Murinae	ANCESTRAL SPECIES	27	ENSGT01100000263548.a.a.b	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910 #7	ENSGT00940000155476 #8	ENSGT00940000153143.a.b.b.a.b.d.b.a.b #9	ENSGT00940000153143.a.b.b.b #17	ENSGT00940000153143.a.a.e.b #18	ENSGT00950000182882.A.b.a #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142 #23	ENSGT00940000157852 #24	ENSGT00390000002582 #25	ENSGT00940000157866 #27	ENSGT00940000157116 #28	ENSGT00940000155925 #29	ENSGT00390000014722 #30	ENSGT00550000074870.b #31	ENSGT00390000014996 #32	ENSGT00940000158294 #33	ENSGT00940000158149 #34	ENSGT00940000153498.A #35	ENSGT00530000063405.a #36	ENSGT00940000156562	ENSGT01100000263497.A
Mus	ANCESTRAL SPECIES	18	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910 #7	ENSGT00940000155476 #8	ENSGT00940000153143.a.b.b.a.b.d.b.a.b #9	ENSGT00940000153143.a.b.b.b.i ##9	ENSGT00860000135699 #10	ENSGT00950000186470 #14	ENSGT00940000168125 #15	ENSGT00940000153143.a.b.a #16	ENSGT00940000153143.a.b.b.b.j #17	ENSGT00940000153143.a.a.e.b #18	ENSGT00950000182882.A.b.a #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142 #23	ENSGT00940000157852 #24	ENSGT00390000002582 #25	ENSGT00940000157866 #27	ENSGT00940000157116 #28	ENSGT00940000155925 #29	ENSGT00390000014722 #30	ENSGT00550000074870.b #31	ENSGT00390000014996 #32	ENSGT00940000158294 #33	ENSGT00940000158149 #34	ENSGT00940000153498.A #35	ENSGT00530000063405.a #36	ENSGT00940000156562	ENSGT01100000263497.A
Mus_A	ANCESTRAL SPECIES	14	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910 #7	ENSGT00940000155476 #8	ENSGT00940000153143.a.b.b.a.b.d.b.a.b #9	ENSGT00940000153143.a.b.b.b.i ##9	ENSGT00860000135699 #10	ENSGT00950000186470 #14	ENSGT00940000168125 #15	ENSGT00940000153143.a.b.a #16	ENSGT00940000153143.a.b.b.b.j #17	ENSGT00940000153143.a.a.e.b #18	ENSGT00950000182882.A.b.a #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142 #23	ENSGT00940000157852 #24	ENSGT00390000002582 #25	ENSGT00940000157866 #27	ENSGT00940000157116 #28	ENSGT00940000155925 #29	ENSGT00390000014722 #30	ENSGT00550000074870.b #31	ENSGT00390000014996.db #32	ENSGT00940000158294 #33	ENSGT00940000158149 #34	ENSGT00940000153498.A #35	ENSGT00530000063405.a #36	ENSGT00940000156562	ENSGT01100000263497.A
Ryukyu mouse	MODERN SPECIES	4	Epdr1 (MGP_CAROLIEiJ_G0018253) #7	Stard3nl (MGP_CAROLIEiJ_G0018252) #8	Trgc4 (MGP_CAROLIEiJ_G0002118) #9	Trgj4 (MGP_CAROLIEiJ_G0002127) #10	MGP_CAROLIEiJ_G0002208 #11	MGP_CAROLIEiJ_G0002207 #12	MGP_CAROLIEiJ_G0002206 #13	Trgj3 (MGP_CAROLIEiJ_G0002126) #14	Trgv5 (MGP_CAROLIEiJ_G0002205) #15	MGP_CAROLIEiJ_G0002204 #16	Trgv4 (MGP_CAROLIEiJ_G0002203) #17	Trgv7 (MGP_CAROLIEiJ_G0002202) #18	MGP_CAROLIEiJ_G0018251 #19	Vps41 (MGP_CAROLIEiJ_G0018250) #20	Pou6f2 (MGP_CAROLIEiJ_G0018249) #21	Yae1d1 (MGP_CAROLIEiJ_G0018248) #22	Rala (MGP_CAROLIEiJ_G0018247) #23	Cdk13 (MGP_CAROLIEiJ_G0018246) #24	MGP_CAROLIEiJ_G0018245 #25	MGP_CAROLIEiJ_G0018244 #26	Sugct (MGP_CAROLIEiJ_G0018243) #27	Inhba (MGP_CAROLIEiJ_G0018242) #28	Gli3 (MGP_CAROLIEiJ_G0018241) #29	AW209491 (MGP_CAROLIEiJ_G0018240) #30	Psma2 (MGP_CAROLIEiJ_G0018239) #31	Mrpl32 (MGP_CAROLIEiJ_G0018238) #32	Hecw1 (MGP_CAROLIEiJ_G0018237) #33	Arid4b (MGP_CAROLIEiJ_G0018236) #34	Ggps1 (MGP_CAROLIEiJ_G0018235) #35	Tbce (MGP_CAROLIEiJ_G0018234) #36	MGP_CAROLIEiJ_G0018233 #37
Mus_B	ANCESTRAL SPECIES	13	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910 #7	ENSGT00940000155476 #8	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.d #9	ENSGT00860000135699 #10	ENSGT00950000186470 #14	ENSGT00940000168125 #15	ENSGT00980000200102	ENSGT00940000153143.a.b.b.b.j #17	ENSGT00940000153143.a.a.e.b #18	ENSGT00950000182882.A.b.a #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142 #23	ENSGT00940000157852 #24	ENSGT00390000002582 #25	ENSGT00940000157866 #27	ENSGT00940000157116 #28	ENSGT00940000155925 #29	ENSGT00390000014722 #30	ENSGT00550000074870.b #31	ENSGT00390000014996.db #32	ENSGT00940000158294 #33	ENSGT00940000158149 #34	ENSGT00940000153498.A #35	ENSGT00530000063405.a #36	ENSGT00940000156562	ENSGT01100000263497.A
Mouse	MODERN SPECIES	4	Trgv2 (ENSMUSG00000076754) ##9	Trgj2 (ENSMUSG00000105830)	Trgc2 (ENSMUSG00000076752) #9	Trgc3 (ENSMUSG00000091682) #9	Trgj3 (ENSMUSG00000104630) #14	Trgv3 (ENSMUSG00000076750) ##9	Trgc1 (ENSMUSG00000076749) #9	Trgj1 (ENSMUSG00000104962)	Trgv5 (ENSMUSG00000076747) #15	Trgv6 (ENSMUSG00000076746)	Trgv4 (ENSMUSG00000076745) #17	Trgv7 (ENSMUSG00000076744) #18	Amph (ENSMUSG00000021314) #19	Vps41 (ENSMUSG00000041236) #20	Pou6f2 (ENSMUSG00000009734) #21	Yae1d1 (ENSMUSG00000075054) #22	Rala (ENSMUSG00000008859) #23	Cdk13 (ENSMUSG00000041297) #24	Mplkip (ENSMUSG00000012429) #25	Sugct (ENSMUSG00000055137) #27	Inhba (ENSMUSG00000041324) #28	Gli3 (ENSMUSG00000021318) #29	AW209491 (ENSMUSG00000039182) #30	Psma2 (ENSMUSG00000015671) #31	Mrpl32 (ENSMUSG00000015672) #32	Hecw1 (ENSMUSG00000021301) #33	Arid4b (ENSMUSG00000039219) #34	Ggps1 (ENSMUSG00000021302) #35	Tbce (ENSMUSG00000039233) #36	B3galnt2 (ENSMUSG00000039242)	Gng4 (ENSMUSG00000021303)
Mus_C	ANCESTRAL SPECIES	10	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910 #7	ENSGT00940000155476 #8	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.d #9	ENSGT00860000135699 #10	ENSGT00950000186470 #14	ENSGT00940000168125 #15	ENSGT00980000200102	ENSGT00940000153143.a.b.b.b.j #17	ENSGT00940000153143.a.a.e.b #18	ENSGT00950000182882.A.b.a #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142 #23	ENSGT00940000157852 #24	ENSGT00390000002582 #25	ENSGT00940000157866 #27	ENSGT00940000157116 #28	ENSGT00940000155925 #29	ENSGT00390000014722 #30	ENSGT00550000074870.b #31	ENSGT00390000014996.db #32	ENSGT00940000158294 #33	ENSGT00940000158149 #34	ENSGT00940000153498.A #35	ENSGT00530000063405.a #36	ENSGT00940000156562	ENSGT01100000263497.A
spretus	MODERN SPECIES	4	Gpr141b (MGP_SPRETEiJ_G0019112)	Nme8 (MGP_SPRETEiJ_G0019111)	MGP_SPRETEiJ_G0019110	Epdr1 (MGP_SPRETEiJ_G0019109) #7	Stard3nl (MGP_SPRETEiJ_G0019108) #8	Trgc4 (MGP_SPRETEiJ_G0002244) #9	Trgj4 (MGP_SPRETEiJ_G0002254) #10	Trgj3 (MGP_SPRETEiJ_G0002253) #14	Trgv5 (MGP_SPRETEiJ_G0002333) #15	Trgv6 (MGP_SPRETEiJ_G0002332)	Trgv4 (MGP_SPRETEiJ_G0002331) #17	Trgv7 (MGP_SPRETEiJ_G0002330) #18	MGP_SPRETEiJ_G0019107 #19	Vps41 (MGP_SPRETEiJ_G0019106) #20	Pou6f2 (MGP_SPRETEiJ_G0019105) #21	Yae1d1 (MGP_SPRETEiJ_G0019104) #22	Rala (MGP_SPRETEiJ_G0019103) #23	Cdk13 (MGP_SPRETEiJ_G0019102) #24	MGP_SPRETEiJ_G0019101 #27	Inhba (MGP_SPRETEiJ_G0019100) #28	Gli3 (MGP_SPRETEiJ_G0019099) #29	AW209491 (MGP_SPRETEiJ_G0019098) #30	Psma2 (MGP_SPRETEiJ_G0019097) #31	Mrpl32 (MGP_SPRETEiJ_G0019096) #32	Hecw1 (MGP_SPRETEiJ_G0019095) #33	Arid4b (MGP_SPRETEiJ_G0019094) #34	MGP_SPRETEiJ_G0019093 #35	Tbce (MGP_SPRETEiJ_G0019092) #36	B3galnt2 (MGP_SPRETEiJ_G0019091)	MGP_SPRETEiJ_G0019090 ##37	Gng4 (MGP_SPRETEiJ_G0019089)
Steppe mouse	MODERN SPECIES	130													ENSMSIG00000003046 #19	Vps41 (ENSMSIG00000002761) #20	Pou6f2 (ENSMSIG00000002639) #21	Yae1d1 (ENSMSIG00000002612) #22	Rala (ENSMSIG00000002581) #23	Cdk13 (ENSMSIG00000002486) #24	ENSMSIG00000002458 #25	ENSMSIG00000002438	ENSMSIG00000002339 #27
Shrew mouse	MODERN SPECIES	7	Gpr141b (MGP_PahariEiJ_G0019306)	Nme8 (MGP_PahariEiJ_G0019305)	MGP_PahariEiJ_G0019304	Epdr1 (MGP_PahariEiJ_G0019303) #7	Stard3nl (MGP_PahariEiJ_G0019302) #8	Trgc4 (MGP_PahariEiJ_G0001956) #9	Trgj4 (MGP_PahariEiJ_G0001963) #10	Trgj3 (MGP_PahariEiJ_G0001962) #14	Trgv5 (MGP_PahariEiJ_G0002042) #15	MGP_PahariEiJ_G0002041 #16	Trgv4 (MGP_PahariEiJ_G0002040) #17	Trgv7 (MGP_PahariEiJ_G0002039) #18	MGP_PahariEiJ_G0019301 #19	Vps41 (MGP_PahariEiJ_G0019300) #20	Pou6f2 (MGP_PahariEiJ_G0019299) #21	Yae1d1 (MGP_PahariEiJ_G0019298) #22	Rala (MGP_PahariEiJ_G0019297) #23	Cdk13 (MGP_PahariEiJ_G0019296) #24	MGP_PahariEiJ_G0019295 #25	MGP_PahariEiJ_G0019294 #25	Sugct (MGP_PahariEiJ_G0019293) #27	Inhba (MGP_PahariEiJ_G0019292) #28	Gli3 (MGP_PahariEiJ_G0019291) #29	AW209491 (MGP_PahariEiJ_G0019290) #30	Psma2 (MGP_PahariEiJ_G0019289) #31	Mrpl32 (MGP_PahariEiJ_G0019288) #32	Hecw1 (MGP_PahariEiJ_G0019287) #33	Arid4b (MGP_PahariEiJ_G0019286) #34	Ggps1 (MGP_PahariEiJ_G0019285) #35	MGP_PahariEiJ_G0019284	MGP_PahariEiJ_G0019283 ##37
Rat	DUPLICATION
Rat	MODERN SPECIES	14	Tmem168 (ENSRNOG00000057290)	LOC100911252 (ENSRNOG00000062896)	ENSRNOG00000064825	Tas2r7l (ENSRNOG00000024685)	AABR07059877.1 (ENSRNOG00000039626)	Vwde (ENSRNOG00000024709)	Tmem106b (ENSRNOG00000006206)	ENSRNOG00000069963	ENSRNOG00000068666	Thsd7a (ENSRNOG00000030151)	Phf14 (ENSRNOG00000005775)	Ndufa4 (ENSRNOG00000005512)	ENSRNOG00000066267	LOC680964 (ENSRNOG00000047566)	ENSRNOG00000065391	LOC500028 (ENSRNOG00000008962) #22	Rps4x-ps9 (ENSRNOG00000029574)	Nxph1 (ENSRNOG00000008939)	Ica1 (ENSRNOG00000008628)	Glcci1 (ENSRNOG00000008524)	Rpa3 (ENSRNOG00000008309)	Mios (ENSRNOG00000007924)	Col28a1 (ENSRNOG00000033618)	C1galt1 (ENSRNOG00000007804)	Polr1d-ps1 (ENSRNOG00000065557)	Asns (ENSRNOG00000007546)	Sdhaf3 (ENSRNOG00000011283)	Dlx5 (ENSRNOG00000010905)	ENSRNOG00000068262	Dlx6 (ENSRNOG00000063630)	Sem1 (ENSRNOG00000010420)
Rat	MODERN SPECIES	8	Elmo1 (ENSRNOG00000059705)	Gpr141 (ENSRNOG00000066332)	Sfrp4 (ENSRNOG00000054957)	Nme8 (ENSRNOG00000058285)	Epdr1 (ENSRNOG00000060141)	LOC498759 (ENSRNOG00000050687)	Stard3nl (ENSRNOG00000052429) #8	ENSRNOG00000063508 #9	ENSRNOG00000066100 #12	AABR07027872.1 (ENSRNOG00000055197) ##9	ENSRNOG00000070051 #18	LOC100910792 (ENSRNOG00000059510) #19	Vps41 (ENSRNOG00000012940) #20	Pou6f2 (ENSRNOG00000013237) #21	AABR07027925.2 (ENSRNOG00000030925)	Yae1 (ENSRNOG00000013438) #22	Rala (ENSRNOG00000013454) #23	Cdk13 (ENSRNOG00000013620) #24	Mplkip (ENSRNOG00000013806) #25	Sugct (ENSRNOG00000066247) #27	Inhba (ENSRNOG00000014320) #28	Gli3 (ENSRNOG00000014395) #29	Psme1-ps1 (ENSRNOG00000061359)	Gabpb1l (ENSRNOG00000053439)	RGD1308147 (ENSRNOG00000015523) #30	Psma2 (ENSRNOG00000049920) #31	Mrpl32 (ENSRNOG00000015989) #32	Hecw1 (ENSRNOG00000016046) #33	Rbbp4-ps2 (ENSRNOG00000021292)	ENSRNOG00000064563	Arid4b (ENSRNOG00000016391) #34