ENSOKIG00005037021	ATG9B (ENSOKIG00005037064) #25	CDK5 (ENSOKIG00005010623) #22	asic1c (ENSOKIG00005010680)	ENSOKIG00005010796	asb10 (ENSOKIG00005010800) #16	gbx1 (ENSOKIG00005010810) #17	AGAP3 (ENSOKIG00005010889) #18	RB1CC1 (ENSOKIG00005012074)	ST18 (ENSOKIG00005012162)	pcmtd1 (ENSOKIG00005012295)	SNTG1 (ENSOKIG00005012321)	SNAI2 (ENSOKIG00005012435)	ENSOKIG00005012448	ube2v2 (ENSOKIG00005015575)	mcm4 (ENSOKIG00005012623)	ENSOKIG00005015667	cebpd (ENSOKIG00005015672)
Salmoninae	ANCESTRAL SPECIES	24	ENSGT01020000230359.E	ENSGT00940000153709.B.ac	ENSGT01090000260005.a.a.a.b.a.a.a.e	ENSGT00390000006465	ENSGT00940000159380.c	ENSGT00950000182843.b.i	ENSGT00940000159618.f	ENSGT00940000160510.e.a	ENSGT00940000165468.h.a	ENSGT00390000005590.c	ENSGT00940000155815.q.d	ENSGT00940000154756.A.bc.b	ENSGT00970000196942.a	ENSGT00390000014839.a.d #25	ENSGT00940000159126 #24	ENSGT00940000160805.s.b #22	ENSGT00940000164727.eb.a	ENSGT01100000263569.a.a	ENSGT00940000154365.a.a.c #17	ENSGT00940000159586.eb #18
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00940000153709.B.ac	ENSGT01090000260005.a.a.a.b.a.a.a.e	ENSGT00390000006465	ENSGT00940000159380.c	ENSGT00950000182843.b.i	ENSGT00940000159618.f	ENSGT00940000160510.e.a	ENSGT00940000165468.h.a	ENSGT00390000005590.c	ENSGT00940000155815.q.d	ENSGT00940000154756.A.bc.b	ENSGT00970000196942.a.a	ENSGT00970000196942.a.b	ENSGT00390000014839.a.d #25	ENSGT00940000159126 #24	ENSGT00940000160805.s.b #22	ENSGT00940000164727.eb.a	ENSGT01100000263569.a.a	ENSGT00940000154365.a.a.c #17	ENSGT00940000159586.eb #18	ENSGT00390000015871.j	ENSGT00940000159905.x	ENSGT00950000183032.A.b.b.a.e	ENSGT00950000182863.B.a.a	ENSGT00940000154511.b.b	ENSGT00740000115534.a.b.o.a	ENSGT01050000244824.A.s.b	ENSGT00940000163032.p	ENSGT00490000043329.a.a.b.l	ENSGT00940000153897.a.z	ENSGT00940000166855
Salmo	ANCESTRAL SPECIES	21	ENSGT00940000153709.B.ac	ENSGT01090000260005.a.a.a.b.a.a.a.e	ENSGT00390000006465	ENSGT00940000159380.c	ENSGT00950000182843.b.i	ENSGT00940000159618.f	ENSGT00940000160510.e.a	ENSGT00940000165468.h.a	ENSGT00390000005590.c	ENSGT00940000155815.q.d	ENSGT00940000154756.A.bc.b	ENSGT00970000196942.a.a	ENSGT00970000196942.a.b	ENSGT00390000014839.a.d #25	ENSGT00940000159126 #24	ENSGT00940000160805.s.b #22	ENSGT00940000164727.eb.a	ENSGT01100000263569.a.a	ENSGT00940000154365.a.a.c #17	ENSGT00940000159586.eb #18	ENSGT00390000015871.j	ENSGT00940000159905.x	ENSGT00950000183032.A.b.b.a.e	ENSGT00950000182863.B.a.a	ENSGT00940000154511.b.b	ENSGT00740000115534.a.b.o.a	ENSGT01050000244824.A.s.b	ENSGT00940000163032.p	ENSGT00490000043329.a.a.b.l	ENSGT00940000153897.a.z	ENSGT00940000166855
River trout	MODERN SPECIES	13	iba57 (ENSSTUG00000012038)	ENSSTUG00000012020	snap47 (ENSSTUG00000012009)	wnt9a (ENSSTUG00000011978)	wnt3a (ENSSTUG00000011959)	arf1 (ENSSTUG00000011952)	zgc:63882 (ENSSTUG00000011946)	guk1a (ENSSTUG00000011933)	ENSSTUG00000011909	ENSSTUG00000011889	ENSSTUG00000011809	ENSSTUG00000011778	ENSSTUG00000011746	atg9b (ENSSTUG00000011733) #25	abcb8 (ENSSTUG00000011038) #24	cdk5 (ENSSTUG00000011004) #22	asic1c (ENSSTUG00000010965)	zgc:92591 (ENSSTUG00000010956)	gbx1 (ENSSTUG00000010950) #17	AGAP3 (ENSSTUG00000008467) #18	RB1CC1 (ENSSTUG00000008258)	ST18 (ENSSTUG00000008180)	pcmtd1 (ENSSTUG00000008156)	SNTG1 (ENSSTUG00000007973)	SNAI2 (ENSSTUG00000007961)	ube2v2 (ENSSTUG00000007810)	mcm4 (ENSSTUG00000007059)	cebpd (ENSSTUG00000007027)	ENSSTUG00000007020	mapre2 (ENSSTUG00000007016)	dtna (ENSSTUG00000006673)
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000097326	ENSSSAG00000121438	snap47 (ENSSSAG00000107907)	wnt9a (ENSSSAG00000049857)	ENSSSAG00000109403	wnt3a (ENSSSAG00000092832)	arf1 (ENSSSAG00000104948)	cssa14h1orf35 (ENSSSAG00000049571)	guk1 (ENSSSAG00000111657)	ENSSSAG00000049398	ENSSSAG00000049346	ENSSSAG00000049319	ENSSSAG00000049270	atg9b (ENSSSAG00000049245) #25	ENSSSAG00000048268 #24	cdk5 (ENSSSAG00000111176) #22	asic1c (ENSSSAG00000074872)	zgc:92591 (ENSSSAG00000110359)	gbx1 (ENSSSAG00000047975) #17	ENSSSAG00000111763	AGAP3 (ENSSSAG00000045432) #18	ENSSSAG00000092930	RB1CC1 (ENSSSAG00000040196)	ENSSSAG00000094155	ST18 (ENSSSAG00000039855)	pcmtd1 (ENSSSAG00000039804)	SNTG1 (ENSSSAG00000071111)	SNAI2 (ENSSSAG00000090597)	ube2v2 (ENSSSAG00000081709)	mcm4 (ENSSSAG00000081704)	mapre2 (ENSSSAG00000081701)
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00940000153709.B.ac	ENSGT01090000260005.a.a.a.b.a.a.a.e	ENSGT00390000006465	ENSGT00940000159380.c	ENSGT00950000182843.b.i	ENSGT00940000159618.f	ENSGT00940000160510.e.a	ENSGT00940000165468.h.a	ENSGT00390000005590.c	ENSGT00940000155815.q.d	ENSGT00940000154756.A.bc.b	ENSGT00970000196942.a.a	ENSGT00970000196942.a.b	ENSGT00390000014839.a.d #25	ENSGT00940000159126 #24	ENSGT00940000160805.s.b #22	ENSGT00940000164727.eb.a	ENSGT01100000263569.a.a	ENSGT00940000154365.a.a.c #17	ENSGT00940000159586.eb #18	ENSGT00390000015871.j	ENSGT00940000159905.x	ENSGT00950000183032.A.b.b.a.e	ENSGT00950000182863.B.a.a	ENSGT00940000154511.b.b	ENSGT00740000115534.a.b.o.a	ENSGT01050000244824.A.s.b	ENSGT00940000163032.p	ENSGT00490000043329.a.a.b.l	ENSGT00940000153897.a.z	ENSGT00940000166855
Oncorhynchus_a	ANCESTRAL SPECIES	24	ENSGT00940000153709.B.ac	ENSGT01090000260005.a.a.a.b.a.a.a.e	ENSGT00390000006465	ENSGT00940000159380.c	ENSGT00950000182843.b.i	ENSGT00940000159618.f	ENSGT00940000160510.e.a	ENSGT00940000165468.h.a	ENSGT00390000005590.c	ENSGT00940000155815.q.d	ENSGT00940000154756.A.bc.b	ENSGT00970000196942.a.a	ENSGT00970000196942.a.b	ENSGT00390000014839.a.d #25	ENSGT00940000159126 #24	ENSGT00940000160805.s.b #22	ENSGT00940000164727.eb.a	ENSGT01100000263569.a.a	ENSGT00940000154365.a.a.c #17	ENSGT00940000159586.eb #18	ENSGT00390000015871.j	ENSGT00940000159905.x	ENSGT00950000183032.A.b.b.a.e	ENSGT00950000182863.B.a.a	ENSGT00940000154511.b.b	ENSGT00740000115534.a.b.o.a	ENSGT01050000244824.A.s.b	ENSGT00940000163032.p	ENSGT00490000043329.a.a.b.l	ENSGT00940000153897.a.z	ENSGT00940000166855
Coho salmon	MODERN SPECIES	23	ENSOKIG00005046534	IBA57 (ENSOKIG00005046527)	ENSOKIG00005046525	wnt9a (ENSOKIG00005046511)	wnt3a (ENSOKIG00005046495)	arf1 (ENSOKIG00005046487)	zgc:63882 (ENSOKIG00005046482)	guk1a (ENSOKIG00005046473)	ENSOKIG00005046469	ENSOKIG00005046427	ENSOKIG00005046413	ENSOKIG00005046410	ENSOKIG00005046399	atg9b (ENSOKIG00005046390) #25	abcb8 (ENSOKIG00005045671) #24	cdk5 (ENSOKIG00005045617) #22	asic1c (ENSOKIG00005045576)	zgc:92591 (ENSOKIG00005045562)	gbx1 (ENSOKIG00005045547) #17	AGAP3 (ENSOKIG00005044247) #18	RB1CC1 (ENSOKIG00005043923)	ST18 (ENSOKIG00005043866)	pcmtd1 (ENSOKIG00005043814)	SNTG1 (ENSOKIG00005043681)	SNAI2 (ENSOKIG00005043628)	ube2v2 (ENSOKIG00005043488)	mcm4 (ENSOKIG00005042602)	cebpd (ENSOKIG00005042535)	mapre2 (ENSOKIG00005042521)	dtna (ENSOKIG00005042216)	ENSOKIG00005042070
Chinook salmon	MODERN SPECIES	1	CYP8B1 (ENSOTSG00005024060)	GJC2 (ENSOTSG00005024059)	iba57 (ENSOTSG00005024057)	jmjd4 (ENSOTSG00005024055)	snap47 (ENSOTSG00005024050)	wnt9a (ENSOTSG00005024031)	wnt3a (ENSOTSG00005024029)	zgc:63882 (ENSOTSG00005024028)	guk1a (ENSOTSG00005024027)	ENSOTSG00005024025	ENSOTSG00005024020	ENSOTSG00005024019	ENSOTSG00005024018	atg9b (ENSOTSG00005024017) #25	abcb8 (ENSOTSG00005022712) #24	cdk5 (ENSOTSG00005022708) #22	asic1c (ENSOTSG00005022638)	zgc:92591 (ENSOTSG00005022636)	gbx1 (ENSOTSG00005022634) #17	AGAP3 (ENSOTSG00005021973) #18	ENSOTSG00005021966	ENSOTSG00005021965	ENSOTSG00005021964	DHX30 (ENSOTSG00005021618)	wrnip1 (ENSOTSG00005021615)	MYLK4 (ENSOTSG00005021614)	dusp16 (ENSOTSG00005021613)	RB1CC1 (ENSOTSG00005020635)	ST18 (ENSOTSG00005020629)	pcmtd1 (ENSOTSG00005020619)	SNTG1 (ENSOTSG00005020496)
Rainbow trout	MODERN SPECIES	29	iba57 (ENSOMYG00000029038)	ENSOMYG00000029024	snap47 (ENSOMYG00000028963)	wnt9a (ENSOMYG00000028943)	wnt3a (ENSOMYG00000028815)	arf1 (ENSOMYG00000052393)	zgc:63882 (ENSOMYG00000028745)	guk1a (ENSOMYG00000028695)	ENSOMYG00000028625	ENSOMYG00000028470	ENSOMYG00000028365	ENSOMYG00000054775	ENSOMYG00000028303	atg9b (ENSOMYG00000028292) #25	ENSOMYG00000027030 #24	cdk5 (ENSOMYG00000026617) #22	asic1c (ENSOMYG00000026444)	zgc:92591 (ENSOMYG00000067767)	gbx1 (ENSOMYG00000026337) #17	ENSOMYG00000053122	AGAP3 (ENSOMYG00000025622) #18	RB1CC1 (ENSOMYG00000025339)	ST18 (ENSOMYG00000025223)	pcmtd1 (ENSOMYG00000025156)	SNTG1 (ENSOMYG00000024969)	SNAI2 (ENSOMYG00000024876)	ube2v2 (ENSOMYG00000024616)	mcm4 (ENSOMYG00000023779)	cebpd (ENSOMYG00000023544)	ENSOMYG00000075412	mapre2 (ENSOMYG00000023514)
Huchen	MODERN SPECIES	1694												ENSHHUG00000052677	ENSHHUG00000052678	atg9b (ENSHHUG00000052679) #25	abcb8 (ENSHHUG00000052680) #24	cdk5 (ENSHHUG00000052681) #22	asic1c (ENSHHUG00000052682)	zgc:92591 (ENSHHUG00000052683)	gbx1 (ENSHHUG00000052684) #17	AGAP3 (ENSHHUG00000052685) #18
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000160805.t #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000160805.t #22
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	452														ENSGT00940000177684.h.a	ENSGT00940000177917.c.b.a	ENSGT00940000160805.t.a #22
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	175															ENSSSAG00000099813	ENSSSAG00000063309 #22
Atlantic salmon	MODERN SPECIES	27	ENSSSAG00000015934	gucy1a1 (ENSSSAG00000039183)	slc25a4 (ENSSSAG00000039228)	HELT (ENSSSAG00000039295)	acsl1a (ENSSSAG00000039945)	CASP3 (ENSSSAG00000057265)	ENSSSAG00000057239	ENSSSAG00000107241	ENSSSAG00000063221	ENSSSAG00000057816	ENSSSAG00000063223	ENSSSAG00000063258	rs6 (ENSSSAG00000063229)	ENSSSAG00000063267	ENSSSAG00000020129	ENSSSAG00000049533 #22	ENSSSAG00000118056	ENSSSAG00000004280	ENSSSAG00000091902
River trout	MODERN SPECIES	33	MYOD1 (ENSSTUG00000016988)	zgc:172145 (ENSSTUG00000016985)	ENSSTUG00000016981	LRTM2 (ENSSTUG00000016977)	ENSSTUG00000015707	ENSSTUG00000013806	urahb (ENSSTUG00000013349)	ENSSTUG00000013296	GLG1 (ENSSTUG00000012698)	RFWD3 (ENSSTUG00000012610)	MLKL (ENSSTUG00000012572)	etfbkmt (ENSSTUG00000012566)	amn1 (ENSSTUG00000012549)	ENSSTUG00000012536	ENSSTUG00000012523	ENSSTUG00000012494 #22	nfybb (ENSSTUG00000012435)	ENSSTUG00000012333	WASHC4 (ENSSTUG00000012085)	cnot2 (ENSSTUG00000011305)	ENSSTUG00000011271	fnbp4 (ENSSTUG00000011247)	AVPR1A (ENSSTUG00000011238)	ppm1h (ENSSTUG00000011185)	MON2 (ENSSTUG00000010897)	ENSSTUG00000008803	ENSSTUG00000008716	fbln1 (ENSSTUG00000008277)	ENSSTUG00000008264	WNT7B (ENSSTUG00000008252)	pparab (ENSSTUG00000008239)
Salmo	ANCESTRAL SPECIES																	ENSGT00940000160805.t.b #22
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000082912	ENSSSAG00000088613	ENSSSAG00000097782	ENSSSAG00000043955	SH3BGRL (ENSSSAG00000116254)	ENSSSAG00000038996	ENSSSAG00000089563	ENSSSAG00000021509	ENSSSAG00000113182	ENSSSAG00000098602	ENSSSAG00000098968	ENSSSAG00000094961	ENSSSAG00000105540	ENSSSAG00000082996	ENSSSAG00000109101	ENSSSAG00000063314 #22	ENSSSAG00000049500	ENSSSAG00000103625	ENSSSAG00000049465	ENSSSAG00000049347	ENSSSAG00000043804	ENSSSAG00000104634	atg16l1 (ENSSSAG00000094653)	ENSSSAG00000043061	cldn15lb (ENSSSAG00000043076)	ENSSSAG00000121877	ENSSSAG00000090458	fgf12 (ENSSSAG00000043432)	ENSSSAG00000085533	ENSSSAG00000043510	masp1 (ENSSSAG00000043562)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	7805																ENSHHUG00000020060 #22
Huchen	MODERN SPECIES	9516																ENSHHUG00000040058 #22