Rodentia_A	ANCESTRAL SPECIES	18	ENSGT00940000154025.a	ENSGT00390000010763	ENSGT00940000159342 #11	ENSGT00940000159758 #12	ENSGT00940000154427.B #13	ENSGT00940000164153 #14	ENSGT00940000163183 #15	ENSGT00390000004681	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT01100000266998	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a	ENSGT00940000162943	ENSGT00940000163493	ENSGT00940000163360 #24	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #25	ENSGT00940000153378.a.a ##27	ENSGT00940000154560.b #26	ENSGT00940000154560.a ##26	ENSGT00940000153378.b.b #27	ENSGT00730000111801	ENSGT00940000161506	ENSGT00940000159966.A #28	ENSGT00940000159966.B ##28	ENSGT00520000061332
Sciuridae	ANCESTRAL SPECIES	17	ENSGT00940000155594 #9	ENSGT00940000154025.a	ENSGT00390000010763	ENSGT00940000159342 #11	ENSGT00940000159758 #12	ENSGT00940000154427.B #13	ENSGT00940000164153 #14	ENSGT00940000163183 #15	ENSGT00390000004681	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a	ENSGT00940000163493	ENSGT00940000163360 #24	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #25	ENSGT00940000153378.a.a ##27	ENSGT00940000154560.b #26	ENSGT00940000154560.a ##26	ENSGT00940000153378.b.b #27	ENSGT00940000159966.A #28	ENSGT00940000161506	ENSGT00520000061332	ENSGT00730000111514 #31	ENSGT00730000111571 #32	ENSGT00940000162197 #33
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005000218 #7	NRBP2 (ENSSVLG00005000166) #8	PUF60 (ENSSVLG00005024610) #9	ENSSVLG00005024516 #10	FAM83H (ENSSVLG00005024372) #11	MAPK15 (ENSSVLG00005024296) #12	ENSSVLG00005024256 #13	ENSSVLG00005024227 #14	ZNF623 (ENSSVLG00005024218) #15	PYCR3 (ENSSVLG00005024114) #16	TIGD5 (ENSSVLG00005024082) #17	EEF1D (ENSSVLG00005023988) #18	NAPRT (ENSSVLG00005023946) #19	MROH6 (ENSSVLG00005023860) #20	GSDMD (ENSSVLG00005023840) #21	ZC3H3 (ENSSVLG00005023813) #22	MAFA (ENSSVLG00005023798) #23	GLI4 (ENSSVLG00005023630) #24	ENSSVLG00005023618 #25	LY6H (ENSSVLG00005023525) #26	LY6E (ENSSVLG00005023441) #27	ENSSVLG00005023389 #28	ENSSVLG00005023320 #29	ENSSVLG00005023219 #30	LY6D (ENSSVLG00005023172) #31	LYNX1 (ENSSVLG00005023135) #32	LYPD2 (ENSSVLG00005023079) #33	SLURP1 (ENSSVLG00005023055) #34	THEM6 (ENSSVLG00005023036) #35	PSCA (ENSSVLG00005023011) #36	JRK (ENSSVLG00005022992) #37
Marmotini	ANCESTRAL SPECIES	10	ENSGT00940000155594 #9	ENSGT00940000154025.a	ENSGT00390000010763	ENSGT00940000159342 #11	ENSGT00940000159758 #12	ENSGT00940000154427.B #13	ENSGT00940000164153 #14	ENSGT00940000163183 #15	ENSGT00390000004681	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a	ENSGT00940000163493	ENSGT00940000163360 #24	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #25	ENSGT00940000153378.a.a ##27	ENSGT00940000154560.b #26	ENSGT00940000154560.a ##26	ENSGT00940000153378.b.b #27	ENSGT00940000159966.A #28	ENSGT00940000161506	ENSGT00520000061332	ENSGT00730000111514 #31	ENSGT00730000111571 #32	ENSGT00940000162197 #33
Marmotini_b	ANCESTRAL SPECIES	6	ENSGT00940000155594 #9	ENSGT00940000154025.a	ENSGT00390000010763	ENSGT00940000159342 #11	ENSGT00940000159758 #12	ENSGT00940000154427.B #13	ENSGT00940000164153 #14	ENSGT00940000163183 #15	ENSGT00390000004681	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a	ENSGT00940000163493	ENSGT00940000163360 #24	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #25	ENSGT00940000153378.a.a ##27	ENSGT00940000154560.b #26	ENSGT00940000153378.b.b #27	ENSGT00940000159966.A #28	ENSGT00940000161506	ENSGT00520000061332	ENSGT00730000111514 #31	ENSGT00730000111571 #32	ENSGT00940000162197 #33	ENSGT00940000162933 #34
Arctic ground squirrel	MODERN SPECIES	436	NRBP2 (ENSUPAG00010023491) #8	PUF60 (ENSUPAG00010023489) #9	IQANK1 (ENSUPAG00010023470)	FAM83H (ENSUPAG00010023469) #11	MAPK15 (ENSUPAG00010023467) #12	ENSUPAG00010023466 #13	ENSUPAG00010023465 #14	ZNF623 (ENSUPAG00010023464) #15	GFUS (ENSUPAG00010023461)	PYCR3 (ENSUPAG00010023460) #16	TIGD5 (ENSUPAG00010023459) #17	EEF1D (ENSUPAG00010023458) #18	NAPRT (ENSUPAG00010023457) #19	MROH6 (ENSUPAG00010023456) #20	GSDMD (ENSUPAG00010023455) #21	ZC3H3 (ENSUPAG00010023454) #22	MAFA (ENSUPAG00010023453) #23	RHPN1 (ENSUPAG00010023452)	ZNF696 (ENSUPAG00010023451)	GLI4 (ENSUPAG00010023449) #24	ZFP41 (ENSUPAG00010023448) #25	ENSUPAG00010023446 ##27	LY6H (ENSUPAG00010023445) #26	LY6E (ENSUPAG00010023443) #27
Squirrel	MODERN SPECIES	70	ENSSTOG00000031359	OPLAH (ENSSTOG00000002587)	ENSSTOG00000026841	ENSSTOG00000025838	PLEC (ENSSTOG00000023061)	NRBP2 (ENSSTOG00000023485) #8	PUF60 (ENSSTOG00000025037) #9	SCRIB (ENSSTOG00000003571)	FAM83H (ENSSTOG00000020789) #11	MAPK15 (ENSSTOG00000024211) #12	GFUS (ENSSTOG00000003700)	PYCR3 (ENSSTOG00000003681) #16	EEF1D (ENSSTOG00000000025) #18	NAPRT (ENSSTOG00000000024) #19	GSDMD (ENSSTOG00000025332) #21	ZC3H3 (ENSSTOG00000004358) #22	MAFA (ENSSTOG00000026889) #23	RHPN1 (ENSSTOG00000020790)	ZNF696 (ENSSTOG00000033270)	GLI4 (ENSSTOG00000023930) #24	ZFP41 (ENSSTOG00000022550) #25	LY6H (ENSSTOG00000001914) #26	ENSSTOG00000001472	LY6D (ENSSTOG00000016531) #31	ENSSTOG00000022520 #32	THEM6 (ENSSTOG00000022145) #35	PSCA (ENSSTOG00000008313) #36	JRK (ENSSTOG00000021183) #37	ARC (ENSSTOG00000005258)	ADGRB1 (ENSSTOG00000027177)	ENSSTOG00000024244
Alpin marmot	MODERN SPECIES	18	PARP10 (ENSMMMG00000007089)	PLEC (ENSMMMG00000006621)	ENSMMMG00000006594 #7	NRBP2 (ENSMMMG00000006581) #8	PUF60 (ENSMMMG00000006516) #9	ENSMMMG00000006425	ENSMMMG00000006411 #13	ENSMMMG00000006401 #14	ZNF623 (ENSMMMG00000006391) #15	GFUS (ENSMMMG00000006361)	PYCR3 (ENSMMMG00000006350) #16	EEF1D (ENSMMMG00000006276) #18	NAPRT (ENSMMMG00000006266) #19	MROH6 (ENSMMMG00000006251) #20	GSDMD (ENSMMMG00000006237) #21	ZC3H3 (ENSMMMG00000006034) #22	RHPN1 (ENSMMMG00000006003)	ZNF696 (ENSMMMG00000005990)	GLI4 (ENSMMMG00000006001) #24	ZFP41 (ENSMMMG00000005975) #25	ENSMMMG00000005968 ##27	LY6H (ENSMMMG00000005953) #26	LY6L (ENSMMMG00000005942) ##26	ENSMMMG00000005911	LY6E (ENSMMMG00000005897) #27	ENSMMMG00000005886	ENSMMMG00000005875 #28	ENSMMMG00000005862	ENSMMMG00000005852	LY6D (ENSMMMG00000005846) #31	ENSMMMG00000005842 #32
Hystricomorpha	ANCESTRAL SPECIES	12	ENSGT00940000154025.a	ENSGT00390000010763	ENSGT00940000159342 #11	ENSGT00940000159758 #12	ENSGT00940000154427.B #13	ENSGT00940000164153 #14	ENSGT00940000163183 #15	ENSGT00390000004681	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT01100000266998	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a	ENSGT00940000162943	ENSGT00940000163493	ENSGT00940000163360 #24	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #25	ENSGT00940000153378.a.a ##27	ENSGT00940000154560.b #26	ENSGT00940000154560.a ##26	ENSGT00940000153378.b.b #27	ENSGT00730000111801	ENSGT00940000161506.m.a	ENSGT00940000159966.A #28	ENSGT00940000159966.B ##28	ENSGT00520000061332
Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT00940000155594 #9	ENSGT00940000154025.a	ENSGT00390000010763	ENSGT00940000159342 #11	ENSGT00940000159758 #12	ENSGT00940000154427.B #13	ENSGT00940000164153 #14	ENSGT00940000163183 #15	ENSGT00390000004681	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a	ENSGT00940000162943	ENSGT00940000163493	ENSGT00940000163360 #24	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #25	ENSGT00940000153378.a.a ##27	ENSGT00940000154560.b #26	ENSGT00940000154560.a ##26	ENSGT00940000153378.b.b.q.b #27	ENSGT00940000159966.A #28	ENSGT00940000161506.m.a	ENSGT00730000111801	ENSGT00940000153378.b.b.q.a #27	ENSGT00520000061332
Hystricomorpha_b	ANCESTRAL SPECIES	27	ENSGT00940000155594 #9	ENSGT00940000154025.a	ENSGT00390000010763	ENSGT00940000159342 #11	ENSGT00940000159758 #12	ENSGT00940000154427.B #13	ENSGT00940000164153 #14	ENSGT00940000163183 #15	ENSGT00390000004681	ENSGT00950000183044.a.b #16	ENSGT00940000154420.C.i #17	ENSGT00950000183014.f.b.a.a.t #18	ENSGT00940000153456.a #19	ENSGT00940000162472 #20	ENSGT00950000183140.a.a.m.a.b #21	ENSGT00940000161068 #22	ENSGT00940000162747 #23	ENSGT00940000153837.a.a	ENSGT00940000162943	ENSGT00940000163493	ENSGT00940000163360 #24	ENSGT01100000263491.a.b.a.a.a.a.a.b.c.b #25	ENSGT00940000153378.a.a ##27	ENSGT00940000154560.b #26	ENSGT00940000154560.a ##26	ENSGT00940000153378.b.b.q.b #27	ENSGT00940000159966.A #28	ENSGT00940000161506.m.a	ENSGT00730000111801	ENSGT00940000153378.b.b.q.a #27	ENSGT00520000061332
Long-tailed chinchilla	MODERN SPECIES	161	PUF60 (ENSCLAG00000009154) #9	SCRIB (ENSCLAG00000010805)	IQANK1 (ENSCLAG00000013041)	FAM83H (ENSCLAG00000013519) #11	MAPK15 (ENSCLAG00000011011) #12	CCDC166 (ENSCLAG00000008849) #13	ENSCLAG00000011044 #14	ZNF623 (ENSCLAG00000014678) #15	GFUS (ENSCLAG00000008907)	PYCR3 (ENSCLAG00000010276) #16	TIGD5 (ENSCLAG00000018021) #17	ENSCLAG00000008571 #18	NAPRT (ENSCLAG00000014862) #19	MROH6 (ENSCLAG00000014422) #20	GSDMD (ENSCLAG00000009094) #21	ZC3H3 (ENSCLAG00000009999) #22	MAFA (ENSCLAG00000018099) #23	RHPN1 (ENSCLAG00000012218)	TOP1MT (ENSCLAG00000013877)	ZNF696 (ENSCLAG00000012633)	GLI4 (ENSCLAG00000012388) #24	ZFP41 (ENSCLAG00000009799) #25	GPIHBP1 (ENSCLAG00000008784) ##27	LY6H (ENSCLAG00000008479) #26	LY6L (ENSCLAG00000010712) ##26	ENSCLAG00000013664 #27	GML (ENSCLAG00000010524) #28	ENSCLAG00000013354	ENSCLAG00000012302	ENSCLAG00000014000 #27	ENSCLAG00000015365
Degu	MODERN SPECIES	145	ENSODEG00000014024 #9	SCRIB (ENSODEG00000013795)	IQANK1 (ENSODEG00000013696)	FAM83H (ENSODEG00000014158) #11	MAPK15 (ENSODEG00000014999) #12	CCDC166 (ENSODEG00000014189) #13	ENSODEG00000014226 #14	ENSODEG00000013485	GFUS (ENSODEG00000014465)	PYCR3 (ENSODEG00000015350) #16	TIGD5 (ENSODEG00000013505) #17	ENSODEG00000013624 #18	NAPRT (ENSODEG00000014091) #19	MROH6 (ENSODEG00000013415) #20	GSDMD (ENSODEG00000014859) #21	ZC3H3 (ENSODEG00000014239) #22	MAFA (ENSODEG00000020376) #23	RHPN1 (ENSODEG00000013521)	TOP1MT (ENSODEG00000013839)	ENSODEG00000014235	ZFP41 (ENSODEG00000020283) #25	GPIHBP1 (ENSODEG00000014571) ##27	LY6H (ENSODEG00000013867) #26	ENSODEG00000020306	LY6E (ENSODEG00000014194) #27	ENSODEG00000014405	ENSODEG00000013937	ENSODEG00000014076	ENSODEG00000014283	LY6D (ENSODEG00000013766) #31	ENSODEG00000014168 ##27
Guinea pig	MODERN SPECIES	95	PUF60 (ENSCPOG00000014613) #9	SCRIB (ENSCPOG00000014605)	IQANK1 (ENSCPOG00000020895)	FAM83H (ENSCPOG00000013323) #11	MAPK15 (ENSCPOG00000013318) #12	CCDC166 (ENSCPOG00000024168) #13	ENSCPOG00000032341 #14	ZNF623 (ENSCPOG00000009794) #15	GFUS (ENSCPOG00000000051)	PYCR3 (ENSCPOG00000039640) #16	TIGD5 (ENSCPOG00000039267) #17	EEF1D (ENSCPOG00000000048) #18	NAPRT (ENSCPOG00000000047) #19	MROH6 (ENSCPOG00000000046) #20	GSDMD (ENSCPOG00000000044) #21	ZC3H3 (ENSCPOG00000006248) #22	MAFA (ENSCPOG00000021977) #23	RHPN1 (ENSCPOG00000006972)	TOP1MT (ENSCPOG00000022690)	GLI4 (ENSCPOG00000040511) #24	ZFP41 (ENSCPOG00000040680) #25	GPIHBP1 (ENSCPOG00000040336) ##27	LY6H (ENSCPOG00000037598) #26	ENSCPOG00000033154	ENSCPOG00000013558	ENSCPOG00000024809	LY6E (ENSCPOG00000034097) #27	ENSCPOG00000034677	ENSCPOG00000014091	ENSCPOG00000039291	ENSCPOG00000024688
Naked mole-rat female	MODERN SPECIES	1	PUF60 (ENSHGLG00000006111) #9	FAM83H (ENSHGLG00000016899) #11	MAPK15 (ENSHGLG00000044970) #12	ENSHGLG00000015050 #13	ENSHGLG00000039178 #13	ENSHGLG00000039255 #14	ZNF623 (ENSHGLG00000044862) #15	GFUS (ENSHGLG00000009464)	ENSHGLG00000006778 #16	TIGD5 (ENSHGLG00000007775) #17	ENSHGLG00000038349	ENSHGLG00000043389 #18	NAPRT (ENSHGLG00000013733) #19	MROH6 (ENSHGLG00000018619) #20	GSDMD (ENSHGLG00000008317) #21	ZC3H3 (ENSHGLG00000011234) #22	MAFA (ENSHGLG00000020639) #23	RHPN1 (ENSHGLG00000007767)	GLI4 (ENSHGLG00000036792) #24	ZFP41 (ENSHGLG00000005516) #25	GPIHBP1 (ENSHGLG00000043232) ##27	ENSHGLG00000032185 #26	ENSHGLG00000045037 ##26	ENSHGLG00000004712	ENSHGLG00000006100	ENSHGLG00000042259 #27	ENSHGLG00000036086	ENSHGLG00000016698	ENSHGLG00000007913	ENSHGLG00000042859 #28	ENSHGLG00000050763 ##28