Otophysi	ANCESTRAL SPECIES	292											ENSGT00940000157001 #17	ENSGT00390000000626 #18	ENSGT00390000000805 #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000162556.B	ENSGT00940000159257	ENSGT00730000111180	ENSGT00390000005489	ENSGT00950000183138.a.a.b.u	ENSGT01030000234667.a.a.a.b.a ##35	ENSGT00940000160993
Characiphysae	ANCESTRAL SPECIES	17	ENSGT00940000156942	ENSGT00940000158089.b	ENSGT01080000257487 #10	ENSGT01000000214711 #11	ENSGT01030000235347	ENSGT00940000165265.g.b #12	ENSGT00950000183071.a.a.b.c.d #13	ENSGT01090000260003.a.b.b.a.a.b.a.a #14	ENSGT01090000260003.a.b.b.a.a.b.a.b.b ##14	ENSGT00950000183019.f.a.c.b #16	ENSGT00940000157001 #17	ENSGT00390000000626 #18	ENSGT00390000000805 #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.a ##24	ENSGT00940000155285.b.j.a.a ##25	ENSGT00390000015159.b.b ##26	ENSGT00940000158547.d	ENSGT00940000165754	ENSGT00940000158259.a	ENSGT00390000009194	ENSGT00940000158945.u.b	ENSGT00390000014069.a	ENSGT01030000234607.A.a.a.b	ENSGT00940000155594.c.a	ENSGT00940000160430	ENSGT00390000004989.a.b	ENSGT00940000157026
Channel catfish	MODERN SPECIES	15	cul1 (ENSIPUG00000005099) #7	ENSIPUG00000005075 #8	CNTNAP2 (ENSIPUG00000004936) #9	ccl34b.4 (ENSIPUG00000004900) #10	ccl34b.1 (ENSIPUG00000004880) #11	ek1 (ENSIPUG00000004842) #12	hs6st1b (ENSIPUG00000004826) #13	bcl2 (ENSIPUG00000004823) #14	cox4i1l (ENSIPUG00000004802) #15	prkag2a (ENSIPUG00000004673) #16	topbp1 (ENSIPUG00000004602) #17	tmem108 (ENSIPUG00000004577) #18	cdv3 (ENSIPUG00000004558) #19	vps41 (ENSIPUG00000004370) #20	pou6f2 (ENSIPUG00000004301) #21	yae1d1 (ENSIPUG00000004288) #22	ENSIPUG00000004235 #23	ankhb (ENSIPUG00000004183) #24	myca (ENSIPUG00000004157) #25	FAM49B (ENSIPUG00000004088) #26	eef1a1l3 (ENSIPUG00000004067) #27	ENSIPUG00000004056 #28	ENSIPUG00000004039 #29	ENSIPUG00000004012 #30	DNAJC13 (ENSIPUG00000003911) #31	tmx3 (ENSIPUG00000003866) #32	lztfl1 (ENSIPUG00000003801) #33	ENSIPUG00000003784 #34	CCR9 (ENSIPUG00000003778) #35	gli3 (ENSIPUG00000003729) #36	prpf4b (ENSIPUG00000003706) #37
Characiphysae_b	ANCESTRAL SPECIES	51	ENSGT00940000156942	ENSGT00940000158089.b	ENSGT01080000257487 #10	ENSGT01000000214711 #11	ENSGT01030000235347	ENSGT00940000165265.g.b #12	ENSGT00950000183071.a.a.b.c.d #13	ENSGT01090000260003.a.b.b.a.a.b.a.a #14	ENSGT01090000260003.a.b.b.a.a.b.a.b.b ##14	ENSGT00950000183019.f.a.c.b #16	ENSGT00940000157001 #17	ENSGT00390000000626 #18	ENSGT00390000000805 #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.a ##24	ENSGT00940000155285.b.j.a.a ##25	ENSGT00390000015159.b.b ##26	ENSGT00940000158547.d	ENSGT00940000165754	ENSGT00940000158259.a	ENSGT00390000009194	ENSGT00940000158945.u.b	ENSGT00390000014069.a	ENSGT01030000234607.A.a.a.b
Characoidei	ANCESTRAL SPECIES	288											ENSGT00940000157001 #17	ENSGT00390000000626 #18	ENSGT00390000000805 #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.a ##24	ENSGT00940000155285.b.j.a.a ##25	ENSGT00390000015159.b.b ##26	ENSGT00940000158547.d	ENSGT00940000165754	ENSGT00940000158259.a
Mexicana tetra	MODERN SPECIES	30										ENSAMXG00000043952	topbp1 (ENSAMXG00000002911) #17	ENSAMXG00000041605 #18	cdv3 (ENSAMXG00000002902) #19	vps41 (ENSAMXG00000002875) #20	POU6F2 (ENSAMXG00000002856) #21	otulina (ENSAMXG00000002842) #22	ENSAMXG00000002822 #23	ankha (ENSAMXG00000002808) #24	myca (ENSAMXG00000038957) #25	fam49bb (ENSAMXG00000002760) #26	eef1a1l3 (ENSAMXG00000002728) #27	ASAP1 (ENSAMXG00000002685)	ENSAMXG00000033616	chmp4c (ENSAMXG00000036220)	zfand1 (ENSAMXG00000029159)	ENSAMXG00000040383
Red-bellied piranha	MODERN SPECIES	152									cox4i1l (ENSPNAG00000009610) #15	prkag2a (ENSPNAG00000009660) #16	topbp1 (ENSPNAG00000009700) #17	ENSPNAG00000001330 #18	cdv3 (ENSPNAG00000009739) #19	vps41 (ENSPNAG00000009802) #20	POU6F2 (ENSPNAG00000009828) #21	otulina (ENSPNAG00000009837) #22	ENSPNAG00000009856 #23	ankha (ENSPNAG00000009891) #24	myca (ENSPNAG00000009900) #25	fam49bb (ENSPNAG00000001353) #26	eef1a1l3 (ENSPNAG00000009990) #27	ASAP1 (ENSPNAG00000010153)	ENSPNAG00000010181	chmp4c (ENSPNAG00000010219)	zfand1 (ENSPNAG00000010254)	ENSPNAG00000001389	ENSPNAG00000010394	cbln10 (ENSPNAG00000010416)	ENSPNAG00000010428	ENSPNAG00000010490	cbln10 (ENSPNAG00000010525)
Cyprinoidei	ANCESTRAL SPECIES	124	ENSGT00400000023815	ENSGT00390000011379	ENSGT00940000160982	ENSGT00940000156220.k	ENSGT00940000155230	ENSGT00510000049635	ENSGT00940000156098.a	ENSGT01100000263537.b.a.a.b.b	ENSGT00940000156398	ENSGT00940000156177	ENSGT00940000157001 #17	ENSGT00390000000626 #18	ENSGT00390000000805 #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000162556.B	ENSGT00940000159257	ENSGT00730000111180	ENSGT00390000005489	ENSGT00950000183138.a.a.b.u	ENSGT01030000234667.a.a.a.b.a ##35	ENSGT00940000160993
Cyprininae	ANCESTRAL SPECIES	156	ENSGT00670000098076.f	ENSGT00940000160982.y	ENSGT00940000156220.k.g	ENSGT00940000155230.ac	ENSGT00510000049635.a.b	ENSGT00940000156098.a.n	ENSGT01100000263537.b.a.a.b.b.f	ENSGT00940000156398.g	ENSGT00940000156177.a	ENSGT00940000157001.h #17	ENSGT00390000000626.d #18	ENSGT00390000000805.jb #19	ENSGT00390000000481.k #20	ENSGT00940000156175.f #21	ENSGT00960000187176	ENSGT00390000011176 #22	ENSGT00390000009802.b.e.a #23	ENSGT00390000012189.c.b.d #24	ENSGT00940000155285.b.j.a.b.a #25	ENSGT00390000015159.b.a.a.a #26	ENSGT00940000165526.b #27	ENSGT00940000158547.c.a	ENSGT00940000162556.B.a.b	ENSGT00940000159257.d	ENSGT00730000111180.k	ENSGT00390000005489.e	ENSGT00950000183138.a.a.b.u	ENSGT01030000234667.a.a.a.b.a.d ##35	ENSGT00940000160993.e	ENSGT00390000009209.o.a	ENSGT00940000155562.l.b.a #37
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	16	nanog (ENSCARG00000061980)	IPO4 (ENSCARG00000062006)	pdcd6 (ENSCARG00000051447)	DLGAP1 (ENSCARG00000051592)	tgif1 (ENSCARG00000052093)	ENSCARG00000052116	ENSCARG00000052161	ENSCARG00000052518	nphp3 (ENSCARG00000052550)	uba5 (ENSCARG00000052644)	topbp1 (ENSCARG00000053303) #17	ENSCARG00000053840 #18	cdv3 (ENSCARG00000053848) #19	vps41 (ENSCARG00000054045) #20	POU6F2 (ENSCARG00000056161) #21	otulina (ENSCARG00000056241) #22	ENSCARG00000056263 #23	ankha (ENSCARG00000056356) #24	myc (ENSCARG00000056880) #25	ENSCARG00000056898	gli3 (ENSCARG00000056913) #36	ENSCARG00000056931	ENSCARG00000056937	prpf4bb (ENSCARG00000056977) #37	PXDC1 (ENSCARG00000057584)	acad11 (ENSCARG00000057621)	ackr4b (ENSCARG00000057837) ##35	myripb (ENSCARG00000057876)	ENSCARG00000057916	ENSCARG00000057924	zfand1 (ENSCARG00000057943)
Goldfish	MODERN SPECIES	43	bmi1a (ENSCARG00000069102)	spag6 (ENSCARG00000069120)	pdia4 (ENSCARG00000069134)	ezh2 (ENSCARG00000069163)	cul1b (ENSCARG00000069205) #7	CNTNAP2 (ENSCARG00000069395) #9	tpk1 (ENSCARG00000069712)	sec61g (ENSCARG00000069727)	zgc:112332 (ENSCARG00000069732)	ENSCARG00000069744	relch (ENSCARG00000069781)	CSPP1 (ENSCARG00000069942)	ARFGEF1 (ENSCARG00000069998)	CPA6 (ENSCARG00000070106)	PREX2 (ENSCARG00000070132)	otulina (ENSCARG00000070164) #22	ENSCARG00000070163 #23	ankha (ENSCARG00000070167) #24	myca (ENSCARG00000070169) #25	fam49bb (ENSCARG00000070170) #26	ASAP1 (ENSCARG00000070188)	ENSCARG00000070203	ENSCARG00000070205	wdr37 (ENSCARG00000070215)	idi1 (ENSCARG00000070221)	slc35g2b (ENSCARG00000070223)	NCK1 (ENSCARG00000070225)	gyg1b (ENSCARG00000070229)	sugct (ENSCARG00000070232)	inhbaa (ENSCARG00000070235)	ENSCARG00000070236
Zebrafish	MODERN SPECIES	16	nphp3 (ENSDARG00000078261)	uba5 (ENSDARG00000063588)	topbp1 (ENSDARG00000059322) #17	ENSDARG00000090230 #18	cdv3 (ENSDARG00000023028) #19	vps41 (ENSDARG00000063573) #20	zgc:171977 (ENSDARG00000092885)	zgc:152652 (ENSDARG00000095281)	ENSDARG00000093216	zgc:171750 (ENSDARG00000078638)	ENSDARG00000092924	zgc:173856 (ENSDARG00000045424)	ENSDARG00000045423	POU6F2 (ENSDARG00000086362) #21	ENSDARG00000073931 #23	otulina (ENSDARG00000045422) #22	ENSDARG00000095829	ankha (ENSDARG00000071724) #24	ENSDARG00000098036	myca (ENSDARG00000045695) #25	fam49bb (ENSDARG00000045417) #26	ASAP1 (ENSDARG00000039729)	eef1a1l3 (ENSDARG00000071727) #27	ENSDARG00000090548	chmp4c (ENSDARG00000007418)	zfand1 (ENSDARG00000009178)	ENSDARG00000071735	myripb (ENSDARG00000038814)	ENSDARG00000094422	acad11 (ENSDARG00000045411)	ackr4b (ENSDARG00000040133) ##35