Murinae	ANCESTRAL SPECIES	8	ENSGT00940000154598	ENSGT00390000015102.b	ENSGT00390000009517	ENSGT00620000087966.a #7	ENSGT01030000234534.A.c.a #8	ENSGT00910000147588	ENSGT01030000234534.A.c.b #9	ENSGT00700000106116 #10	ENSGT01020000230647 #11	ENSGT00390000006885.b.a #12	ENSGT00390000006885.b.b #13	ENSGT00550000075082 #18	ENSGT00440000039367 #19	ENSGT00940000159056 #20	ENSGT00940000156287 #21	ENSGT00940000160635 #22	ENSGT00940000154392.g.a.b.a #26	ENSGT00940000154392.g.a.b.b #32	ENSGT00940000162217 #33	ENSGT00940000160877	ENSGT00940000161977 #34	ENSGT00940000162880 #35	ENSGT00940000162010 #36	ENSGT00940000154493.a.b #37	ENSGT00940000154493.a.a ##37	ENSGT00940000164621	ENSGT00940000161611	ENSGT00940000159462	ENSGT00510000047895	ENSGT00940000155018.b	ENSGT00940000155018.a.a
Mus	ANCESTRAL SPECIES	10	ENSGT00390000015102.b	ENSGT00390000009517	ENSGT00620000087966.a #7	ENSGT01030000234534.A.c.a #8	ENSGT00910000147588	ENSGT01030000234534.A.c.b #9	ENSGT00700000106116 #10	ENSGT01020000230647 #11	ENSGT00390000006885.b.a #12	ENSGT00390000006885.b.b.d.a #13	ENSGT00550000075082 #18	ENSGT00440000039367 #19	ENSGT00900000143400	ENSGT00940000159056 #20	ENSGT00940000156287 #21	ENSGT00940000160635 #22	ENSGT00940000154392.g.a.b.a.a #26	ENSGT00940000154392.g.b.d.a.a #25	ENSGT00940000154392.g.b.c #30	ENSGT00940000162217 #33	ENSGT00940000161977 #34	ENSGT00940000162880 #35	ENSGT00940000162010 #36	ENSGT00940000154493.a.b #37	ENSGT00940000154493.a.a ##37	ENSGT00940000164621	ENSGT00940000161611	ENSGT00940000159462	ENSGT00510000047895	ENSGT00940000155018.b	ENSGT00940000155018.a.a
Mus_A	ANCESTRAL SPECIES	17	ENSGT00390000009517	ENSGT00620000087966.a #7	ENSGT01030000234534.A.c.a #8	ENSGT00910000147588	ENSGT01030000234534.A.c.b #9	ENSGT00700000106116 #10	ENSGT01020000230647 #11	ENSGT00390000006885.b.a #12	ENSGT00390000006885.b.b.d.a #13	ENSGT00550000075082 #18	ENSGT00440000039367 #19	ENSGT00900000143400	ENSGT00940000159056 #20	ENSGT00940000156287 #21	ENSGT00800000125274	ENSGT00940000160635 #22	ENSGT00940000154392.g.a.b.a.a #26	ENSGT00940000154392.g.a.b.a.b #31	ENSGT00940000154392.g.a.b.b #32	ENSGT00940000162217 #33	ENSGT00940000161977 #34	ENSGT00940000162880 #35	ENSGT00940000162010 #36	ENSGT00940000154493.a.b #37	ENSGT00940000154493.a.a ##37	ENSGT00940000164621	ENSGT00940000161611	ENSGT00940000159462	ENSGT00510000047895	ENSGT00940000155018.b	ENSGT00940000155018.a.a
Mus_B	ANCESTRAL SPECIES	17	ENSGT00390000009517	ENSGT00620000087966.a #7	ENSGT01030000234534.A.c.a #8	ENSGT00910000147588	ENSGT01030000234534.A.c.b #9	ENSGT00700000106116 #10	ENSGT01020000230647 #11	ENSGT00390000006885.b.a #12	ENSGT00390000006885.b.b.d.a #13	ENSGT00550000075082 #18	ENSGT00440000039367 #19	ENSGT00900000143400	ENSGT00940000159056 #20	ENSGT00940000156287 #21	ENSGT00800000125274	ENSGT00940000160635 #22	ENSGT00940000154392.g.a.a #23	ENSGT00940000154392.g.b.d.a.b #24	ENSGT00940000160877	ENSGT00940000154392.h.a.a.a #29	ENSGT00940000154392.g.b.c.a #30	ENSGT00940000154392.g.a.b.a.b #31	ENSGT00940000154392.g.a.b.b #32	ENSGT00940000162217 #33	ENSGT00940000161977 #34	ENSGT00940000162880 #35	ENSGT00940000162010 #36	ENSGT00940000154493.a.b #37	ENSGT00940000154493.a.a ##37	ENSGT00940000164621	ENSGT00940000161611
Mouse	MODERN SPECIES	3	Atg2b (ENSMUSG00000041341) #7	Bdkrb1 (ENSMUSG00000041347) #8	Bdkrb2 (ENSMUSG00000021070) #9	D430019H16Rik (ENSMUSG00000094910) #10	Tunar (ENSMUSG00000097929) #11	Tcl1 (ENSMUSG00000041359) #12	Tcl1b4 (ENSMUSG00000079007) #13	Tcl1b3 (ENSMUSG00000068940) #14	Tcl1b5 (ENSMUSG00000000701) #15	Tcl1b1 (ENSMUSG00000066359) #16	Tcl1b2 (ENSMUSG00000060863) #17	Glrx5 (ENSMUSG00000021102) #18	Syne3 (ENSMUSG00000054150) #19	Clmn (ENSMUSG00000021097) #20	Dicer1 (ENSMUSG00000041415) #21	Gsc (ENSMUSG00000021095) #22	Serpina3n (ENSMUSG00000021091) #23	Serpina3m (ENSMUSG00000079012) #24	Serpina3k (ENSMUSG00000058207) #25	Serpina3j (ENSMUSG00000079013) #26	Serpina3i (ENSMUSG00000079014) #27	Serpina3g (ENSMUSG00000041481) #28	Serpina3f (ENSMUSG00000066363) #29	Serpina3c (ENSMUSG00000066361) #30	Serpina3b (ENSMUSG00000066364) #31	Serpina3a (ENSMUSG00000041536) #32	Serpina5 (ENSMUSG00000041550) #33	Serpina12 (ENSMUSG00000041567) #34	Serpina9 (ENSMUSG00000058260) #35	Serpina11 (ENSMUSG00000063232) #36	Serpina1e (ENSMUSG00000072849) #37
Mus_C	ANCESTRAL SPECIES	11	ENSGT00390000015102.b	ENSGT00390000009517	ENSGT00620000087966.a #7	ENSGT01030000234534.A.c.a #8	ENSGT00910000147588	ENSGT01030000234534.A.c.b #9	ENSGT00700000106116 #10	ENSGT00390000006885.b.a #12	ENSGT00390000006885.b.b.d.a #13	ENSGT00550000075082 #18	ENSGT00440000039367 #19	ENSGT00900000143400	ENSGT00940000159056 #20	ENSGT00940000156287 #21	ENSGT00800000125274	ENSGT00940000160635 #22	ENSGT00940000154392.g.b.d.a.b #24	ENSGT00940000160877	ENSGT00940000154392.h.a.a.a #29	ENSGT00940000154392.g.b.c.a #30	ENSGT00940000154392.g.a.b.a.b #31	ENSGT00940000154392.g.a.b.b #32	ENSGT00940000162217 #33	ENSGT00940000161977 #34	ENSGT00940000162880 #35	ENSGT00940000162010 #36	ENSGT00940000154493.a.b #37	ENSGT00940000154493.a.a ##37	ENSGT00940000164621	ENSGT00940000161611	ENSGT00940000159462
spretus	MODERN SPECIES	3	Gskip (MGP_SPRETEiJ_G0018941)	Atg2b (MGP_SPRETEiJ_G0018940) #7	Bdkrb1 (MGP_SPRETEiJ_G0018939) #8	Bdkrb2 (MGP_SPRETEiJ_G0018938) #9	D430019H16Rik (MGP_SPRETEiJ_G0018937) #10	Tcl1 (MGP_SPRETEiJ_G0018936) #12	MGP_SPRETEiJ_G0018935 #13	MGP_SPRETEiJ_G0018934 #13	MGP_SPRETEiJ_G0018933 #13	Glrx5 (MGP_SPRETEiJ_G0018932) #18	Syne3 (MGP_SPRETEiJ_G0018931) #19	MGP_SPRETEiJ_G0018930	Clmn (MGP_SPRETEiJ_G0018929) #20	Dicer1 (MGP_SPRETEiJ_G0018928) #21	MGP_SPRETEiJ_G0018927	Gsc (MGP_SPRETEiJ_G0018926) #22	Serpina3n (MGP_SPRETEiJ_G0018925) #23	Serpina3m (MGP_SPRETEiJ_G0018924) #24	MGP_SPRETEiJ_G0018923	Serpina3k (MGP_SPRETEiJ_G0018922) #25	MGP_SPRETEiJ_G0018921 ##23	MGP_SPRETEiJ_G0018920 #29	MGP_SPRETEiJ_G0018919 #29	MGP_SPRETEiJ_G0018918 #29	MGP_SPRETEiJ_G0018917 #30	Serpina3b (MGP_SPRETEiJ_G0018916) #31	MGP_SPRETEiJ_G0018915 #32	Serpina5 (MGP_SPRETEiJ_G0018914) #33	Serpina12 (MGP_SPRETEiJ_G0018913) #34	Serpina9 (MGP_SPRETEiJ_G0018912) #35	Serpina11 (MGP_SPRETEiJ_G0018911) #36
Steppe mouse	MODERN SPECIES	2854									ENSMSIG00000012474 #13	ENSMSIG00000012458	Glrx5 (ENSMSIG00000012449) #18	Syne3 (ENSMSIG00000012182) #19	Clmn (ENSMSIG00000012135) #20	Dicer1 (ENSMSIG00000012054) #21	ENSMSIG00000012046	ENSMSIG00000012040 #22	ENSMSIG00000012023 ##23	ENSMSIG00000012016	Serpina3j (ENSMSIG00000011989) #26	Serpina3i (ENSMSIG00000011979) #27	ENSMSIG00000011942 ##23	ENSMSIG00000011934 #30	Serpina3b (ENSMSIG00000011927) #31	Serpina3a (ENSMSIG00000011911) #32	Serpina3m (ENSMSIG00000011868) #24	ENSMSIG00000011843
Ryukyu mouse	MODERN SPECIES	3	Gskip (MGP_CAROLIEiJ_G0018091)	Atg2b (MGP_CAROLIEiJ_G0018090) #7	Bdkrb1 (MGP_CAROLIEiJ_G0018089) #8	Bdkrb2 (MGP_CAROLIEiJ_G0018088) #9	D430019H16Rik (MGP_CAROLIEiJ_G0018087) #10	MGP_CAROLIEiJ_G0018086 #12	MGP_CAROLIEiJ_G0018085 #16	MGP_CAROLIEiJ_G0018084 #16	MGP_CAROLIEiJ_G0018083	Glrx5 (MGP_CAROLIEiJ_G0018082) #18	Syne3 (MGP_CAROLIEiJ_G0018081) #19	MGP_CAROLIEiJ_G0018080	Clmn (MGP_CAROLIEiJ_G0018079) #20	Dicer1 (MGP_CAROLIEiJ_G0018078) #21	MGP_CAROLIEiJ_G0018077	Gsc (MGP_CAROLIEiJ_G0018076) #22	Serpina3n (MGP_CAROLIEiJ_G0018075) #23	Serpina3m (MGP_CAROLIEiJ_G0018074) #24	MGP_CAROLIEiJ_G0018073 #25	MGP_CAROLIEiJ_G0018072 ##23	Serpina3b (MGP_CAROLIEiJ_G0018071) #31	Serpina3a (MGP_CAROLIEiJ_G0018070) #32	Serpina5 (MGP_CAROLIEiJ_G0018069) #33	Serpina12 (MGP_CAROLIEiJ_G0018068) #34	Serpina9 (MGP_CAROLIEiJ_G0018067) #35	Serpina11 (MGP_CAROLIEiJ_G0018066) #36	MGP_CAROLIEiJ_G0018065 #37	MGP_CAROLIEiJ_G0018064 #37	MGP_CAROLIEiJ_G0018063 #37	MGP_CAROLIEiJ_G0018062 #37	MGP_CAROLIEiJ_G0018061 #37
Shrew mouse	MODERN SPECIES	20	Papola (MGP_PahariEiJ_G0029850)	Ak7 (MGP_PahariEiJ_G0029849)	Atg2b (MGP_PahariEiJ_G0029848) #7	Bdkrb1 (MGP_PahariEiJ_G0029847) #8	Bdkrb2 (MGP_PahariEiJ_G0029846) #9	D430019H16Rik (MGP_PahariEiJ_G0029845) #10	MGP_PahariEiJ_G0029844 #12	MGP_PahariEiJ_G0029843 #17	MGP_PahariEiJ_G0029842 #13	Glrx5 (MGP_PahariEiJ_G0029841) #18	Syne3 (MGP_PahariEiJ_G0029840) #19	MGP_PahariEiJ_G0029839	Clmn (MGP_PahariEiJ_G0029838) #20	Dicer1 (MGP_PahariEiJ_G0029837) #21	MGP_PahariEiJ_G0029836	Gsc (MGP_PahariEiJ_G0029835) #22	Serpina3n (MGP_PahariEiJ_G0029834) #23	MGP_PahariEiJ_G0029833 ##23	MGP_PahariEiJ_G0029832 #25	MGP_PahariEiJ_G0029831 #30	Serpina3b (MGP_PahariEiJ_G0029830) #31	Serpina5 (MGP_PahariEiJ_G0029828) #33	Serpina12 (MGP_PahariEiJ_G0029827) #34	Serpina9 (MGP_PahariEiJ_G0029826) #35	Serpina11 (MGP_PahariEiJ_G0029825) #36	MGP_PahariEiJ_G0029824 #37	MGP_PahariEiJ_G0029823 #37	MGP_PahariEiJ_G0029822 #37	MGP_PahariEiJ_G0029821 #37	MGP_PahariEiJ_G0029820 #37	Serpina1f (MGP_PahariEiJ_G0029819) ##37
Rat	MODERN SPECIES	16	Vrk1 (ENSRNOG00000005274)	Papola (ENSRNOG00000004827)	Ak7 (ENSRNOG00000055714)	Gskip (ENSRNOG00000042427)	Atg2b (ENSRNOG00000004519) #7	Bdkrb1 (ENSRNOG00000004488) #8	ENSRNOG00000071141	Bdkrb2 (ENSRNOG00000047300) #9	Tcl1a (ENSRNOG00000025233) #12	ENSRNOG00000068484 #13	ENSRNOG00000071150	Glrx5 (ENSRNOG00000004206) #18	Syne3 (ENSRNOG00000005287) #19	Clmn (ENSRNOG00000011044) #20	Dicer1 (ENSRNOG00000010711) #21	Gsc (ENSRNOG00000010605) #22	ENSRNOG00000029253	Serpina3a (ENSRNOG00000029949) #23	Serpina3n (ENSRNOG00000010478) #24	LOC500712 (ENSRNOG00000067917)	Serpina3a (ENSRNOG00000048191) #27	LOC299277 (ENSRNOG00000037743) #26	Ipo11-ps1 (ENSRNOG00000055661)	Serpina3c (ENSRNOG00000010410) #24	Serpina3m (ENSRNOG00000009921) #24	Serpina5 (ENSRNOG00000009855) #33	Serpina4 (ENSRNOG00000009788)	Serpina12 (ENSRNOG00000042634) #34	Serpina9 (ENSRNOG00000042391) #35	Serpina11 (ENSRNOG00000011141) #36	Serpina1 (ENSRNOG00000032669) #37