Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT00940000155594 #7	ENSGT00940000154025.a #8	ENSGT00390000010763 #9	ENSGT00940000159342 #10	ENSGT00940000159758 #11	ENSGT00940000154427.B #12	ENSGT00940000164153 #13	ENSGT00940000163183 #14	ENSGT00390000004681 #15	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a #24	ENSGT00940000162943 #25	ENSGT00940000163493	ENSGT00940000163360 #26	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #27	ENSGT00940000153378.a.a #28	ENSGT00940000154560.b #29	ENSGT00940000154560.a ##29	ENSGT00940000153378.b.b.q.b ##28	ENSGT00940000159966.A	ENSGT00940000161506.m.a #32	ENSGT00730000111801	ENSGT00940000153378.b.b.q.a #33	ENSGT00520000061332
Guinea pig	MODERN SPECIES	95	PUF60 (ENSCPOG00000014613) #7	SCRIB (ENSCPOG00000014605) #8	IQANK1 (ENSCPOG00000020895) #9	FAM83H (ENSCPOG00000013323) #10	MAPK15 (ENSCPOG00000013318) #11	CCDC166 (ENSCPOG00000024168) #12	ENSCPOG00000032341 #13	ZNF623 (ENSCPOG00000009794) #14	GFUS (ENSCPOG00000000051) #15	PYCR3 (ENSCPOG00000039640) #16	TIGD5 (ENSCPOG00000039267) #17	EEF1D (ENSCPOG00000000048) #18	NAPRT (ENSCPOG00000000047) #19	MROH6 (ENSCPOG00000000046) #20	GSDMD (ENSCPOG00000000044) #21	ZC3H3 (ENSCPOG00000006248) #22	MAFA (ENSCPOG00000021977) #23	RHPN1 (ENSCPOG00000006972) #24	TOP1MT (ENSCPOG00000022690) #25	GLI4 (ENSCPOG00000040511) #26	ZFP41 (ENSCPOG00000040680) #27	GPIHBP1 (ENSCPOG00000040336) #28	LY6H (ENSCPOG00000037598) #29	ENSCPOG00000033154 #30	ENSCPOG00000013558 #31	ENSCPOG00000024809 #32	LY6E (ENSCPOG00000034097) #33	ENSCPOG00000034677 #34	ENSCPOG00000014091 #35	ENSCPOG00000039291 #36	ENSCPOG00000024688 #37
Hystricomorpha_b	ANCESTRAL SPECIES	27	ENSGT00940000155594 #7	ENSGT00940000154025.a #8	ENSGT00390000010763 #9	ENSGT00940000159342 #10	ENSGT00940000159758 #11	ENSGT00940000154427.B #12	ENSGT00940000164153 #13	ENSGT00940000163183 #14	ENSGT00390000004681 #15	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a #24	ENSGT00940000162943 #25	ENSGT00940000163493	ENSGT00940000163360 #26	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #27	ENSGT00940000153378.a.a #28	ENSGT00940000154560.b #29	ENSGT00940000154560.a ##29	ENSGT00940000153378.b.b.q.b ##28	ENSGT00940000159966.A	ENSGT00940000161506.m.a #32	ENSGT00730000111801	ENSGT00940000153378.b.b.q.a #33	ENSGT00520000061332
Long-tailed chinchilla	MODERN SPECIES	161	PUF60 (ENSCLAG00000009154) #7	SCRIB (ENSCLAG00000010805) #8	IQANK1 (ENSCLAG00000013041) #9	FAM83H (ENSCLAG00000013519) #10	MAPK15 (ENSCLAG00000011011) #11	CCDC166 (ENSCLAG00000008849) #12	ENSCLAG00000011044 #13	ZNF623 (ENSCLAG00000014678) #14	GFUS (ENSCLAG00000008907) #15	PYCR3 (ENSCLAG00000010276) #16	TIGD5 (ENSCLAG00000018021) #17	ENSCLAG00000008571 #18	NAPRT (ENSCLAG00000014862) #19	MROH6 (ENSCLAG00000014422) #20	GSDMD (ENSCLAG00000009094) #21	ZC3H3 (ENSCLAG00000009999) #22	MAFA (ENSCLAG00000018099) #23	RHPN1 (ENSCLAG00000012218) #24	TOP1MT (ENSCLAG00000013877) #25	ZNF696 (ENSCLAG00000012633)	GLI4 (ENSCLAG00000012388) #26	ZFP41 (ENSCLAG00000009799) #27	GPIHBP1 (ENSCLAG00000008784) #28	LY6H (ENSCLAG00000008479) #29	LY6L (ENSCLAG00000010712) ##29	ENSCLAG00000013664 ##28	GML (ENSCLAG00000010524)	ENSCLAG00000013354 #32	ENSCLAG00000012302	ENSCLAG00000014000 #33	ENSCLAG00000015365
Degu	MODERN SPECIES	145	ENSODEG00000014024 #7	SCRIB (ENSODEG00000013795) #8	IQANK1 (ENSODEG00000013696) #9	FAM83H (ENSODEG00000014158) #10	MAPK15 (ENSODEG00000014999) #11	CCDC166 (ENSODEG00000014189) #12	ENSODEG00000014226 #13	ENSODEG00000013485	GFUS (ENSODEG00000014465) #15	PYCR3 (ENSODEG00000015350) #16	TIGD5 (ENSODEG00000013505) #17	ENSODEG00000013624 #18	NAPRT (ENSODEG00000014091) #19	MROH6 (ENSODEG00000013415) #20	GSDMD (ENSODEG00000014859) #21	ZC3H3 (ENSODEG00000014239) #22	MAFA (ENSODEG00000020376) #23	RHPN1 (ENSODEG00000013521) #24	TOP1MT (ENSODEG00000013839) #25	ENSODEG00000014235	ZFP41 (ENSODEG00000020283) #27	GPIHBP1 (ENSODEG00000014571) #28	LY6H (ENSODEG00000013867) #29	ENSODEG00000020306	LY6E (ENSODEG00000014194) ##28	ENSODEG00000014405	ENSODEG00000013937	ENSODEG00000014076 ##31	ENSODEG00000014283	LY6D (ENSODEG00000013766)	ENSODEG00000014168 #28