Mus_A	ANCESTRAL SPECIES	14	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.b.b.i	ENSGT00860000135699	ENSGT00950000186470	ENSGT00940000168125	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.b.b.b.j	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142 #23	ENSGT00940000157852 #24	ENSGT00390000002582 #25	ENSGT00940000157866 #27	ENSGT00940000157116	ENSGT00940000155925	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996.db	ENSGT00940000158294	ENSGT00940000158149	ENSGT00940000153498.A	ENSGT00530000063405.a	ENSGT00940000156562	ENSGT01100000263497.A
Mus_B	ANCESTRAL SPECIES	13	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.d	ENSGT00860000135699	ENSGT00950000186470	ENSGT00940000168125	ENSGT00980000200102	ENSGT00940000153143.a.b.b.b.j	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142 #23	ENSGT00940000157852 #24	ENSGT00390000002582 #25	ENSGT00940000157866 #27	ENSGT00940000157116	ENSGT00940000155925	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996.db	ENSGT00940000158294	ENSGT00940000158149	ENSGT00940000153498.A	ENSGT00530000063405.a	ENSGT00940000156562	ENSGT01100000263497.A
Mus_C	ANCESTRAL SPECIES	10	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.d	ENSGT00860000135699	ENSGT00950000186470	ENSGT00940000168125	ENSGT00980000200102	ENSGT00940000153143.a.b.b.b.j	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142 #23	ENSGT00940000157852 #24	ENSGT00390000002582 #25	ENSGT00940000157866 #27	ENSGT00940000157116	ENSGT00940000155925	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996.db	ENSGT00940000158294	ENSGT00940000158149	ENSGT00940000153498.A	ENSGT00530000063405.a	ENSGT00940000156562	ENSGT01100000263497.A
Steppe mouse	MODERN SPECIES	130													ENSMSIG00000003046 #19	Vps41 (ENSMSIG00000002761) #20	Pou6f2 (ENSMSIG00000002639) #21	Yae1d1 (ENSMSIG00000002612) #22	Rala (ENSMSIG00000002581) #23	Cdk13 (ENSMSIG00000002486) #24	ENSMSIG00000002458 #25	ENSMSIG00000002438 #26	ENSMSIG00000002339 #27
spretus	MODERN SPECIES	4	Gpr141b (MGP_SPRETEiJ_G0019112)	Nme8 (MGP_SPRETEiJ_G0019111)	MGP_SPRETEiJ_G0019110	Epdr1 (MGP_SPRETEiJ_G0019109)	Stard3nl (MGP_SPRETEiJ_G0019108)	Trgc4 (MGP_SPRETEiJ_G0002244)	Trgj4 (MGP_SPRETEiJ_G0002254)	Trgj3 (MGP_SPRETEiJ_G0002253)	Trgv5 (MGP_SPRETEiJ_G0002333)	Trgv6 (MGP_SPRETEiJ_G0002332)	Trgv4 (MGP_SPRETEiJ_G0002331)	Trgv7 (MGP_SPRETEiJ_G0002330)	MGP_SPRETEiJ_G0019107 #19	Vps41 (MGP_SPRETEiJ_G0019106) #20	Pou6f2 (MGP_SPRETEiJ_G0019105) #21	Yae1d1 (MGP_SPRETEiJ_G0019104) #22	Rala (MGP_SPRETEiJ_G0019103) #23	Cdk13 (MGP_SPRETEiJ_G0019102) #24	MGP_SPRETEiJ_G0019101 #27	Inhba (MGP_SPRETEiJ_G0019100)	Gli3 (MGP_SPRETEiJ_G0019099)	AW209491 (MGP_SPRETEiJ_G0019098)	Psma2 (MGP_SPRETEiJ_G0019097)	Mrpl32 (MGP_SPRETEiJ_G0019096)	Hecw1 (MGP_SPRETEiJ_G0019095)	Arid4b (MGP_SPRETEiJ_G0019094)	MGP_SPRETEiJ_G0019093	Tbce (MGP_SPRETEiJ_G0019092)	B3galnt2 (MGP_SPRETEiJ_G0019091)	MGP_SPRETEiJ_G0019090	Gng4 (MGP_SPRETEiJ_G0019089)
Mouse	MODERN SPECIES	4	Trgv2 (ENSMUSG00000076754)	Trgj2 (ENSMUSG00000105830)	Trgc2 (ENSMUSG00000076752)	Trgc3 (ENSMUSG00000091682)	Trgj3 (ENSMUSG00000104630)	Trgv3 (ENSMUSG00000076750)	Trgc1 (ENSMUSG00000076749)	Trgj1 (ENSMUSG00000104962)	Trgv5 (ENSMUSG00000076747)	Trgv6 (ENSMUSG00000076746)	Trgv4 (ENSMUSG00000076745)	Trgv7 (ENSMUSG00000076744)	Amph (ENSMUSG00000021314) #19	Vps41 (ENSMUSG00000041236) #20	Pou6f2 (ENSMUSG00000009734) #21	Yae1d1 (ENSMUSG00000075054) #22	Rala (ENSMUSG00000008859) #23	Cdk13 (ENSMUSG00000041297) #24	Mplkip (ENSMUSG00000012429) #25	Sugct (ENSMUSG00000055137) #27	Inhba (ENSMUSG00000041324)	Gli3 (ENSMUSG00000021318)	AW209491 (ENSMUSG00000039182)	Psma2 (ENSMUSG00000015671)	Mrpl32 (ENSMUSG00000015672)	Hecw1 (ENSMUSG00000021301)	Arid4b (ENSMUSG00000039219)	Ggps1 (ENSMUSG00000021302)	Tbce (ENSMUSG00000039233)	B3galnt2 (ENSMUSG00000039242)	Gng4 (ENSMUSG00000021303)
Ryukyu mouse	MODERN SPECIES	4	Epdr1 (MGP_CAROLIEiJ_G0018253)	Stard3nl (MGP_CAROLIEiJ_G0018252)	Trgc4 (MGP_CAROLIEiJ_G0002118)	Trgj4 (MGP_CAROLIEiJ_G0002127)	MGP_CAROLIEiJ_G0002208	MGP_CAROLIEiJ_G0002207	MGP_CAROLIEiJ_G0002206	Trgj3 (MGP_CAROLIEiJ_G0002126)	Trgv5 (MGP_CAROLIEiJ_G0002205)	MGP_CAROLIEiJ_G0002204	Trgv4 (MGP_CAROLIEiJ_G0002203)	Trgv7 (MGP_CAROLIEiJ_G0002202)	MGP_CAROLIEiJ_G0018251 #19	Vps41 (MGP_CAROLIEiJ_G0018250) #20	Pou6f2 (MGP_CAROLIEiJ_G0018249) #21	Yae1d1 (MGP_CAROLIEiJ_G0018248) #22	Rala (MGP_CAROLIEiJ_G0018247) #23	Cdk13 (MGP_CAROLIEiJ_G0018246) #24	MGP_CAROLIEiJ_G0018245 #25	MGP_CAROLIEiJ_G0018244 #25	Sugct (MGP_CAROLIEiJ_G0018243) #27	Inhba (MGP_CAROLIEiJ_G0018242)	Gli3 (MGP_CAROLIEiJ_G0018241)	AW209491 (MGP_CAROLIEiJ_G0018240)	Psma2 (MGP_CAROLIEiJ_G0018239)	Mrpl32 (MGP_CAROLIEiJ_G0018238)	Hecw1 (MGP_CAROLIEiJ_G0018237)	Arid4b (MGP_CAROLIEiJ_G0018236)	Ggps1 (MGP_CAROLIEiJ_G0018235)	Tbce (MGP_CAROLIEiJ_G0018234)	MGP_CAROLIEiJ_G0018233