Hystricomorpha	ANCESTRAL SPECIES	12	ENSGT00940000154025.a #8	ENSGT00390000010763 #9	ENSGT00940000159342 #10	ENSGT00940000159758 #11	ENSGT00940000154427.B #12	ENSGT00940000164153 #13	ENSGT00940000163183 #14	ENSGT00390000004681 #15	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT01100000266998	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a #24	ENSGT00940000162943 #25	ENSGT00940000163493 #26	ENSGT00940000163360 #27	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #28	ENSGT00940000153378.a.a #29	ENSGT00940000154560.b #30	ENSGT00940000154560.a #31	ENSGT00940000153378.b.b #32	ENSGT00730000111801 #35	ENSGT00940000161506.m.a #34	ENSGT00940000159966.A #33	ENSGT00940000159966.B ##33	ENSGT00520000061332 #37
Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT00940000155594 #7	ENSGT00940000154025.a #8	ENSGT00390000010763 #9	ENSGT00940000159342 #10	ENSGT00940000159758 #11	ENSGT00940000154427.B #12	ENSGT00940000164153 #13	ENSGT00940000163183 #14	ENSGT00390000004681 #15	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a #24	ENSGT00940000162943 #25	ENSGT00940000163493 #26	ENSGT00940000163360 #27	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #28	ENSGT00940000153378.a.a #29	ENSGT00940000154560.b #30	ENSGT00940000154560.a #31	ENSGT00940000153378.b.b.q.b #32	ENSGT00940000159966.A #33	ENSGT00940000161506.m.a #34	ENSGT00730000111801 #35	ENSGT00940000153378.b.b.q.a #36	ENSGT00520000061332 #37
Hystricomorpha_b	ANCESTRAL SPECIES	27	ENSGT00940000155594 #7	ENSGT00940000154025.a #8	ENSGT00390000010763 #9	ENSGT00940000159342 #10	ENSGT00940000159758 #11	ENSGT00940000154427.B #12	ENSGT00940000164153 #13	ENSGT00940000163183 #14	ENSGT00390000004681 #15	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a #24	ENSGT00940000162943 #25	ENSGT00940000163493 #26	ENSGT00940000163360 #27	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #28	ENSGT00940000153378.a.a #29	ENSGT00940000154560.b #30	ENSGT00940000154560.a #31	ENSGT00940000153378.b.b.q.b #32	ENSGT00940000159966.A #33	ENSGT00940000161506.m.a #34	ENSGT00730000111801 #35	ENSGT00940000153378.b.b.q.a #36	ENSGT00520000061332 #37
Long-tailed chinchilla	MODERN SPECIES	161	PUF60 (ENSCLAG00000009154) #7	SCRIB (ENSCLAG00000010805) #8	IQANK1 (ENSCLAG00000013041) #9	FAM83H (ENSCLAG00000013519) #10	MAPK15 (ENSCLAG00000011011) #11	CCDC166 (ENSCLAG00000008849) #12	ENSCLAG00000011044 #13	ZNF623 (ENSCLAG00000014678) #14	GFUS (ENSCLAG00000008907) #15	PYCR3 (ENSCLAG00000010276) #16	TIGD5 (ENSCLAG00000018021) #17	ENSCLAG00000008571 #18	NAPRT (ENSCLAG00000014862) #19	MROH6 (ENSCLAG00000014422) #20	GSDMD (ENSCLAG00000009094) #21	ZC3H3 (ENSCLAG00000009999) #22	MAFA (ENSCLAG00000018099) #23	RHPN1 (ENSCLAG00000012218) #24	TOP1MT (ENSCLAG00000013877) #25	ZNF696 (ENSCLAG00000012633) #26	GLI4 (ENSCLAG00000012388) #27	ZFP41 (ENSCLAG00000009799) #28	GPIHBP1 (ENSCLAG00000008784) #29	LY6H (ENSCLAG00000008479) #30	LY6L (ENSCLAG00000010712) #31	ENSCLAG00000013664 #32	GML (ENSCLAG00000010524) #33	ENSCLAG00000013354 #34	ENSCLAG00000012302 #35	ENSCLAG00000014000 #36	ENSCLAG00000015365 #37
Degu	MODERN SPECIES	145	ENSODEG00000014024 #7	SCRIB (ENSODEG00000013795) #8	IQANK1 (ENSODEG00000013696) #9	FAM83H (ENSODEG00000014158) #10	MAPK15 (ENSODEG00000014999) #11	CCDC166 (ENSODEG00000014189) #12	ENSODEG00000014226 #13	ENSODEG00000013485	GFUS (ENSODEG00000014465) #15	PYCR3 (ENSODEG00000015350) #16	TIGD5 (ENSODEG00000013505) #17	ENSODEG00000013624 #18	NAPRT (ENSODEG00000014091) #19	MROH6 (ENSODEG00000013415) #20	GSDMD (ENSODEG00000014859) #21	ZC3H3 (ENSODEG00000014239) #22	MAFA (ENSODEG00000020376) #23	RHPN1 (ENSODEG00000013521) #24	TOP1MT (ENSODEG00000013839) #25	ENSODEG00000014235	ZFP41 (ENSODEG00000020283) #28	GPIHBP1 (ENSODEG00000014571) #29	LY6H (ENSODEG00000013867) #30	ENSODEG00000020306	LY6E (ENSODEG00000014194) ##29	ENSODEG00000014405	ENSODEG00000013937 #35	ENSODEG00000014076 ##34	ENSODEG00000014283 #37	LY6D (ENSODEG00000013766)	ENSODEG00000014168 #29
Guinea pig	MODERN SPECIES	95	PUF60 (ENSCPOG00000014613) #7	SCRIB (ENSCPOG00000014605) #8	IQANK1 (ENSCPOG00000020895) #9	FAM83H (ENSCPOG00000013323) #10	MAPK15 (ENSCPOG00000013318) #11	CCDC166 (ENSCPOG00000024168) #12	ENSCPOG00000032341 #13	ZNF623 (ENSCPOG00000009794) #14	GFUS (ENSCPOG00000000051) #15	PYCR3 (ENSCPOG00000039640) #16	TIGD5 (ENSCPOG00000039267) #17	EEF1D (ENSCPOG00000000048) #18	NAPRT (ENSCPOG00000000047) #19	MROH6 (ENSCPOG00000000046) #20	GSDMD (ENSCPOG00000000044) #21	ZC3H3 (ENSCPOG00000006248) #22	MAFA (ENSCPOG00000021977) #23	RHPN1 (ENSCPOG00000006972) #24	TOP1MT (ENSCPOG00000022690) #25	GLI4 (ENSCPOG00000040511) #27	ZFP41 (ENSCPOG00000040680) #28	GPIHBP1 (ENSCPOG00000040336) #29	LY6H (ENSCPOG00000037598) #30	ENSCPOG00000033154	ENSCPOG00000013558 ##34	ENSCPOG00000024809 #34	LY6E (ENSCPOG00000034097) #36	ENSCPOG00000034677	ENSCPOG00000014091	ENSCPOG00000039291	ENSCPOG00000024688
Naked mole-rat female	MODERN SPECIES	1	PUF60 (ENSHGLG00000006111) #7	FAM83H (ENSHGLG00000016899) #10	MAPK15 (ENSHGLG00000044970) #11	ENSHGLG00000015050 #12	ENSHGLG00000039178 #12	ENSHGLG00000039255 #13	ZNF623 (ENSHGLG00000044862) #14	GFUS (ENSHGLG00000009464) #15	ENSHGLG00000006778 #16	TIGD5 (ENSHGLG00000007775) #17	ENSHGLG00000038349	ENSHGLG00000043389 #18	NAPRT (ENSHGLG00000013733) #19	MROH6 (ENSHGLG00000018619) #20	GSDMD (ENSHGLG00000008317) #21	ZC3H3 (ENSHGLG00000011234) #22	MAFA (ENSHGLG00000020639) #23	RHPN1 (ENSHGLG00000007767) #24	GLI4 (ENSHGLG00000036792) #27	ZFP41 (ENSHGLG00000005516) #28	GPIHBP1 (ENSHGLG00000043232) #29	ENSHGLG00000032185 #30	ENSHGLG00000045037 #31	ENSHGLG00000004712	ENSHGLG00000006100	ENSHGLG00000042259 #32	ENSHGLG00000036086 #35	ENSHGLG00000016698 #34	ENSHGLG00000007913 #34	ENSHGLG00000042859 #33	ENSHGLG00000050763 ##33