Rodentia_A	ANCESTRAL SPECIES	18	ENSGT00940000154025.a #8	ENSGT00390000010763 #9	ENSGT00940000159342 #10	ENSGT00940000159758 #11	ENSGT00940000154427.B #12	ENSGT00940000164153 #13	ENSGT00940000163183 #14	ENSGT00390000004681 #15	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT01100000266998	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a #24	ENSGT00940000162943 #25	ENSGT00940000163493 #26	ENSGT00940000163360 #27	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #28	ENSGT00940000153378.a.a #29	ENSGT00940000154560.b #30	ENSGT00940000154560.a #31	ENSGT00940000153378.b.b #32	ENSGT00730000111801 #35	ENSGT00940000161506 #34	ENSGT00940000159966.A #33	ENSGT00940000159966.B ##33	ENSGT00520000061332 #37
Hystricomorpha	ANCESTRAL SPECIES	12	ENSGT00940000154025.a #8	ENSGT00390000010763 #9	ENSGT00940000159342 #10	ENSGT00940000159758 #11	ENSGT00940000154427.B #12	ENSGT00940000164153 #13	ENSGT00940000163183 #14	ENSGT00390000004681 #15	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT01100000266998	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a #24	ENSGT00940000162943 #25	ENSGT00940000163493 #26	ENSGT00940000163360 #27	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #28	ENSGT00940000153378.a.a #29	ENSGT00940000154560.b #30	ENSGT00940000154560.a #31	ENSGT00940000153378.b.b #32	ENSGT00730000111801 #35	ENSGT00940000161506.m.a #34	ENSGT00940000159966.A #33	ENSGT00940000159966.B ##33	ENSGT00520000061332 #37
Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT00940000155594 #7	ENSGT00940000154025.a #8	ENSGT00390000010763 #9	ENSGT00940000159342 #10	ENSGT00940000159758 #11	ENSGT00940000154427.B #12	ENSGT00940000164153 #13	ENSGT00940000163183 #14	ENSGT00390000004681 #15	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a #24	ENSGT00940000162943 #25	ENSGT00940000163493 #26	ENSGT00940000163360 #27	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #28	ENSGT00940000153378.a.a #29	ENSGT00940000154560.b #30	ENSGT00940000154560.a #31	ENSGT00940000153378.b.b.q.b #32	ENSGT00940000159966.A #33	ENSGT00940000161506.m.a #34	ENSGT00730000111801 #35	ENSGT00940000153378.b.b.q.a #36	ENSGT00520000061332 #37
Hystricomorpha_b	ANCESTRAL SPECIES	27	ENSGT00940000155594 #7	ENSGT00940000154025.a #8	ENSGT00390000010763 #9	ENSGT00940000159342 #10	ENSGT00940000159758 #11	ENSGT00940000154427.B #12	ENSGT00940000164153 #13	ENSGT00940000163183 #14	ENSGT00390000004681 #15	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a #24	ENSGT00940000162943 #25	ENSGT00940000163493 #26	ENSGT00940000163360 #27	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #28	ENSGT00940000153378.a.a #29	ENSGT00940000154560.b #30	ENSGT00940000154560.a #31	ENSGT00940000153378.b.b.q.b #32	ENSGT00940000159966.A #33	ENSGT00940000161506.m.a #34	ENSGT00730000111801 #35	ENSGT00940000153378.b.b.q.a #36	ENSGT00520000061332 #37
Long-tailed chinchilla	MODERN SPECIES	161	PUF60 (ENSCLAG00000009154) #7	SCRIB (ENSCLAG00000010805) #8	IQANK1 (ENSCLAG00000013041) #9	FAM83H (ENSCLAG00000013519) #10	MAPK15 (ENSCLAG00000011011) #11	CCDC166 (ENSCLAG00000008849) #12	ENSCLAG00000011044 #13	ZNF623 (ENSCLAG00000014678) #14	GFUS (ENSCLAG00000008907) #15	PYCR3 (ENSCLAG00000010276) #16	TIGD5 (ENSCLAG00000018021) #17	ENSCLAG00000008571 #18	NAPRT (ENSCLAG00000014862) #19	MROH6 (ENSCLAG00000014422) #20	GSDMD (ENSCLAG00000009094) #21	ZC3H3 (ENSCLAG00000009999) #22	MAFA (ENSCLAG00000018099) #23	RHPN1 (ENSCLAG00000012218) #24	TOP1MT (ENSCLAG00000013877) #25	ZNF696 (ENSCLAG00000012633) #26	GLI4 (ENSCLAG00000012388) #27	ZFP41 (ENSCLAG00000009799) #28	GPIHBP1 (ENSCLAG00000008784) #29	LY6H (ENSCLAG00000008479) #30	LY6L (ENSCLAG00000010712) #31	ENSCLAG00000013664 #32	GML (ENSCLAG00000010524) #33	ENSCLAG00000013354 #34	ENSCLAG00000012302 #35	ENSCLAG00000014000 #36	ENSCLAG00000015365 #37
Degu	MODERN SPECIES	145	ENSODEG00000014024 #7	SCRIB (ENSODEG00000013795) #8	IQANK1 (ENSODEG00000013696) #9	FAM83H (ENSODEG00000014158) #10	MAPK15 (ENSODEG00000014999) #11	CCDC166 (ENSODEG00000014189) #12	ENSODEG00000014226 #13	ENSODEG00000013485	GFUS (ENSODEG00000014465) #15	PYCR3 (ENSODEG00000015350) #16	TIGD5 (ENSODEG00000013505) #17	ENSODEG00000013624 #18	NAPRT (ENSODEG00000014091) #19	MROH6 (ENSODEG00000013415) #20	GSDMD (ENSODEG00000014859) #21	ZC3H3 (ENSODEG00000014239) #22	MAFA (ENSODEG00000020376) #23	RHPN1 (ENSODEG00000013521) #24	TOP1MT (ENSODEG00000013839) #25	ENSODEG00000014235	ZFP41 (ENSODEG00000020283) #28	GPIHBP1 (ENSODEG00000014571) #29	LY6H (ENSODEG00000013867) #30	ENSODEG00000020306	LY6E (ENSODEG00000014194) ##29	ENSODEG00000014405	ENSODEG00000013937 #35	ENSODEG00000014076 ##34	ENSODEG00000014283 #37	LY6D (ENSODEG00000013766)	ENSODEG00000014168 #29
Guinea pig	MODERN SPECIES	95	PUF60 (ENSCPOG00000014613) #7	SCRIB (ENSCPOG00000014605) #8	IQANK1 (ENSCPOG00000020895) #9	FAM83H (ENSCPOG00000013323) #10	MAPK15 (ENSCPOG00000013318) #11	CCDC166 (ENSCPOG00000024168) #12	ENSCPOG00000032341 #13	ZNF623 (ENSCPOG00000009794) #14	GFUS (ENSCPOG00000000051) #15	PYCR3 (ENSCPOG00000039640) #16	TIGD5 (ENSCPOG00000039267) #17	EEF1D (ENSCPOG00000000048) #18	NAPRT (ENSCPOG00000000047) #19	MROH6 (ENSCPOG00000000046) #20	GSDMD (ENSCPOG00000000044) #21	ZC3H3 (ENSCPOG00000006248) #22	MAFA (ENSCPOG00000021977) #23	RHPN1 (ENSCPOG00000006972) #24	TOP1MT (ENSCPOG00000022690) #25	GLI4 (ENSCPOG00000040511) #27	ZFP41 (ENSCPOG00000040680) #28	GPIHBP1 (ENSCPOG00000040336) #29	LY6H (ENSCPOG00000037598) #30	ENSCPOG00000033154	ENSCPOG00000013558 ##34	ENSCPOG00000024809 #34	LY6E (ENSCPOG00000034097) #36	ENSCPOG00000034677	ENSCPOG00000014091	ENSCPOG00000039291	ENSCPOG00000024688
Naked mole-rat female	MODERN SPECIES	1	PUF60 (ENSHGLG00000006111) #7	FAM83H (ENSHGLG00000016899) #10	MAPK15 (ENSHGLG00000044970) #11	ENSHGLG00000015050 #12	ENSHGLG00000039178 #12	ENSHGLG00000039255 #13	ZNF623 (ENSHGLG00000044862) #14	GFUS (ENSHGLG00000009464) #15	ENSHGLG00000006778 #16	TIGD5 (ENSHGLG00000007775) #17	ENSHGLG00000038349	ENSHGLG00000043389 #18	NAPRT (ENSHGLG00000013733) #19	MROH6 (ENSHGLG00000018619) #20	GSDMD (ENSHGLG00000008317) #21	ZC3H3 (ENSHGLG00000011234) #22	MAFA (ENSHGLG00000020639) #23	RHPN1 (ENSHGLG00000007767) #24	GLI4 (ENSHGLG00000036792) #27	ZFP41 (ENSHGLG00000005516) #28	GPIHBP1 (ENSHGLG00000043232) #29	ENSHGLG00000032185 #30	ENSHGLG00000045037 #31	ENSHGLG00000004712	ENSHGLG00000006100	ENSHGLG00000042259 #32	ENSHGLG00000036086 #35	ENSHGLG00000016698 #34	ENSHGLG00000007913 #34	ENSHGLG00000042859 #33	ENSHGLG00000050763 ##33
Sciuridae	ANCESTRAL SPECIES	17	ENSGT00940000155594 #7	ENSGT00940000154025.a #8	ENSGT00390000010763 #9	ENSGT00940000159342 #10	ENSGT00940000159758 #11	ENSGT00940000154427.B #12	ENSGT00940000164153 #13	ENSGT00940000163183 #14	ENSGT00390000004681 #15	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a #24	ENSGT00940000163493 #26	ENSGT00940000163360 #27	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #28	ENSGT00940000153378.a.a #29	ENSGT00940000154560.b #30	ENSGT00940000154560.a #31	ENSGT00940000153378.b.b #32	ENSGT00940000159966.A #33	ENSGT00940000161506 #34	ENSGT00520000061332 #37	ENSGT00730000111514	ENSGT00730000111571	ENSGT00940000162197
Marmotini	ANCESTRAL SPECIES	10	ENSGT00940000155594 #7	ENSGT00940000154025.a #8	ENSGT00390000010763 #9	ENSGT00940000159342 #10	ENSGT00940000159758 #11	ENSGT00940000154427.B #12	ENSGT00940000164153 #13	ENSGT00940000163183 #14	ENSGT00390000004681 #15	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a #24	ENSGT00940000163493 #26	ENSGT00940000163360 #27	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #28	ENSGT00940000153378.a.a #29	ENSGT00940000154560.b #30	ENSGT00940000154560.a #31	ENSGT00940000153378.b.b #32	ENSGT00940000159966.A #33	ENSGT00940000161506 #34	ENSGT00520000061332 #37	ENSGT00730000111514	ENSGT00730000111571	ENSGT00940000162197
Marmotini_b	ANCESTRAL SPECIES	6	ENSGT00940000155594 #7	ENSGT00940000154025.a #8	ENSGT00390000010763 #9	ENSGT00940000159342 #10	ENSGT00940000159758 #11	ENSGT00940000154427.B #12	ENSGT00940000164153 #13	ENSGT00940000163183 #14	ENSGT00390000004681 #15	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a #24	ENSGT00940000163493 #26	ENSGT00940000163360 #27	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #28	ENSGT00940000153378.a.a #29	ENSGT00940000154560.b #30	ENSGT00940000153378.b.b #32	ENSGT00940000159966.A #33	ENSGT00940000161506 #34	ENSGT00520000061332 #37	ENSGT00730000111514	ENSGT00730000111571	ENSGT00940000162197	ENSGT00940000162933
Arctic ground squirrel	MODERN SPECIES	436	NRBP2 (ENSUPAG00010023491)	PUF60 (ENSUPAG00010023489) #7	IQANK1 (ENSUPAG00010023470) #9	FAM83H (ENSUPAG00010023469) #10	MAPK15 (ENSUPAG00010023467) #11	ENSUPAG00010023466 #12	ENSUPAG00010023465 #13	ZNF623 (ENSUPAG00010023464) #14	GFUS (ENSUPAG00010023461) #15	PYCR3 (ENSUPAG00010023460) #16	TIGD5 (ENSUPAG00010023459) #17	EEF1D (ENSUPAG00010023458) #18	NAPRT (ENSUPAG00010023457) #19	MROH6 (ENSUPAG00010023456) #20	GSDMD (ENSUPAG00010023455) #21	ZC3H3 (ENSUPAG00010023454) #22	MAFA (ENSUPAG00010023453) #23	RHPN1 (ENSUPAG00010023452) #24	ZNF696 (ENSUPAG00010023451) #26	GLI4 (ENSUPAG00010023449) #27	ZFP41 (ENSUPAG00010023448) #28	ENSUPAG00010023446 #29	LY6H (ENSUPAG00010023445) #30	LY6E (ENSUPAG00010023443) #32
Squirrel	MODERN SPECIES	70	ENSSTOG00000031359	OPLAH (ENSSTOG00000002587)	ENSSTOG00000026841	ENSSTOG00000025838	PLEC (ENSSTOG00000023061)	NRBP2 (ENSSTOG00000023485)	PUF60 (ENSSTOG00000025037) #7	SCRIB (ENSSTOG00000003571) #8	FAM83H (ENSSTOG00000020789) #10	MAPK15 (ENSSTOG00000024211) #11	GFUS (ENSSTOG00000003700) #15	PYCR3 (ENSSTOG00000003681) #16	EEF1D (ENSSTOG00000000025) #18	NAPRT (ENSSTOG00000000024) #19	GSDMD (ENSSTOG00000025332) #21	ZC3H3 (ENSSTOG00000004358) #22	MAFA (ENSSTOG00000026889) #23	RHPN1 (ENSSTOG00000020790) #24	ZNF696 (ENSSTOG00000033270) #26	GLI4 (ENSSTOG00000023930) #27	ZFP41 (ENSSTOG00000022550) #28	LY6H (ENSSTOG00000001914) #30	ENSSTOG00000001472 #34	LY6D (ENSSTOG00000016531)	ENSSTOG00000022520	THEM6 (ENSSTOG00000022145)	PSCA (ENSSTOG00000008313) ##29	JRK (ENSSTOG00000021183)	ARC (ENSSTOG00000005258)	ADGRB1 (ENSSTOG00000027177)	ENSSTOG00000024244
Alpin marmot	MODERN SPECIES	18	PARP10 (ENSMMMG00000007089)	PLEC (ENSMMMG00000006621)	ENSMMMG00000006594	NRBP2 (ENSMMMG00000006581)	PUF60 (ENSMMMG00000006516) #7	ENSMMMG00000006425	ENSMMMG00000006411 #12	ENSMMMG00000006401 #13	ZNF623 (ENSMMMG00000006391) #14	GFUS (ENSMMMG00000006361) #15	PYCR3 (ENSMMMG00000006350) #16	EEF1D (ENSMMMG00000006276) #18	NAPRT (ENSMMMG00000006266) #19	MROH6 (ENSMMMG00000006251) #20	GSDMD (ENSMMMG00000006237) #21	ZC3H3 (ENSMMMG00000006034) #22	RHPN1 (ENSMMMG00000006003) #24	ZNF696 (ENSMMMG00000005990) #26	GLI4 (ENSMMMG00000006001) #27	ZFP41 (ENSMMMG00000005975) #28	ENSMMMG00000005968 #29	LY6H (ENSMMMG00000005953) #30	LY6L (ENSMMMG00000005942) #31	ENSMMMG00000005911	LY6E (ENSMMMG00000005897) #32	ENSMMMG00000005886	ENSMMMG00000005875 #33	ENSMMMG00000005862 #34	ENSMMMG00000005852 #37	LY6D (ENSMMMG00000005846)	ENSMMMG00000005842
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005000218	NRBP2 (ENSSVLG00005000166)	PUF60 (ENSSVLG00005024610) #7	ENSSVLG00005024516	FAM83H (ENSSVLG00005024372) #10	MAPK15 (ENSSVLG00005024296) #11	ENSSVLG00005024256 #12	ENSSVLG00005024227 #13	ZNF623 (ENSSVLG00005024218) #14	PYCR3 (ENSSVLG00005024114) #16	TIGD5 (ENSSVLG00005024082) #17	EEF1D (ENSSVLG00005023988) #18	NAPRT (ENSSVLG00005023946) #19	MROH6 (ENSSVLG00005023860) #20	GSDMD (ENSSVLG00005023840) #21	ZC3H3 (ENSSVLG00005023813) #22	MAFA (ENSSVLG00005023798) #23	GLI4 (ENSSVLG00005023630) #27	ENSSVLG00005023618 #28	LY6H (ENSSVLG00005023525) #30	LY6E (ENSSVLG00005023441) #32	ENSSVLG00005023389 #33	ENSSVLG00005023320	ENSSVLG00005023219	LY6D (ENSSVLG00005023172)	LYNX1 (ENSSVLG00005023135)	LYPD2 (ENSSVLG00005023079)	SLURP1 (ENSSVLG00005023055)	THEM6 (ENSSVLG00005023036)	PSCA (ENSSVLG00005023011) ##29	JRK (ENSSVLG00005022992)