Euteleostomi	ANCESTRAL SPECIES	131	ENSGT00940000154913	ENSGT00940000162528	ENSGT00940000157516	ENSGT00390000006618	ENSGT00390000010672	ENSGT00940000164537	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b	ENSGT00970000195704	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00960000187176	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36
Actinopterygii	ANCESTRAL SPECIES	251								ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36
Neopterygii	ANCESTRAL SPECIES	203				ENSGT00730000111020.b.a	ENSGT00940000153725.a.b.b	ENSGT00940000158957	ENSGT00940000157305	ENSGT00390000004118	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189 #24	ENSGT00940000155285.b.j #25	ENSGT00390000015159.b #26	ENSGT00940000165526 #27	ENSGT00940000158547	ENSGT00940000156325
Osteoglossocephalai	ANCESTRAL SPECIES	58														ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189 #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b #26	ENSGT00940000158547.d	ENSGT00390000014069.a	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00940000155594.c.b
Clupeocephala	ANCESTRAL SPECIES	150														ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT01050000244890.a.b.b.d	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709	ENSGT00390000004989.a.b
Otomorpha	ANCESTRAL SPECIES	135											ENSGT00940000157001 #17	ENSGT00390000000626 #18	ENSGT00390000000805 #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945.u.a	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT01050000244890.a.b.b.d	ENSGT00940000155633.D	ENSGT00530000063834.e.a	ENSGT00530000063843.b	ENSGT00940000153694.B
Otophysi	ANCESTRAL SPECIES	292											ENSGT00940000157001 #17	ENSGT00390000000626 #18	ENSGT00390000000805 #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000162556.B	ENSGT00940000159257	ENSGT00730000111180	ENSGT00390000005489	ENSGT00950000183138.a.a.b.u	ENSGT01030000234667.a.a.a.b.a ##35	ENSGT00940000160993
Characiphysae	ANCESTRAL SPECIES	17	ENSGT00940000156942	ENSGT00940000158089.b	ENSGT01080000257487 #10	ENSGT01000000214711 #11	ENSGT01030000235347	ENSGT00940000165265.g.b #12	ENSGT00950000183071.a.a.b.c.d #13	ENSGT01090000260003.a.b.b.a.a.b.a.a #14	ENSGT01090000260003.a.b.b.a.a.b.a.b.b ##14	ENSGT00950000183019.f.a.c.b #16	ENSGT00940000157001 #17	ENSGT00390000000626 #18	ENSGT00390000000805 #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.a ##24	ENSGT00940000155285.b.j.a.a ##25	ENSGT00390000015159.b.b ##26	ENSGT00940000158547.d	ENSGT00940000165754	ENSGT00940000158259.a	ENSGT00390000009194	ENSGT00940000158945.u.b	ENSGT00390000014069.a	ENSGT01030000234607.A.a.a.b	ENSGT00940000155594.c.a	ENSGT00940000160430	ENSGT00390000004989.a.b	ENSGT00940000157026
Channel catfish	MODERN SPECIES	15	cul1 (ENSIPUG00000005099) #7	ENSIPUG00000005075 #8	CNTNAP2 (ENSIPUG00000004936) #9	ccl34b.4 (ENSIPUG00000004900) #10	ccl34b.1 (ENSIPUG00000004880) #11	ek1 (ENSIPUG00000004842) #12	hs6st1b (ENSIPUG00000004826) #13	bcl2 (ENSIPUG00000004823) #14	cox4i1l (ENSIPUG00000004802) #15	prkag2a (ENSIPUG00000004673) #16	topbp1 (ENSIPUG00000004602) #17	tmem108 (ENSIPUG00000004577) #18	cdv3 (ENSIPUG00000004558) #19	vps41 (ENSIPUG00000004370) #20	pou6f2 (ENSIPUG00000004301) #21	yae1d1 (ENSIPUG00000004288) #22	ENSIPUG00000004235 #23	ankhb (ENSIPUG00000004183) #24	myca (ENSIPUG00000004157) #25	FAM49B (ENSIPUG00000004088) #26	eef1a1l3 (ENSIPUG00000004067) #27	ENSIPUG00000004056 #28	ENSIPUG00000004039 #29	ENSIPUG00000004012 #30	DNAJC13 (ENSIPUG00000003911) #31	tmx3 (ENSIPUG00000003866) #32	lztfl1 (ENSIPUG00000003801) #33	ENSIPUG00000003784 #34	CCR9 (ENSIPUG00000003778) #35	gli3 (ENSIPUG00000003729) #36	prpf4b (ENSIPUG00000003706) #37
Characiphysae_b	ANCESTRAL SPECIES	51	ENSGT00940000156942	ENSGT00940000158089.b	ENSGT01080000257487 #10	ENSGT01000000214711 #11	ENSGT01030000235347	ENSGT00940000165265.g.b #12	ENSGT00950000183071.a.a.b.c.d #13	ENSGT01090000260003.a.b.b.a.a.b.a.a #14	ENSGT01090000260003.a.b.b.a.a.b.a.b.b ##14	ENSGT00950000183019.f.a.c.b #16	ENSGT00940000157001 #17	ENSGT00390000000626 #18	ENSGT00390000000805 #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.a ##24	ENSGT00940000155285.b.j.a.a ##25	ENSGT00390000015159.b.b ##26	ENSGT00940000158547.d	ENSGT00940000165754	ENSGT00940000158259.a	ENSGT00390000009194	ENSGT00940000158945.u.b	ENSGT00390000014069.a	ENSGT01030000234607.A.a.a.b
Characoidei	ANCESTRAL SPECIES	288											ENSGT00940000157001 #17	ENSGT00390000000626 #18	ENSGT00390000000805 #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.a ##24	ENSGT00940000155285.b.j.a.a ##25	ENSGT00390000015159.b.b ##26	ENSGT00940000158547.d	ENSGT00940000165754	ENSGT00940000158259.a
Mexicana tetra	MODERN SPECIES	30										ENSAMXG00000043952	topbp1 (ENSAMXG00000002911) #17	ENSAMXG00000041605 #18	cdv3 (ENSAMXG00000002902) #19	vps41 (ENSAMXG00000002875) #20	POU6F2 (ENSAMXG00000002856) #21	otulina (ENSAMXG00000002842) #22	ENSAMXG00000002822 #23	ankha (ENSAMXG00000002808) #24	myca (ENSAMXG00000038957) #25	fam49bb (ENSAMXG00000002760) #26	eef1a1l3 (ENSAMXG00000002728) #27	ASAP1 (ENSAMXG00000002685)	ENSAMXG00000033616	chmp4c (ENSAMXG00000036220)	zfand1 (ENSAMXG00000029159)	ENSAMXG00000040383
Red-bellied piranha	MODERN SPECIES	152									cox4i1l (ENSPNAG00000009610) #15	prkag2a (ENSPNAG00000009660) #16	topbp1 (ENSPNAG00000009700) #17	ENSPNAG00000001330 #18	cdv3 (ENSPNAG00000009739) #19	vps41 (ENSPNAG00000009802) #20	POU6F2 (ENSPNAG00000009828) #21	otulina (ENSPNAG00000009837) #22	ENSPNAG00000009856 #23	ankha (ENSPNAG00000009891) #24	myca (ENSPNAG00000009900) #25	fam49bb (ENSPNAG00000001353) #26	eef1a1l3 (ENSPNAG00000009990) #27	ASAP1 (ENSPNAG00000010153)	ENSPNAG00000010181	chmp4c (ENSPNAG00000010219)	zfand1 (ENSPNAG00000010254)	ENSPNAG00000001389	ENSPNAG00000010394	cbln10 (ENSPNAG00000010416)	ENSPNAG00000010428	ENSPNAG00000010490	cbln10 (ENSPNAG00000010525)
Cyprinoidei	ANCESTRAL SPECIES	124	ENSGT00400000023815	ENSGT00390000011379	ENSGT00940000160982	ENSGT00940000156220.k	ENSGT00940000155230	ENSGT00510000049635	ENSGT00940000156098.a	ENSGT01100000263537.b.a.a.b.b	ENSGT00940000156398	ENSGT00940000156177	ENSGT00940000157001 #17	ENSGT00390000000626 #18	ENSGT00390000000805 #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000162556.B	ENSGT00940000159257	ENSGT00730000111180	ENSGT00390000005489	ENSGT00950000183138.a.a.b.u	ENSGT01030000234667.a.a.a.b.a ##35	ENSGT00940000160993
Cyprininae	ANCESTRAL SPECIES	156	ENSGT00670000098076.f	ENSGT00940000160982.y	ENSGT00940000156220.k.g	ENSGT00940000155230.ac	ENSGT00510000049635.a.b	ENSGT00940000156098.a.n	ENSGT01100000263537.b.a.a.b.b.f	ENSGT00940000156398.g	ENSGT00940000156177.a	ENSGT00940000157001.h #17	ENSGT00390000000626.d #18	ENSGT00390000000805.jb #19	ENSGT00390000000481.k #20	ENSGT00940000156175.f #21	ENSGT00960000187176	ENSGT00390000011176 #22	ENSGT00390000009802.b.e.a #23	ENSGT00390000012189.c.b.d #24	ENSGT00940000155285.b.j.a.b.a #25	ENSGT00390000015159.b.a.a.a #26	ENSGT00940000165526.b #27	ENSGT00940000158547.c.a	ENSGT00940000162556.B.a.b	ENSGT00940000159257.d	ENSGT00730000111180.k	ENSGT00390000005489.e	ENSGT00950000183138.a.a.b.u	ENSGT01030000234667.a.a.a.b.a.d ##35	ENSGT00940000160993.e	ENSGT00390000009209.o.a	ENSGT00940000155562.l.b.a #37
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	16	nanog (ENSCARG00000061980)	IPO4 (ENSCARG00000062006)	pdcd6 (ENSCARG00000051447)	DLGAP1 (ENSCARG00000051592)	tgif1 (ENSCARG00000052093)	ENSCARG00000052116	ENSCARG00000052161	ENSCARG00000052518	nphp3 (ENSCARG00000052550)	uba5 (ENSCARG00000052644)	topbp1 (ENSCARG00000053303) #17	ENSCARG00000053840 #18	cdv3 (ENSCARG00000053848) #19	vps41 (ENSCARG00000054045) #20	POU6F2 (ENSCARG00000056161) #21	otulina (ENSCARG00000056241) #22	ENSCARG00000056263 #23	ankha (ENSCARG00000056356) #24	myc (ENSCARG00000056880) #25	ENSCARG00000056898	gli3 (ENSCARG00000056913) #36	ENSCARG00000056931	ENSCARG00000056937	prpf4bb (ENSCARG00000056977) #37	PXDC1 (ENSCARG00000057584)	acad11 (ENSCARG00000057621)	ackr4b (ENSCARG00000057837) ##35	myripb (ENSCARG00000057876)	ENSCARG00000057916	ENSCARG00000057924	zfand1 (ENSCARG00000057943)
Goldfish	MODERN SPECIES	43	bmi1a (ENSCARG00000069102)	spag6 (ENSCARG00000069120)	pdia4 (ENSCARG00000069134)	ezh2 (ENSCARG00000069163)	cul1b (ENSCARG00000069205) #7	CNTNAP2 (ENSCARG00000069395) #9	tpk1 (ENSCARG00000069712)	sec61g (ENSCARG00000069727)	zgc:112332 (ENSCARG00000069732)	ENSCARG00000069744	relch (ENSCARG00000069781)	CSPP1 (ENSCARG00000069942)	ARFGEF1 (ENSCARG00000069998)	CPA6 (ENSCARG00000070106)	PREX2 (ENSCARG00000070132)	otulina (ENSCARG00000070164) #22	ENSCARG00000070163 #23	ankha (ENSCARG00000070167) #24	myca (ENSCARG00000070169) #25	fam49bb (ENSCARG00000070170) #26	ASAP1 (ENSCARG00000070188)	ENSCARG00000070203	ENSCARG00000070205	wdr37 (ENSCARG00000070215)	idi1 (ENSCARG00000070221)	slc35g2b (ENSCARG00000070223)	NCK1 (ENSCARG00000070225)	gyg1b (ENSCARG00000070229)	sugct (ENSCARG00000070232)	inhbaa (ENSCARG00000070235)	ENSCARG00000070236
Zebrafish	MODERN SPECIES	16	nphp3 (ENSDARG00000078261)	uba5 (ENSDARG00000063588)	topbp1 (ENSDARG00000059322) #17	ENSDARG00000090230 #18	cdv3 (ENSDARG00000023028) #19	vps41 (ENSDARG00000063573) #20	zgc:171977 (ENSDARG00000092885)	zgc:152652 (ENSDARG00000095281)	ENSDARG00000093216	zgc:171750 (ENSDARG00000078638)	ENSDARG00000092924	zgc:173856 (ENSDARG00000045424)	ENSDARG00000045423	POU6F2 (ENSDARG00000086362) #21	ENSDARG00000073931 #23	otulina (ENSDARG00000045422) #22	ENSDARG00000095829	ankha (ENSDARG00000071724) #24	ENSDARG00000098036	myca (ENSDARG00000045695) #25	fam49bb (ENSDARG00000045417) #26	ASAP1 (ENSDARG00000039729)	eef1a1l3 (ENSDARG00000071727) #27	ENSDARG00000090548	chmp4c (ENSDARG00000007418)	zfand1 (ENSDARG00000009178)	ENSDARG00000071735	myripb (ENSDARG00000038814)	ENSDARG00000094422	acad11 (ENSDARG00000045411)	ackr4b (ENSDARG00000040133) ##35
Clupeiformes	ANCESTRAL SPECIES	51	ENSGT00940000160059.a.a	ENSGT00940000153458.A	ENSGT00390000007809.b	ENSGT00390000003759	ENSGT00940000159119.b.f.a	ENSGT00530000063891.cc	ENSGT00940000159935.g.b	ENSGT00580000081600.c.a	ENSGT01010000222287.B.a.b.a.n.a	ENSGT00940000155594.c.b	ENSGT00940000157001 #17	ENSGT00390000000626 #18	ENSGT00390000000805 #19	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.a ##24	ENSGT00940000155285.b.j.a.a ##25	ENSGT00940000155285.b.i ##25	ENSGT00390000015159.b.b ##26	ENSGT00940000158547.d	ENSGT00940000165754	ENSGT00940000158259.a	ENSGT00390000009194	ENSGT01050000244890.a.b.b.d	ENSGT00940000158945.u.b	ENSGT00390000014069.a	ENSGT01030000234607.A.a.a.b
Atlantic herring	MODERN SPECIES	8	dnajb6b (ENSCHAG00000008100)	ube3c (ENSCHAG00000007714)	rnf32 (ENSCHAG00000007595)	lmbr1 (ENSCHAG00000006491)	ENSCHAG00000006418	ENSCHAG00000006383	ENSCHAG00000006371	insig1 (ENSCHAG00000006341)	htr5ab (ENSCHAG00000006310)	puf60b (ENSCHAG00000005982)	topbp1 (ENSCHAG00000005054) #17	ENSCHAG00000004998 #18	cdv3 (ENSCHAG00000004983) #19	vps41 (ENSCHAG00000004342) #20	POU6F2 (ENSCHAG00000004172) #21	otulina (ENSCHAG00000004148) #22	ENSCHAG00000004091 #23	ankha (ENSCHAG00000004010) #24	B3GAT1 (ENSCHAG00000003898)	myca (ENSCHAG00000003864) #25	ENSCHAG00000003841	fam49bb (ENSCHAG00000003694) #26	eef1a1l3 (ENSCHAG00000003659) #27	ASAP1 (ENSCHAG00000002434)	ENSCHAG00000025844	ENSCHAG00000025840	PTCHD3 (ENSCHAG00000025838)	ENSCHAG00000025833	ENSCHAG00000025830	ENSCHAG00000025829	ENSCHAG00000025828 #23
Denticle herring	MODERN SPECIES	11	nom1 (ENSDCDG00000008013)	lmbr1 (ENSDCDG00000007951)	rnf32 (ENSDCDG00000007928)	shha (ENSDCDG00000007917)	ENSDCDG00000007907	ENSDCDG00000007894	en2a (ENSDCDG00000007875)	insig1 (ENSDCDG00000007862)	htr5ab (ENSDCDG00000007852)	puf60b (ENSDCDG00000005495)	topbp1 (ENSDCDG00000005062) #17	ENSDCDG00000005027 #18	cdv3 (ENSDCDG00000005023) #19	vps41 (ENSDCDG00000003293) #20	POU6F2 (ENSDCDG00000002873) #21	otulina (ENSDCDG00000002866) #22	ENSDCDG00000002865 #23	ankha (ENSDCDG00000002800) #24	myca (ENSDCDG00000002786) #25	fam49bb (ENSDCDG00000002657) #26	eef1a1l3 (ENSDCDG00000002637) #27	ASAP1 (ENSDCDG00000001919)	ENSDCDG00000001839	NFX1 (ENSDCDG00000001611)	smarcd3b (ENSDCDG00000001387)	CHPF2 (ENSDCDG00000001373)	abcf2b (ENSDCDG00000001365)	PRKDC (ENSDCDG00000001097)	garem (ENSDCDG00000001044)	ncf2 (ENSDCDG00000000975)	dph2 (ENSDCDG00000000956)
Euteleosteomorpha	ANCESTRAL SPECIES	31	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709	ENSGT00390000004989.a.b
Protacanthopterygii	ANCESTRAL SPECIES	49	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.a	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040.v	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00940000155594.c.b	ENSGT00940000154025.a	ENSGT00940000158533	ENSGT00390000000805 #19	ENSGT00390000000626 #18	ENSGT00940000157001 #17
Salmoninae	ANCESTRAL SPECIES	87						ENSGT00940000157341.h.c	ENSGT00940000159123.b.b	ENSGT00940000154185.fb	ENSGT00390000009040.v.b	ENSGT00940000166366.a	ENSGT00940000156694.e.b	ENSGT00940000154242.b.h.a	ENSGT00940000157762.l	ENSGT00390000000481.n #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b.u #23	ENSGT00390000012189.c.b.a #24	ENSGT00940000155285.b.j.a.b.i #25	ENSGT00390000015159.b.a.c #26	ENSGT00940000165526 #27	ENSGT00940000158547.c.c.b	ENSGT00940000156325.o	ENSGT00940000158945.s	ENSGT01050000244857.B.a.a	ENSGT00630000089910.t	ENSGT00400000022514.g	ENSGT00940000158259.b.g	ENSGT00400000024709.k.b	ENSGT00400000024709.l	ENSGT00390000004989.a.b
Salmoninae_a	ANCESTRAL SPECIES	35						ENSGT00940000157341.h.c	ENSGT00940000159123.b.b	ENSGT00940000154185.fb	ENSGT00390000009040.v.b	ENSGT00940000166366.a	ENSGT00940000156694.e.b	ENSGT00940000154242.b.h.a	ENSGT00940000157762.l	ENSGT00390000000481.n #20	ENSGT00940000156175.h #21	ENSGT00390000011176 #22	ENSGT00390000009802.b.u #23	ENSGT00390000012189.c.b.a #24	ENSGT00940000155285.b.j.a.b.i #25	ENSGT00390000015159.b.a.c #26	ENSGT00940000165526 #27	ENSGT00940000158547.c.c.b	ENSGT00940000156325.o	ENSGT00940000158945.s	ENSGT01050000244857.B.a.a	ENSGT00630000089910.t	ENSGT00400000022514.g	ENSGT00940000158259.b.g	ENSGT00400000024709.k.b	ENSGT00400000024709.l	ENSGT00390000004989.a.b
Salmo	ANCESTRAL SPECIES	34	ENSGT00940000155458.k	ENSGT01030000234607.A.a.a.a.c.a	ENSGT00550000074817.u.e	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.a.a	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.a.b	ENSGT00940000157341.h.c	ENSGT00940000159123.b.b	ENSGT00940000154185.fb	ENSGT00390000009040.v.b	ENSGT00940000166366.a	ENSGT00940000156694.e.b	ENSGT00940000154242.b.h.a	ENSGT00940000157762.l	ENSGT00390000000481.n #20	ENSGT00940000156175.h #21	ENSGT00390000011176 #22	ENSGT00390000009802.b.u #23	ENSGT00390000012189.c.b.a #24	ENSGT00940000155285.b.j.a.b.i #25	ENSGT00390000015159.b.a.c #26	ENSGT00940000165526 #27	ENSGT00940000158547.c.c.b	ENSGT00940000156325.o	ENSGT00940000158945.s	ENSGT01050000244857.B.a.a	ENSGT00630000089910.t	ENSGT00400000022514.g	ENSGT00940000158259.b.g	ENSGT00400000024709.k.b	ENSGT00400000024709.l	ENSGT00390000004989.a.b
Atlantic salmon	MODERN SPECIES	21	myl12.1 (ENSSSAG00000089518)	ENSSSAG00000008864	CHMP5 (ENSSSAG00000008886)	ENSSSAG00000118600	ENSSSAG00000098247	ENSSSAG00000043539	RGS20 (ENSSSAG00000008992)	lypla1 (ENSSSAG00000009036)	mrpl15 (ENSSSAG00000009177)	sox32 (ENSSSAG00000009190)	sox17 (ENSSSAG00000009196)	ENSSSAG00000009212	ENSSSAG00000116205	vps41 (ENSSSAG00000009364) #20	ENSSSAG00000086829 #21	otulina (ENSSSAG00000116071) #22	ENSSSAG00000010052 #23	ankha (ENSSSAG00000010093) #24	myca (ENSSSAG00000085432) #25	FA49B (ENSSSAG00000010145) #26	eef1a1l3 (ENSSSAG00000010223) #27	ASAP1 (ENSSSAG00000010357)	ENSSSAG00000019408	SMARCD3 (ENSSSAG00000055452)	ENSSSAG00000043047	ABCF2 (ENSSSAG00000043073)	ENSSSAG00000043845	slc4a2b (ENSSSAG00000044249)	ENSSSAG00000107452	ENSSSAG00000062948	ENSSSAG00000062970
River trout	MODERN SPECIES	36	myl12.1 (ENSSTUG00000038805)	FASTKD3 (ENSSTUG00000038790)	chmp5b (ENSSTUG00000038765)	ENSSTUG00000038752	ENSSTUG00000038665	OPRK1 (ENSSTUG00000038647)	RGS20 (ENSSTUG00000038630)	lypla1 (ENSSTUG00000038578)	mrpl15 (ENSSTUG00000038556)	sox32 (ENSSTUG00000038552)	sox17 (ENSSTUG00000038547)	ENSSTUG00000038543	ENSSTUG00000038541	vps41 (ENSSTUG00000035948) #20	POU6F2 (ENSSTUG00000035846) #21	otulina (ENSSTUG00000035835) #22	ankha (ENSSTUG00000035795) #24	ENSSTUG00000035694 #25	fam49bb (ENSSTUG00000035594) #26	eef1a1l3 (ENSSTUG00000035575) #27	ASAP1 (ENSSTUG00000034397)	NFX1 (ENSSTUG00000033623)	smarcd3b (ENSSTUG00000031852)	CHPF2 (ENSSTUG00000031785)	ABCF2 (ENSSTUG00000031241)	ENSSTUG00000031187	slc4a2b (ENSSTUG00000028981)	ENSSTUG00000028898	ENSSTUG00000028887	ENSSTUG00000028872	ENSSTUG00000028861
Oncorhynchus	ANCESTRAL SPECIES	27	ENSGT01030000234607.A.a.a.a.c.a	ENSGT00550000074817.u.f	ENSGT00550000074817.u.e	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.a.a	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.a.b	ENSGT00940000157341.h.c	ENSGT00940000159123.b.b	ENSGT00940000154185.fb	ENSGT00390000009040.v.b	ENSGT00940000166366.a	ENSGT00940000156694.e.b	ENSGT00940000154242.b.h.a	ENSGT00940000157762.l	ENSGT00390000000481.n #20	ENSGT00940000156175.h #21	ENSGT00390000011176 #22	ENSGT00390000009802.b.u #23	ENSGT00390000012189.c.b.a #24	ENSGT00940000155285.b.j.a.b.i #25	ENSGT00390000015159.b.a.c #26	ENSGT00940000165526 #27	ENSGT00940000158547.c.c.b	ENSGT00940000156325.o	ENSGT00940000158945.s	ENSGT01050000244857.B.a.a	ENSGT00630000089910.t	ENSGT00400000022514.g	ENSGT00940000158259.b.g	ENSGT00400000024709.k.b	ENSGT00400000024709.l	ENSGT00390000004989.a.a.a.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	27	ENSGT00940000154982.c.a	ENSGT00940000155458.k	ENSGT01030000234607.A.a.a.a.c.a	ENSGT00550000074817.u.f.b.a	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.a.b	ENSGT00940000157341.h.c	ENSGT00940000159123.b.b	ENSGT00940000154185.fb	ENSGT00390000009040.v.b	ENSGT00940000166366.a	ENSGT00940000156694.e.b	ENSGT00940000154242.b.h.a	ENSGT00940000157762.l	ENSGT00390000000481.n #20	ENSGT00940000156175.h #21	ENSGT00390000011176 #22	ENSGT00390000009802.b.u #23	ENSGT00390000012189.c.b.a #24	ENSGT00940000155285.b.j.a.b.i #25	ENSGT00390000015159.b.a.c #26	ENSGT00940000165526 #27	ENSGT00940000158547.c.c.b	ENSGT00940000156325.o	ENSGT00940000158945.s	ENSGT01050000244857.B.a.a	ENSGT00630000089910.t	ENSGT00400000022514.g	ENSGT00940000158259.b.g	ENSGT00400000024709.k.b	ENSGT00400000024709.l	ENSGT00390000004989.a.a.a.a.a
Coho salmon	MODERN SPECIES	2	MYOM1 (ENSOKIG00005045559)	myl12.1 (ENSOKIG00005045988)	FASTKD3 (ENSOKIG00005045995)	chmp5b (ENSOKIG00005046004)	ENSOKIG00005046017	OPRK1 (ENSOKIG00005046038)	RGS20 (ENSOKIG00005046049)	lypla1 (ENSOKIG00005046065)	mrpl15 (ENSOKIG00005046196)	sox32 (ENSOKIG00005046215)	sox17 (ENSOKIG00005046220)	ENSOKIG00005046228	ENSOKIG00005046237	vps41 (ENSOKIG00005046386) #20	POU6F2 (ENSOKIG00005047618) #21	otulina (ENSOKIG00005047627) #22	ENSOKIG00005047636 #23	ankha (ENSOKIG00005047671) #24	myca (ENSOKIG00005047871) #25	fam49bb (ENSOKIG00005047901) #26	eef1a1l3 (ENSOKIG00005047969) #27	ASAP1 (ENSOKIG00005048013)	NFX1 (ENSOKIG00005048224)	smarcd3b (ENSOKIG00005048525)	CHPF2 (ENSOKIG00005048981)	ABCF2 (ENSOKIG00005048988)	ENSOKIG00005049036	slc4a2b (ENSOKIG00005049083)	ENSOKIG00005049224	ENSOKIG00005049226	ENSOKIG00005001954
Chinook salmon	MODERN SPECIES	21	MYOM1 (ENSOTSG00005022985)	myl12.1 (ENSOTSG00005022956)	FASTKD3 (ENSOTSG00005022953)	chmp5b (ENSOTSG00005022950)	ENSOTSG00005022947	OPRK1 (ENSOTSG00005022944)	RGS20 (ENSOTSG00005022941)	lypla1 (ENSOTSG00005022894)	mrpl15 (ENSOTSG00005022893)	sox32 (ENSOTSG00005022891)	sox17 (ENSOTSG00005022889)	ENSOTSG00005022888	ENSOTSG00005022887	vps41 (ENSOTSG00005022690) #20	POU6F2 (ENSOTSG00005022681) #21	otulina (ENSOTSG00005022680) #22	ENSOTSG00005022677	ankha (ENSOTSG00005022245) #24	myca (ENSOTSG00005022243) #25	fam49bb (ENSOTSG00005022060) #26	eef1a1l3 (ENSOTSG00005022020) #27	ASAP1 (ENSOTSG00005017604)	NFX1 (ENSOTSG00005015411)	smarcd3b (ENSOTSG00005012296)	CHPF2 (ENSOTSG00005012247)	ABCF2 (ENSOTSG00005012205)	ENSOTSG00005012202	slc4a2b (ENSOTSG00005009503)	ENSOTSG00005009496	ENSOTSG00005009495	ENSOTSG00005009494
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000021110	chmp5b (ENSOMYG00000021092)	ENSOMYG00000061164	ENSOMYG00000021059	ENSOMYG00000021031	ENSOMYG00000045503	RGS20 (ENSOMYG00000021011)	lypla1 (ENSOMYG00000020976)	mrpl15 (ENSOMYG00000020961)	sox32 (ENSOMYG00000020957)	sox17 (ENSOMYG00000020953)	ENSOMYG00000068570	ENSOMYG00000020942	vps41 (ENSOMYG00000020466) #20	ENSOMYG00000020361 #21	otulina (ENSOMYG00000020350) #22	ENSOMYG00000020330 #23	ankha (ENSOMYG00000020300) #24	myc (ENSOMYG00000020276) #25	ENSOMYG00000075171	fam49bb (ENSOMYG00000020029) #26	eef1a1l3 (ENSOMYG00000019971) #27	ASAP1 (ENSOMYG00000019682)	ENSOMYG00000018575	SMARCD3 (ENSOMYG00000018283)	ENSOMYG00000018258	ABCF2 (ENSOMYG00000018102)	ENSOMYG00000018068	slc4a2b (ENSOMYG00000014427)	ENSOMYG00000014135	ENSOMYG00000014126
Huchen	MODERN SPECIES	1188														ENSHHUG00000021509 #21	ENSHHUG00000021511 #21	otulina (ENSHHUG00000021519) #22	ENSHHUG00000021526 #23	ankha (ENSHHUG00000021538) #24	myca (ENSHHUG00000021595) #25	ENSHHUG00000021606
Northern pike	MODERN SPECIES	20	ENSELUG00000008282	myl12.1 (ENSELUG00000008263)	FASTKD3 (ENSELUG00000008158)	chmp5 (ENSELUG00000008132)	ENSELUG00000008063	OPRK1 (ENSELUG00000008032)	RGS20 (ENSELUG00000027608)	lypla1 (ENSELUG00000007987)	mrpl15 (ENSELUG00000007952)	sox32 (ENSELUG00000007938)	sox17 (ENSELUG00000001475)	ENSELUG00000007911	ENSELUG00000007893	vps41 (ENSELUG00000007800) #20	POU6F2 (ENSELUG00000007640) #21	otulina (ENSELUG00000007612) #22	ENSELUG00000031249 #23	ENSELUG00000007600 #23	ankha (ENSELUG00000007584) #24	myca (ENSELUG00000007557) #25	fam49bb (ENSELUG00000007535) #26	eef1a1l3 (ENSELUG00000007495) #27	ASAP1 (ENSELUG00000007471)	NFX1 (ENSELUG00000007422)	smarcd3b (ENSELUG00000007382)	CHPF2 (ENSELUG00000007288)	ABCF2 (ENSELUG00000007264)	ENSELUG00000007220	ENSELUG00000030812	slc4a2b (ENSELUG00000007056)	ENSELUG00000006652
Acanthomorphata	ANCESTRAL SPECIES	17	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j
Euacanthomorphacea	ANCESTRAL SPECIES	16	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j
Percomorphaceae	ANCESTRAL SPECIES	28	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j
Percomorphaceae_B	ANCESTRAL SPECIES	20	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00980000199639	ENSGT00940000158259.b	ENSGT00400000024709.i
Ovalentaria	ANCESTRAL SPECIES	21	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00980000199639	ENSGT00940000158259.b	ENSGT00400000024709.i
Atherinomorphae	ANCESTRAL SPECIES	19	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00980000199639	ENSGT00940000158259.b	ENSGT00400000024709.i
Oryzias	ANCESTRAL SPECIES	18	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00940000160430
Oryzias_b	ANCESTRAL SPECIES	16	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT01000000221249
Indian medaka	MODERN SPECIES	14	LPIN2 (ENSOMEG00000002192)	MYOM1 (ENSOMEG00000002167)	ENSOMEG00000002128	chmp5b (ENSOMEG00000002103)	FASTKD3 (ENSOMEG00000002114)	OPRK1 (ENSOMEG00000002087)	RGS20 (ENSOMEG00000002080)	lypla1 (ENSOMEG00000002069)	mrpl15 (ENSOMEG00000002056)	sox32 (ENSOMEG00000002046)	sox17 (ENSOMEG00000002030)	ENSOMEG00000002024	ENSOMEG00000002012	vps41 (ENSOMEG00000001986) #20	POU6F2 (ENSOMEG00000001949) #21	otulina (ENSOMEG00000000019) #22	ENSOMEG00000000018 #23	ankha (ENSOMEG00000001910) #24	myca (ENSOMEG00000001897) #25	ENSOMEG00000001890	fam49bb (ENSOMEG00000001881) #26	eef1a1l3 (ENSOMEG00000001868) #27	ASAP1 (ENSOMEG00000001852)	ENSOMEG00000001829	ENSOMEG00000001822	NFX1 (ENSOMEG00000001814)	ENSOMEG00000001796	smarcd3b (ENSOMEG00000001784)	CHPF2 (ENSOMEG00000001763)	abcf2a (ENSOMEG00000001752)	ENSOMEG00000001734
Javanese ricefish	MODERN SPECIES	12	ADCYAP1 (ENSOJAG00000013308)	METTL4 (ENSOJAG00000013276)	EMILIN2 (ENSOJAG00000013041)	MYL12B (ENSOJAG00000012155)	FASTKD3 (ENSOJAG00000012148)	chmp5b (ENSOJAG00000012117)	ENSOJAG00000012093	RGS20 (ENSOJAG00000012088)	lypla1 (ENSOJAG00000012074)	mrpl15 (ENSOJAG00000012044)	sox32 (ENSOJAG00000012009)	sox17 (ENSOJAG00000011994)	ENSOJAG00000011966	vps41 (ENSOJAG00000011510) #20	POU6F2 (ENSOJAG00000011465) #21	otulina (ENSOJAG00000011461) #22	ENSOJAG00000011452 #23	ankha (ENSOJAG00000011407) #24	myca (ENSOJAG00000011322) #25	ENSOJAG00000011295	fam49bb (ENSOJAG00000011101) #26	eef1a1l3 (ENSOJAG00000011062) #27	ASAP1 (ENSOJAG00000010440)	NFX1 (ENSOJAG00000010141)	smarcd3b (ENSOJAG00000009827)	CHPF2 (ENSOJAG00000009760)	abcf2a (ENSOJAG00000009751)	ENSOJAG00000009694	ENSOJAG00000007873	ENSOJAG00000007863	ENSOJAG00000007822
Oryzias_a	ANCESTRAL SPECIES	16	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT00550000074817.u	ENSGT01030000234607.A.a.a.a.c	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00940000160430
Japanese Medaka HdrR	MODERN SPECIES	12	MYOM1 (ENSORLG00000011397)	ENSORLG00000011406	chmp5b (ENSORLG00000029884)	FASTKD3 (ENSORLG00000011410)	ENSORLG00000024140	lypla1 (ENSORLG00000011504)	RGS20 (ENSORLG00000011462)	mrpl15 (ENSORLG00000011523)	sox32 (ENSORLG00000011529)	sox17 (ENSORLG00000011542)	ENSORLG00000022333	ENSORLG00000030502	vps41 (ENSORLG00000011643) #20	POU6F2 (ENSORLG00000011666) #21	ENSORLG00000011672	otulina (ENSORLG00000024228) #22	ENSORLG00000011689 #23	ankha (ENSORLG00000011729) #24	myca (ENSORLG00000025592) #25	fam49bb (ENSORLG00000026369) #26	si:dkey-37o8.1 (ENSORLG00000019066) #27	ASAP1 (ENSORLG00000029861)	ENSORLG00000027942	NFX1 (ENSORLG00000026662)	smarcd3b (ENSORLG00000011768)	CHPF2 (ENSORLG00000011783)	abcf2a (ENSORLG00000011822)	ENSORLG00000027505	slc4a2b (ENSORLG00000012164)	ENSORLG00000029077	ENSORLG00000012186
Chinese medaka	MODERN SPECIES	71	EMILIN2 (ENSOSIG00000014541)	LPIN2 (ENSOSIG00000014566)	MYOM1 (ENSOSIG00000014774)	ENSOSIG00000015113	FASTKD3 (ENSOSIG00000015115)	OPRK1 (ENSOSIG00000015116)	lypla1 (ENSOSIG00000015121)	RGS20 (ENSOSIG00000015124)	mrpl15 (ENSOSIG00000015126)	sox32 (ENSOSIG00000015127)	sox17 (ENSOSIG00000015131)	ENSOSIG00000015132	ENSOSIG00000015134	ENSOSIG00000015142	POU6F2 (ENSOSIG00000016038) #21	otulina (ENSOSIG00000016039) #22	OTULIN (ENSOSIG00000016040) #23	ankha (ENSOSIG00000016043) #24	myca (ENSOSIG00000016076) #25	fam49bb (ENSOSIG00000016086) #26	ASAP1 (ENSOSIG00000016540)	NFX1 (ENSOSIG00000020368)	smarcd3b (ENSOSIG00000020499)	CHPF2 (ENSOSIG00000020619)	slc4a2b (ENSOSIG00000020668)	ENSOSIG00000021264	ENSOSIG00000021265	ENSOSIG00000021266	nrbp2b (ENSOSIG00000021289)	ENSOSIG00000021677	ENSOSIG00000021936 #18
Cyprinodontiformes	ANCESTRAL SPECIES	20	ENSGT00940000156313.d	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00980000199639	ENSGT00940000158259.b	ENSGT00400000024709.i
Cyprinodontoidei	ANCESTRAL SPECIES	27	ENSGT00940000156313.d	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00980000199639	ENSGT00940000158259.b	ENSGT00400000024709.i
Poeciliinae	ANCESTRAL SPECIES	20	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a.d	ENSGT00630000089910	ENSGT00400000022514	ENSGT00980000199639	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j
Poecilia	ANCESTRAL SPECIES	17	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a.d	ENSGT00630000089910	ENSGT00400000022514	ENSGT00980000199639	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j
NAME_6	ANCESTRAL SPECIES	169	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a.d	ENSGT00630000089910	ENSGT00400000022514	ENSGT00980000199639	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j
Sailfin molly	MODERN SPECIES	127	LPIN2 (ENSPLAG00000011751)	MYOM1 (ENSPLAG00000011827)	ENSPLAG00000011837	FASTKD3 (ENSPLAG00000011844)	chmp5b (ENSPLAG00000011864)	ENSPLAG00000011873	ENSPLAG00000011883	lypla1 (ENSPLAG00000011923)	mrpl15 (ENSPLAG00000011935)	sox32 (ENSPLAG00000011957)	sox17 (ENSPLAG00000011966)	ENSPLAG00000011975	ENSPLAG00000011985	vps41 (ENSPLAG00000012077) #20	POU6F2 (ENSPLAG00000012106) #21	otulina (ENSPLAG00000012121) #22	ENSPLAG00000012126 #23	ankha (ENSPLAG00000012155) #24	myca (ENSPLAG00000012165) #25
Amazon molly	MODERN SPECIES	486	LPIN2 (ENSPFOG00000023284)	MYOM1 (ENSPFOG00000014111)	ENSPFOG00000014089	FASTKD3 (ENSPFOG00000014081)	chmp5b (ENSPFOG00000014053)	OPRK1 (ENSPFOG00000014033)	RGS20 (ENSPFOG00000013996)	lypla1 (ENSPFOG00000013928)	mrpl15 (ENSPFOG00000013894)	sox32 (ENSPFOG00000013880)	sox17 (ENSPFOG00000013867)	ENSPFOG00000013859	ENSPFOG00000013839	vps41 (ENSPFOG00000013663) #20	POU6F2 (ENSPFOG00000013600) #21	otulina (ENSPFOG00000013581) #22	OTULIN (ENSPFOG00000013533) #23	ankha (ENSPFOG00000013437) #24	myca (ENSPFOG00000013425) #25	myca (ENSPFOG00000013399) #25	fam49bb (ENSPFOG00000013240) #26	eef1a1l3 (ENSPFOG00000013173) #27	ASAP1 (ENSPFOG00000012683)	NFX1 (ENSPFOG00000012547)	smarcd3b (ENSPFOG00000012463)	CHPF2 (ENSPFOG00000012439)	abcf2a (ENSPFOG00000012277)	ENSPFOG00000012241	ENSPFOG00000022070	slc4a2b (ENSPFOG00000012046)	ENSPFOG00000012039
Guppy	MODERN SPECIES	451	EMILIN2 (ENSPREG00000007309)	LPIN2 (ENSPREG00000007247)	MYOM1 (ENSPREG00000006914)	ENSPREG00000006845	FASTKD3 (ENSPREG00000006765)	chmp5b (ENSPREG00000006727)	ENSPREG00000006708	RGS20 (ENSPREG00000006695)	lypla1 (ENSPREG00000006672)	mrpl15 (ENSPREG00000006654)	sox32 (ENSPREG00000006621)	ENSPREG00000006602	ENSPREG00000006579	vps41 (ENSPREG00000006515) #20	POU6F2 (ENSPREG00000006479) #21	otulina (ENSPREG00000006464) #22	OTULIN (ENSPREG00000006444) #23	ankha (ENSPREG00000006429) #24	ENSPREG00000006407	myca (ENSPREG00000006368) #25	fam49bb (ENSPREG00000006320) #26	eef1a1l3 (ENSPREG00000006280) #27	ASAP1 (ENSPREG00000006220)	NFX1 (ENSPREG00000006186)	smarcd3b (ENSPREG00000006165)	CHPF2 (ENSPREG00000006154)	abcf2a (ENSPREG00000006098)	ENSPREG00000006028	slc4a2b (ENSPREG00000005968)	ENSPREG00000005941	ENSPREG00000005904
Platyfish	MODERN SPECIES	13	LPIN2 (ENSXMAG00000002157)	MYOM1 (ENSXMAG00000002124)	ENSXMAG00000002121	FASTKD3 (ENSXMAG00000002108)	chmp5b (ENSXMAG00000002110)	OPRK1 (ENSXMAG00000027112)	RGS20 (ENSXMAG00000002100)	lypla1 (ENSXMAG00000002093)	mrpl15 (ENSXMAG00000002087)	sox32 (ENSXMAG00000002086)	sox17 (ENSXMAG00000002084)	ENSXMAG00000026548	ENSXMAG00000020052	vps41 (ENSXMAG00000002050) #20	POU6F2 (ENSXMAG00000024135) #21	otulina (ENSXMAG00000021215) #22	ENSXMAG00000002031 #23	ankha (ENSXMAG00000002027) #24	myca (ENSXMAG00000002025) #25	fam49bb (ENSXMAG00000026161) #26	eef1a1l3 (ENSXMAG00000001998) #27	ASAP1 (ENSXMAG00000001975)	NFX1 (ENSXMAG00000001963)	smarcd3b (ENSXMAG00000022630)	CHPF2 (ENSXMAG00000001943)	abcf2a (ENSXMAG00000001927)	ENSXMAG00000001926	slc4a2b (ENSXMAG00000001894)	ENSXMAG00000001890	ENSXMAG00000015202	ENSXMAG00000001889
NAME_4	ANCESTRAL SPECIES	38	ENSGT00940000156313.d	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j
Mummichog	MODERN SPECIES	528	ENSFHEG00000011894	MYOM1 (ENSFHEG00000011880)	ENSFHEG00000011787	FASTKD3 (ENSFHEG00000011778)	chmp5b (ENSFHEG00000011771)	ENSFHEG00000011736	RGS20 (ENSFHEG00000011720)	lypla1 (ENSFHEG00000011700)	mrpl15 (ENSFHEG00000011673)	sox32 (ENSFHEG00000011659)	sox17 (ENSFHEG00000011615)	ENSFHEG00000011613	ENSFHEG00000011593	vps41 (ENSFHEG00000011570) #20	POU6F2 (ENSFHEG00000011516) #21	otulina (ENSFHEG00000011475) #22	ankha (ENSFHEG00000011444) #24	myca (ENSFHEG00000011396) #25
Sheepshead minnow	MODERN SPECIES	235	LPIN2 (ENSCVAG00000009298)	MYOM1 (ENSCVAG00000009377)	myl12.1 (ENSCVAG00000009384)	FASTKD3 (ENSCVAG00000009391)	chmp5b (ENSCVAG00000009424)	OPRK1 (ENSCVAG00000009440)	ENSCVAG00000009454	lypla1 (ENSCVAG00000009504)	mrpl15 (ENSCVAG00000009515)	sox32 (ENSCVAG00000009537)	sox17 (ENSCVAG00000009541)	ENSCVAG00000009546	ENSCVAG00000009558	vps41 (ENSCVAG00000009630) #20	POU6F2 (ENSCVAG00000009675) #21	otulina (ENSCVAG00000009707) #22	ENSCVAG00000009719 #23	ankha (ENSCVAG00000009767) #24	myca (ENSCVAG00000009784) #25	fam49bb (ENSCVAG00000009820) #26	eef1a1l3 (ENSCVAG00000009828) #27	ASAP1 (ENSCVAG00000010016)	NFX1 (ENSCVAG00000010039)	smarcd3b (ENSCVAG00000010125)	CHPF2 (ENSCVAG00000010130)	abcf2a (ENSCVAG00000010164)	ENSCVAG00000010217
Aplocheiloidei	ANCESTRAL SPECIES	18	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00390000004989.a.b
Turquoise killifish	MODERN SPECIES	1617	MYL12.2 (ENSNFUG00015006405)	FASTKD3 (ENSNFUG00015006421)	CHMP5B (ENSNFUG00015006435)	OPRK1 (ENSNFUG00015006448)	RGS20 (ENSNFUG00015006452)	lypla1 (ENSNFUG00015006459)	sox32 (ENSNFUG00015006467)	SOX17 (ENSNFUG00015006469)	ENSNFUG00015006471	ENSNFUG00015006473	ENSNFUG00015006481	VPS41 (ENSNFUG00015006492) #20	ENSNFUG00015006516	ENSNFUG00015006521	POU6F2 (ENSNFUG00015006526) #21	otulina (ENSNFUG00015006533) #22	FAM105BA (ENSNFUG00015006535) #23	ankha (ENSNFUG00015006543) #24	myca (ENSNFUG00015006602) #25	eef1a1l3 (ENSNFUG00015006608) #27	fam49bb (ENSNFUG00015006616) #26	ASAP1 (ENSNFUG00015006679)	NFX1 (ENSNFUG00015007270)	smarcd3b (ENSNFUG00015007631)	CHPF2 (ENSNFUG00015007700)	abcf2a (ENSNFUG00015007711)	CU694221.1 (ENSNFUG00015007762)	ENSNFUG00015007768	SLC4A2B (ENSNFUG00015007822)	ENSNFUG00015008423	OLA.2605 (ENSNFUG00015008426)
Mangrove rivulus	MODERN SPECIES	7	LPIN2 (ENSKMAG00000014888)	MYOM1 (ENSKMAG00000014989)	myl12.1 (ENSKMAG00000015085)	FASTKD3 (ENSKMAG00000015153)	chmp5b (ENSKMAG00000015178)	OPRK1 (ENSKMAG00000015223)	RGS20 (ENSKMAG00000015246)	lypla1 (ENSKMAG00000015266)	mrpl15 (ENSKMAG00000015306)	sox32 (ENSKMAG00000015350)	sox17 (ENSKMAG00000015407)	ENSKMAG00000015419	ENSKMAG00000015441	vps41 (ENSKMAG00000015509) #20	POU6F2 (ENSKMAG00000015680) #21	otulina (ENSKMAG00000015748) #22	ENSKMAG00000015762 #23	ankha (ENSKMAG00000015802) #24	myca (ENSKMAG00000015852) #25	fam49bb (ENSKMAG00000015874) #26	eef1a1l3 (ENSKMAG00000015910) #27	ASAP1 (ENSKMAG00000016018)	NFX1 (ENSKMAG00000016306)	smarcd3b (ENSKMAG00000016357)	CHPF2 (ENSKMAG00000016424)	abcf2a (ENSKMAG00000016453)	ENSKMAG00000016498	slc4a2b (ENSKMAG00000016571)	ENSKMAG00000016662	ENSKMAG00000016670	ENSKMAG00000016686
Ovalentaria_B	ANCESTRAL SPECIES	20	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j
Cichlidae	ANCESTRAL SPECIES	18	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j
Pseudocrenilabrinae	ANCESTRAL SPECIES	20	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	19	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j.a.b
Haplochromini	ANCESTRAL SPECIES	21	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j.a.b
Burton s mouthbrooder	MODERN SPECIES	319	LPIN2 (ENSHBUG00000016222)	MYOM1 (ENSHBUG00000016165)	MYL12B (ENSHBUG00000016121)	FASTKD3 (ENSHBUG00000016113)	chmp5b (ENSHBUG00000016103)	OPRK1 (ENSHBUG00000016074)	RGS20 (ENSHBUG00000016063)	lypla1 (ENSHBUG00000016035)	mrpl15 (ENSHBUG00000015988)	sox32 (ENSHBUG00000015975)	sox17 (ENSHBUG00000015949)	ENSHBUG00000015946	ENSHBUG00000015937	vps41 (ENSHBUG00000015897) #20	POU6F2 (ENSHBUG00000015845) #21	otulina (ENSHBUG00000015779) #22	ENSHBUG00000015748 #23	ankha (ENSHBUG00000015711) #24	myca (ENSHBUG00000015689) #25	fam49bb (ENSHBUG00000015548) #26	eef1a1l3 (ENSHBUG00000015515) #27	ASAP1 (ENSHBUG00000015490)	ENSHBUG00000015410	NFX1 (ENSHBUG00000015403)	smarcd3b (ENSHBUG00000015370)	CHPF2 (ENSHBUG00000015335)	abcf2a (ENSHBUG00000015296)	ENSHBUG00000015252	slc4a2b (ENSHBUG00000015231)	ENSHBUG00000015172	ENSHBUG00000015169
Haplochromini_A	ANCESTRAL SPECIES	21	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00940000182574	ENSGT00400000024709.i
P. nyererei	MODERN SPECIES	382	LPIN2 (ENSPNYG00000001433)	MYOM1 (ENSPNYG00000001499)	MYL12B (ENSPNYG00000001547)	FASTKD3 (ENSPNYG00000001552)	chmp5b (ENSPNYG00000001561)	ENSPNYG00000001599	RGS20 (ENSPNYG00000001656)	lypla1 (ENSPNYG00000001679)	mrpl15 (ENSPNYG00000001724)	sox32 (ENSPNYG00000001745)	sox17 (ENSPNYG00000001755)	ENSPNYG00000001764	ENSPNYG00000001796	vps41 (ENSPNYG00000001817) #20	POU6F2 (ENSPNYG00000001884) #21	otulina (ENSPNYG00000001920) #22	ENSPNYG00000001962 #23	ankha (ENSPNYG00000001985) #24	myca (ENSPNYG00000001998) #25	fam49bb (ENSPNYG00000002014) #26	eef1a1l3 (ENSPNYG00000002059) #27	ASAP1 (ENSPNYG00000002090)	ENSPNYG00000002170	NFX1 (ENSPNYG00000002175)	smarcd3b (ENSPNYG00000002187)	CHPF2 (ENSPNYG00000002249)	abcf2a (ENSPNYG00000002263)	ENSPNYG00000002314	slc4a2b (ENSPNYG00000002382)	ENSPNYG00000002404	ENSPNYG00000002424
Haplochromini_B	ANCESTRAL SPECIES	18	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00940000182574	ENSGT00400000024709.i	ENSGT00400000024709.j.a.b
Zebra mbuna	MODERN SPECIES	1112	LPIN2 (ENSMZEG00005001676)	MYOM1 (ENSMZEG00005001720)	MYL12B (ENSMZEG00005001784)	FASTKD3 (ENSMZEG00005001794)	chmp5b (ENSMZEG00005001802)	OPRK1 (ENSMZEG00005001899)	RGS20 (ENSMZEG00005018231)	lypla1 (ENSMZEG00005018237)	mrpl15 (ENSMZEG00005018245)	sox32 (ENSMZEG00005018250)	sox17 (ENSMZEG00005018255)	ENSMZEG00005018258	ENSMZEG00005018265	vps41 (ENSMZEG00005018272) #20	POU6F2 (ENSMZEG00005018293) #21	otulina (ENSMZEG00005018299) #22	ENSMZEG00005018310 #23	ankha (ENSMZEG00005018326) #24	myca (ENSMZEG00005018336) #25	fam49bb (ENSMZEG00005018345) #26	eef1a1l3 (ENSMZEG00005018358) #27	ASAP1 (ENSMZEG00005018371)	NFX1 (ENSMZEG00005018390)	smarcd3b (ENSMZEG00005018398)	CHPF2 (ENSMZEG00005018413)	abcf2a (ENSMZEG00005018416)	ENSMZEG00005018426	slc4a2b (ENSMZEG00005018443)	ENSMZEG00005018472	ENSMZEG00005018479	ENSMZEG00005018485
Lyretail cichlid	MODERN SPECIES	325	LPIN2 (ENSNBRG00000014589)	MYOM1 (ENSNBRG00000014495)	MYL12B (ENSNBRG00000014482)	FASTKD3 (ENSNBRG00000014435)	chmp5b (ENSNBRG00000014449)	OPRK1 (ENSNBRG00000014072)	RGS20 (ENSNBRG00000013954)	lypla1 (ENSNBRG00000013920)	mrpl15 (ENSNBRG00000013893)	sox32 (ENSNBRG00000013876)	sox17 (ENSNBRG00000013870)	ENSNBRG00000013854	ENSNBRG00000013843	vps41 (ENSNBRG00000013747) #20	POU6F2 (ENSNBRG00000013723) #21	otulina (ENSNBRG00000013688) #22	ENSNBRG00000013623 #23	ankha (ENSNBRG00000013594) #24	ENSNBRG00000013587 #25	fam49bb (ENSNBRG00000013562) #26	eef1a1l3 (ENSNBRG00000013552) #27	ASAP1 (ENSNBRG00000013502)	ENSNBRG00000013495	NFX1 (ENSNBRG00000013449)	smarcd3b (ENSNBRG00000013417)	CHPF2 (ENSNBRG00000013389)	abcf2a (ENSNBRG00000013377)	ENSNBRG00000013346	slc4a2b (ENSNBRG00000013268)	ENSNBRG00000013262	ENSNBRG00000013255
Nile tilapia	MODERN SPECIES	21	MYOM1 (ENSONIG00000006105)	ENSONIG00000029189	FASTKD3 (ENSONIG00000006120)	chmp5b (ENSONIG00000006122)	OPRK1 (ENSONIG00000006128)	RGS20 (ENSONIG00000038958)	lypla1 (ENSONIG00000006132)	mrpl15 (ENSONIG00000006134)	sox32 (ENSONIG00000006139)	sox17 (ENSONIG00000006141)	ENSONIG00000006142	ENSONIG00000027347	ENSONIG00000006143	vps41 (ENSONIG00000006145) #20	POU6F2 (ENSONIG00000006150) #21	otulina (ENSONIG00000006153) #22	ENSONIG00000006156 #23	ankha (ENSONIG00000006157) #24	myca (ENSONIG00000006161) #25	fam49bb (ENSONIG00000006163) #26	eef1a1l3 (ENSONIG00000042124) #27	ASAP1 (ENSONIG00000006169)	NFX1 (ENSONIG00000006192)	smarcd3b (ENSONIG00000006195)	CHPF2 (ENSONIG00000006202)	abcf2a (ENSONIG00000006206)	ENSONIG00000034346	slc4a2b (ENSONIG00000006209)	ENSONIG00000006235	ENSONIG00000028755	ENSONIG00000042395
Pomacentridae	ANCESTRAL SPECIES	11	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00390000004989.a.b
Pomacentridae_A	ANCESTRAL SPECIES	8	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000177207	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00390000004989.a.b
Amphiprion	ANCESTRAL SPECIES	7	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000177207	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00390000004989.a.b
Clown anemonefish	MODERN SPECIES	1034												nrbp2b (ENSAOCG00000013301)	ENSAOCG00000013320	vps41 (ENSAOCG00000000842) #20	POU6F2 (ENSAOCG00000013500) #21	otulina (ENSAOCG00000013507) #22	ENSAOCG00000013528 #23	ankha (ENSAOCG00000013571) #24	myca (ENSAOCG00000013584) #25
Orange clownfish	MODERN SPECIES	14	MYOM1 (ENSAPEG00000013722)	ENSAPEG00000013649	FASTKD3 (ENSAPEG00000013632)	chmp5b (ENSAPEG00000013601)	OPRK1 (ENSAPEG00000013233)	RGS20 (ENSAPEG00000013180)	lypla1 (ENSAPEG00000013123)	mrpl15 (ENSAPEG00000013090)	sox32 (ENSAPEG00000013081)	ENSAPEG00000013076	sox17 (ENSAPEG00000013070)	ENSAPEG00000013051	ENSAPEG00000013040	vps41 (ENSAPEG00000012869) #20	POU6F2 (ENSAPEG00000012836) #21	otulina (ENSAPEG00000012827) #22	ENSAPEG00000012819 #23	ankha (ENSAPEG00000012783) #24	myca (ENSAPEG00000012769) #25	fam49bb (ENSAPEG00000012710) #26	eef1a1l3 (ENSAPEG00000012670) #27	ASAP1 (ENSAPEG00000012491)	NFX1 (ENSAPEG00000012401)	smarcd3b (ENSAPEG00000012305)	CHPF2 (ENSAPEG00000012271)	abcf2a (ENSAPEG00000012199)	ENSAPEG00000012112	slc4a2b (ENSAPEG00000012059)	ENSAPEG00000012045	ENSAPEG00000012038	ENSAPEG00000012005
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	4297																otulina (ENSAPOG00000013804) #22
Spiny chromis	MODERN SPECIES	251																otulina (ENSAPOG00000016279) #22	ENSAPOG00000016293 #23	ankha (ENSAPOG00000016355) #24	myca (ENSAPOG00000016366) #25	fam49bb (ENSAPOG00000016390) #26	ENSAPOG00000016407	eef1a1l3 (ENSAPOG00000016459) #27	ASAP1 (ENSAPOG00000016620)	NFX1 (ENSAPOG00000016671)	smarcd3b (ENSAPOG00000016729)	CHPF2 (ENSAPOG00000016756)	abcf2a (ENSAPOG00000016835)	ENSAPOG00000016920	slc4a2b (ENSAPOG00000017003)	ENSAPOG00000017011	ENSAPOG00000017025
Bicolor damselfish	MODERN SPECIES	930				FASTKD3 (ENSSPAG00000004403)	chmp5b (ENSSPAG00000004385)	OPRK1 (ENSSPAG00000004373)	RGS20 (ENSSPAG00000004353)	lypla1 (ENSSPAG00000004315)	mrpl15 (ENSSPAG00000004300)	sox32 (ENSSPAG00000004285)	sox17 (ENSSPAG00000004274)	ENSSPAG00000004260	ENSSPAG00000004240	vps41 (ENSSPAG00000004169) #20	POU6F2 (ENSSPAG00000004115) #21	otulina (ENSSPAG00000004101) #22	ENSSPAG00000004066 #23	ENSSPAG00000004043	ankha (ENSSPAG00000004005) #24
Percomorphaceae_C	ANCESTRAL SPECIES	21	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j
Eupercaria	ANCESTRAL SPECIES	20	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00390000004989.a.b
Tetraodontidae	ANCESTRAL SPECIES	18	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00390000004989.a.b.b
Fugu	MODERN SPECIES	1	EMILIN2 (ENSTRUG00000003983)	LPIN2 (ENSTRUG00000004278)	ENSTRUG00000011112	FASTKD3 (ENSTRUG00000006808)	OPRK1 (ENSTRUG00000007104)	ENSTRUG00000007273	lypla1 (ENSTRUG00000007339)	mrpl15 (ENSTRUG00000007522)	sox32 (ENSTRUG00000007604)	sox17 (ENSTRUG00000007618)	ENSTRUG00000032813	ENSTRUG00000022738	ENSTRUG00000007762	vps41 (ENSTRUG00000007800) #20	POU6F2 (ENSTRUG00000008239) #21	otulina (ENSTRUG00000008377) #22	ENSTRUG00000008441 #23	ankha (ENSTRUG00000008542) #24	myc (ENSTRUG00000008797) #25	eef1a1l3 (ENSTRUG00000009006) #27	ASAP1 (ENSTRUG00000009127)	NFX1 (ENSTRUG00000009872)	CHPF2 (ENSTRUG00000010232)	abcf2a (ENSTRUG00000010308)	ENSTRUG00000023734	ENSTRUG00000021158	ENSTRUG00000025521	ENSTRUG00000021475	ENSTRUG00000024352	ENSTRUG00000024686	ENSTRUG00000032484
Eupecaria_A	ANCESTRAL SPECIES	19	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00390000004989.a.b
Ballan wrasse	MODERN SPECIES	514															POU6F2 (ENSLBEG00000021568) #21	otulina (ENSLBEG00000021553) #22	ENSLBEG00000021536 #23	ankha (ENSLBEG00000021437) #24	myca (ENSLBEG00000021421) #25	fam49bb (ENSLBEG00000021375) #26	eef1a1l3 (ENSLBEG00000021334) #27	ASAP1 (ENSLBEG00000021158)
Eupecaria_B	ANCESTRAL SPECIES	19	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00390000004989.a.b
Eupecaria_C	ANCESTRAL SPECIES	19	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00390000004989.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	17	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00390000004989.a.b
European seabass	MODERN SPECIES	8	LPIN2 (ENSDLAG00005020298)	MYOM1 (ENSDLAG00005020579)	myl12.1 (ENSDLAG00005021974)	ENSDLAG00005021782	CHMP5 (ENSDLAG00005026401)	ENSDLAG00005027177	RGS20 (ENSDLAG00005021819)	LYPLA1 (ENSDLAG00005021821)	mrpl15 (ENSDLAG00005021825)	sox32 (ENSDLAG00005021835)	Sox17 (ENSDLAG00005021840)	ENSDLAG00005033061	ENSDLAG00005034380	vps41 (ENSDLAG00005027328) #20	ENSDLAG00005022491 #21	otulina (ENSDLAG00005026394) #22	ENSDLAG00005022508 #23	ANKH (ENSDLAG00005022519) #24	ENSDLAG00005030484	myca (ENSDLAG00005022642) #25	fam49bb (ENSDLAG00005004275) #26	42SP50 (ENSDLAG00005004878) #27	ASAP1 (ENSDLAG00005005012)	ENSDLAG00005008350	SMARCD3 (ENSDLAG00005008660)	ENSDLAG00005030890	ABCF2 (ENSDLAG00005009120)	ENSDLAG00005009346	slc4a2b (ENSDLAG00005009418)	ENSDLAG00005032892	ENSDLAG00005033004
Large yellow croaker	MODERN SPECIES	494	MYOM1 (ENSLCRG00005021839)	ENSLCRG00005021833	FASTKD3 (ENSLCRG00005021832)	chmp5b (ENSLCRG00005021831)	OPRK1 (ENSLCRG00005021829)	RGS20 (ENSLCRG00005021827)	lypla1 (ENSLCRG00005021825)	mrpl15 (ENSLCRG00005021824)	sox32 (ENSLCRG00005021823)	sox17 (ENSLCRG00005021821)	ENSLCRG00005021820	ENSLCRG00005021819	vps41 (ENSLCRG00005021128) #20	POU6F2 (ENSLCRG00005021122) #21	ENSLCRG00005021120	otulina (ENSLCRG00005021119) #22	ENSLCRG00005021118 #23	ankha (ENSLCRG00005021116) #24	myc (ENSLCRG00005021115) #25	fam49bb (ENSLCRG00005020950) #26	eef1a1l3 (ENSLCRG00005020945) #27	ASAP1 (ENSLCRG00005020349)	NFX1 (ENSLCRG00005020336)	smarcd3b (ENSLCRG00005020325)	CHPF2 (ENSLCRG00005020323)	abcf2a (ENSLCRG00005020309)	ENSLCRG00005020304	slc4a2b (ENSLCRG00005017301)	ENSLCRG00005017252	ENSLCRG00005017249	ENSLCRG00005017248
Gilthead seabream	MODERN SPECIES	10	LPIN2 (ENSSAUG00010007842)	MYOM1 (ENSSAUG00010002943)	myl12.1 (ENSSAUG00010002678)	FASTKD3 (ENSSAUG00010002671)	chmp5b (ENSSAUG00010002659)	OPRK1 (ENSSAUG00010002649)	ENSSAUG00010002637	lypla1 (ENSSAUG00010002627)	mrpl15 (ENSSAUG00010002618)	sox32 (ENSSAUG00010002613)	sox17 (ENSSAUG00010025902)	ENSSAUG00010025900	ENSSAUG00010025898	vps41 (ENSSAUG00010025600) #20	POU6F2 (ENSSAUG00010025588) #21	otulina (ENSSAUG00010025586) #22	ENSSAUG00010025585 #23	ankha (ENSSAUG00010025442) #24	myca (ENSSAUG00010025436) #25	fam49bb (ENSSAUG00010025420) #26	eef1a1l3 (ENSSAUG00010025416) #27	ASAP1 (ENSSAUG00010025209)	NFX1 (ENSSAUG00010025069)	smarcd3b (ENSSAUG00010025032)	CHPF2 (ENSSAUG00010025025)	abcf2a (ENSSAUG00010024908)	ENSSAUG00010024905	slc4a2b (ENSSAUG00010023272)	ENSSAUG00010023243	ENSSAUG00010023242	ENSSAUG00010023241
Perciformes	ANCESTRAL SPECIES	21	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00390000004989.a.b
Perciformes_a	ANCESTRAL SPECIES	22	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00390000004989.a.b
Channel bull blenny	MODERN SPECIES	12	LPIN2 (ENSCGOG00000014886)	MYOM1 (ENSCGOG00000016666)	myl12.1 (ENSCGOG00000017811)	FASTKD3 (ENSCGOG00000017819)	chmp5b (ENSCGOG00000017831)	OPRK1 (ENSCGOG00000017923)	RGS20 (ENSCGOG00000017925)	lypla1 (ENSCGOG00000017926)	mrpl15 (ENSCGOG00000017943)	sox32 (ENSCGOG00000017944)	sox17 (ENSCGOG00000017946)	ENSCGOG00000017949	ENSCGOG00000017953	vps41 (ENSCGOG00000017994) #20	POU6F2 (ENSCGOG00000018748) #21	otulina (ENSCGOG00000018764) #22	ENSCGOG00000018766 #23	ankha (ENSCGOG00000018772) #24	myca (ENSCGOG00000018778) #25	fam49bb (ENSCGOG00000018802) #26	eef1a1l3 (ENSCGOG00000019712) #27	ASAP1 (ENSCGOG00000019982)	NFX1 (ENSCGOG00000021523)	smarcd3b (ENSCGOG00000021683)	CHPF2 (ENSCGOG00000021797)	abcf2a (ENSCGOG00000021806)	ENSCGOG00000022001	slc4a2b (ENSCGOG00000022017)	ENSCGOG00000022177	ENSCGOG00000022178	ENSCGOG00000022180
Pike perch	MODERN SPECIES	94	LPIN2 (ENSSLUG00000021324)	MYOM1 (ENSSLUG00000020557)	ENSSLUG00000020395	FASTKD3 (ENSSLUG00000020391)	chmp5b (ENSSLUG00000020380)	OPRK1 (ENSSLUG00000020365)	RGS20 (ENSSLUG00000020354)	lypla1 (ENSSLUG00000020344)	mrpl15 (ENSSLUG00000020332)	sox32 (ENSSLUG00000020322)	sox17 (ENSSLUG00000020318)	ENSSLUG00000020306	ENSSLUG00000020296	vps41 (ENSSLUG00000018137) #20	POU6F2 (ENSSLUG00000017996) #21	otulina (ENSSLUG00000017991) #22	ENSSLUG00000017986 #23	ankha (ENSSLUG00000017973) #24	myca (ENSSLUG00000017958) #25	fam49bb (ENSSLUG00000017424) #26	eef1a1l3 (ENSSLUG00000017352) #27	ASAP1 (ENSSLUG00000013531)	NFX1 (ENSSLUG00000013237)	smarcd3b (ENSSLUG00000013142)	CHPF2 (ENSSLUG00000013109)	abcf2a (ENSSLUG00000012962)	ENSSLUG00000012897	slc4a2b (ENSSLUG00000009083)	ENSSLUG00000008888	ENSSLUG00000008884	ENSSLUG00000008874
Cottioidei	ANCESTRAL SPECIES	21	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00390000004989.a.b
Lumpfish	MODERN SPECIES	12	LPIN2 (ENSCLMG00005019319)	MYOM1 (ENSCLMG00005019225)	myl12.1 (ENSCLMG00005019219)	FASTKD3 (ENSCLMG00005019217)	chmp5b (ENSCLMG00005019196)	OPRK1 (ENSCLMG00005019194)	ENSCLMG00005019191	lypla1 (ENSCLMG00005019189)	mrpl15 (ENSCLMG00005019186)	sox32 (ENSCLMG00005019184)	sox17 (ENSCLMG00005019182)	ENSCLMG00005019181	ENSCLMG00005019179	vps41 (ENSCLMG00005018297) #20	POU6F2 (ENSCLMG00005018281) #21	otulina (ENSCLMG00005018280) #22	ENSCLMG00005018278 #23	ankha (ENSCLMG00005018274) #24	myca (ENSCLMG00005018272) #25	fam49bb (ENSCLMG00005018082) #26	eef1a1l3 (ENSCLMG00005018075) #27	ASAP1 (ENSCLMG00005014493)	NFX1 (ENSCLMG00005014385)	smarcd3b (ENSCLMG00005014373)	CHPF2 (ENSCLMG00005014371)	abcf2a (ENSCLMG00005013875)	ENSCLMG00005013869	slc4a2b (ENSCLMG00005013816)	ENSCLMG00005013812	ENSCLMG00005013811	ENSCLMG00005013810
Stickleback	MODERN SPECIES	20	MYOM1 (ENSGACG00000004209)	MYL12B (ENSGACG00000004252)	FASTKD3 (ENSGACG00000004261)	chmp5b (ENSGACG00000004275)	OPRK1 (ENSGACG00000004282)	RGS20 (ENSGACG00000004297)	lypla1 (ENSGACG00000004303)	mrpl15 (ENSGACG00000004336)	sox32 (ENSGACG00000004344)	sox17 (ENSGACG00000004347)	ENSGACG00000004356	ENSGACG00000004359	ENSGACG00000004363	vps41 (ENSGACG00000004365) #20	POU6F2 (ENSGACG00000004422) #21	otulina (ENSGACG00000004435) #22	ENSGACG00000004436 #23	ankha (ENSGACG00000004445) #24	myca (ENSGACG00000004456) #25	fam49bb (ENSGACG00000004460) #26	eef1a1l3 (ENSGACG00000004505) #27	ASAP1 (ENSGACG00000004538)	ENSGACG00000004557	NFX1 (ENSGACG00000004560)	smarcd3b (ENSGACG00000004586)	CHPF2 (ENSGACG00000004595)	abcf2a (ENSGACG00000004604)	ENSGACG00000004661	slc4a2b (ENSGACG00000004664)	ENSGACG00000004690	ENSGACG00000004694
Percomorphaceae_D	ANCESTRAL SPECIES	21	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j
Carangaria	ANCESTRAL SPECIES	21	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j
Carangaria_A	ANCESTRAL SPECIES	15	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h.b	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000178871	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j
Seriola	ANCESTRAL SPECIES	27	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h.b	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j
Greater amberjack	MODERN SPECIES	217	LPIN2 (ENSSDUG00000008211)	MYOM1 (ENSSDUG00000008284)	FASTKD3 (ENSSDUG00000008377)	ENSSDUG00000008469	chmp5b (ENSSDUG00000008690)	OPRK1 (ENSSDUG00000008713)	RGS20 (ENSSDUG00000008724)	lypla1 (ENSSDUG00000008747)	mrpl15 (ENSSDUG00000008800)	sox32 (ENSSDUG00000008853)	sox17 (ENSSDUG00000008856)	ENSSDUG00000008866	ENSSDUG00000008878	vps41 (ENSSDUG00000008907) #20	POU6F2 (ENSSDUG00000009014) #21	otulina (ENSSDUG00000009032) #22	ENSSDUG00000009039 #23	ankha (ENSSDUG00000009056) #24	myca (ENSSDUG00000009070) #25	fam49bb (ENSSDUG00000009087) #26	eef1a1l3 (ENSSDUG00000009163) #27	ASAP1 (ENSSDUG00000009202)	NFX1 (ENSSDUG00000009395)	smarcd3b (ENSSDUG00000009485)	CHPF2 (ENSSDUG00000009673)	abcf2a (ENSSDUG00000009698)	ENSSDUG00000009751	slc4a2b (ENSSDUG00000009824)	ENSSDUG00000009855	ENSSDUG00000009867	ENSSDUG00000009876
Yellowtail amberjack	MODERN SPECIES	2786	LPIN2 (ENSSLDG00000023308)	MYOM1 (ENSSLDG00000023372)	ENSSLDG00000023443	FASTKD3 (ENSSLDG00000023450)	chmp5b (ENSSLDG00000023455)	OPRK1 (ENSSLDG00000023482)	RGS20 (ENSSLDG00000023492)	lypla1 (ENSSLDG00000023510)	mrpl15 (ENSSLDG00000023535)	sox32 (ENSSLDG00000023548)	sox17 (ENSSLDG00000023554)	ENSSLDG00000023564	ENSSLDG00000023584	vps41 (ENSSLDG00000023609) #20	POU6F2 (ENSSLDG00000023665) #21	otulina (ENSSLDG00000023685) #22	ENSSLDG00000023688	ankha (ENSSLDG00000023694) #24	myca (ENSSLDG00000023709) #25	fam49bb (ENSSLDG00000023740) #26	eef1a1l3 (ENSSLDG00000023761) #27	ASAP1 (ENSSLDG00000023775)	ENSSLDG00000023812	NFX1 (ENSSLDG00000023817)	smarcd3b (ENSSLDG00000023831)	CHPF2 (ENSSLDG00000023839)	abcf2a (ENSSLDG00000023850)	ENSSLDG00000023874	slc4a2b (ENSSLDG00000023917)	ENSSLDG00000023951	ENSSLDG00000023956
Pleuronectoidei	ANCESTRAL SPECIES	12	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT01060000248676.a.b	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j
Tongue sole	MODERN SPECIES	13	CDH18 (ENSCSEG00000000244)	EPC1 (ENSCSEG00000000239)	ENSCSEG00000000235	ENSCSEG00000000233	ENSCSEG00000000219	ENSCSEG00000000217	ggh (ENSCSEG00000000213)	ENSCSEG00000000211	lypla1 (ENSCSEG00000019983)	mrpl15 (ENSCSEG00000019973)	sox32 (ENSCSEG00000019963)	ENSCSEG00000019960	ENSCSEG00000019945	vps41 (ENSCSEG00000019919) #20	POU6F2 (ENSCSEG00000019909) #21	otulina (ENSCSEG00000019902) #22	ENSCSEG00000019897 #23	ankha (ENSCSEG00000019891) #24	myca (ENSCSEG00000019889) #25	puf60b (ENSCSEG00000019887)	nrbp2b (ENSCSEG00000019882)	ENSCSEG00000019879	ENSCSEG00000019877	slc4a2b (ENSCSEG00000019871)	ENSCSEG00000019865	abcf2a (ENSCSEG00000019855)	CHPF2 (ENSCSEG00000019853)	smarcd3b (ENSCSEG00000019844)	NFX1 (ENSCSEG00000019832)	ENSCSEG00000019827	ASAP1 (ENSCSEG00000019814)
Anabantaria	ANCESTRAL SPECIES	22	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00390000004989.a.b
Anabantoidei	ANCESTRAL SPECIES	20	ENSGT00940000156313.c.a	ENSGT00940000154982.c	ENSGT00940000153607.a.b	ENSGT01030000234607.A.a.a.a.c	ENSGT00550000074817.u	ENSGT00940000157341.h	ENSGT00940000159123.b	ENSGT00940000154185	ENSGT00390000009040	ENSGT00940000166366	ENSGT00940000156694	ENSGT00940000154242.b.h	ENSGT00940000157762	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.c.b #24	ENSGT00940000155285.b.j.a.b #25	ENSGT00390000015159.b.a #26	ENSGT00940000165526 #27	ENSGT00940000158547.c	ENSGT00940000156325	ENSGT00940000158945	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00400000022514	ENSGT00940000158259.b	ENSGT00400000024709.i	ENSGT00400000024709.j	ENSGT00390000004989.a.b
Climbing perch	MODERN SPECIES	11	LPIN2 (ENSATEG00000003541)	MYOM1 (ENSATEG00000003376)	MYL12B (ENSATEG00000003352)	ENSATEG00000003307	ENSATEG00000003315	ENSATEG00000002927	RGS20 (ENSATEG00000002862)	lypla1 (ENSATEG00000002817)	mrpl15 (ENSATEG00000002782)	sox32 (ENSATEG00000002737)	sox17 (ENSATEG00000002736)	ENSATEG00000030084	ENSATEG00000002677	vps41 (ENSATEG00000002605) #20	ENSATEG00000002547 #21	otulina (ENSATEG00000002497) #22	ENSATEG00000002491 #23	ankha (ENSATEG00000026272) #24	myca (ENSATEG00000002279) #25	fam49bb (ENSATEG00000002221) #26	ASAP1 (ENSATEG00000002089)	ENSATEG00000002080	SMARCD3 (ENSATEG00000002061)	ENSATEG00000002039	ABCF2 (ENSATEG00000001990)	ENSATEG00000001889	slc4a2b (ENSATEG00000001881)	ENSATEG00000027615	ENSATEG00000001869	ENSATEG00000001831	ENSATEG00000027507
Siamese fighting fish	MODERN SPECIES	15	LPIN2 (ENSBSLG00000007133)	MYOM1 (ENSBSLG00000007221)	ENSBSLG00000007317	ENSBSLG00000007723	ENSBSLG00000007775	ENSBSLG00000007833	RGS20 (ENSBSLG00000007869)	lypla1 (ENSBSLG00000007880)	mrpl15 (ENSBSLG00000007948)	sox32 (ENSBSLG00000007961)	sox17 (ENSBSLG00000007974)	ENSBSLG00000007985	ENSBSLG00000007995	vps41 (ENSBSLG00000008119) #20	POU6F2 (ENSBSLG00000010482) #21	otulina (ENSBSLG00000010498) #22	ENSBSLG00000010504 #23	ENSBSLG00000010513	ankha (ENSBSLG00000010518) #24	myca (ENSBSLG00000010568) #25	fam49bb (ENSBSLG00000010686) #26	eef1a1l3 (ENSBSLG00000010889) #27	ASAP1 (ENSBSLG00000010963)	NFX1 (ENSBSLG00000012452)	smarcd3b (ENSBSLG00000012640)	CHPF2 (ENSBSLG00000013088)	abcf2a (ENSBSLG00000013379)	ENSBSLG00000014389	slc4a2b (ENSBSLG00000014467)	ENSBSLG00000015066	ENSBSLG00000015068
Osteoglossiformes	ANCESTRAL SPECIES	375											ENSGT01030000234518.E.c.b	ENSGT00940000160766.a	ENSGT00950000182882.A.b.a.x	ENSGT00390000000481 #20	ENSGT00940000156175.c #21	ENSGT00390000011176 #22	ENSGT00390000009802.b #23	ENSGT00390000012189.a #24	ENSGT00940000155285.b.j.b ##25	ENSGT00390000015159.b.d #26	ENSGT00940000158547.d	ENSGT00390000014069.a	ENSGT00940000166257
Asian bonytongue	MODERN SPECIES	18	FARP2 (ENSSFOG00015015409)	ENSSFOG00015031070	sox14 (ENSSFOG00015015459)	CLDN18 (ENSSFOG00015015473)	med8 (ENSSFOG00015015491)	zgc:109982 (ENSSFOG00015015521)	ncf2 (ENSSFOG00015015549)	garem (ENSSFOG00015015612)	SZT2 (ENSSFOG00015015645)	hyi (ENSSFOG00015015784)	RNF182 (ENSSFOG00015015797)	ENSSFOG00015015807	SFRP4 (ENSSFOG00015015826)	vps41 (ENSSFOG00015015870) #20	POU6F2 (ENSSFOG00015015897) #21	otulina (ENSSFOG00015025439) #22	OTULIN (ENSSFOG00015015927) #23	KCNJ10 (ENSSFOG00015015941)	ENSSFOG00015026520	ENSSFOG00015015958	ENSSFOG00015015991	ENSSFOG00015016020	ndufs2 (ENSSFOG00015016033)	KIRREL1 (ENSSFOG00015016073)	PIP4P1 (ENSSFOG00015026379)	zgc:77880 (ENSSFOG00015016117)	zgc:153146 (ENSSFOG00015016159)	snx25 (ENSSFOG00015016180)	ENSSFOG00015016228	irf2 (ENSSFOG00015016268)	enpp6 (ENSSFOG00015016299)
P. kingsleyae	MODERN SPECIES	85	ENSPKIG00000017986	ENSPKIG00000017959	cavin4b (ENSPKIG00000017945)	ENSPKIG00000017895	ENSPKIG00000017846	ENSPKIG00000017823	gprc5ba (ENSPKIG00000017809)	RNF182 (ENSPKIG00000017797)	zgc:165532 (ENSPKIG00000017770)	ENSPKIG00000017739	SFRP4 (ENSPKIG00000017725)	ENSPKIG00000017680	AMPH (ENSPKIG00000017616)	vps41 (ENSPKIG00000017570) #20	POU6F2 (ENSPKIG00000017536) #21	otulina (ENSPKIG00000017520) #22	ENSPKIG00000017476 #23	ANKH (ENSPKIG00000017445) #24	ENSPKIG00000017428	mycb (ENSPKIG00000017411) ##25	ENSPKIG00000017320 #26	eef1a1l3 (ENSPKIG00000017246) #27	ASAP1 (ENSPKIG00000017059)	NFX1 (ENSPKIG00000016899)	ENSPKIG00000016855	ENSPKIG00000016807	ENSPKIG00000016787	SMARCD3 (ENSPKIG00000016701)	CHPF2 (ENSPKIG00000016657)	abcf2b (ENSPKIG00000016624)	ENSPKIG00000016606
Spotted gar	MODERN SPECIES	675	ENSLOCG00000011461	ENSLOCG00000011451	SFRP4 (ENSLOCG00000011445)	epdr1 (ENSLOCG00000011436)	stard3nl (ENSLOCG00000011426)	ENSLOCG00000011415	TRGV9 (ENSLOCG00000018133)	ENSLOCG00000011411	TRGV9 (ENSLOCG00000011394)	ENSLOCG00000011384	ENSLOCG00000011374	ENSLOCG00000011369	amph (ENSLOCG00000011353)	vps41 (ENSLOCG00000011337) #20	POU6F2 (ENSLOCG00000011317) #21	otulina (ENSLOCG00000011304) #22	otulinb (ENSLOCG00000011294) #23	ankhb (ENSLOCG00000011283) #24	myca (ENSLOCG00000011270) #25	fam49bb (ENSLOCG00000011261) #26	eef1a1l3 (ENSLOCG00000011245) #27	asap1a (ENSLOCG00000011231)	NFX1 (ENSLOCG00000011211)	ENSLOCG00000011201	ENSLOCG00000011184	chmp5b (ENSLOCG00000011176)	bag1 (ENSLOCG00000011163)	FASTKD3 (ENSLOCG00000011153)	myl12.1 (ENSLOCG00000011144)	myom1a (ENSLOCG00000011117)	LPIN2 (ENSLOCG00000011093)
Reedfish	MODERN SPECIES	368																ENSECRG00000013867 #22
Sarcopterygii	ANCESTRAL SPECIES	184				ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000164537	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b	ENSGT00970000195704	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00960000187176	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36
Tetrapoda	ANCESTRAL SPECIES	40	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b	ENSGT00970000195704	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Amniota	ANCESTRAL SPECIES	7	ENSGT00390000008749.e	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
Sauria	ANCESTRAL SPECIES		ENSGT00390000008749.e	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
Archelosauria	ANCESTRAL SPECIES	6	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a	ENSGT00940000153143.a.b.a.a.b	ENSGT00940000153143.a.a	ENSGT00940000153143.a.b.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
Cryptodira	ANCESTRAL SPECIES	4	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a	ENSGT00940000153143.a.b.a.a.b	ENSGT00940000153143.a.a	ENSGT00940000153143.a.b.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a	ENSGT00940000153143.a.b.a.b.b	ENSGT00940000153143.a.b.a.b.a	ENSGT00940000153143.a.a	ENSGT00940000153143.a.b.a.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925.sb.b #36	ENSGT00960000190657	ENSGT00940000155925.sb.a #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985
Emydidae	ANCESTRAL SPECIES	61													ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925.sb.a #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	85												ENSTMTG00000015022	ENSTMTG00000015054	ENSTMTG00000015075 #20	ENSTMTG00000015123 #21	ENSTMTG00000015203 #22	RALA (ENSTMTG00000015208)	ENSTMTG00000015216	ENSTMTG00000015269	ENSTMTG00000015276	ENSTMTG00000015305	ENSTMTG00000015313 #36	ENSTMTG00000015335	ENSTMTG00000015340	ENSTMTG00000015353
Three-toed box turtle	MODERN SPECIES	83												ENSTMTG00000003139	ENSTMTG00000003160	ENSTMTG00000003170 #20	ENSTMTG00000003213 #21	ENSTMTG00000003231 #22	ENSTMTG00000003243	ENSTMTG00000003261	ENSTMTG00000003279	ENSTMTG00000003290	ENSTMTG00000003311	ENSTMTG00000003322 #36	ENSTMTG00000003358 #36	ENSTMTG00000003366	ENSTMTG00000003390	ENSTMTG00000003402	ENSTMTG00000003511	ENSTMTG00000004163	ENSTMTG00000004185	ENSTMTG00000004213	ENSTMTG00000004237
painted turtle	MODERN SPECIES	724	ENSCPBG00000024795	MRPL32 (ENSCPBG00000024797)	HECW1 (ENSCPBG00000024801)	STK17A (ENSCPBG00000024813)	COA1 (ENSCPBG00000024814)	BLVRA (ENSCPBG00000024817)	VOPP1 (ENSCPBG00000024819)	LANCL2 (ENSCPBG00000024826)	EGFR (ENSCPBG00000024828)	ENSCPBG00000024829	ENSCPBG00000024830	SEC61G (ENSCPBG00000024831)	ENSCPBG00000024833	VPS41 (ENSCPBG00000024840) #20	POU6F2 (ENSCPBG00000024844) #21	YAE1 (ENSCPBG00000024849) #22	ENSCPBG00000024850	RALA (ENSCPBG00000024854)	CDK13 (ENSCPBG00000024855)	MPLKIP (ENSCPBG00000024885)	SUGCT (ENSCPBG00000024889)	ENSCPBG00000024892	INHBA (ENSCPBG00000024895)	GLI3 (ENSCPBG00000024898) #36	ENSCPBG00000024905	AMPH (ENSCPBG00000024907)	STARD3NL (ENSCPBG00000024914)	ENSCPBG00000024918	ENSCPBG00000024921	ENSCPBG00000024926	ENSCPBG00000024932
Testudinidae	ANCESTRAL SPECIES	1	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a	ENSGT00940000153143.a.b.a.a.b	ENSGT00940000153143.a.b.a.b.b	ENSGT00940000153143.a.b.a.b.a	ENSGT00940000153143.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925.sb.b #36	ENSGT00960000190657	ENSGT00940000155925.sb.a #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
Abingdon island giant tortoise	MODERN SPECIES	1755															ENSCABG00000000371 #21	YAE1 (ENSCABG00000000381) #22	RALA (ENSCABG00000000393)	CDK13 (ENSCABG00000000422)	MPLKIP (ENSCABG00000000518)	INHBA (ENSCABG00000000528)	GLI3 (ENSCABG00000000545) #36	C7orf25 (ENSCABG00000000568)	PSMA2 (ENSCABG00000000578)	MRPL32 (ENSCABG00000000584)	HECW1 (ENSCABG00000000619)	ENSCABG00000001206	COA1 (ENSCABG00000001208)	BLVRA (ENSCABG00000001215)	VOPP1 (ENSCABG00000001223)	LANCL2 (ENSCABG00000001233)	ENSCABG00000001238
Goode s thornscrub tortoise	MODERN SPECIES	11	EPDR1 (ENSGEVG00005006703)	STARD3NL (ENSGEVG00005006723)	ENSGEVG00005006795	ENSGEVG00005006865	ENSGEVG00005007039	ENSGEVG00005007050	ENSGEVG00005007079	ENSGEVG00005007108	ENSGEVG00005007133	ENSGEVG00005007154	ENSGEVG00005007175	ENSGEVG00005007188	ENSGEVG00005007210	VPS41 (ENSGEVG00005007364) #20	POU6F2 (ENSGEVG00005007472) #21	YAE1 (ENSGEVG00005007590) #22	RALA (ENSGEVG00005007679)	CDK13 (ENSGEVG00005007718)	MPLKIP (ENSGEVG00005007861)	SUGCT (ENSGEVG00005007876)	INHBA (ENSGEVG00005007926)	ENSGEVG00005007961 #36	ENSGEVG00005008044 #36	ENSGEVG00005008058	C7orf25 (ENSGEVG00005008083)	PSMA2 (ENSGEVG00005008107)	MRPL32 (ENSGEVG00005008121)	HECW1 (ENSGEVG00005008218)	COA1 (ENSGEVG00005008672)	STK17A (ENSGEVG00005008698)	VOPP1 (ENSGEVG00005008715)
Chinese turtle	MODERN SPECIES	1165	AOAH (ENSPSIG00000016738)	ELMO1 (ENSPSIG00000016783)	GPR141 (ENSPSIG00000002050)	ENSPSIG00000002052	ENSPSIG00000016893	ENSPSIG00000016913	ENSPSIG00000016925	NME8 (ENSPSIG00000016965)	SFRP4 (ENSPSIG00000016980)	EPDR1 (ENSPSIG00000017008)	STARD3NL (ENSPSIG00000017010)	ENSPSIG00000017099	AMPH (ENSPSIG00000017102)	VPS41 (ENSPSIG00000017194) #20	POU6F2 (ENSPSIG00000017568) #21	YAE1 (ENSPSIG00000017587) #22	RALA (ENSPSIG00000017626)	CDK13 (ENSPSIG00000017710)	SUGCT (ENSPSIG00000017754)	ENSPSIG00000002054	INHBA (ENSPSIG00000017783)	GLI3 (ENSPSIG00000017804) #36	C7orf25 (ENSPSIG00000017908)	PSMA2 (ENSPSIG00000017910)	MRPL32 (ENSPSIG00000017913)	HECW1 (ENSPSIG00000017946)	STK17A (ENSPSIG00000018051)	COA1 (ENSPSIG00000018101)	BLVRA (ENSPSIG00000018103)	VOPP1 (ENSPSIG00000018109)	LANCL2 (ENSPSIG00000004380)
Archosauria	ANCESTRAL SPECIES		ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.a.a.a	ENSGT00940000153143.a.a	ENSGT00940000153143.a.b.a.a.b	ENSGT00940000153143.a.b.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Aves	ANCESTRAL SPECIES	24									ENSGT00940000153143.a.a	ENSGT00940000153143.a.b.a.b	ENSGT00940000153143.a.b.a.a.a	ENSGT00940000153143.a.b.a.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Neognathae	ANCESTRAL SPECIES		ENSGT00940000156069	ENSGT00390000010255	ENSGT00390000001455	ENSGT00940000155331.A	ENSGT00390000005586	ENSGT00940000161762	ENSGT00940000159827	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153143.a.b.a.a.a	ENSGT00940000153143.a.b.a.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Galloanserae	ANCESTRAL SPECIES		ENSGT00940000156069	ENSGT00390000010255	ENSGT00390000001455	ENSGT00940000155331.A	ENSGT00390000005586	ENSGT00940000161762	ENSGT00940000159827	ENSGT00940000156503.c	ENSGT00940000156503.d	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153143.a.b.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Anatidae	ANCESTRAL SPECIES	1	ENSGT00390000010255	ENSGT00390000001455	ENSGT00940000155331.A	ENSGT00390000005586	ENSGT00940000161762	ENSGT00940000159827	ENSGT00940000156503.c	ENSGT00940000156503.d	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153143.a.b.a.a.a	ENSGT00940000153143.a.b.a.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Pink-footed goose	MODERN SPECIES	105															ENSABRG00000000006 #21	YAE1 (ENSABRG00000009780) #22	ENSABRG00000009736	RALA (ENSABRG00000009721)	ENSABRG00000009714	CDK13 (ENSABRG00000009706)	MPLKIP (ENSABRG00000009693)	SUGCT (ENSABRG00000009661)	INHBA (ENSABRG00000009640)	GLI3 (ENSABRG00000009626) #36	C7orf25 (ENSABRG00000009604)	PSMA2 (ENSABRG00000009600)	MRPL32 (ENSABRG00000009591)	HECW1 (ENSABRG00000009515)	STK17A (ENSABRG00000009500)	COA1 (ENSABRG00000009488)	BLVRA (ENSABRG00000009477)
Duck	MODERN SPECIES	10	ENSAPLG00000024250	ENSAPLG00000026158	PDE1C (ENSAPLG00000008225)	ENSAPLG00000024507	PPP1R17 (ENSAPLG00000009013)	ENSAPLG00000027819	NEUROD6 (ENSAPLG00000009187)	ITGA9 (ENSAPLG00000009236)	ENSAPLG00000024831	GOLGA4 (ENSAPLG00000010196)	LRRFIP2 (ENSAPLG00000010430)	AMPH (ENSAPLG00000005709)	VPS41 (ENSAPLG00000005152) #20	POU6F2 (ENSAPLG00000005140) #21	ENSAPLG00000019588	YAE1 (ENSAPLG00000005137) #22	ENSAPLG00000005034	RALA (ENSAPLG00000004950)	CDK13 (ENSAPLG00000004750)	MPLKIP (ENSAPLG00000030999)	SUGCT (ENSAPLG00000004741)	INHBA (ENSAPLG00000018903)	ENSAPLG00000030837	GLI3 (ENSAPLG00000004361) #36	C7orf25 (ENSAPLG00000000791)	PSMA2 (ENSAPLG00000022687)	MRPL32 (ENSAPLG00000004159)	ENSAPLG00000028375	ENSAPLG00000029678	HECW1 (ENSAPLG00000004015)	STK17A (ENSAPLG00000003875)
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00500000045246	ENSGT00940000156069	ENSGT00390000010255	ENSGT00390000001455	ENSGT00940000155331.A	ENSGT00390000005586	ENSGT00940000161762	ENSGT00940000159827	ENSGT00940000156503.c	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153143.a.b.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00390000011072	ENSGT00390000015821	ENSGT00530000063186.b.a
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00940000162490	ENSGT00500000045246	ENSGT00940000156069	ENSGT00390000010255	ENSGT00390000001455	ENSGT00940000155331.A	ENSGT00390000005586	ENSGT00940000161762	ENSGT00940000159827	ENSGT00940000156503.c	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00390000011072	ENSGT00390000015821	ENSGT00530000063186.b.a
Turkey	MODERN SPECIES	26	PDE1C (ENSMGAG00000012120)	PPP1R17 (ENSMGAG00000012140)	ITPRID1 (ENSMGAG00000018892)	NEUROD6 (ENSMGAG00000012144)	ITGA9 (ENSMGAG00000012147)	ENSMGAG00000012166	LRRFIP2 (ENSMGAG00000012175)	ENSMGAG00000023004	ENSMGAG00000012187	ENSMGAG00000019487	ENSMGAG00000012196	VPS41 (ENSMGAG00000012204) #20	ENSMGAG00000017948 #21	ENSMGAG00000022796 #21	ENSMGAG00000012235 #21	YAE1 (ENSMGAG00000012240) #22	ENSMGAG00000018557	RALA (ENSMGAG00000012244)	ENSMGAG00000012248	SUGCT (ENSMGAG00000016958)	INHBA (ENSMGAG00000012273)	GLI3 (ENSMGAG00000012277) #36	C7orf25 (ENSMGAG00000015903)	PSMA2 (ENSMGAG00000012294)	MRPL32 (ENSMGAG00000012299)	HECW1 (ENSMGAG00000012302)	STK17A (ENSMGAG00000012311)	BLVRA (ENSMGAG00000012314)	VOPP1 (ENSMGAG00000019269)	LANCL2 (ENSMGAG00000012323)	EGFR (ENSMGAG00000012330)
Chicken	MODERN SPECIES	11	ENSGALG00010017769	ENSGALG00010017777	ENSGALG00010017784	ENSGALG00010017788	ENSGALG00010017794	ENSGALG00010017800	TRGV9 (ENSGALG00010017802)	ENSGALG00010017827	ENSGALG00010017840	ENSGALG00010017854	ENSGALG00010017624	ENSGALG00010017618	AMPH (ENSGALG00010017970)	VPS41 (ENSGALG00010016583) #20	POU6F2 (ENSGALG00010016637) #21	YAE1 (ENSGALG00010017824) #22	ENSGALG00010017833	RALA (ENSGALG00010017866)	CDK13 (ENSGALG00010017880)	MPLKIP (ENSGALG00010017888)	SUGCT (ENSGALG00010018049)	INHBA (ENSGALG00010007868)	GLI3 (ENSGALG00010007884) #36	C2H7orf25 (ENSGALG00010007902)	PSMA2 (ENSGALG00010007903)	ENSGALG00010007904	MRPL32 (ENSGALG00010007905)	HECW1 (ENSGALG00010007915)	STK17A (ENSGALG00010007925)	BLVRA (ENSGALG00010007133)	ENSGALG00010007145
Japanese quail	MODERN SPECIES	11	HERPUD2 (ENSCJPG00005006731)	SEPTIN7 (ENSCJPG00005006717)	ENSCJPG00005006662	ENSCJPG00005006548	GOLGA4 (ENSCJPG00005006522)	LRRFIP2 (ENSCJPG00005006441)	ENSCJPG00005006436	ENSCJPG00005006435	ENSCJPG00005006434	ENSCJPG00005006429	ENSCJPG00005006427	ENSCJPG00005006420	AMPH (ENSCJPG00005006395)	VPS41 (ENSCJPG00005006272) #20	POU6F2 (ENSCJPG00005006245) #21	YAE1 (ENSCJPG00005006226) #22	ENSCJPG00005006220	RALA (ENSCJPG00005006219)	CDK13 (ENSCJPG00005006217)	MPLKIP (ENSCJPG00005006216)	SUGCT (ENSCJPG00005006209)	INHBA (ENSCJPG00005006189)	GLI3 (ENSCJPG00005006179) #36	EZH2 (ENSCJPG00005006124)	CUL1 (ENSCJPG00005006103) #7	CNTNAP2 (ENSCJPG00005000658) ##9	TPK1 (ENSCJPG00005000332)	C7orf25 (ENSCJPG00005000320)	PSMA2 (ENSCJPG00005000303)	MRPL32 (ENSCJPG00005000292)	HECW1 (ENSCJPG00005000252)
Neognathae_b	ANCESTRAL SPECIES	3	ENSGT00390000001455	ENSGT00940000155331.A	ENSGT00390000005586	ENSGT00940000161762	ENSGT00940000159827	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153143.a.b.a.a.a	ENSGT00940000153143.a.b.a.a.b	ENSGT00960000189317	ENSGT00940000153143.a.b.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Passeriformes	ANCESTRAL SPECIES		ENSGT00940000157657	ENSGT00940000155331.A	ENSGT00390000005586	ENSGT00940000159827	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153143.a.b.a.a.a	ENSGT00940000153143.a.b.a.a.b	ENSGT00960000189317	ENSGT00960000190022	ENSGT00940000153143.a.b.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Great tit	MODERN SPECIES	11	VPS41 (ENSPMJG00000018123) #20	AMPH (ENSPMJG00000018122)	ENSPMJG00000018121	ENSPMJG00000018120	ENSPMJG00000018067	LRRFIP2 (ENSPMJG00000018066)	GOLGA4 (ENSPMJG00000018065)	ITGA9 (ENSPMJG00000018064)	NEUROD6 (ENSPMJG00000018063)	ENSPMJG00000018062	PDE1C (ENSPMJG00000018061)	ENSPMJG00000018060	NFX1 (ENSPMJG00000018059)	ENSPMJG00000018057	HUS1 (ENSPMJG00000018055)	YAE1 (ENSPMJG00000018053) #22	ENSPMJG00000018052	RALA (ENSPMJG00000018050)	CDK13 (ENSPMJG00000018048)	MPLKIP (ENSPMJG00000018047)	SUGCT (ENSPMJG00000018046)	INHBA (ENSPMJG00000018042)	GLI3 (ENSPMJG00000018041) #36	C7orf25 (ENSPMJG00000018040)	PSMA2 (ENSPMJG00000018039)	MRPL32 (ENSPMJG00000018038)	TNS3 (ENSPMJG00000018037)	COA1 (ENSPMJG00000018036)	STK17A (ENSPMJG00000018035)	HECW1 (ENSPMJG00000018034)	BLVRA (ENSPMJG00000018033)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00940000156325	ENSGT00940000157657	ENSGT00940000155331.A	ENSGT00390000005586	ENSGT00940000159827	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153143.a.b.a.a.b	ENSGT00960000189317	ENSGT00960000190022	ENSGT00940000153143.a.b.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT01030000235253.d.b	ENSGT00390000011072
Flycatcher	MODERN SPECIES	11	HUS1 (ENSFALG00000013176)	ENSFALG00000026671	ENSFALG00000013143	ENSFALG00000013128	PPP1R17 (ENSFALG00000023160)	PDE1C (ENSFALG00000013120)	ENSFALG00000014089	ITGA9 (ENSFALG00000013091)	ENSFALG00000013077	LRRFIP2 (ENSFALG00000012219)	ENSFALG00000023119	ENSFALG00000012205	AMPH (ENSFALG00000012192)	VPS41 (ENSFALG00000005238) #20	POU6F2 (ENSFALG00000005224) #21	YAE1 (ENSFALG00000027550) #22	ENSFALG00000025369	RALA (ENSFALG00000027253)	CDK13 (ENSFALG00000005143)	MPLKIP (ENSFALG00000027312)	SUGCT (ENSFALG00000005131)	INHBA (ENSFALG00000005123)	GLI3 (ENSFALG00000005113) #36	C7orf25 (ENSFALG00000014114)	PSMA2 (ENSFALG00000005082)	MRPL32 (ENSFALG00000027975)	HECW1 (ENSFALG00000005053)	STK17A (ENSFALG00000028529)	COA1 (ENSFALG00000005023)	ENSFALG00000025406	ENSFALG00000024388
Passeriformes_g	ANCESTRAL SPECIES	6						ENSGT00940000159827	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00960000189447	ENSGT00960000189317	ENSGT00960000190022	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT01030000235253.d.b	ENSGT00390000011072
Medium ground finch	MODERN SPECIES	96												AMPH (ENSGFOG00000005869)	VPS41 (ENSGFOG00000005873) #20	ENSGFOG00000005884	POU6F2 (ENSGFOG00000005890) #21	YAE1 (ENSGFOG00000005898) #22	RALA (ENSGFOG00000005906)	ENSGFOG00000005913	ENSGFOG00000005917	SUGCT (ENSGFOG00000005923)	INHBA (ENSGFOG00000005930)	GLI3 (ENSGFOG00000005932) #36	C7orf25 (ENSGFOG00000005939)	PSMA2 (ENSGFOG00000005943)	MRPL32 (ENSGFOG00000005947)	HECW1 (ENSGFOG00000006006)	STK17A (ENSGFOG00000006349)	COA1 (ENSGFOG00000006359)	BLVRA (ENSGFOG00000006368)	VOPP1 (ENSGFOG00000006377)	LANCL2 (ENSGFOG00000006387)
Passeroidea	ANCESTRAL SPECIES	6						ENSGT00940000159827	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00960000189447	ENSGT00960000189317	ENSGT00960000190022	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT01030000235253.d.b	ENSGT00390000011072
Common canary	MODERN SPECIES	75														VPS41 (ENSSCAG00000016765) #20	POU6F2 (ENSSCAG00000016770) #21	YAE1 (ENSSCAG00000016776) #22	RALA (ENSSCAG00000016777)	AMPH (ENSSCAG00000016806)	ENSSCAG00000016822	ENSSCAG00000016824	ENSSCAG00000016825	ENSSCAG00000016826	LRRFIP2 (ENSSCAG00000016829)	GOLGA4 (ENSSCAG00000016833)	ITGA9 (ENSSCAG00000016844)
Zebra finch	MODERN SPECIES	12	MC4R (ENSTGUG00000027462)	C5orf22 (ENSTGUG00000001970)	DROSHA (ENSTGUG00000001955)	CDH6 (ENSTGUG00000001940)	CDH9 (ENSTGUG00000001934)	CDH10 (ENSTGUG00000001926)	CDH12 (ENSTGUG00000001914)	NEUROD6 (ENSTGUG00000001910)	ITGA9 (ENSTGUG00000001897)	GOLGA4 (ENSTGUG00000001889)	LRRFIP2 (ENSTGUG00000001878)	ENSTGUG00000001876	AMPH (ENSTGUG00000001869)	VPS41 (ENSTGUG00000001860) #20	POU6F2 (ENSTGUG00000001859) #21	YAE1 (ENSTGUG00000020380) #22	ENSTGUG00000001857	RALA (ENSTGUG00000001854)	CDK13 (ENSTGUG00000001850)	MPLKIP (ENSTGUG00000001848)	ENSTGUG00000025137	SUGCT (ENSTGUG00000001844)	INHBA (ENSTGUG00000001843)	GLI3 (ENSTGUG00000001834) #36	C7orf25 (ENSTGUG00000001831)	PSMA2 (ENSTGUG00000001827)	MRPL32 (ENSTGUG00000001824)	HECW1 (ENSTGUG00000001817)	STK17A (ENSTGUG00000029061)	COA1 (ENSTGUG00000022951)	ENSTGUG00000021649
Neognathae_c	ANCESTRAL SPECIES	1	ENSGT00940000156069	ENSGT00390000010255	ENSGT00390000001455	ENSGT00940000155331.A	ENSGT00390000005586	ENSGT00940000161762	ENSGT00940000159827	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153143.a.b.a.a.b	ENSGT00960000189317	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Kakapo	MODERN SPECIES		ENSSHBG00005017189	ENSSHBG00005017187	LSM5 (ENSSHBG00005017180)	PDE1C (ENSSHBG00005011595)	PPP1R17 (ENSSHBG00005010967)	ITPRID1 (ENSSHBG00005010923)	NEUROD6 (ENSSHBG00005010889)	ITGA9 (ENSSHBG00005010802)	GOLGA4 (ENSSHBG00005010661)	LRRFIP2 (ENSSHBG00005010595)	ENSSHBG00005010565	ENSSHBG00005010323	AMPH (ENSSHBG00005010255)	VPS41 (ENSSHBG00005010160) #20	POU6F2 (ENSSHBG00005010129) #21	YAE1 (ENSSHBG00005010111) #22	RALA (ENSSHBG00005010092)	CDK13 (ENSSHBG00005010070)	MPLKIP (ENSSHBG00005010053)	SUGCT (ENSSHBG00005010027)	INHBA (ENSSHBG00005010004)	ENSSHBG00005009976	ENSSHBG00005009956	ENSSHBG00005009929 #36	ENSSHBG00005009918 #36	C7orf25 (ENSSHBG00005009911)	PSMA2 (ENSSHBG00005009895)	MRPL32 (ENSSHBG00005000086)	HECW1 (ENSSHBG00005000081)	STK17A (ENSSHBG00005000074)	COA1 (ENSSHBG00005000068)
Golden eagle	MODERN SPECIES	19	ENSACCG00020006380	SH3BP5 (ENSACCG00020006371)	CAPN7 (ENSACCG00020006334)	PDE1C (ENSACCG00020005818)	PPP1R17 (ENSACCG00020005253)	NEUROD6 (ENSACCG00020005245)	ENSACCG00020005241	ITGA9 (ENSACCG00020005192)	GOLGA4 (ENSACCG00020005089)	LRRFIP2 (ENSACCG00020005021)	TRGV9 (ENSACCG00020004981)	ENSACCG00020004904	AMPH (ENSACCG00020004821)	VPS41 (ENSACCG00020004789) #20	POU6F2 (ENSACCG00020004747) #21	YAE1 (ENSACCG00020004724) #22	ENSACCG00020004712	RALA (ENSACCG00020004699)	CDK13 (ENSACCG00020004693)	MPLKIP (ENSACCG00020004525)	SUGCT (ENSACCG00020004494)	INHBA (ENSACCG00020004471)	GLI3 (ENSACCG00020004461) #36	C7orf25 (ENSACCG00020004448)	PSMA2 (ENSACCG00020004444)	MRPL32 (ENSACCG00020004436)	HECW1 (ENSACCG00020004403)	STK17A (ENSACCG00020004387)	COA1 (ENSACCG00020004380)	BLVRA (ENSACCG00020004370)	VOPP1 (ENSACCG00020004361)
African ostrich	MODERN SPECIES	767											ENSSCUG00000011874	ENSSCUG00000011873	AMPH (ENSSCUG00000011855)	VPS41 (ENSSCUG00000011848) #20	POU6F2 (ENSSCUG00000011841) #21	YAE1 (ENSSCUG00000011840) #22	RALA (ENSSCUG00000011839)	CDK13 (ENSSCUG00000011837)	SUGCT (ENSSCUG00000011834)	INHBA (ENSSCUG00000011831)	GLI3 (ENSSCUG00000011829) #36	C7orf25 (ENSSCUG00000011826)	PSMA2 (ENSSCUG00000011825)	MRPL32 (ENSSCUG00000011824)	HECW1 (ENSSCUG00000011817)	STK17A (ENSSCUG00000011807)	COA1 (ENSSCUG00000011805)	BLVRA (ENSSCUG00000011803)	VOPP1 (ENSSCUG00000011801)	LANCL2 (ENSSCUG00000011800)	EGFR (ENSSCUG00000011799)
Lepidosauria	ANCESTRAL SPECIES	5	ENSGT00390000017671.a	ENSGT00940000154222.d.b	ENSGT00390000009677	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00390000008427	ENSGT00940000155994.`b	ENSGT01030000234518.E.c.a	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Episquamata	ANCESTRAL SPECIES	5	ENSGT00390000011072	ENSGT00940000161552	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722	ENSGT00960000190657	ENSGT00940000155925 #36	ENSGT00940000157116	ENSGT00940000157866	ENSGT00390000002582	ENSGT00940000157852	ENSGT00940000155142	ENSGT00390000011176 #22	ENSGT00940000156175 #21	ENSGT00390000000481 #20	ENSGT00950000182882.A.b.a	ENSGT00940000155476	ENSGT00940000161910	ENSGT00940000160766	ENSGT00940000161182	ENSGT01030000234518.E.c.a	ENSGT00940000155994.`b	ENSGT00390000008427	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00390000017671.a
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00390000011072	ENSGT00940000161552	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722	ENSGT00960000190657	ENSGT00940000155925 #36	ENSGT00940000157116	ENSGT00940000157866	ENSGT00390000002582	ENSGT00940000157852	ENSGT00940000155142	ENSGT00390000011176 #22	ENSGT00940000156175 #21	ENSGT00390000000481 #20	ENSGT00950000182882.A.b.a	ENSGT00940000155476	ENSGT00940000161910	ENSGT00940000160766	ENSGT00940000161182	ENSGT00940000155994.`b	ENSGT00940000155994.ab	ENSGT00390000008427	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00390000017671.a
Lizard	DUPLICATION
Lizard	MODERN SPECIES	5	STK17A (ENSACAG00000017481)	ENSACAG00000039276	ENSACAG00000041080	HECW1 (ENSACAG00000017492)	MRPL32 (ENSACAG00000045596)	PSMA2 (ENSACAG00000017511)	GLI3 (ENSACAG00000017547) #36	INHBA (ENSACAG00000017576)	ENSACAG00000038360	ENSACAG00000045115	ENSACAG00000042768	SUGCT (ENSACAG00000017581)	MPLKIP (ENSACAG00000017596)	ENSACAG00000017597	RALA (ENSACAG00000017605)	YAE1 (ENSACAG00000039349) #22	POU6F2 (ENSACAG00000017612) #21	VPS41 (ENSACAG00000017617) #20	AMPH (ENSACAG00000017651)	STARD3NL (ENSACAG00000017658)	EPDR1 (ENSACAG00000017665)	SFRP4 (ENSACAG00000043956)	ENSACAG00000017678	ENSACAG00000035786	GPR141 (ENSACAG00000037026)	ENSACAG00000043399	ENSACAG00000044595	ENSACAG00000017690	ENSACAG00000041833	ENSACAG00000042081	AOAH (ENSACAG00000021042)
Lizard	MODERN SPECIES	803	DUS2 (ENSACAG00000009757)	NFATC3 (ENSACAG00000009839)	ESRP2 (ENSACAG00000009900)	ENSACAG00000009959	PLA2G15 (ENSACAG00000009961)	SMPD3 (ENSACAG00000010068)	PRMT7 (ENSACAG00000010119)	SLC7A6OS (ENSACAG00000010238)	ENSACAG00000044839	SLC7A6 (ENSACAG00000010249)	ENSACAG00000010464	ENSACAG00000022434	OSGIN1 (ENSACAG00000043802)	ENSACAG00000000883	ENSACAG00000014921	ENSACAG00000045133 #22	ENSACAG00000037782	ENSACAG00000036811	CDH11 (ENSACAG00000015087)	ENSACAG00000039656	ENSACAG00000028252	ENSACAG00000040850	ENSACAG00000042140	CDH5 (ENSACAG00000000593)
Elapidae	ANCESTRAL SPECIES	5	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722	ENSGT00960000190657	ENSGT00940000155925 #36	ENSGT00940000157116.c	ENSGT00940000157866	ENSGT00390000002582	ENSGT00940000157852	ENSGT00940000155142	ENSGT00390000011176 #22	ENSGT00940000156175 #21	ENSGT00390000000481.c #20	ENSGT00950000182882.A.b.a	ENSGT00940000155476	ENSGT00940000161910	ENSGT00940000160766	ENSGT00940000161182	ENSGT00940000155994.`b	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00390000017671.a	ENSGT00940000158741	ENSGT00530000063023.B
Indian cobra	MODERN SPECIES	337	STK17A (ENSNNAG00000016944)	HECW1 (ENSNNAG00000016919)	ENSNNAG00000016899	ENSNNAG00000016905	PSMA2 (ENSNNAG00000016886)	C7orf25 (ENSNNAG00000016877)	ENSNNAG00000016871	ENSNNAG00000016864 #36	ENSNNAG00000016808 #36	ENSNNAG00000016795	INHBA (ENSNNAG00000016787)	SUGCT (ENSNNAG00000016772)	MPLKIP (ENSNNAG00000016769)	CDK13 (ENSNNAG00000016699)	RALA (ENSNNAG00000016685)	ENSNNAG00000016677 #22	POU6F2 (ENSNNAG00000016626) #21	ENSNNAG00000016613	ENSNNAG00000016605	ENSNNAG00000016597 #20	ENSNNAG00000016573 #20	AMPH (ENSNNAG00000016556)	STARD3NL (ENSNNAG00000016543)	EPDR1 (ENSNNAG00000016541)	SFRP4 (ENSNNAG00000016535)	NME8 (ENSNNAG00000016510)	ENSNNAG00000016505	ELMO1 (ENSNNAG00000016290)	ANLN (ENSNNAG00000016043)	MATCAP2 (ENSNNAG00000015988)	EEPD1 (ENSNNAG00000015981)
Elapidae_a	ANCESTRAL SPECIES	40	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722	ENSGT00940000155925 #36	ENSGT00940000157116.c	ENSGT00940000157866	ENSGT00390000002582	ENSGT00940000157852	ENSGT00940000155142	ENSGT00390000011176 #22	ENSGT00940000156175 #21	ENSGT00390000000481.c #20	ENSGT00950000182882.A.b.a	ENSGT00940000155476	ENSGT00940000161910	ENSGT00940000160766	ENSGT00940000161182	ENSGT00940000155994.`b	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00390000017671.a	ENSGT00940000158741	ENSGT00530000063023.B
Blue-lipped sea krait	MODERN SPECIES	9855																ENSLLTG00000017503 #22
Acanthophiinae	ANCESTRAL SPECIES	41	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722	ENSGT00940000155925 #36	ENSGT00940000157116.c	ENSGT00940000157866	ENSGT00390000002582	ENSGT00940000157852	ENSGT00940000155142	ENSGT00390000011176 #22	ENSGT00940000156175 #21	ENSGT00390000000481.c #20	ENSGT00950000182882.A.b.a	ENSGT00940000155476	ENSGT00940000161910	ENSGT00940000160766	ENSGT00940000161182	ENSGT00940000155994.`b	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00390000017671.a	ENSGT00940000158741	ENSGT00530000063023.B
Mainland tiger snake	MODERN SPECIES	66											ENSNSUG00000010354	SUGCT (ENSNSUG00000010355)	MPLKIP (ENSNSUG00000010364)	CDK13 (ENSNSUG00000010365)	RALA (ENSNSUG00000010367)	ENSNSUG00000010368 #22	POU6F2 (ENSNSUG00000010370) #21	VPS41 (ENSNSUG00000010376) #20	AMPH (ENSNSUG00000010522)	STARD3NL (ENSNSUG00000010524)	EPDR1 (ENSNSUG00000010528)	SFRP4 (ENSNSUG00000010529)	NME8 (ENSNSUG00000010530)	ELMO1 (ENSNSUG00000010531)	ANLN (ENSNSUG00000010539)	MATCAP2 (ENSNSUG00000010841)	EEPD1 (ENSNSUG00000010900)	SEPTIN7 (ENSNSUG00000010901)	ENSNSUG00000010903	HERPUD2 (ENSNSUG00000010904)	TBX20 (ENSNSUG00000010907)
Eastern brown snake	MODERN SPECIES	18	ENSPTXG00000001621	ENSPTXG00000001618	ENSPTXG00000001615	ENSPTXG00000001613	ENSPTXG00000001610	ENSPTXG00000001608	GLI3 (ENSPTXG00000001606) #36	ENSPTXG00000001602	ENSPTXG00000001599	ENSPTXG00000001595	SUGCT (ENSPTXG00000001594)	MPLKIP (ENSPTXG00000001593)	CDK13 (ENSPTXG00000001591)	ENSPTXG00000001589	RALA (ENSPTXG00000001587)	ENSPTXG00000001585 #22	POU6F2 (ENSPTXG00000001581) #21	ENSPTXG00000001576	VPS41 (ENSPTXG00000001571) #20	AMPH (ENSPTXG00000001568)	ENSPTXG00000001567	STARD3NL (ENSPTXG00000001565)	EPDR1 (ENSPTXG00000001562)	SFRP4 (ENSPTXG00000001554)	NME8 (ENSPTXG00000001550)	ENSPTXG00000001544	ELMO1 (ENSPTXG00000000925)	ANLN (ENSPTXG00000000893)	MATCAP2 (ENSPTXG00000000873)	EEPD1 (ENSPTXG00000000872)	SEPTIN7 (ENSPTXG00000000871)
Laterata	ANCESTRAL SPECIES	39	ENSGT00390000015821	ENSGT00390000011072	ENSGT00940000161552	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722	ENSGT00940000155925 #36	ENSGT00940000157116	ENSGT00940000157866	ENSGT00390000002582	ENSGT00940000157852	ENSGT00940000155142	ENSGT00390000011176 #22	ENSGT00940000156175 #21	ENSGT00390000000481 #20	ENSGT00950000182882.A.b.a	ENSGT00940000155476	ENSGT00940000161910	ENSGT00940000160766	ENSGT00940000161182	ENSGT01030000234518.E.c.a	ENSGT00940000155994.`b	ENSGT00390000008427	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00390000017671.a
Common wall lizard	MODERN SPECIES	3	COA1 (ENSPMRG00000016416)	STK17A (ENSPMRG00000016409)	HECW1 (ENSPMRG00000016147)	ENSPMRG00000016069	ENSPMRG00000016068	ENSPMRG00000016061	ENSPMRG00000016054	PSMA2 (ENSPMRG00000016045)	C7orf25 (ENSPMRG00000016040)	GLI3 (ENSPMRG00000016011) #36	INHBA (ENSPMRG00000016000)	SUGCT (ENSPMRG00000015882)	MPLKIP (ENSPMRG00000015844)	CDK13 (ENSPMRG00000015785)	RALA (ENSPMRG00000015762)	YAE1 (ENSPMRG00000015754) #22	POU6F2 (ENSPMRG00000015743) #21	VPS41 (ENSPMRG00000015677) #20	ENSPMRG00000015546	STARD3NL (ENSPMRG00000015515)	EPDR1 (ENSPMRG00000015506)	ENSPMRG00000015500	NME8 (ENSPMRG00000015486)	ENSPMRG00000015482	ENSPMRG00000015477	ENSPMRG00000015471	ELMO1 (ENSPMRG00000015324)	AOAH (ENSPMRG00000015286)	ANLN (ENSPMRG00000015224)	MATCAP2 (ENSPMRG00000015201)	EEPD1 (ENSPMRG00000015195)
tuatara	MODERN SPECIES	1137															ENSSPUG00000014276 #21	YAE1 (ENSSPUG00000014295) #22	RALA (ENSSPUG00000014308)	ENSSPUG00000014322	MPLKIP (ENSSPUG00000014336)	SUGCT (ENSSPUG00000014343)
Mammalia	ANCESTRAL SPECIES	4	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Platypus	MODERN SPECIES	15	ENSOANG00000040608	RPL12 (ENSOANG00000013186)	LRSAM1 (ENSOANG00000009706)	NIBAN2 (ENSOANG00000009704)	ENSOANG00000049305	ENSOANG00000000414	MTBP (ENSOANG00000008087)	ENSOANG00000041456	FAM83H (ENSOANG00000045011)	ENSOANG00000044523	ENSOANG00000041687	NRBP2 (ENSOANG00000012722)	ENSOANG00000041942	CDK13 (ENSOANG00000012799)	RALA (ENSOANG00000009445)	YAE1 (ENSOANG00000009446) #22	ENSOANG00000009447	ENSOANG00000020871	ENSOANG00000002006	ENSOANG00000012963	ENSOANG00000001528	ZNF618 (ENSOANG00000005539)	ENSOANG00000049054	ENSOANG00000015666	C8orf76 (ENSOANG00000015667)	ZHX1 (ENSOANG00000047134)	SEMA4F (ENSOANG00000041234)	ENSOANG00000043000	ENSOANG00000046245	LOXL3 (ENSOANG00000037966)	ENSOANG00000043231
Theria	ANCESTRAL SPECIES		ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Boreoeutheria	ANCESTRAL SPECIES	13	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.a.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00950000185265	ENSGT00940000153143.a.b.b.a.b.d.b.b	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.f	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.e.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.a.a.a	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
Euarchontoglires	ANCESTRAL SPECIES	13	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.a.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00950000185265	ENSGT00940000153143.a.b.b.a.b.d.b.b	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
Primates	ANCESTRAL SPECIES	12	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.a.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00950000185265	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
Strepsirrhini	ANCESTRAL SPECIES	9	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00390000008427	ENSGT00940000155994.nb	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.a.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294.b	ENSGT00900000143452	ENSGT00940000158294.a	ENSGT00940000154014.a	ENSGT00440000033985
Lemuriformes	ANCESTRAL SPECIES	4	ENSGT00390000008749.e	ENSGT00390000008427	ENSGT00940000155994.nb	ENSGT00940000155994.ob	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.a.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294.b	ENSGT00900000143452	ENSGT00940000158294.a	ENSGT00940000154014.a	ENSGT00440000033985
Mouse lemur	MODERN SPECIES	2	PGAM2 (ENSMICG00000013345)	DBNL (ENSMICG00000013311)	ENSMICG00000013289	URGCP (ENSMICG00000030783)	MRPS24 (ENSMICG00000043303)	BLVRA (ENSMICG00000007284)	COA1 (ENSMICG00000013834)	STK17A (ENSMICG00000047496)	ENSMICG00000047051	HECW1 (ENSMICG00000001053)	ENSMICG00000045915	PSMA2 (ENSMICG00000017286)	C7orf25 (ENSMICG00000017285)	GLI3 (ENSMICG00000010785) #36	INHBA (ENSMICG00000033429)	YAE1 (ENSMICG00000042079) #22	SUGCT (ENSMICG00000010769)	MPLKIP (ENSMICG00000037623)	CDK13 (ENSMICG00000044449)	RALA (ENSMICG00000038516)	ENSMICG00000012521	POU6F2 (ENSMICG00000007361) #21	VPS41 (ENSMICG00000005036) #20	AMPH (ENSMICG00000013941)	ENSMICG00000044287	ENSMICG00000029905	ENSMICG00000000945	EPDR1 (ENSMICG00000001946)	SFRP4 (ENSMICG00000026727)	NME8 (ENSMICG00000001938)	ELMO1 (ENSMICG00000008990)
Lemuriformes_a	ANCESTRAL SPECIES	94													ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294.b	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000011179
Coquerels sifaka	MODERN SPECIES	593															POU6F2 (ENSPCOG00000022128) #21	YAE1 (ENSPCOG00000012495) #22	RALA (ENSPCOG00000018071)	ENSPCOG00000028359	CDK13 (ENSPCOG00000020869)	MPLKIP (ENSPCOG00000007076)	SUGCT (ENSPCOG00000023610)	INHBA (ENSPCOG00000021472)	GLI3 (ENSPCOG00000002002) #36
Greater bamboo lemur	MODERN SPECIES	144														ENSPSMG00000022245 #20	POU6F2 (ENSPSMG00000022234) #21	YAE1 (ENSPSMG00000022220) #22	RALA (ENSPSMG00000022210)	ENSPSMG00000022207	CDK13 (ENSPSMG00000022180)	MPLKIP (ENSPSMG00000022140)	SUGCT (ENSPSMG00000022134)	INHBA (ENSPSMG00000022111)
Bushbaby	MODERN SPECIES	234												AMPH (ENSOGAG00000000682)	VPS41 (ENSOGAG00000000684) #20	POU6F2 (ENSOGAG00000033061) #21	ENSOGAG00000030149	YAE1 (ENSOGAG00000010241) #22	RALA (ENSOGAG00000010244)	ENSOGAG00000010247	MPLKIP (ENSOGAG00000014138)	ENSOGAG00000025676	INHBA (ENSOGAG00000003846)	GLI3 (ENSOGAG00000012651) #36	C7orf25 (ENSOGAG00000016804)	PSMA2 (ENSOGAG00000016805)	MRPL32 (ENSOGAG00000016806)	HECW1 (ENSOGAG00000013436)	STK17A (ENSOGAG00000033031)	COA1 (ENSOGAG00000006944)	BLVRA (ENSOGAG00000001591)	MRPS24 (ENSOGAG00000001593)	URGCP (ENSOGAG00000001595)
Haplorrhini	ANCESTRAL SPECIES	8	ENSGT01030000234518.E.c.a	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.a.b	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00950000185265	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870.b.nc	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
Simiiformes	ANCESTRAL SPECIES	12	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.a.b	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00950000185265	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000006224.i.b	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870.b.nc	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
Platyrrhini	ANCESTRAL SPECIES	10	ENSGT00940000155994	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000164413	ENSGT00940000155476	ENSGT01060000248976	ENSGT00940000153143.a.b.b.a.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000006224.i.b	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155959.m.a	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722.c	ENSGT00550000074870.b.nc	ENSGT00390000014996	ENSGT00530000063426.b.b.b	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985
Cebidae	ANCESTRAL SPECIES	9	ENSGT00910000147859	ENSGT00390000008427	ENSGT00940000155994	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000164413	ENSGT00940000155476	ENSGT01060000248976	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000006224.i.b	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155959.m.a	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722.c	ENSGT00550000074870.b.nc	ENSGT00390000014996	ENSGT00910000144211.n.b	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985
Marmoset	MODERN SPECIES	20	NME8 (ENSCJAG00000012554)	SFRP4 (ENSCJAG00000069938)	EPDR1 (ENSCJAG00000012617)	ENSCJAG00000081501	ENSCJAG00000040400	ENSCJAG00000085013	ENSCJAG00000012635	TRGV9 (ENSCJAG00000044374)	ENSCJAG00000075352	AMPH (ENSCJAG00000012658)	ENSCJAG00000085472	ENSCJAG00000012684	VPS41 (ENSCJAG00000012686) #20	POU6F2 (ENSCJAG00000007618) #21	ENSCJAG00000074718	YAE1 (ENSCJAG00000041871) #22	RALA (ENSCJAG00000039772)	ENSCJAG00000077034	CDK13 (ENSCJAG00000007641)	MPLKIP (ENSCJAG00000007653)	SUGCT (ENSCJAG00000007656)	INHBA (ENSCJAG00000007682)	GLI3 (ENSCJAG00000007690) #36	C7orf25 (ENSCJAG00000007729)	PSMA2 (ENSCJAG00000039517)	MRPL32 (ENSCJAG00000007749)	ENSCJAG00000062733	ENSCJAG00000082260	HECW1 (ENSCJAG00000007768)	ENSCJAG00000078337	STK17A (ENSCJAG00000007799)
Cebidae_a	ANCESTRAL SPECIES	7	ENSGT00390000008749.e	ENSGT00910000147859	ENSGT00390000008427	ENSGT00940000155994	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000164413	ENSGT00940000155476	ENSGT01060000248976	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000006224.i.b	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155959.m.a	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722.c	ENSGT00550000074870.b.nc	ENSGT00390000014996	ENSGT00910000144211.n.b	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985
Capuchin	MODERN SPECIES	349															POU6F2 (ENSCCAG00000029778) #21	YAE1 (ENSCCAG00000028248) #22	RALA (ENSCCAG00000029848)	CDK13 (ENSCCAG00000032800)	MPLKIP (ENSCCAG00000023596)	SUGCT (ENSCCAG00000031138)
Bolivian squirrel monkey	MODERN SPECIES	82	ANLN (ENSSBOG00000026014)	ENSSBOG00000011698	AOAH (ENSSBOG00000035205)	ELMO1 (ENSSBOG00000030050)	NME8 (ENSSBOG00000023157)	SFRP4 (ENSSBOG00000030016)	EPDR1 (ENSSBOG00000033388)	ENSSBOG00000024726	ENSSBOG00000026023	ENSSBOG00000019808	ENSSBOG00000020164	AMPH (ENSSBOG00000026809)	ENSSBOG00000030272	VPS41 (ENSSBOG00000033706) #20	POU6F2 (ENSSBOG00000029519) #21	YAE1 (ENSSBOG00000032607) #22	ENSSBOG00000032600	RALA (ENSSBOG00000021115)	ENSSBOG00000031315	MPLKIP (ENSSBOG00000003418)	SUGCT (ENSSBOG00000030111)	INHBA (ENSSBOG00000021061)	GLI3 (ENSSBOG00000020504) #36	ENSSBOG00000033820	PSMA2 (ENSSBOG00000019977)	MRPL32 (ENSSBOG00000029277)	ENSSBOG00000023091	ENSSBOG00000031237	HECW1 (ENSSBOG00000022224)	STK17A (ENSSBOG00000022665)	COA1 (ENSSBOG00000023098)
Mas night monkey	MODERN SPECIES	1103	LMOD3 (ENSANAG00000020335)	ARL6IP5 (ENSANAG00000021456)	ENSANAG00000035877	TMF1 (ENSANAG00000037546)	EOGT (ENSANAG00000030876)	TAFA4 (ENSANAG00000020763)	TAFA1 (ENSANAG00000028819)	SUCLG2 (ENSANAG00000033664)	KBTBD8 (ENSANAG00000032012)	LRIG1 (ENSANAG00000020533)	SLC25A26 (ENSANAG00000034578)	AMPH (ENSANAG00000023088)	ENSANAG00000001067	VPS41 (ENSANAG00000027607) #20	POU6F2 (ENSANAG00000032939) #21	YAE1 (ENSANAG00000037569) #22	ENSANAG00000022924	RALA (ENSANAG00000030583)	CDK13 (ENSANAG00000019746)	MPLKIP (ENSANAG00000035918)	SUGCT (ENSANAG00000025338)	INHBA (ENSANAG00000022627)	GLI3 (ENSANAG00000033410) #36	C7orf25 (ENSANAG00000029268)	PSMA2 (ENSANAG00000038426)	MRPL32 (ENSANAG00000036260)	ENSANAG00000025842	HECW1 (ENSANAG00000033887)	STK17A (ENSANAG00000034563)	COA1 (ENSANAG00000038164)	BLVRA (ENSANAG00000021982)
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.a.b	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.a.c.b	ENSGT00940000153143.a.a.e.b	ENSGT00940000153143.a.a.e.a.c.a	ENSGT00950000182882.A.b.a	ENSGT00390000006224.i.b	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142.j	ENSGT01040000241441	ENSGT00940000155142.i.b	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00550000074878.`b.b	ENSGT00390000014722	ENSGT00550000074870.b.nc	ENSGT00390000014996.y	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00940000153143.a.b.b.a.a.a.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.a.c.b	ENSGT00940000153143.a.a.e.b	ENSGT00940000153143.a.a.e.a.c.a	ENSGT00950000182882.A.b.a	ENSGT00390000006224.i.b	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155959.l	ENSGT01040000241441	ENSGT00940000155142.i.b	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00550000074878.`b.b	ENSGT00390000014722	ENSGT00550000074870.b.nc	ENSGT00390000014996.y	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a
Hominidae	ANCESTRAL SPECIES	11	ENSGT01030000234518.E.c.a	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00940000153143.a.b.b.a.a.a.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.a.d	ENSGT00940000153143.a.a.e.a.c.a	ENSGT00950000182882.A.b.a	ENSGT00390000006224.i.b	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155959.l	ENSGT01040000241441	ENSGT00940000155142.i.b	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00550000074878.`b.b	ENSGT00390000014722	ENSGT00550000074870.b.nc	ENSGT00390000014996.y	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	25	ENSGT00390000009359.a.h	ENSGT01030000234518.E.c.a	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000164413	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.a.a.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.a.d	ENSGT00940000153143.a.a.e.a.c.a	ENSGT00950000182882.A.b.a	ENSGT00390000006224.i.b	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155959.l	ENSGT01040000241441	ENSGT00940000155142.i.b	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00550000074878.`b.b	ENSGT00390000014722	ENSGT00550000074870.b.nc	ENSGT00390000014996.y	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a
Homo/Pan group	ANCESTRAL SPECIES	24	ENSGT00390000008427.f	ENSGT00940000155994	ENSGT00390000009359.a.h	ENSGT01030000234518.E.c.a	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000164413	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.a.a.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.a.c.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155959.l	ENSGT01040000241441	ENSGT00940000155142.i.b	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00550000074878.`b.b	ENSGT00390000014722	ENSGT00550000074870.b.nc	ENSGT00390000014996.y	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a
Pan	ANCESTRAL SPECIES	102																ENSGT00390000011176 #22	ENSGT00940000155959.l
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	557																ENSPTRG00000042980 #22	ENSPTRG00000051971
Chimpanzee	MODERN SPECIES	20	GCK (ENSPTRG00000019140)	MYL7 (ENSPTRG00000019139)	POLD2 (ENSPTRG00000019138)	AEBP1 (ENSPTRG00000019137)	POLM (ENSPTRG00000048404)	ENSPTRG00000043134	DBNL (ENSPTRG00000019134)	POLD2 (ENSPTRG00000046411)	ENSPTRG00000052352	POLM (ENSPTRG00000019136)	ENSPTRG00000051032	ENSPTRG00000047759	ENSPTRG00000050290	ENSPTRG00000028448	ENSPTRG00000039836	YAE1 (ENSPTRG00000019106) #22	ENSPTRG00000052776	RALA (ENSPTRG00000019108)	ENSPTRG00000050507	ENSPTRG00000034205	CDK13 (ENSPTRG00000019112)	MPLKIP (ENSPTRG00000019113)	SUGCT (ENSPTRG00000019114)	INHBA (ENSPTRG00000044337)	GLI3 (ENSPTRG00000019117) #36	ENSPTRG00000046687	C7H7orf25 (ENSPTRG00000023354)	PSMA2 (ENSPTRG00000019120)	MRPL32 (ENSPTRG00000019121)	HECW1 (ENSPTRG00000019123)	ENSPTRG00000050263
Bonobo	MODERN SPECIES	276																ENSPPAG00000027234 #22	ENSPPAG00000009357
Human	MODERN SPECIES	19	TRGJ1 (ENSG00000211690)	TRGJP (ENSG00000211691)	TRGJP1 (ENSG00000211692)	TRGV11 (ENSG00000211693)	TRGV10 (ENSG00000211694)	TRGV9 (ENSG00000211695)	TRGV8 (ENSG00000211696)	TRGV5 (ENSG00000211697)	TRGV4 (ENSG00000211698)	TRGV3 (ENSG00000211699)	TRGV2 (ENSG00000233306)	TRGV1 (ENSG00000211701)	AMPH (ENSG00000078053)	VPS41 (ENSG00000006715) #20	POU6F2 (ENSG00000106536) #21	YAE1 (ENSG00000241127) #22	RALA (ENSG00000006451)	CDK13 (ENSG00000065883)	MPLKIP (ENSG00000168303)	SUGCT (ENSG00000175600)	INHBA (ENSG00000122641)	GLI3 (ENSG00000106571) #36	C7orf25 (ENSG00000136197)	ENSG00000256646	PSMA2 (ENSG00000106588)	MRPL32 (ENSG00000106591)	HECW1 (ENSG00000002746)	STK17A (ENSG00000164543)	COA1 (ENSG00000106603)	BLVRA (ENSG00000106605)	MRPS24 (ENSG00000062582)
Gorilla	MODERN SPECIES	20	ENSGGOG00000004195	ELMO1 (ENSGGOG00000016941)	ENSGGOG00000024680	NME8 (ENSGGOG00000007442)	SFRP4 (ENSGGOG00000022312)	ENSGGOG00000000417	STARD3NL (ENSGGOG00000013471)	TRGV10 (ENSGGOG00000039270)	TRGV9 (ENSGGOG00000037452)	ENSGGOG00000041674	ENSGGOG00000042829	AMPH (ENSGGOG00000010988)	ENSGGOG00000036763	VPS41 (ENSGGOG00000006665) #20	POU6F2 (ENSGGOG00000006718) #21	YAE1 (ENSGGOG00000006725) #22	ENSGGOG00000039686	ENSGGOG00000041831	ENSGGOG00000043450	ENSGGOG00000006834	CDK13 (ENSGGOG00000007884)	MPLKIP (ENSGGOG00000041032)	SUGCT (ENSGGOG00000034863)	INHBA (ENSGGOG00000042209)	GLI3 (ENSGGOG00000002026) #36	ENSGGOG00000027255	ENSGGOG00000037303	C7orf25 (ENSGGOG00000002250)	PSMA2 (ENSGGOG00000006538)	MRPL32 (ENSGGOG00000027492)	HECW1 (ENSGGOG00000024448)
Orangutan	MODERN SPECIES	20	ENSPPYG00000039649	ENSPPYG00000034845	ENSPPYG00000041693	ENSPPYG00000039143	ENSPPYG00000017625	ENSPPYG00000035429	ENSPPYG00000034194	ENSPPYG00000032682	ENSPPYG00000037594	ENSPPYG00000037818	ENSPPYG00000030711	ENSPPYG00000033370	AMPH (ENSPPYG00000017623)	VPS41 (ENSPPYG00000017621) #20	POU6F2 (ENSPPYG00000029778) #21	YAE1 (ENSPPYG00000035738) #22	RALA (ENSPPYG00000017619)	CDK13 (ENSPPYG00000017618)	MPLKIP (ENSPPYG00000017617)	SUGCT (ENSPPYG00000017615)	INHBA (ENSPPYG00000038204)	GLI3 (ENSPPYG00000017613) #36	C7orf25 (ENSPPYG00000034147)	PSMA2 (ENSPPYG00000030380)	MRPL32 (ENSPPYG00000017611)	HECW1 (ENSPPYG00000017608)	STK17A (ENSPPYG00000017607)	COA1 (ENSPPYG00000017606)	BLVRA (ENSPPYG00000017605)	MRPS24 (ENSPPYG00000017604)	URGCP (ENSPPYG00000017603)
Gibbon	MODERN SPECIES	7	ELMO1 (ENSNLEG00000002372)	ENSNLEG00000033801	NME8 (ENSNLEG00000002555)	SFRP4 (ENSNLEG00000034263)	EPDR1 (ENSNLEG00000029788)	STARD3NL (ENSNLEG00000034855)	ENSNLEG00000030988	ENSNLEG00000029674	ENSNLEG00000030425	ENSNLEG00000028134	ENSNLEG00000027199	AMPH (ENSNLEG00000002797)	VPS41 (ENSNLEG00000002939) #20	POU6F2 (ENSNLEG00000003036) #21	ENSNLEG00000029534	YAE1 (ENSNLEG00000032479) #22	RALA (ENSNLEG00000003055)	CDK13 (ENSNLEG00000003097)	MPLKIP (ENSNLEG00000028028)	SUGCT (ENSNLEG00000003120)	INHBA (ENSNLEG00000003153)	GLI3 (ENSNLEG00000003160) #36	C7orf25 (ENSNLEG00000003174)	ENSNLEG00000027384	PSMA2 (ENSNLEG00000003177)	MRPL32 (ENSNLEG00000027404)	HECW1 (ENSNLEG00000003209)	ENSNLEG00000035608	STK17A (ENSNLEG00000003304)	COA1 (ENSNLEG00000003316)	BLVRA (ENSNLEG00000003333)
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476.g	ENSGT01050000245171	ENSGT00940000153143.a.b.b.a.a.b	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.b	ENSGT00940000153143.a.a.e.a.c.b	ENSGT00950000182882.A.b.a	ENSGT00940000153339.a.a.b.a	ENSGT00390000006224.i.b	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142.j	ENSGT01040000241441	ENSGT00940000155142.i.b	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00550000074878.`b.b	ENSGT00390000014722	ENSGT00550000074870.b.nc	ENSGT00390000014996.y	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000161910	ENSGT00940000155476.g	ENSGT01050000245171	ENSGT00940000153143.a.b.b.a.a.b	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.b.b	ENSGT00940000153143.a.a.e.a.c.b	ENSGT00940000153143.a.a.e.b.a	ENSGT00950000182882.A.b.a	ENSGT00940000153339.a.a.b.a	ENSGT00390000006224.i.b	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142.j	ENSGT01040000241441	ENSGT00940000155142.i.b	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00550000074878.`b.b	ENSGT00390000014722	ENSGT00550000074870.b.nc	ENSGT00390000014996.y	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000155476.g	ENSGT00940000153143.a.b.b.a.a.b	ENSGT01050000245171	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.b.b	ENSGT00940000153143.a.a.e.a.c.b	ENSGT00940000153143.a.a.e.b.a	ENSGT00950000182882.A.b.a	ENSGT00940000153339.a.a.b.a	ENSGT00390000006224.i.b	ENSGT00960000187337	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142.i.b	ENSGT01040000241441	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00550000074878.`b.b	ENSGT00390000014722	ENSGT00550000074870.b.nc	ENSGT00390000014996.y	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985
Cercopithecinae_b	ANCESTRAL SPECIES	11	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476.g	ENSGT00940000153143.a.b.b.a.a.b	ENSGT01050000245171	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00940000153339.a.a.b.a	ENSGT00390000006224.i.b	ENSGT00960000187337	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142.j	ENSGT01040000241441	ENSGT00940000155142.i.b	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00550000074878.`b.b	ENSGT00390000014722	ENSGT00550000074870.b.nc	ENSGT00390000014996.y	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a
Olive baboon	MODERN SPECIES	14	EPDR1 (ENSPANG00000006302)	ENSPANG00000051311	STARD3NL (ENSPANG00000016262)	ENSPANG00000050429	ENSPANG00000050953	ENSPANG00000044618	TRGV10 (ENSPANG00000013675)	ENSPANG00000037204	ENSPANG00000049083	TRGV9 (ENSPANG00000001237)	ENSPANG00000037866	ENSPANG00000043792	AMPH (ENSPANG00000013001)	VPS41 (ENSPANG00000003773) #20	POU6F2 (ENSPANG00000007998) #21	YAE1 (ENSPANG00000001303) #22	RALA (ENSPANG00000022183)	ENSPANG00000049728	CDK13 (ENSPANG00000022842)	MPLKIP (ENSPANG00000003774)	SUGCT (ENSPANG00000006854)	ENSPANG00000050783	ENSPANG00000040486	ENSPANG00000047702	ENSPANG00000041607	INHBA (ENSPANG00000000357)	GLI3 (ENSPANG00000014545) #36	ENSPANG00000050641	ENSPANG00000041647	C7orf25 (ENSPANG00000040755)	PSMA2 (ENSPANG00000007348)
Cercopithecinae_d	ANCESTRAL SPECIES	10	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476.g	ENSGT00940000153143.a.b.b.a.a.b	ENSGT01050000245171	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00940000153339.a.a.b.a	ENSGT00390000006224.i.b	ENSGT00960000187337	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT01040000241441	ENSGT00940000155142.i.b	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00550000074878.`b.b	ENSGT00390000014722	ENSGT00550000074870.b.nc	ENSGT00390000014996.y	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985
Sooty mangabey	MODERN SPECIES	98	GPR141 (ENSCATG00000020413)	NME8 (ENSCATG00000032975)	SFRP4 (ENSCATG00000035306)	EPDR1 (ENSCATG00000029310)	ENSCATG00000036966	ENSCATG00000021274	ENSCATG00000020969	ENSCATG00000021442	TRGV10 (ENSCATG00000018935)	TRGV9 (ENSCATG00000020585)	AMPH (ENSCATG00000019532)	ENSCATG00000033561	ENSCATG00000019163	VPS41 (ENSCATG00000042558) #20	POU6F2 (ENSCATG00000044154) #21	YAE1 (ENSCATG00000042398) #22	RALA (ENSCATG00000028248)	ENSCATG00000039454	CDK13 (ENSCATG00000036583)	MPLKIP (ENSCATG00000042621)	SUGCT (ENSCATG00000039409)
Drill	MODERN SPECIES	67	NME8 (ENSMLEG00000032939)	SFRP4 (ENSMLEG00000024196)	EPDR1 (ENSMLEG00000036271)	ENSMLEG00000030425	ENSMLEG00000018415	ENSMLEG00000027810	ENSMLEG00000025347	TRGV10 (ENSMLEG00000003998)	TRGV9 (ENSMLEG00000024000)	AMPH (ENSMLEG00000037087)	ENSMLEG00000038996	ENSMLEG00000038796	ENSMLEG00000022266	VPS41 (ENSMLEG00000039545) #20	POU6F2 (ENSMLEG00000023024) #21	YAE1 (ENSMLEG00000031449) #22	ENSMLEG00000043351	RALA (ENSMLEG00000029414)	ENSMLEG00000041130	MPLKIP (ENSMLEG00000044196)
Macaca	ANCESTRAL SPECIES	3	ENSGT01050000245171.b	ENSGT00940000153143.a.b.b.a.a.b	ENSGT01050000245171.a	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.b.b	ENSGT00940000153143.a.a.e.a.c.b	ENSGT00940000153143.a.a.e.b.a	ENSGT00950000182882.A.b.a	ENSGT00940000153339.a.a.b.a	ENSGT00390000006224.i.b	ENSGT00960000187337	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142.i.b	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00550000074878.`b.b	ENSGT00390000014722	ENSGT00550000074870.b.nc	ENSGT00390000014996.y	ENSGT00940000163323.c.a	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a
Pig-tailed macaque	MODERN SPECIES	261	SFRP4 (ENSMNEG00000038474)	EPDR1 (ENSMNEG00000002935)	ENSMNEG00000034363	ENSMNEG00000037797	ENSMNEG00000037726	ENSMNEG00000037795	ENSMNEG00000037608	TRGV10 (ENSMNEG00000002398)	TRGV9 (ENSMNEG00000027970)	AMPH (ENSMNEG00000032575)	ENSMNEG00000030841	ENSMNEG00000030066	ENSMNEG00000037722	VPS41 (ENSMNEG00000033123) #20	POU6F2 (ENSMNEG00000031528) #21	YAE1 (ENSMNEG00000040830) #22	RALA (ENSMNEG00000028965)	CDK13 (ENSMNEG00000040720)	MPLKIP (ENSMNEG00000030853)	SUGCT (ENSMNEG00000039404)
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00940000155476.g	ENSGT01050000245171.a	ENSGT00940000153143.a.b.b.a.a.b	ENSGT01030000240114	ENSGT01050000245171.b	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00960000190982	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.b.b	ENSGT00940000153143.a.a.e.a.c.b	ENSGT00940000153143.a.a.e.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142.i.b	ENSGT01100000263539.b.a.a.a.a.b.b.a.b.a.a	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00960000190657	ENSGT00390000014722	ENSGT00550000074870.b.nc	ENSGT00390000014996.y	ENSGT00940000163323.c.a	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985
Rhesus	MODERN SPECIES	13	ENSMMUG00000062946	ENSMMUG00000054077	ENSMMUG00000063974	ENSMMUG00000060806	ENSMMUG00000063169	ENSMMUG00000054749	TRGV10 (ENSMMUG00000059649)	TRGV9 (ENSMMUG00000052981)	ENSMMUG00000054501	ENSMMUG00000060606	AMPH (ENSMMUG00000023667)	VPS41 (ENSMMUG00000010042) #20	ENSMMUG00000051801	ENSMMUG00000050009	POU6F2 (ENSMMUG00000017106) #21	YAE1 (ENSMMUG00000013563) #22	ENSMMUG00000050440	RALA (ENSMMUG00000050621)	ENSMMUG00000052918	CDK13 (ENSMMUG00000018064)	MPLKIP (ENSMMUG00000054607)	ENSMMUG00000065307	SUGCT (ENSMMUG00000001702)	ENSMMUG00000054924	INHBA (ENSMMUG00000061466)	GLI3 (ENSMMUG00000013614) #36	ENSMMUG00000052530	ENSMMUG00000051741	C3H7orf25 (ENSMMUG00000022449)	PSMA2 (ENSMMUG00000022451)	MRPL32 (ENSMMUG00000060273)
Crab-eating macaque	MODERN SPECIES	13	ENSMFAG00000052572	ENSMFAG00000052846	ENSMFAG00000058050	ENSMFAG00000059928	TRGV10 (ENSMFAG00000030135)	TRGV9 (ENSMFAG00000030318)	ENSMFAG00000052827	ENSMFAG00000048242	ENSMFAG00000058033	ENSMFAG00000054044	AMPH (ENSMFAG00000000228)	ENSMFAG00000048709	ENSMFAG00000060851	VPS41 (ENSMFAG00000041501) #20	POU6F2 (ENSMFAG00000035869) #21	YAE1 (ENSMFAG00000030308) #22	RALA (ENSMFAG00000001704)	ENSMFAG00000050186	ENSMFAG00000057338	ENSMFAG00000058593	ENSMFAG00000000645	MPLKIP (ENSMFAG00000045608)	SUGCT (ENSMFAG00000043400)	INHBA (ENSMFAG00000054517)	ENSMFAG00000057391 #36	ENSMFAG00000056967	C7orf25 (ENSMFAG00000027286)	PSMA2 (ENSMFAG00000032277)	MRPL32 (ENSMFAG00000041218)	ENSMFAG00000056799	HECW1 (ENSMFAG00000003543)
Vervet Monkey	MODERN SPECIES	13	NME8 (ENSCSAG00000015075)	SFRP4 (ENSCSAG00000015084)	EPDR1 (ENSCSAG00000015088)	STARD3NL (ENSCSAG00000015104)	ENSCSAG00000015134	TRGV10 (ENSCSAG00000015141)	TRGV9 (ENSCSAG00000015146)	ENSCSAG00000015150	ENSCSAG00000015152	ENSCSAG00000015163	AMPH (ENSCSAG00000015175)	ENSCSAG00000019602	VPS41 (ENSCSAG00000015187) #20	POU6F2 (ENSCSAG00000015201) #21	ENSCSAG00000019601	YAE1 (ENSCSAG00000015211) #22	RALA (ENSCSAG00000015217)	CDK13 (ENSCSAG00000015259)	MPLKIP (ENSCSAG00000015281)	SUGCT (ENSCSAG00000015289)	ENSCSAG00000019600	INHBA (ENSCSAG00000015294)	GLI3 (ENSCSAG00000015361) #36	ENSCSAG00000019599	ENSCSAG00000015385	C7orf25 (ENSCSAG00000015390)	PSMA2 (ENSCSAG00000015394)	ENSCSAG00000015403	HECW1 (ENSCSAG00000015421)	STK17A (ENSCSAG00000015428)	COA1 (ENSCSAG00000015432)
Rhinopithecus	ANCESTRAL SPECIES	306							ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.a.c.a	ENSGT00950000182882.A.b.a	ENSGT00940000153339.a.a.b.a	ENSGT00390000006224.i.b.c	ENSGT00390000000481 #20	ENSGT00390000004524.c.a.a.a.b.f	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000170592	ENSGT00940000155142.i.b	ENSGT01040000241441	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866.c	ENSGT00940000157116	ENSGT00940000155925 #36
Golden snub-nosed monkey	MODERN SPECIES	1141										ENSRROG00000011911	ENSRROG00000035173	ENSRROG00000032501	VPS41 (ENSRROG00000037254) #20	ENSRROG00000036412	POU6F2 (ENSRROG00000035258) #21	YAE1 (ENSRROG00000039482) #22	ENSRROG00000041289	RALA (ENSRROG00000039058)	ENSRROG00000035116	CDK13 (ENSRROG00000021528)	MPLKIP (ENSRROG00000031838)	ENSRROG00000033340	ENSRROG00000009684	INHBA (ENSRROG00000034770)	GLI3 (ENSRROG00000035040) #36
Black snub-nosed monkey	MODERN SPECIES	211							TRGV10 (ENSRBIG00000018810)	TRGV9 (ENSRBIG00000004156)	AMPH (ENSRBIG00000043999)	ENSRBIG00000036614	ENSRBIG00000035101	ENSRBIG00000005517	VPS41 (ENSRBIG00000042579) #20	ENSRBIG00000032543	POU6F2 (ENSRBIG00000030181) #21	YAE1 (ENSRBIG00000040664) #22	ENSRBIG00000039338	RALA (ENSRBIG00000039597)	ENSRBIG00000024978	CDK13 (ENSRBIG00000039699)	MPLKIP (ENSRBIG00000043237)	ENSRBIG00000030763	ENSRBIG00000039916	INHBA (ENSRBIG00000034433)	GLI3 (ENSRBIG00000037773) #36	ENSRBIG00000038202
Tarsier	MODERN SPECIES	3728												ECHDC2 (ENSTSYG00000029252)	ZYG11A (ENSTSYG00000002797)	RHBDD2 (ENSTSYG00000035635)	ENSTSYG00000035665	YAE1D1 (ENSTSYG00000002132) #22	RALA (ENSTSYG00000030400)
Euarchontoglires_A	ANCESTRAL SPECIES	23	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.a.e.a	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00950000185265	ENSGT00940000168125	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000011179	ENSGT00940000154390.A.j
Tree shrew	MODERN SPECIES	167															POU6F2 (ENSTBEG00000010025) #21	YAE1 (ENSTBEG00000010085) #22	ENSTBEG00000010148
Glires	ANCESTRAL SPECIES	24	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.a.e.a	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00950000185265	ENSGT00940000168125	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000011179	ENSGT00940000154390.A.j
Lagomorpha	ANCESTRAL SPECIES	164									ENSGT00940000164413	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a
Rabbit	MODERN SPECIES	1	SFRP4 (ENSOCUG00000015877)	EPDR1 (ENSOCUG00000015882)	STARD3NL (ENSOCUG00000008939)	ENSOCUG00000036137	ENSOCUG00000039346	ENSOCUG00000034436	ENSOCUG00000039334	ENSOCUG00000025628	ENSOCUG00000031806	ENSOCUG00000025800	ENSOCUG00000032571	AMPH (ENSOCUG00000002244)	VPS41 (ENSOCUG00000000676) #20	POU6F2 (ENSOCUG00000013896) #21	ENSOCUG00000039486	YAE1 (ENSOCUG00000011496) #22	ENSOCUG00000016581	ENSOCUG00000016583	MPLKIP (ENSOCUG00000003189)	SUGCT (ENSOCUG00000003191)	ENSOCUG00000033395	INHBA (ENSOCUG00000000621)	GLI3 (ENSOCUG00000006563) #36	C7orf25 (ENSOCUG00000012089)	PSMA2 (ENSOCUG00000012092)	ENSOCUG00000012098	HECW1 (ENSOCUG00000007994)	STK17A (ENSOCUG00000015953)	BLVRA (ENSOCUG00000006916)	ENSOCUG00000008172	SCIN (ENSOCUG00000006986)
Pika	MODERN SPECIES	49															POU6F2 (ENSOPRG00000003744) #21	YAE1 (ENSOPRG00000003765) #22
Rodentia	ANCESTRAL SPECIES	12	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00950000185265	ENSGT00940000168125	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000011179	ENSGT00940000154390.A.j
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00950000185265	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000011179	ENSGT00940000154390.A.j
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00390000008749.e	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.a.d	ENSGT01060000248976	ENSGT00940000153143.a.b.b.a.b.d.a.c	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000011179	ENSGT00940000154390.A.j
Marmotini	ANCESTRAL SPECIES	37	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.a.d.a	ENSGT01060000248976.b	ENSGT00940000153143.a.b.b.a.b.d.a.c.a.b	ENSGT01060000248976.a	ENSGT00940000153143.a.b.b.a.b.d.a.c.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00960000189879	ENSGT00390000011072	ENSGT00940000153505.a.a.c.a	ENSGT00390000011179
Marmotini_b	ANCESTRAL SPECIES	26	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.a.d.a	ENSGT01060000248976.b	ENSGT00940000153143.a.b.b.a.b.d.a.c.a.b	ENSGT01060000248976.a	ENSGT00940000153143.a.b.b.a.b.d.a.c.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00960000189879	ENSGT00390000011072	ENSGT00940000153505.a.a.c.a	ENSGT00390000011179
Arctic ground squirrel	MODERN SPECIES	51	GPR141 (ENSUPAG00010002233)	ENSUPAG00010002224	NME8 (ENSUPAG00010002191)	SFRP4 (ENSUPAG00010002173)	EPDR1 (ENSUPAG00010002156)	STARD3NL (ENSUPAG00010002079)	ENSUPAG00010002063	ENSUPAG00010002060	ENSUPAG00010002054	ENSUPAG00010002049	ENSUPAG00010002046	ENSUPAG00010002019	AMPH (ENSUPAG00010001960)	VPS41 (ENSUPAG00010001930) #20	ENSUPAG00010001913 #21	YAE1 (ENSUPAG00010001890) #22	RALA (ENSUPAG00010001880)	CDK13 (ENSUPAG00010001813)	MPLKIP (ENSUPAG00010001797)	SUGCT (ENSUPAG00010001771)
Squirrel	MODERN SPECIES	78	ENSSTOG00000021378	EEPD1 (ENSSTOG00000008483)	ENSSTOG00000006630	ANLN (ENSSTOG00000024866)	AOAH (ENSSTOG00000006686)	ELMO1 (ENSSTOG00000005876)	GPR141 (ENSSTOG00000014563)	NME8 (ENSSTOG00000014565)	SFRP4 (ENSSTOG00000012692)	EPDR1 (ENSSTOG00000024033)	STARD3NL (ENSSTOG00000014750)	ENSSTOG00000022469	AMPH (ENSSTOG00000012263)	VPS41 (ENSSTOG00000007343) #20	ENSSTOG00000023336 #21	YAE1 (ENSSTOG00000023547) #22	RALA (ENSSTOG00000020292)	CDK13 (ENSSTOG00000022568)	MPLKIP (ENSSTOG00000026468)	SUGCT (ENSSTOG00000011998)	ENSSTOG00000034121	GLI3 (ENSSTOG00000020844) #36	C7orf25 (ENSSTOG00000027844)	PSMA2 (ENSSTOG00000013334)	MRPL32 (ENSSTOG00000013340)	HECW1 (ENSSTOG00000016043)	STK17A (ENSSTOG00000026139)	BLVRA (ENSSTOG00000021499)	MRPS24 (ENSSTOG00000032907)	URGCP (ENSSTOG00000010637)	UBE2D4 (ENSSTOG00000002630)
Alpin marmot	MODERN SPECIES	26	SFRP4 (ENSMMMG00000011801)	ENSMMMG00000011813	STARD3NL (ENSMMMG00000011818)	ENSMMMG00000011826	ENSMMMG00000011836	ENSMMMG00000011838	ENSMMMG00000011841	ENSMMMG00000011847	ENSMMMG00000011859	ENSMMMG00000011872	ENSMMMG00000011878	AMPH (ENSMMMG00000011881)	ENSMMMG00000011913	VPS41 (ENSMMMG00000011922) #20	ENSMMMG00000011962 #21	YAE1 (ENSMMMG00000011978) #22	RALA (ENSMMMG00000011989)	ENSMMMG00000011996	CDK13 (ENSMMMG00000012001)	MPLKIP (ENSMMMG00000012038)	SUGCT (ENSMMMG00000012046)	INHBA (ENSMMMG00000012059)	GLI3 (ENSMMMG00000012080) #36	ENSMMMG00000012105	ENSMMMG00000012111	ENSMMMG00000012115	C7orf25 (ENSMMMG00000012127)	PSMA2 (ENSMMMG00000012134)	MRPL32 (ENSMMMG00000012145)	ENSMMMG00000012152	HECW1 (ENSMMMG00000012160)
Eurasian red squirrel	MODERN SPECIES	17	ENSSVLG00005022300	NME8 (ENSSVLG00005022326)	SFRP4 (ENSSVLG00005022432)	EPDR1 (ENSSVLG00005022455)	ENSSVLG00005022493	STARD3NL (ENSSVLG00005022519)	ENSSVLG00005022564	ENSSVLG00005022581	ENSSVLG00005022603	TRGV9 (ENSSVLG00005022616)	ENSSVLG00005022644	AMPH (ENSSVLG00005022710)	VPS41 (ENSSVLG00005023041) #20	POU6F2 (ENSSVLG00005023305) #21	ENSSVLG00005023507	YAE1 (ENSSVLG00005004760) #22	RALA (ENSSVLG00005004779)	ENSSVLG00005004818	MPLKIP (ENSSVLG00005004837)	SUGCT (ENSSVLG00005004898)	ENSSVLG00005005063	ENSSVLG00005005081	INHBA (ENSSVLG00005005151)	GLI3 (ENSSVLG00005005178) #36	C7orf25 (ENSSVLG00005005209)	PSMA2 (ENSSVLG00005005237)	MRPL32 (ENSSVLG00005005303)	ENSSVLG00005005320	HECW1 (ENSSVLG00005005468)	STK17A (ENSSVLG00005005990)	COA1 (ENSSVLG00005006028)
Hystricomorpha	ANCESTRAL SPECIES	17	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00950000185265	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
Hystricomorpha_a	ANCESTRAL SPECIES	16	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00940000153143.a.b.b.a.b.d.b.b	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.b.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
Guinea pig	MODERN SPECIES	30	MATCAP2 (ENSCPOG00000008038)	ANLN (ENSCPOG00000008050)	ENSCPOG00000000295	ELMO1 (ENSCPOG00000005738)	GPR141 (ENSCPOG00000033831)	ENSCPOG00000033172	NME8 (ENSCPOG00000010378)	SFRP4 (ENSCPOG00000010391)	EPDR1 (ENSCPOG00000032481)	STARD3NL (ENSCPOG00000004394)	ENSCPOG00000024186	AMPH (ENSCPOG00000006478)	VPS41 (ENSCPOG00000006142) #20	ENSCPOG00000012221 #21	ENSCPOG00000036410 #21	YAE1 (ENSCPOG00000039885) #22	RALA (ENSCPOG00000037731)	ENSCPOG00000009938	MPLKIP (ENSCPOG00000037370)	SUGCT (ENSCPOG00000009948)	ENSCPOG00000037187	GLI3 (ENSCPOG00000013233) #36	C7orf25 (ENSCPOG00000013131)	PSMA2 (ENSCPOG00000013134)	MRPL32 (ENSCPOG00000034853)	HECW1 (ENSCPOG00000000176)	STK17A (ENSCPOG00000012689)	ENSCPOG00000037130	BLVRA (ENSCPOG00000008136)	ENSCPOG00000023116	ENSCPOG00000023341
Hystricomorpha_b	ANCESTRAL SPECIES	55	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00940000153143.a.b.b.a.b.d.b.b	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00390000011072
Degu	MODERN SPECIES	72	EEPD1 (ENSODEG00000007785)	MATCAP2 (ENSODEG00000010906)	ANLN (ENSODEG00000008115)	AOAH (ENSODEG00000009152)	ELMO1 (ENSODEG00000008951)	NME8 (ENSODEG00000008055)	SFRP4 (ENSODEG00000008477)	EPDR1 (ENSODEG00000008299)	STARD3NL (ENSODEG00000007720)	ENSODEG00000009018	ENSODEG00000010348	AMPH (ENSODEG00000010210)	ENSODEG00000009633 #20	ENSODEG00000007666 #20	POU6F2 (ENSODEG00000009460) #21	YAE1 (ENSODEG00000007300) #22	RALA (ENSODEG00000007864)	ENSODEG00000008309	ENSODEG00000008104	SUGCT (ENSODEG00000008687)	INHBA (ENSODEG00000007905)	GLI3 (ENSODEG00000008109) #36	C7orf25 (ENSODEG00000019542)	ENSODEG00000008580	MRPL32 (ENSODEG00000008658)	HECW1 (ENSODEG00000009462)	STK17A (ENSODEG00000007337)	BLVRA (ENSODEG00000007949)	RP9 (ENSODEG00000009275)	NT5C3A (ENSODEG00000011094)	FKBP9 (ENSODEG00000008022)
Long-tailed chinchilla	MODERN SPECIES	167	GPR141 (ENSCLAG00000011696)	NME8 (ENSCLAG00000007392)	SFRP4 (ENSCLAG00000007024)	EPDR1 (ENSCLAG00000006708)	ENSCLAG00000006163	STARD3NL (ENSCLAG00000005709)	ENSCLAG00000008127	ENSCLAG00000008044	ENSCLAG00000007605	ENSCLAG00000007481	ENSCLAG00000004875	AMPH (ENSCLAG00000004190)	VPS41 (ENSCLAG00000007171) #20	ENSCLAG00000006744 #21	ENSCLAG00000006621 #21	YAE1 (ENSCLAG00000006572) #22	RALA (ENSCLAG00000006479)	ENSCLAG00000011577	MPLKIP (ENSCLAG00000011526)	ENSCLAG00000008555	SUGCT (ENSCLAG00000007866)	INHBA (ENSCLAG00000007192)	GLI3 (ENSCLAG00000006524) #36	C7orf25 (ENSCLAG00000006458)	PSMA2 (ENSCLAG00000006277)	MRPL32 (ENSCLAG00000016308)	HECW1 (ENSCLAG00000011773)	STK17A (ENSCLAG00000010347)	BLVRA (ENSCLAG00000008524)
Naked mole-rat female	MODERN SPECIES		EPDR1 (ENSHGLG00000010611)	STARD3NL (ENSHGLG00000008923)	ENSHGLG00000048917	ENSHGLG00000007933	ENSHGLG00000044233	ENSHGLG00000032003	ENSHGLG00000035739	ENSHGLG00000036569	ENSHGLG00000043187	ENSHGLG00000048223	ENSHGLG00000049625	AMPH (ENSHGLG00000008101)	VPS41 (ENSHGLG00000017533) #20	POU6F2 (ENSHGLG00000041492) #21	ENSHGLG00000044208	YAE1 (ENSHGLG00000010237) #22	RALA (ENSHGLG00000038221)	CDK13 (ENSHGLG00000014999)	MPLKIP (ENSHGLG00000032456)	ENSHGLG00000038133	ENSHGLG00000040910	SUGCT (ENSHGLG00000008015)	INHBA (ENSHGLG00000041796)	ENSHGLG00000050582	ENSHGLG00000038563 #36	ENSHGLG00000033405	LANCL2 (ENSHGLG00000004769)	EGFR (ENSHGLG00000005749)	ENSHGLG00000037511	ENSHGLG00000015702	ENSHGLG00000033610
Rodentia_B	ANCESTRAL SPECIES	40		ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00390000011072	ENSGT00390000015821	ENSGT00530000063186.b.a	ENSGT00940000155450
Kangaroo rat	MODERN SPECIES	480								ENSDORG00000014695	ENSDORG00000025334	ENSDORG00000015981	Trgc4 (ENSDORG00000029771)	Amph (ENSDORG00000000364)	ENSDORG00000023528	Vps41 (ENSDORG00000015881) #20	Pou6f2 (ENSDORG00000011157) #21	Yae1d1 (ENSDORG00000009759) #22	Rala (ENSDORG00000024439)	ENSDORG00000027169	ENSDORG00000028130	ENSDORG00000001010	Sugct (ENSDORG00000001011)	ENSDORG00000001744	Gli3 (ENSDORG00000001532) #36	AW209491 (ENSDORG00000026137)	Psma2 (ENSDORG00000011746)	Mrpl32 (ENSDORG00000011748)	Hecw1 (ENSDORG00000011163)	ENSDORG00000010332
Myomorpha	ANCESTRAL SPECIES	50		ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00390000011072	ENSGT00390000015821	ENSGT00530000063186.b.a	ENSGT00940000155450
Muroidea	ANCESTRAL SPECIES	78		ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294
Muroidea_A	ANCESTRAL SPECIES	14	ENSGT01100000263548.a.a.b	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000158149	ENSGT00940000153498.A	ENSGT00530000063405.a	ENSGT00940000156562	ENSGT01100000263497.A
Cricetidae	ANCESTRAL SPECIES	7	ENSGT01100000263486.a.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.b	ENSGT01100000263548.a.a.b	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000158149	ENSGT00940000153498.A	ENSGT00530000063405.a	ENSGT00940000156562	ENSGT01100000263497.A
Cricetinae	ANCESTRAL SPECIES	26	ENSGT01100000263486.a.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.b	ENSGT01100000263548.a.a.b	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000164413	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000158149	ENSGT00940000153498.A	ENSGT00530000063405.a	ENSGT00940000156562	ENSGT01100000263497.A
Golden Hamster	MODERN SPECIES	646							Elmo1 (ENSMAUG00000021051)	Gpr141 (ENSMAUG00000008686)	Nme8 (ENSMAUG00000016668)	Sfrp4 (ENSMAUG00000018868)	Epdr1 (ENSMAUG00000004400)	Stard3nl (ENSMAUG00000014492)	ENSMAUG00000015422	Vps41 (ENSMAUG00000018045) #20	ENSMAUG00000013131 #21	Yae1d1 (ENSMAUG00000015770) #22	Rala (ENSMAUG00000008652)	Cdk13 (ENSMAUG00000017760)	ENSMAUG00000016486	Sugct (ENSMAUG00000009567)	Inhba (ENSMAUG00000021024)	Gli3 (ENSMAUG00000010007) #36	AW209491 (ENSMAUG00000007021)	Psma2 (ENSMAUG00000009719)	Mrpl32 (ENSMAUG00000019188)	Hecw1 (ENSMAUG00000003157)	ENSMAUG00000012797	ENSMAUG00000021330	Tbce (ENSMAUG00000013936)	B3galnt2 (ENSMAUG00000013962)	Gng4 (ENSMAUG00000011229)
Chinese hamster chok1gshd	MODERN SPECIES	317	Or2p2 (ENSCGRG00001007809)	Aoah (ENSCGRG00001000322)	Elmo1 (ENSCGRG00001019058)	Gpr141 (ENSCGRG00001008158)	Gpr141b (ENSCGRG00001009813)	Nme8 (ENSCGRG00001019516)	Sfrp4 (ENSCGRG00001016880)	Epdr1 (ENSCGRG00001014717)	Stard3nl (ENSCGRG00001000801)	ENSCGRG00001009580	Amph (ENSCGRG00001019554)	Vps41 (ENSCGRG00001018659) #20	ENSCGRG00001005827	ENSCGRG00001010504 #21	ENSCGRG00001025025 #21	Yae1d1 (ENSCGRG00001020898) #22	ENSCGRG00001012449	Cdk13 (ENSCGRG00001020334)	ENSCGRG00001011481	Sugct (ENSCGRG00001009192)	Inhba (ENSCGRG00001019473)	Gli3 (ENSCGRG00001007632) #36	AW209491 (ENSCGRG00001006859)	Psma2 (ENSCGRG00001023927)	Mrpl32 (ENSCGRG00001016443)	Hecw1 (ENSCGRG00001018493)	Arid4b (ENSCGRG00001014397)	Ggps1 (ENSCGRG00001020297)	Tbce (ENSCGRG00001023614)	B3galnt2 (ENSCGRG00001011516)	Gng4 (ENSCGRG00001003037)
Cricetidae_B	ANCESTRAL SPECIES	5	ENSGT01100000263486.a.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.b	ENSGT01100000263548.a.a.b	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000158149	ENSGT00940000153498.A	ENSGT00530000063405.a	ENSGT00940000156562	ENSGT01100000263497.A
Northern American deer mouse	MODERN SPECIES	18	Or2p2 (ENSPEMG00000005086)	Aoah (ENSPEMG00000010535)	Elmo1 (ENSPEMG00000018278)	ENSPEMG00000027404	Gpr141 (ENSPEMG00000004105)	Gpr141b (ENSPEMG00000029118)	Nme8 (ENSPEMG00000021510)	Sfrp4 (ENSPEMG00000023817)	Epdr1 (ENSPEMG00000028013)	Stard3nl (ENSPEMG00000012415)	ENSPEMG00000030898	ENSPEMG00000030093	Amph (ENSPEMG00000001572)	Vps41 (ENSPEMG00000022150) #20	ENSPEMG00000020563 #21	Yae1d1 (ENSPEMG00000026901) #22	Rala (ENSPEMG00000026406)	ENSPEMG00000027212	Cdk13 (ENSPEMG00000020703)	ENSPEMG00000026169	Sugct (ENSPEMG00000020290)	ENSPEMG00000028161	Inhba (ENSPEMG00000030253)	ENSPEMG00000001076	Gli3 (ENSPEMG00000022194) #36	ENSPEMG00000011637	ENSPEMG00000026547	AW209491 (ENSPEMG00000016335)	Psma2 (ENSPEMG00000000680)	Mrpl32 (ENSPEMG00000031368)	Hecw1 (ENSPEMG00000023229)
Prairie vole	MODERN SPECIES	85												Vps41 (ENSMOCG00000018741) #20	ENSMOCG00000004652	ENSMOCG00000005809	ENSMOCG00000015726 #21	Yae1d1 (ENSMOCG00000012487) #22	Rala (ENSMOCG00000000189)	Cdk13 (ENSMOCG00000018212)	ENSMOCG00000013905	Sugct (ENSMOCG00000021393)	Inhba (ENSMOCG00000001049)	Gli3 (ENSMOCG00000018186) #36	ENSMOCG00000014175	AW209491 (ENSMOCG00000022967)	ENSMOCG00000013606	Mrpl32 (ENSMOCG00000000157)	Hecw1 (ENSMOCG00000001967)	ENSMOCG00000003914	ENSMOCG00000007240	Ggps1 (ENSMOCG00000018805)	Tbce (ENSMOCG00000009857)
Murinae	ANCESTRAL SPECIES	27	ENSGT01100000263548.a.a.b	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000158149	ENSGT00940000153498.A	ENSGT00530000063405.a	ENSGT00940000156562	ENSGT01100000263497.A
Mus	ANCESTRAL SPECIES	18	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.b.b.i	ENSGT00860000135699	ENSGT00950000186470	ENSGT00940000168125	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.b.b.b.j	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000158149	ENSGT00940000153498.A	ENSGT00530000063405.a	ENSGT00940000156562	ENSGT01100000263497.A
Mus_A	ANCESTRAL SPECIES	14	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.b.b.i	ENSGT00860000135699	ENSGT00950000186470	ENSGT00940000168125	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.b.b.b.j	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996.db	ENSGT00940000158294	ENSGT00940000158149	ENSGT00940000153498.A	ENSGT00530000063405.a	ENSGT00940000156562	ENSGT01100000263497.A
Mus_B	ANCESTRAL SPECIES	13	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.d	ENSGT00860000135699	ENSGT00950000186470	ENSGT00940000168125	ENSGT00980000200102	ENSGT00940000153143.a.b.b.b.j	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996.db	ENSGT00940000158294	ENSGT00940000158149	ENSGT00940000153498.A	ENSGT00530000063405.a	ENSGT00940000156562	ENSGT01100000263497.A
Mouse	MODERN SPECIES	4	Trgv2 (ENSMUSG00000076754)	Trgj2 (ENSMUSG00000105830)	Trgc2 (ENSMUSG00000076752)	Trgc3 (ENSMUSG00000091682)	Trgj3 (ENSMUSG00000104630)	Trgv3 (ENSMUSG00000076750)	Trgc1 (ENSMUSG00000076749)	Trgj1 (ENSMUSG00000104962)	Trgv5 (ENSMUSG00000076747)	Trgv6 (ENSMUSG00000076746)	Trgv4 (ENSMUSG00000076745)	Trgv7 (ENSMUSG00000076744)	Amph (ENSMUSG00000021314)	Vps41 (ENSMUSG00000041236) #20	Pou6f2 (ENSMUSG00000009734) #21	Yae1d1 (ENSMUSG00000075054) #22	Rala (ENSMUSG00000008859)	Cdk13 (ENSMUSG00000041297)	Mplkip (ENSMUSG00000012429)	Sugct (ENSMUSG00000055137)	Inhba (ENSMUSG00000041324)	Gli3 (ENSMUSG00000021318) #36	AW209491 (ENSMUSG00000039182)	Psma2 (ENSMUSG00000015671)	Mrpl32 (ENSMUSG00000015672)	Hecw1 (ENSMUSG00000021301)	Arid4b (ENSMUSG00000039219)	Ggps1 (ENSMUSG00000021302)	Tbce (ENSMUSG00000039233)	B3galnt2 (ENSMUSG00000039242)	Gng4 (ENSMUSG00000021303)
Mus_C	ANCESTRAL SPECIES	10	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.d	ENSGT00860000135699	ENSGT00950000186470	ENSGT00940000168125	ENSGT00980000200102	ENSGT00940000153143.a.b.b.b.j	ENSGT00940000153143.a.a.e.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996.db	ENSGT00940000158294	ENSGT00940000158149	ENSGT00940000153498.A	ENSGT00530000063405.a	ENSGT00940000156562	ENSGT01100000263497.A
spretus	MODERN SPECIES	4	Gpr141b (MGP_SPRETEiJ_G0019112)	Nme8 (MGP_SPRETEiJ_G0019111)	MGP_SPRETEiJ_G0019110	Epdr1 (MGP_SPRETEiJ_G0019109)	Stard3nl (MGP_SPRETEiJ_G0019108)	Trgc4 (MGP_SPRETEiJ_G0002244)	Trgj4 (MGP_SPRETEiJ_G0002254)	Trgj3 (MGP_SPRETEiJ_G0002253)	Trgv5 (MGP_SPRETEiJ_G0002333)	Trgv6 (MGP_SPRETEiJ_G0002332)	Trgv4 (MGP_SPRETEiJ_G0002331)	Trgv7 (MGP_SPRETEiJ_G0002330)	MGP_SPRETEiJ_G0019107	Vps41 (MGP_SPRETEiJ_G0019106) #20	Pou6f2 (MGP_SPRETEiJ_G0019105) #21	Yae1d1 (MGP_SPRETEiJ_G0019104) #22	Rala (MGP_SPRETEiJ_G0019103)	Cdk13 (MGP_SPRETEiJ_G0019102)	MGP_SPRETEiJ_G0019101	Inhba (MGP_SPRETEiJ_G0019100)	Gli3 (MGP_SPRETEiJ_G0019099) #36	AW209491 (MGP_SPRETEiJ_G0019098)	Psma2 (MGP_SPRETEiJ_G0019097)	Mrpl32 (MGP_SPRETEiJ_G0019096)	Hecw1 (MGP_SPRETEiJ_G0019095)	Arid4b (MGP_SPRETEiJ_G0019094)	MGP_SPRETEiJ_G0019093	Tbce (MGP_SPRETEiJ_G0019092)	B3galnt2 (MGP_SPRETEiJ_G0019091)	MGP_SPRETEiJ_G0019090	Gng4 (MGP_SPRETEiJ_G0019089)
Steppe mouse	MODERN SPECIES	130													ENSMSIG00000003046	Vps41 (ENSMSIG00000002761) #20	Pou6f2 (ENSMSIG00000002639) #21	Yae1d1 (ENSMSIG00000002612) #22	Rala (ENSMSIG00000002581)	Cdk13 (ENSMSIG00000002486)	ENSMSIG00000002458	ENSMSIG00000002438	ENSMSIG00000002339
Ryukyu mouse	MODERN SPECIES	4	Epdr1 (MGP_CAROLIEiJ_G0018253)	Stard3nl (MGP_CAROLIEiJ_G0018252)	Trgc4 (MGP_CAROLIEiJ_G0002118)	Trgj4 (MGP_CAROLIEiJ_G0002127)	MGP_CAROLIEiJ_G0002208	MGP_CAROLIEiJ_G0002207	MGP_CAROLIEiJ_G0002206	Trgj3 (MGP_CAROLIEiJ_G0002126)	Trgv5 (MGP_CAROLIEiJ_G0002205)	MGP_CAROLIEiJ_G0002204	Trgv4 (MGP_CAROLIEiJ_G0002203)	Trgv7 (MGP_CAROLIEiJ_G0002202)	MGP_CAROLIEiJ_G0018251	Vps41 (MGP_CAROLIEiJ_G0018250) #20	Pou6f2 (MGP_CAROLIEiJ_G0018249) #21	Yae1d1 (MGP_CAROLIEiJ_G0018248) #22	Rala (MGP_CAROLIEiJ_G0018247)	Cdk13 (MGP_CAROLIEiJ_G0018246)	MGP_CAROLIEiJ_G0018245	MGP_CAROLIEiJ_G0018244	Sugct (MGP_CAROLIEiJ_G0018243)	Inhba (MGP_CAROLIEiJ_G0018242)	Gli3 (MGP_CAROLIEiJ_G0018241) #36	AW209491 (MGP_CAROLIEiJ_G0018240)	Psma2 (MGP_CAROLIEiJ_G0018239)	Mrpl32 (MGP_CAROLIEiJ_G0018238)	Hecw1 (MGP_CAROLIEiJ_G0018237)	Arid4b (MGP_CAROLIEiJ_G0018236)	Ggps1 (MGP_CAROLIEiJ_G0018235)	Tbce (MGP_CAROLIEiJ_G0018234)	MGP_CAROLIEiJ_G0018233
Shrew mouse	MODERN SPECIES	7	Gpr141b (MGP_PahariEiJ_G0019306)	Nme8 (MGP_PahariEiJ_G0019305)	MGP_PahariEiJ_G0019304	Epdr1 (MGP_PahariEiJ_G0019303)	Stard3nl (MGP_PahariEiJ_G0019302)	Trgc4 (MGP_PahariEiJ_G0001956)	Trgj4 (MGP_PahariEiJ_G0001963)	Trgj3 (MGP_PahariEiJ_G0001962)	Trgv5 (MGP_PahariEiJ_G0002042)	MGP_PahariEiJ_G0002041	Trgv4 (MGP_PahariEiJ_G0002040)	Trgv7 (MGP_PahariEiJ_G0002039)	MGP_PahariEiJ_G0019301	Vps41 (MGP_PahariEiJ_G0019300) #20	Pou6f2 (MGP_PahariEiJ_G0019299) #21	Yae1d1 (MGP_PahariEiJ_G0019298) #22	Rala (MGP_PahariEiJ_G0019297)	Cdk13 (MGP_PahariEiJ_G0019296)	MGP_PahariEiJ_G0019295	MGP_PahariEiJ_G0019294	Sugct (MGP_PahariEiJ_G0019293)	Inhba (MGP_PahariEiJ_G0019292)	Gli3 (MGP_PahariEiJ_G0019291) #36	AW209491 (MGP_PahariEiJ_G0019290)	Psma2 (MGP_PahariEiJ_G0019289)	Mrpl32 (MGP_PahariEiJ_G0019288)	Hecw1 (MGP_PahariEiJ_G0019287)	Arid4b (MGP_PahariEiJ_G0019286)	Ggps1 (MGP_PahariEiJ_G0019285)	MGP_PahariEiJ_G0019284	MGP_PahariEiJ_G0019283
Rat	DUPLICATION
Rat	MODERN SPECIES	14	Tmem168 (ENSRNOG00000057290)	LOC100911252 (ENSRNOG00000062896)	ENSRNOG00000064825	Tas2r7l (ENSRNOG00000024685)	AABR07059877.1 (ENSRNOG00000039626)	Vwde (ENSRNOG00000024709)	Tmem106b (ENSRNOG00000006206)	ENSRNOG00000069963	ENSRNOG00000068666	Thsd7a (ENSRNOG00000030151)	Phf14 (ENSRNOG00000005775)	Ndufa4 (ENSRNOG00000005512)	ENSRNOG00000066267	LOC680964 (ENSRNOG00000047566)	ENSRNOG00000065391	LOC500028 (ENSRNOG00000008962) #22	Rps4x-ps9 (ENSRNOG00000029574)	Nxph1 (ENSRNOG00000008939)	Ica1 (ENSRNOG00000008628)	Glcci1 (ENSRNOG00000008524)	Rpa3 (ENSRNOG00000008309)	Mios (ENSRNOG00000007924)	Col28a1 (ENSRNOG00000033618)	C1galt1 (ENSRNOG00000007804)	Polr1d-ps1 (ENSRNOG00000065557)	Asns (ENSRNOG00000007546)	Sdhaf3 (ENSRNOG00000011283)	Dlx5 (ENSRNOG00000010905)	ENSRNOG00000068262	Dlx6 (ENSRNOG00000063630)	Sem1 (ENSRNOG00000010420)
Rat	MODERN SPECIES	8	Elmo1 (ENSRNOG00000059705)	Gpr141 (ENSRNOG00000066332)	Sfrp4 (ENSRNOG00000054957)	Nme8 (ENSRNOG00000058285)	Epdr1 (ENSRNOG00000060141)	LOC498759 (ENSRNOG00000050687)	Stard3nl (ENSRNOG00000052429)	ENSRNOG00000063508	ENSRNOG00000066100	AABR07027872.1 (ENSRNOG00000055197)	ENSRNOG00000070051	LOC100910792 (ENSRNOG00000059510)	Vps41 (ENSRNOG00000012940) #20	Pou6f2 (ENSRNOG00000013237) #21	AABR07027925.2 (ENSRNOG00000030925)	Yae1 (ENSRNOG00000013438) #22	Rala (ENSRNOG00000013454)	Cdk13 (ENSRNOG00000013620)	Mplkip (ENSRNOG00000013806)	Sugct (ENSRNOG00000066247)	Inhba (ENSRNOG00000014320)	Gli3 (ENSRNOG00000014395) #36	Psme1-ps1 (ENSRNOG00000061359)	Gabpb1l (ENSRNOG00000053439)	RGD1308147 (ENSRNOG00000015523)	Psma2 (ENSRNOG00000049920)	Mrpl32 (ENSRNOG00000015989)	Hecw1 (ENSRNOG00000016046)	Rbbp4-ps2 (ENSRNOG00000021292)	ENSRNOG00000064563	Arid4b (ENSRNOG00000016391)
Upper Galilee mountains blind mole rat	MODERN SPECIES	563															ENSNGAG00000012062 #21	Yae1d1 (ENSNGAG00000004879) #22	ENSNGAG00000002014 ##14
Lesser Egyptian jerboa	MODERN SPECIES	161	Elmo1 (ENSJJAG00000003658)	ENSJJAG00000000615	Gpr141 (ENSJJAG00000012473)	Nme8 (ENSJJAG00000000267)	Sfrp4 (ENSJJAG00000024190)	Epdr1 (ENSJJAG00000024132)	Stard3nl (ENSJJAG00000023909)	Amph (ENSJJAG00000022889)	ENSJJAG00000021910	ENSJJAG00000021560	ENSJJAG00000021435	ENSJJAG00000020912	Vps41 (ENSJJAG00000020760) #20	Pou6f2 (ENSJJAG00000020320) #21	ENSJJAG00000017234	Yae1d1 (ENSJJAG00000017087) #22
Laurasiatheria	ANCESTRAL SPECIES	29	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.a.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00950000185265	ENSGT00940000153143.a.b.b.a.b.d.b.b	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.f	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000011176 #22
Hedgehog	MODERN SPECIES	13704																YAE1 (ENSEEUG00000015496) #22
Common shrew	MODERN SPECIES	12038																YAE1 (ENSSARG00000010336) #22
Laurasiatheria_a	ANCESTRAL SPECIES	14	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00950000185265	ENSGT00940000153143.a.b.b.a.b.d.b.b	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.f	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Artiodactyla	ANCESTRAL SPECIES	11	ENSGT00940000154738.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.b	ENSGT00940000153143.a.a.f.e.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.a.a.b	ENSGT00940000153143.a.a.f.f	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00940000158490
Suina	ANCESTRAL SPECIES	19	ENSGT00390000016226	ENSGT00390000006479	ENSGT00510000050353	ENSGT00940000162476	ENSGT00940000162620	ENSGT00940000155829.i	ENSGT00940000162497	ENSGT00390000006211	ENSGT00940000161747	ENSGT00940000155153.B	ENSGT00940000162942	ENSGT00940000162364	ENSGT00940000161885	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00940000158490
Chacoan peccary	DUPLICATION
Chacoan peccary	MODERN SPECIES	898						ZNF467 (ENSCWAG00000008368)	KRBA1 (ENSCWAG00000008095)	ZNF746 (ENSCWAG00000007990)	ZNF777 (ENSCWAG00000007946)	ZNF783 (ENSCWAG00000007923)	ZNF212 (ENSCWAG00000007892)	ENSCWAG00000007860	ZNF282 (ENSCWAG00000007766)	VPS41 (ENSCWAG00000007522) #20	POU6F2 (ENSCWAG00000007309) #21	ENSCWAG00000007273 #22	RALA (ENSCWAG00000007246)	CDK13 (ENSCWAG00000007203)	MPLKIP (ENSCWAG00000007188)	SUGCT (ENSCWAG00000007038)	INHBA (ENSCWAG00000007021)	GLI3 (ENSCWAG00000006996) #36	C7orf25 (ENSCWAG00000006982)	PSMA2 (ENSCWAG00000006930)	MRPL32 (ENSCWAG00000006907)	HECW1 (ENSCWAG00000006585)	ENSCWAG00000006541	STK17A (ENSCWAG00000006512)	COA1 (ENSCWAG00000006493)	BLVRA (ENSCWAG00000006473)	POLM (ENSCWAG00000006436)
Chacoan peccary	MODERN SPECIES	80	ENSCWAG00000002147	ENSCWAG00000002137	ENSCWAG00000002128	ENSCWAG00000002120	ENSCWAG00000002115	OR8D1 (ENSCWAG00000002103)	OR8D2 (ENSCWAG00000002095)	ENSCWAG00000002088	ENSCWAG00000002084	ENSCWAG00000002073	ENSCWAG00000002061	ENSCWAG00000002052	ENSCWAG00000002045	OR8B4 (ENSCWAG00000002035)	OR8B8 (ENSCWAG00000002026)	ENSCWAG00000002023 #22	ENSCWAG00000002016	ENSCWAG00000001995	OR8B12 (ENSCWAG00000001989)	ENSCWAG00000001980	PANX3 (ENSCWAG00000001968)	TBRG1 (ENSCWAG00000001948)	SIAE (ENSCWAG00000001932)	SPA17 (ENSCWAG00000001919)	NRGN (ENSCWAG00000001910)	VSIG2 (ENSCWAG00000001898)	ESAM (ENSCWAG00000001883)	MSANTD2 (ENSCWAG00000001858)	ROBO3 (ENSCWAG00000001801)	ROBO4 (ENSCWAG00000001739)	HEPACAM (ENSCWAG00000001721)
Pig	MODERN SPECIES	9	RARRES2 (ENSSSCG00000035419)	ENSSSCG00000040690	LRRC61 (ENSSSCG00000061542)	ATP6V0E2 (ENSSSCG00000055239)	ZNF862 (ENSSSCG00000040257)	ENSSSCG00000039661	ZNF467 (ENSSSCG00000039041)	KRBA1 (ENSSSCG00000034873)	ENSSSCG00000056306	ZNF777 (ENSSSCG00000016775)	ZNF783 (ENSSSCG00000031870)	ZNF212 (ENSSSCG00000016773)	ENSSSCG00000055672	VPS41 (ENSSSCG00000016772) #20	POU6F2 (ENSSSCG00000037764) #21	YAE1 (ENSSSCG00000030497) #22	RALA (ENSSSCG00000048439)	CDK13 (ENSSSCG00000016769)	MPLKIP (ENSSSCG00000016768)	SUGCT (ENSSSCG00000035581)	INHBA (ENSSSCG00000035077)	GLI3 (ENSSSCG00000016763) #36	C7orf25 (ENSSSCG00000016760)	PSMA2 (ENSSSCG00000039582)	ENSSSCG00000025060	HECW1 (ENSSSCG00000036443)	ENSSSCG00000040496	STK17A (ENSSSCG00000016758)	ENSSSCG00000027491	BLVRA (ENSSSCG00000016756)	POLM (ENSSSCG00000016755)
Artiodactyla_a	ANCESTRAL SPECIES	11	ENSGT00940000154738.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.b	ENSGT00940000153143.a.a.f.e.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.a.a.b	ENSGT00940000153143.a.a.f.f	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00940000158490
Artiodactyla_b	ANCESTRAL SPECIES	11	ENSGT00940000154738.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.a	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b	ENSGT00940000153143.a.a.f.e.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.b.b.a.b.d.b.b.g	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00940000158490
Cetacea	ANCESTRAL SPECIES	13	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.b.g	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00390000010089.e.a	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996.q	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00940000158490
Odontoceti	ANCESTRAL SPECIES	12	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00390000010089.e.a	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996.q	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00940000158490
Odontoceti_a	ANCESTRAL SPECIES	13	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00550000074844.e	ENSGT00940000156003	ENSGT00940000162514	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996.q	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00940000158490	ENSGT00940000158323
Odontoceti_b	ANCESTRAL SPECIES	13	ENSGT00550000074844.e	ENSGT00940000156003	ENSGT00940000162514	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.b.g	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000154937.n.b.a	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996.q	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00940000158490	ENSGT00940000158323
Monodontidae	ANCESTRAL SPECIES	12	ENSGT00550000074844.e	ENSGT00940000156003	ENSGT00940000162514	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.b.g	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000154937.n.b.a	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996.q	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00940000158490	ENSGT00940000158323
Narwhal	MODERN SPECIES	306	ENSMMNG00015013268	LAMB1 (ENSMMNG00015013160)	ENSMMNG00015013081	NRCAM (ENSMMNG00015012839)	ENSMMNG00015012715	PNPLA8 (ENSMMNG00015012688)	SFRP4 (ENSMMNG00015012664)	EPDR1 (ENSMMNG00015012643)	STARD3NL (ENSMMNG00015012620)	ENSMMNG00015012608	TRGV9 (ENSMMNG00015012603)	AMPH (ENSMMNG00015012588)	VPS41 (ENSMMNG00015012514) #20	ENSMMNG00015012432	POU6F2 (ENSMMNG00015012404) #21	YAE1 (ENSMMNG00015012376) #22	ENSMMNG00015012353	RALA (ENSMMNG00015012334)	CDK13 (ENSMMNG00015012288)	MPLKIP (ENSMMNG00015012269)	SUGCT (ENSMMNG00015012249)	INHBA (ENSMMNG00015012234)	GLI3 (ENSMMNG00015012212) #36	C7orf25 (ENSMMNG00015012199)	PSMA2 (ENSMMNG00015012176)	ENSMMNG00015012161	HECW1 (ENSMMNG00015012084)	STK17A (ENSMMNG00015012037)	COA1 (ENSMMNG00015012011)	BLVRA (ENSMMNG00015011986)	POLM (ENSMMNG00015011889)
Beluga whale	MODERN SPECIES	17	SLC26A3 (ENSDLEG00000001327)	ENSDLEG00000001603	LAMB1 (ENSDLEG00000001755)	NRCAM (ENSDLEG00000002187)	PNPLA8 (ENSDLEG00000003929)	ENSDLEG00000003945	SFRP4 (ENSDLEG00000003959)	EPDR1 (ENSDLEG00000003987)	STARD3NL (ENSDLEG00000003993)	ENSDLEG00000004009	TRGV9 (ENSDLEG00000004015)	AMPH (ENSDLEG00000004019)	VPS41 (ENSDLEG00000004033) #20	POU6F2 (ENSDLEG00000004053) #21	ENSDLEG00000004072	YAE1D1 (ENSDLEG00000004079) #22	RALA (ENSDLEG00000004089)	CDK13 (ENSDLEG00000004120)	MPLKIP (ENSDLEG00000004129)	SUGCT (ENSDLEG00000004144)	INHBA (ENSDLEG00000004199)	GLI3 (ENSDLEG00000004234) #36	CUNH7orf25 (ENSDLEG00000004273)	PSMA2 (ENSDLEG00000004285)	MRPL32 (ENSDLEG00000004297)	HECW1 (ENSDLEG00000004308)	STK17A (ENSDLEG00000004330)	COA1 (ENSDLEG00000004335)	BLVRA (ENSDLEG00000004351)	POLM (ENSDLEG00000004372)	AEBP1 (ENSDLEG00000004426)
Vaquita	MODERN SPECIES	20	ENSPSNG00000004749	LAMB1 (ENSPSNG00000004801)	NRCAM (ENSPSNG00000005031)	PNPLA8 (ENSPSNG00000005209)	ENSPSNG00000005245	ENSPSNG00000005266	SFRP4 (ENSPSNG00000005311)	EPDR1 (ENSPSNG00000005343)	STARD3NL (ENSPSNG00000005380)	ENSPSNG00000005418	TRGV9 (ENSPSNG00000005429)	AMPH (ENSPSNG00000005476)	VPS41 (ENSPSNG00000005623) #20	POU6F2 (ENSPSNG00000005694) #21	ENSPSNG00000005765	YAE1 (ENSPSNG00000005783) #22	ENSPSNG00000005805	RALA (ENSPSNG00000005824)	CDK13 (ENSPSNG00000005890)	MPLKIP (ENSPSNG00000005962)	SUGCT (ENSPSNG00000006038)	INHBA (ENSPSNG00000006133)	GLI3 (ENSPSNG00000006154) #36	C7orf25 (ENSPSNG00000006173)	PSMA2 (ENSPSNG00000006196)	ENSPSNG00000006232	HECW1 (ENSPSNG00000006347)	STK17A (ENSPSNG00000006610)	ENSPSNG00000006640	BLVRA (ENSPSNG00000006663)	POLM (ENSPSNG00000006694)
Dolphin	MODERN SPECIES	3306															POU6F2 (ENSTTRG00000010646) #21	YAE1 (ENSTTRG00000010650) #22	RALA (ENSTTRG00000010652)
Sperm whale	MODERN SPECIES	16	DLD (ENSPCTG00005003576)	LAMB1 (ENSPCTG00005003613)	NRCAM (ENSPCTG00005003750)	PNPLA8 (ENSPCTG00005004055)	ENSPCTG00005004079	ENSPCTG00005004084	SFRP4 (ENSPCTG00005004100)	EPDR1 (ENSPCTG00005004105)	STARD3NL (ENSPCTG00005004119)	ENSPCTG00005004146	TRGV9 (ENSPCTG00005004157)	AMPH (ENSPCTG00005004186)	VPS41 (ENSPCTG00005004357) #20	ENSPCTG00005004493	ENSPCTG00005004517 #21	YAE1 (ENSPCTG00005004539) #22	ENSPCTG00005004553	RALA (ENSPCTG00005004575)	CDK13 (ENSPCTG00005004628)	MPLKIP (ENSPCTG00005004756)	SUGCT (ENSPCTG00005004779)	ENSPCTG00005004799	INHBA (ENSPCTG00005004805)	GLI3 (ENSPCTG00005004827) #36	PSMA2 (ENSPCTG00005004869)	MRPL32 (ENSPCTG00005004935)	HECW1 (ENSPCTG00005004997)	STK17A (ENSPCTG00005005297)	COA1 (ENSPCTG00005005324)	BLVRA (ENSPCTG00005005350)	AEBP1 (ENSPCTG00005005498)
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	20	LAMB1 (ENSBMSG00010007213)	NRCAM (ENSBMSG00010007300)	PNPLA8 (ENSBMSG00010007530)	ENSBMSG00010007569	NME8 (ENSBMSG00010007585)	SFRP4 (ENSBMSG00010007619)	EPDR1 (ENSBMSG00010007630)	STARD3NL (ENSBMSG00010007649)	ENSBMSG00010007675	ENSBMSG00010007727	TRGV9 (ENSBMSG00010007735)	AMPH (ENSBMSG00010007773)	VPS41 (ENSBMSG00010007891) #20	POU6F2 (ENSBMSG00010007920) #21	ENSBMSG00010007967	ENSBMSG00010007978 #22	RALA (ENSBMSG00010007998)	CDK13 (ENSBMSG00010008022)	MPLKIP (ENSBMSG00010008105)	SUGCT (ENSBMSG00010008128)	ENSBMSG00010008170	INHBA (ENSBMSG00010008174)	GLI3 (ENSBMSG00010008182) #36	C7orf25 (ENSBMSG00010008192)	PSMA2 (ENSBMSG00010008200)	ENSBMSG00010008215	ENSBMSG00010008222	HECW1 (ENSBMSG00010008240)	STK17A (ENSBMSG00010008340)	COA1 (ENSBMSG00010008357)	BLVRA (ENSBMSG00010008368)
Blue whale	MODERN SPECIES	18	NYAP2 (ENSBMSG00010002939)	ENSBMSG00010002950	IRS1 (ENSBMSG00010002959)	RHBDD1 (ENSBMSG00010002962)	ENSBMSG00010002968	COL4A4 (ENSBMSG00010002977)	COL4A3 (ENSBMSG00010003041)	ENSBMSG00010003122	TM4SF20 (ENSBMSG00010003234)	AGFG1 (ENSBMSG00010003307)	ENSBMSG00010003632	ENSBMSG00010003644	ENSBMSG00010003649	ENSBMSG00010003655	ENSBMSG00010003663	ENSBMSG00010003672 #22	CCL20 (ENSBMSG00010003686)	DAW1 (ENSBMSG00010003700)	SPHKAP (ENSBMSG00010003729)	PID1 (ENSBMSG00010003756)	DNER (ENSBMSG00010003780)	ENSBMSG00010003793	TRIP12 (ENSBMSG00010003831)	FBXO36 (ENSBMSG00010003905)	ENSBMSG00010003918	SLC16A14 (ENSBMSG00010000190)	ENSBMSG00010000219	ENSBMSG00010000251	SP140 (ENSBMSG00010000276)	ENSBMSG00010000307	CAB39 (ENSBMSG00010000347)
Pecora	ANCESTRAL SPECIES	11	ENSGT00940000163382	ENSGT00590000083094.a.b	ENSGT00940000159477	ENSGT00390000013249	ENSGT00940000155529.C	ENSGT00950000183004.a.b.a.a	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072.c.a	ENSGT00940000158490
Percora_a	ANCESTRAL SPECIES	11	ENSGT00940000163382	ENSGT00590000083094.a.b	ENSGT00940000159477	ENSGT00390000013249	ENSGT00940000155529.C	ENSGT00950000183004.a.b.a.a	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072.c.a	ENSGT00940000158490
Bovidae	ANCESTRAL SPECIES	12	ENSGT00940000163382	ENSGT00590000083094.a.b	ENSGT00940000159477	ENSGT00390000013249	ENSGT00940000155529.C	ENSGT00950000183004.a.b.a.a	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT01100000263600	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072.c.a
Bovinae	ANCESTRAL SPECIES	8	ENSGT00590000083094.a.b	ENSGT00940000159477	ENSGT00940000153305.d.`b.b	ENSGT00390000013249	ENSGT00940000155529.C	ENSGT00950000183004.a.b.a.a	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000159695.h	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT01100000263600	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072.c.a
Bos	ANCESTRAL SPECIES	8	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00950000185265.c	ENSGT00950000185265.d	ENSGT00940000153143.a.a.f.e.b.b	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.b	ENSGT00940000153143.a.a.f.e.a.a.b.a	ENSGT00940000153143.a.a.f.e.a.a.b.b	ENSGT00940000153143.a.a.f.e.a.a.a	ENSGT00940000153143.a.a.f.e.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000156821.p.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000159695.h	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00940000153362.a.cb.a.b.a	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT01100000263600	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985
Bos_b	ANCESTRAL SPECIES	7	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.a	ENSGT01100000263480.a.a.a.a.b.a.a.a.b.a.a.b.b.a.a.b	ENSGT00550000074794.k.b.a	ENSGT00730000111212.i.a	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00940000153143.a.a.f.e.a.a.b.a	ENSGT00940000153143.a.a.f.e.a.a.b.b	ENSGT00940000153143.a.a.f.e.a.a.a	ENSGT00940000153143.a.a.f.e.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000159695.h	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00940000153362.a.cb.a.b.a	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072.c.a
Cow	MODERN SPECIES	23	CPED1 (ENSBTAG00000002938)	ING3 (ENSBTAG00000016332)	TSPAN12 (ENSBTAG00000015337)	KCND2 (ENSBTAG00000032077)	ENSBTAG00000031464	ENSBTAG00000006152	LSM8 (ENSBTAG00000012649)	ENSBTAG00000049399	ENSBTAG00000002859	ENSBTAG00000055254	ENSBTAG00000053474	ENSBTAG00000000144	AMPH (ENSBTAG00000031967)	VPS41 (ENSBTAG00000007305) #20	POU6F2 (ENSBTAG00000013648) #21	YAE1 (ENSBTAG00000001892) #22	RALA (ENSBTAG00000006661)	ENSBTAG00000054825	CDK13 (ENSBTAG00000001528)	MPLKIP (ENSBTAG00000018715)	SUGCT (ENSBTAG00000032121)	ENSBTAG00000053253	INHBA (ENSBTAG00000048508)	GLI3 (ENSBTAG00000010671) #36	C4H7orf25 (ENSBTAG00000009472)	PSMA2 (ENSBTAG00000000990)	MRPL32 (ENSBTAG00000000991)	HECW1 (ENSBTAG00000021216)	STK17A (ENSBTAG00000008143)	COA1 (ENSBTAG00000012968)	BLVRA (ENSBTAG00000013414)
Hybrid Bos Indicus	MODERN SPECIES	23	ENSBIXG00005020661	ENSBIXG00005020654	ENSBIXG00005003487	ENSBIXG00005020637	ENSBIXG00005020605	ENSBIXG00005020596	ENSBIXG00005020565	ENSBIXG00005020557	ENSBIXG00005005537	ENSBIXG00005020518	ENSBIXG00005006259	AMPH (ENSBIXG00005020476)	ENSBIXG00005020415	VPS41 (ENSBIXG00005020347) #20	POU6F2 (ENSBIXG00005020231) #21	YAE1 (ENSBIXG00005005866) #22	RALA (ENSBIXG00005020138)	ENSBIXG00005020124	ENSBIXG00005020109	CDK13 (ENSBIXG00005020092)	MPLKIP (ENSBIXG00005020016)	SUGCT (ENSBIXG00005003265)	ENSBIXG00005019940	INHBA (ENSBIXG00005019918)	GLI3 (ENSBIXG00005019847) #36	ENSBIXG00005006253	C7orf25 (ENSBIXG00005019735)	PSMA2 (ENSBIXG00005007827)	MRPL32 (ENSBIXG00005019681)	HECW1 (ENSBIXG00005019608)	ENSBIXG00005006146
Bos_a	ANCESTRAL SPECIES	12	ENSGT00940000161777.b	ENSGT00730000111212.i.a	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00950000185265.c	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.b	ENSGT00940000153143.a.a.f.e.a.a.b.a	ENSGT00940000153143.a.a.f.e.a.a.b.b	ENSGT00940000153143.a.a.f.e.a.a.a	ENSGT00940000153143.a.a.f.e.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000156821.p.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000159695.h	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00940000153362.a.cb.a.b.a	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT01100000263600	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985
Wild yak	MODERN SPECIES	130										ENSBMUG00000004688	ENSBMUG00000004661	ENSBMUG00000004644	AMPH (ENSBMUG00000004619)	VPS41 (ENSBMUG00000004561) #20	POU6F2 (ENSBMUG00000004479) #21	YAE1 (ENSBMUG00000004434) #22	RALA (ENSBMUG00000004423)	ENSBMUG00000004411	CDK13 (ENSBMUG00000004384)	MPLKIP (ENSBMUG00000004347)	SUGCT (ENSBMUG00000004307)	INHBA (ENSBMUG00000004244)
Domestic yak	MODERN SPECIES	23	ENSBGRG00000026231	ENSBGRG00000007313	ENSBGRG00000007452	ENSBGRG00000007474	ENSBGRG00000007497	ENSBGRG00000007552	ENSBGRG00000007614	ENSBGRG00000007638	ENSBGRG00000007662	ENSBGRG00000007684	ENSBGRG00000007724	ENSBGRG00000007791	AMPH (ENSBGRG00000007825)	VPS41 (ENSBGRG00000008270) #20	POU6F2 (ENSBGRG00000008844) #21	YAE1 (ENSBGRG00000009045) #22	RALA (ENSBGRG00000009084)	ENSBGRG00000009155	CDK13 (ENSBGRG00000009206)	MPLKIP (ENSBGRG00000009446)	SUGCT (ENSBGRG00000009489)	ENSBGRG00000009661	INHBA (ENSBGRG00000009678)	GLI3 (ENSBGRG00000009720) #36	ENSBGRG00000009871	C7orf25 (ENSBGRG00000009953)	ENSBGRG00000009970	MRPL32 (ENSBGRG00000010055)	HECW1 (ENSBGRG00000010187)	ENSBGRG00000010541	STK17A (ENSBGRG00000010569)
American bison	MODERN SPECIES	3354									ENSBBBG00000003947	ENSBBBG00000007259	ENSBBBG00000003951	AMPH (ENSBBBG00000015904)	ENSBBBG00000015915	VPS41 (ENSBBBG00000016003) #20	POU6F2 (ENSBBBG00000007418) #21	YAE1 (ENSBBBG00000016071) #22	RALA (ENSBBBG00000016078)	ENSBBBG00000016085	ENSBBBG00000016096	ENSBBBG00000016100	ENSBBBG00000016104	CDK13 (ENSBBBG00000004014)	MPLKIP (ENSBBBG00000016185)	SUGCT (ENSBBBG00000016251)	INHBA (ENSBBBG00000016277)	ENSBBBG00000016287	GLI3 (ENSBBBG00000016416) #36	C7orf25 (ENSBBBG00000016430)	PSMA2 (ENSBBBG00000007372)	MRPL32 (ENSBBBG00000007141)	ENSBBBG00000016533
Caprinae	ANCESTRAL SPECIES	10	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.a	ENSGT00730000111212.i.b	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00950000185265	ENSGT00940000153143.a.a.f.e.b.b	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.b	ENSGT00940000153143.a.a.f.e.a.a.a	ENSGT00940000153143.a.a.f.e.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT01100000263600	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072.c.a
Rambouillet Sheep	MODERN SPECIES	20	TSPAN12 (ENSOARG00020002120)	KCND2 (ENSOARG00020002102)	ENSOARG00020002086	ENSOARG00020002076	LSM8 (ENSOARG00020002018)	ENSOARG00020002009	ENSOARG00020002006	ENSOARG00020002001	ENSOARG00020001983	ENSOARG00020001968	ENSOARG00020001954	ENSOARG00020001937	AMPH (ENSOARG00020001336)	VPS41 (ENSOARG00020000815) #20	POU6F2 (ENSOARG00020000606) #21	ENSOARG00020000581 #22	RALA (ENSOARG00020000572)	CDK13 (ENSOARG00020000425)	MPLKIP (ENSOARG00020000391)	SUGCT (ENSOARG00020000282)	INHBA (ENSOARG00020000159)	ENSOARG00020000108	GLI3 (ENSOARG00020010338) #36	ENSOARG00020010281	C7orf25 (ENSOARG00020010245)	ENSOARG00020010111	MRPL32 (ENSOARG00020010057)	ENSOARG00020010002	HECW1 (ENSOARG00020009226)	ENSOARG00020009157	STK17A (ENSOARG00020009115)
Goat	MODERN SPECIES	23	CPED1 (ENSCHIG00000007761)	ING3 (ENSCHIG00000009707)	TSPAN12 (ENSCHIG00000012755)	ENSCHIG00000025503	KCND2 (ENSCHIG00000017913)	ENSCHIG00000022010	LSM8 (ENSCHIG00000014201)	ENSCHIG00000007301	ENSCHIG00000018076	ENSCHIG00000013794	AMPH (ENSCHIG00000020495)	ENSCHIG00000011903	VPS41 (ENSCHIG00000005959) #20	ENSCHIG00000020600 #21	ENSCHIG00000016882 #21	YAE1 (ENSCHIG00000016002) #22	RALA (ENSCHIG00000013549)	CDK13 (ENSCHIG00000022113)	ENSCHIG00000022322	MPLKIP (ENSCHIG00000021871)	SUGCT (ENSCHIG00000017599)	INHBA (ENSCHIG00000025901)	GLI3 (ENSCHIG00000015297) #36	ENSCHIG00000012804	C7orf25 (ENSCHIG00000009068)	ENSCHIG00000012524	MRPL32 (ENSCHIG00000026167)	HECW1 (ENSCHIG00000018639)	ENSCHIG00000022757	STK17A (ENSCHIG00000012894)	COA1 (ENSCHIG00000025366)
Siberian musk deer	MODERN SPECIES	87													VPS41 (ENSMMSG00000008890) #20	POU6F2 (ENSMMSG00000009061) #21	ENSMMSG00000009247	YAE1 (ENSMMSG00000009286) #22	RALA (ENSMMSG00000009317)	CDK13 (ENSMMSG00000009356)	MPLKIP (ENSMMSG00000009516)	SUGCT (ENSMMSG00000009548)	INHBA (ENSMMSG00000009680)	ENSMMSG00000009697	GLI3 (ENSMMSG00000009711) #36	C7orf25 (ENSMMSG00000009736)	PSMA2 (ENSMMSG00000009746)	MRPL32 (ENSMMSG00000009758)	ENSMMSG00000009775	ENSMMSG00000009803	HECW1 (ENSMMSG00000009873)	ENSMMSG00000010172	STK17A (ENSMMSG00000010195)
Yarkand deer	MODERN SPECIES	9	ING3 (ENSCHYG00000023988)	TSPAN12 (ENSCHYG00000023924)	KCND2 (ENSCHYG00000023858)	ENSCHYG00000023821	ENSCHYG00000023772	ENSCHYG00000023745	ENSCHYG00000023709	ENSCHYG00000023676	ENSCHYG00000023641	ENSCHYG00000023578	TRGV9 (ENSCHYG00000023546)	ENSCHYG00000023515	AMPH (ENSCHYG00000023423)	VPS41 (ENSCHYG00000023031) #20	POU6F2 (ENSCHYG00000022756) #21	YAE1 (ENSCHYG00000022705) #22	RALA (ENSCHYG00000022661)	CDK13 (ENSCHYG00000022509)	MPLKIP (ENSCHYG00000022483)	ENSCHYG00000022441	ENSCHYG00000022424	SUGCT (ENSCHYG00000022125)	ENSCHYG00000022091	INHBA (ENSCHYG00000022041)	GLI3 (ENSCHYG00000021798) #36	ENSCHYG00000021751	ENSCHYG00000021719	C7orf25 (ENSCHYG00000021701)	PSMA2 (ENSCHYG00000021589)	MRPL32 (ENSCHYG00000021557)	HECW1 (ENSCHYG00000020708)
Camelidae	ANCESTRAL SPECIES	2	ENSGT00940000162514	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.a.a.b	ENSGT00940000153143.a.a.f.f	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00940000158490	ENSGT00940000158323
Alpaca	MODERN SPECIES	2665														VPS41 (ENSVPAG00000002802) #20	ENSVPAG00000002808 #21	YAE1 (ENSVPAG00000002809) #22	RALA (ENSVPAG00000002810)
Arabian camel	MODERN SPECIES	33	ENSCDRG00005014311	NRCAM (ENSCDRG00005013628)	PNPLA8 (ENSCDRG00005013502)	ENSCDRG00005013484	NME8 (ENSCDRG00005013336)	SFRP4 (ENSCDRG00005013281)	EPDR1 (ENSCDRG00005013212)	STARD3NL (ENSCDRG00005013129)	ENSCDRG00005013102	ENSCDRG00005013075	ENSCDRG00005013064	TRGV9 (ENSCDRG00005013028)	AMPH (ENSCDRG00005012906)	VPS41 (ENSCDRG00005012696) #20	ENSCDRG00005012656 #21	YAE1 (ENSCDRG00005012620) #22	RALA (ENSCDRG00005012560)	CDK13 (ENSCDRG00005012070)	MPLKIP (ENSCDRG00005012010)	SUGCT (ENSCDRG00005011669)	INHBA (ENSCDRG00005011609)	GLI3 (ENSCDRG00005011370) #36	ENSCDRG00005011309 #36	C7orf25 (ENSCDRG00005011146)	MRPL32 (ENSCDRG00005011105)	HECW1 (ENSCDRG00005010909)	ENSCDRG00005010848	COA1 (ENSCDRG00005010728)	BLVRA (ENSCDRG00005010641)	POLM (ENSCDRG00005010471)	AEBP1 (ENSCDRG00005010388)
Laurasiatheria_b	ANCESTRAL SPECIES	14	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.f	ENSGT00940000153143.a.b.b.a.b.d.b.b	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Carnivora	ANCESTRAL SPECIES	15	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00940000153143.a.b.b.a.b.d.b.b	ENSGT00940000153143.a.a.f	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Caniformia	ANCESTRAL SPECIES	11	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.b.a.b.d.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.b	ENSGT00940000153143.a.a.f	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Caniformia_b	ANCESTRAL SPECIES	9	ENSGT00550000074844	ENSGT00940000156003	ENSGT00940000162514	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.b.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Ursidae	ANCESTRAL SPECIES	12	ENSGT00940000154738.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.b.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.b.b	ENSGT00940000153143.a.b.b.a.b.d.b.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.b.a.a.a.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.b.a.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b.eb	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000011179.y.a	ENSGT00390000011179.y.b
Ursus	ANCESTRAL SPECIES	47	ENSGT00940000154738.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.b.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.b.b.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.b.a.a.a.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.b.a.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b.eb	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000011179.y.a	ENSGT00390000011179.y.b
Polar bear	MODERN SPECIES	254	NME8 (ENSUMAG00000011128)	SFRP4 (ENSUMAG00000011122)	EPDR1 (ENSUMAG00000011119)	STARD3NL (ENSUMAG00000011107)	ENSUMAG00000011095	ENSUMAG00000011093	ENSUMAG00000011092	ENSUMAG00000011085	ENSUMAG00000011080	ENSUMAG00000011076	ENSUMAG00000011067	ENSUMAG00000011063	AMPH (ENSUMAG00000010258)	VPS41 (ENSUMAG00000010082) #20	POU6F2 (ENSUMAG00000010055) #21	YAE1 (ENSUMAG00000010045) #22	RALA (ENSUMAG00000010042)	CDK13 (ENSUMAG00000009940)	MPLKIP (ENSUMAG00000009927)	SUGCT (ENSUMAG00000009910)	INHBA (ENSUMAG00000009886)	ENSUMAG00000009879 #36	C7orf25 (ENSUMAG00000009863)	PSMA2 (ENSUMAG00000009859)	MRPL32 (ENSUMAG00000009855)	ENSUMAG00000009845	ENSUMAG00000009834	STK17A (ENSUMAG00000009828)	COA1 (ENSUMAG00000009824)	BLVRA (ENSUMAG00000009818)	ENSUMAG00000009809
American black bear	MODERN SPECIES	1805															ENSUAMG00000023821 #21	YAE1 (ENSUAMG00000023819) #22	RALA (ENSUAMG00000023818)
Giant Panda	MODERN SPECIES		ENSAMEG00000028077	STARD3NL (ENSAMEG00000014271)	ENSAMEG00000023819	ENSAMEG00000018862	ENSAMEG00000023613	ENSAMEG00000008188	ENSAMEG00000028940	ENSAMEG00000029209	ENSAMEG00000030382	ENSAMEG00000030076	ENSAMEG00000025931	ENSAMEG00000030993	AMPH (ENSAMEG00000008197)	VPS41 (ENSAMEG00000008248) #20	ENSAMEG00000029042 #21	YAE1 (ENSAMEG00000008311) #22	ENSAMEG00000008355	CDK13 (ENSAMEG00000008368)	MPLKIP (ENSAMEG00000008385)	SUGCT (ENSAMEG00000008389)	INHBA (ENSAMEG00000008401)	GLI3 (ENSAMEG00000008405) #36	PSMA2 (ENSAMEG00000009463)	MRPL32 (ENSAMEG00000009422)	HECW1 (ENSAMEG00000009403)	STK17A (ENSAMEG00000009381)	ENSAMEG00000009377	BLVRA (ENSAMEG00000017487)	ENSAMEG00000017491	ENSAMEG00000017495	ENSAMEG00000030622
Mustelinae	ANCESTRAL SPECIES	85													ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
American mink	MODERN SPECIES	44	TLR1 (ENSNVIG00000007556)	KLF3 (ENSNVIG00000007568)	ENSNVIG00000007582	ENSNVIG00000007594	ENSNVIG00000007613	PGM2 (ENSNVIG00000007633)	RELL1 (ENSNVIG00000007645)	ENSNVIG00000007667	NWD2 (ENSNVIG00000007681)	DTHD1 (ENSNVIG00000007729)	ENSNVIG00000007808	ARAP2 (ENSNVIG00000007823)	ENSNVIG00000007960	VPS41 (ENSNVIG00000007984) #20	POU6F2 (ENSNVIG00000008041) #21	YAED1 (ENSNVIG00000008105) #22	ENSNVIG00000008132	CDK13 (ENSNVIG00000008170)	MPLKIP (ENSNVIG00000008260)	SUGCT (ENSNVIG00000008278)	ENSNVIG00000008410
Ferret	MODERN SPECIES	165												AMPH (ENSMPUG00000018129)	ENSMPUG00000018130	VPS41 (ENSMPUG00000018131) #20	POU6F2 (ENSMPUG00000018132) #21	YAE1 (ENSMPUG00000018133) #22	ENSMPUG00000018134	RALA (ENSMPUG00000018135)	ENSMPUG00000018136	CDK13 (ENSMPUG00000018137)	MPLKIP (ENSMPUG00000018138)	SUGCT (ENSMPUG00000018139)	ENSMPUG00000018140	ENSMPUG00000018141	INHBA (ENSMPUG00000018142)	GLI3 (ENSMPUG00000018143) #36	C7orf25 (ENSMPUG00000018144)	PSMA2 (ENSMPUG00000018145)	ENSMPUG00000018146	ENSMPUG00000018147	STK17A (ENSMPUG00000018148)
Canidae	ANCESTRAL SPECIES	54	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.b.h	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.f.a.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.f.b	ENSGT00940000153143.a.b.b.a.b.d.b.b.i.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.e	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00390000008294.e.b.a.a	ENSGT00390000001376.db.g	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00900000143452	ENSGT00940000154014.a	ENSGT00440000033985
Canis_lupus	ANCESTRAL SPECIES	45	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.f.a.b	ENSGT00940000153143.a.b.b.a.b.d.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.f.a.a	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.b.a.b.d.b.b.i.a	ENSGT00940000153143.a.b.b.a.b.d.b.b.h	ENSGT00940000153143.a.b.b.a.b.d.a.a	ENSGT00940000153143.a.b.b.a.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00390000008294.e.b.a.a	ENSGT00390000001376.db.g.g	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
Dog	MODERN SPECIES	9	ENSCAFG00845022077	STARD3NL (ENSCAFG00845021955)	ENSCAFG00845021911	ENSCAFG00845021879	ENSCAFG00845021852	ENSCAFG00845021823	ENSCAFG00845021753	ENSCAFG00845021676	ENSCAFG00845021625	ENSCAFG00845021399	ENSCAFG00845021281	AMPH (ENSCAFG00845020583)	VPS41 (ENSCAFG00845020061) #20	ENSCAFG00845019954	POU6F2 (ENSCAFG00845019684) #21	YAE1 (ENSCAFG00845019598) #22	RALA (ENSCAFG00845019538)	CDK13 (ENSCAFG00845019359)	MPLKIP (ENSCAFG00845019316)	SUGCT (ENSCAFG00845018864)	ENSCAFG00845018696	INHBA (ENSCAFG00845018632)	GLI3 (ENSCAFG00845018240) #36	C18H7orf25 (ENSCAFG00845018090)	PSMA2 (ENSCAFG00845017988)	MRPL32 (ENSCAFG00845017918)	ENSCAFG00845017883	HECW1 (ENSCAFG00845017152)	STK17A (ENSCAFG00845011865)	COA1 (ENSCAFG00845011827)	BLVRA (ENSCAFG00845011746)
Dingo	MODERN SPECIES	103	EPDR1 (ENSCAFG00020023267)	STARD3NL (ENSCAFG00020023276)	ENSCAFG00020023281	ENSCAFG00020023285	ENSCAFG00020023288	ENSCAFG00020023292	ENSCAFG00020023304	ENSCAFG00020023307	ENSCAFG00020023310	ENSCAFG00020023314	ENSCAFG00020023317	AMPH (ENSCAFG00020023336)	VPS41 (ENSCAFG00020023396) #20	POU6F2 (ENSCAFG00020023412) #21	ENSCAFG00020023429	YAE1 (ENSCAFG00020023432) #22	RALA (ENSCAFG00020023437)	ENSCAFG00020023440	CDK13 (ENSCAFG00020023450)	MPLKIP (ENSCAFG00020023490)	SUGCT (ENSCAFG00020023498)	ENSCAFG00020023526	INHBA (ENSCAFG00020023530)	GLI3 (ENSCAFG00020023540) #36	C7orf25 (ENSCAFG00020023562)	PSMA2 (ENSCAFG00020023566)	MRPL32 (ENSCAFG00020023577)	HECW1 (ENSCAFG00020023579)	STK17A (ENSCAFG00020023589)	COA1 (ENSCAFG00020023593)	BLVRA (ENSCAFG00020023597)
Red fox	MODERN SPECIES	60										ENSVVUG00000005411	AMPH (ENSVVUG00000005432)	VPS41 (ENSVVUG00000005485) #20	ENSVVUG00000005535	ENSVVUG00000005547	ENSVVUG00000005573 #21	YAE1 (ENSVVUG00000005580) #22	RALA (ENSVVUG00000005586)	ENSVVUG00000005608	CDK13 (ENSVVUG00000005637)	MPLKIP (ENSVVUG00000005927)	SUGCT (ENSVVUG00000005947)	ENSVVUG00000006053	ENSVVUG00000006098	INHBA (ENSVVUG00000006107)	GLI3 (ENSVVUG00000006139) #36	CUNH7orf25 (ENSVVUG00000006554)	PSMA2 (ENSVVUG00000006556)	MRPL32 (ENSVVUG00000006632)	HECW1 (ENSVVUG00000006733)	ENSVVUG00000009786	STK17A (ENSVVUG00000009792)
Felidae	ANCESTRAL SPECIES	13	ENSGT00940000162514	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000182574	ENSGT00940000164413	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.c.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.c.a.a.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT01010000227741	ENSGT00390000006350.m.b.l	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
Panthera	ANCESTRAL SPECIES	1	ENSGT00940000154738.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000182574	ENSGT00940000164413	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.c.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.d.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.d.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.c.a.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT01010000227741	ENSGT00390000006350.m.b.l	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
Panthera_a	ANCESTRAL SPECIES		ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000182574	ENSGT00940000164413	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.c.a.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.c.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.d.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.d.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.c.a.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT01010000227741	ENSGT00390000006350.m.b.l	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072
lion	MODERN SPECIES	2	ENSPLOG00000014499	NME8 (ENSPLOG00000014369)	SFRP4 (ENSPLOG00000014304)	EPDR1 (ENSPLOG00000014221)	ENSPLOG00000014190	STARD3NL (ENSPLOG00000014122)	ENSPLOG00000014092	ENSPLOG00000014080	ENSPLOG00000014062	ENSPLOG00000014034	ENSPLOG00000013936	ENSPLOG00000013911	AMPH (ENSPLOG00000013547)	VPS41 (ENSPLOG00000013425) #20	POU6F2 (ENSPLOG00000013191) #21	YAE1 (ENSPLOG00000013140) #22	RALA (ENSPLOG00000013111)	ENSPLOG00000012991	ENSPLOG00000012926	CDK13 (ENSPLOG00000012792)	MPLKIP (ENSPLOG00000012761)	SUGCT (ENSPLOG00000012382)	INHBA (ENSPLOG00000012325)	GLI3 (ENSPLOG00000012098) #36	C7orf25 (ENSPLOG00000012077)	PSMA2 (ENSPLOG00000012010)	MRPL32 (ENSPLOG00000011953)	HECW1 (ENSPLOG00000011517)	STK17A (ENSPLOG00000011441)	ENSPLOG00000011414	BLVRA (ENSPLOG00000011346)
leopard	MODERN SPECIES	20	NRCAM (ENSPPRG00000004719)	PNPLA8 (ENSPPRG00000006146)	ENSPPRG00000006900	NME8 (ENSPPRG00000007373)	SFRP4 (ENSPPRG00000007513)	EPDR1 (ENSPPRG00000008052)	STARD3NL (ENSPPRG00000009862)	ENSPPRG00000010148	ENSPPRG00000010408	ENSPPRG00000011214	ENSPPRG00000011849	ENSPPRG00000013366	AMPH (ENSPPRG00000018727)	VPS41 (ENSPPRG00000023241) #20	POU6F2 (ENSPPRG00000000448) #21	YAE1 (ENSPPRG00000000795) #22	RALA (ENSPPRG00000001413)	ENSPPRG00000002725	CDK13 (ENSPPRG00000004607)	ENSPPRG00000004981	ENSPPRG00000005409	SUGCT (ENSPPRG00000007612)	INHBA (ENSPPRG00000009179)	GLI3 (ENSPPRG00000009937) #36	ENSPPRG00000010031	C7orf25 (ENSPPRG00000010249)	PSMA2 (ENSPPRG00000011046)	MRPL32 (ENSPPRG00000011233)	HECW1 (ENSPPRG00000013400)	STK17A (ENSPPRG00000013907)	ENSPPRG00000014621
Tiger	MODERN SPECIES	484									ENSPTIG00000011341	ENSPTIG00000011171	ENSPTIG00000011074	ENSPTIG00000010636	AMPH (ENSPTIG00000008766)	VPS41 (ENSPTIG00000007310) #20	POU6F2 (ENSPTIG00000005482) #21	YAE1 (ENSPTIG00000004957) #22	RALA (ENSPTIG00000004587)	ENSPTIG00000001053	MPLKIP (ENSPTIG00000020797)	SUGCT (ENSPTIG00000019973)	INHBA (ENSPTIG00000019931)	ENSPTIG00000019835 #36	C7orf25 (ENSPTIG00000019732)	PSMA2 (ENSPTIG00000019642)	MRPL32 (ENSPTIG00000019413)	HECW1 (ENSPTIG00000018862)	STK17A (ENSPTIG00000018723)	BLVRA (ENSPTIG00000018409)	VOPP1 (ENSPTIG00000017875)	LANCL2 (ENSPTIG00000017744)	EGFR (ENSPTIG00000015949)
Cat	MODERN SPECIES	1	NME8 (ENSFCAG00000012691)	SFRP4 (ENSFCAG00000025247)	EPDR1 (ENSFCAG00000046351)	ENSFCAG00000052500	STARD3NL (ENSFCAG00000008357)	ENSFCAG00000053315	ENSFCAG00000032420	ENSFCAG00000050464	ENSFCAG00000039973	ENSFCAG00000035027	ENSFCAG00000023786	TRG (ENSFCAG00000050998)	AMPH (ENSFCAG00000003529)	VPS41 (ENSFCAG00000019210) #20	POU6F2 (ENSFCAG00000035781) #21	YAE1 (ENSFCAG00000027937) #22	RALA (ENSFCAG00000025425)	ENSFCAG00000048602	ENSFCAG00000033905	CDK13 (ENSFCAG00000010257)	MPLKIP (ENSFCAG00000036429)	SUGCT (ENSFCAG00000010258)	INHBA (ENSFCAG00000010866)	GLI3 (ENSFCAG00000011989) #36	CA2H7orf25 (ENSFCAG00000013690)	PSMA2 (ENSFCAG00000023349)	MRPL32 (ENSFCAG00000041230)	HECW1 (ENSFCAG00000010375)	STK17A (ENSFCAG00000006138)	ENSFCAG00000039405	ENSFCAG00000049450
Laurasiatheria_c	ANCESTRAL SPECIES	13	ENSGT00940000156003	ENSGT00940000162514	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.f	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000011179	ENSGT00940000154390.A.j
Equus	ANCESTRAL SPECIES	57	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.a.a.b.a	ENSGT00940000153143.a.a.f.c.a.b.b	ENSGT00940000153143.a.a.f.c.a.a.a.a.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.j	ENSGT00940000153143.a.a.f.c.a.a.a.b	ENSGT00940000153143.a.b.b.b.o	ENSGT00940000153143.a.b.b.a.b.d.b.a.a.a.a.b.b	ENSGT00940000153143.a.a.f.c.a.a.a.a.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b.i.b	ENSGT00940000153143.a.a.f.c.a.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a	ENSGT00940000153143.a.a.f.c.a.a.a.a.b.b	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996.u	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000011179	ENSGT00940000154390.A.j
Donkey	MODERN SPECIES		ENSEASG00005027487	ENSEASG00005034452	ENSEASG00005017579	ENSEASG00005029474	ENSEASG00005033047	ENSEASG00005023742	ENSEASG00005027386	ENSEASG00005024515	ENSEASG00005024703	ENSEASG00005027212	ENSEASG00005032514	AMPH (ENSEASG00005017588)	ENSEASG00005017606 #20	ENSEASG00005027728	POU6F2 (ENSEASG00005017610) #21	YAE1 (ENSEASG00005017612) #22	RALA (ENSEASG00005017614)	ENSEASG00005036227	CDK13 (ENSEASG00005017623)	MPLKIP (ENSEASG00005017642)	SUGCT (ENSEASG00005017649)	INHBA (ENSEASG00005029952)	GLI3 (ENSEASG00005017667) #36	C7orf25 (ENSEASG00005017675)	PSMA2 (ENSEASG00005017678)	ENSEASG00005027314	HECW1 (ENSEASG00005017685)	STK17A (ENSEASG00005017699)	COA1 (ENSEASG00005029281)	BLVRA (ENSEASG00005017707)	MRPS24 (ENSEASG00005030446)
Horse	MODERN SPECIES	25	ENSECAG00000041152	ENSECAG00000034648	ENSECAG00000046026	ENSECAG00000039965	ENSECAG00000044453	ENSECAG00000037575	ENSECAG00000042774	ENSECAG00000057402	ENSECAG00000036132	ENSECAG00000059202	ENSECAG00000038560	ENSECAG00000050978	AMPH (ENSECAG00000004135)	VPS41 (ENSECAG00000006943) #20	POU6F2 (ENSECAG00000013209) #21	YAE1 (ENSECAG00000014499) #22	RALA (ENSECAG00000017044)	ENSECAG00000051072	ENSECAG00000043932	CDK13 (ENSECAG00000017341)	MPLKIP (ENSECAG00000033876)	SUGCT (ENSECAG00000020946)	INHBA (ENSECAG00000022448)	GLI3 (ENSECAG00000009281) #36	C4H7orf25 (ENSECAG00000002284)	ENSECAG00000009052	PSMA2 (ENSECAG00000020597)	HECW1 (ENSECAG00000010537)	STK17A (ENSECAG00000006915)	COA1 (ENSECAG00000011136)	BLVRA (ENSECAG00000011650)
Chiroptera	ANCESTRAL SPECIES	24	ENSGT00940000162514	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.f	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00440000033985	ENSGT00390000011072
Microchiroptera	ANCESTRAL SPECIES	24	ENSGT00940000162514	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a.f	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.b.cb.a	ENSGT00390000014996	ENSGT00940000158294	ENSGT00440000033985	ENSGT00390000011072
Microbat	MODERN SPECIES	955	LAMB4 (ENSMLUG00000017380)	NRCAM (ENSMLUG00000017381)	ENSMLUG00000028543	PNPLA8 (ENSMLUG00000010509)	NME8 (ENSMLUG00000004186)	SFRP4 (ENSMLUG00000004200)	EPDR1 (ENSMLUG00000004207)	STARD3NL (ENSMLUG00000012478)	ENSMLUG00000022304	ENSMLUG00000025893	ENSMLUG00000022442	ENSMLUG00000027596	AMPH (ENSMLUG00000009337)	VPS41 (ENSMLUG00000008811) #20	ENSMLUG00000002698 #21	YAE1 (ENSMLUG00000002704) #22	ENSMLUG00000024824	RALA (ENSMLUG00000009687)	CDK13 (ENSMLUG00000017326)	ENSMLUG00000030645	ENSMLUG00000027675	SUGCT (ENSMLUG00000003940)	INHBA (ENSMLUG00000015706)	GLI3 (ENSMLUG00000015711) #36	ENSMLUG00000027695	C7orf25 (ENSMLUG00000010080)	ENSMLUG00000010086	MRPL32 (ENSMLUG00000010108)	HECW1 (ENSMLUG00000003954)	GIMAP8 (ENSMLUG00000012405)	ENSMLUG00000024808
Greater horseshoe bat	MODERN SPECIES	12	NME8 (ENSRFEG00010019215)	SFRP4 (ENSRFEG00010019328)	EPDR1 (ENSRFEG00010019352)	STARD3NL (ENSRFEG00010019401)	ENSRFEG00010019474	ENSRFEG00010019487	ENSRFEG00010019499	ENSRFEG00010019509	ENSRFEG00010019552	ENSRFEG00010019565	ENSRFEG00010019577	AMPH (ENSRFEG00010019645)	VPS41 (ENSRFEG00010019744) #20	ENSRFEG00010019906	POU6F2 (ENSRFEG00010019962) #21	YAE1 (ENSRFEG00010020105) #22	RALA (ENSRFEG00010020134)	CDK13 (ENSRFEG00010020169)	MPLKIP (ENSRFEG00010020336)	SUGCT (ENSRFEG00010020366)	INHBA (ENSRFEG00010020467)	GLI3 (ENSRFEG00010020493) #36	C7orf25 (ENSRFEG00010020516)	PSMA2 (ENSRFEG00010020543)	ENSRFEG00010020602	HECW1 (ENSRFEG00010020668)	COA1 (ENSRFEG00010020716)	BLVRA (ENSRFEG00010020740)
Megabat	MODERN SPECIES	8084																YAE1 (ENSPVAG00000017851) #22
Atlantogenata	ANCESTRAL SPECIES	7	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b	ENSGT00950000184753	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000171874	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Xenarthra	ANCESTRAL SPECIES	250								ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b	ENSGT00950000184753	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.b.a	ENSGT00940000153143.a.a.e.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000171874	ENSGT00940000157116
Sloth	MODERN SPECIES	9210																YAE1 (ENSCHOG00000002643) #22
Armadillo	MODERN SPECIES	1940	ENSDNOG00000038855	ENSDNOG00000014737	ENSDNOG00000048786	ENSDNOG00000038588	ENSDNOG00000039893	ENSDNOG00000046537	ENSDNOG00000036487	ENSDNOG00000036977	AMPH (ENSDNOG00000045883)	ENSDNOG00000006684 #20	ENSDNOG00000038365 #20	ENSDNOG00000046137	POU6F2 (ENSDNOG00000008057) #21	ENSDNOG00000036702	ENSDNOG00000047994	YAE1 (ENSDNOG00000047546) #22	RALA (ENSDNOG00000046497)	ENSDNOG00000037711	CDK13 (ENSDNOG00000010349)	MPLKIP (ENSDNOG00000033002)	ENSDNOG00000049165	SUGCT (ENSDNOG00000019660)	ENSDNOG00000040442	ENSDNOG00000036221	ENSDNOG00000045281
Afrotheria	ANCESTRAL SPECIES	5	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.a.b	ENSGT00940000153143.a.a.f	ENSGT00950000182882.A.b.a	ENSGT00390000000481.g #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000171874	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00390000011072	ENSGT00390000015821	ENSGT00530000063186.b.a
Afrotheria_a	ANCESTRAL SPECIES	5	ENSGT00390000004417.a	ENSGT00390000008749.e	ENSGT00390000008427	ENSGT00940000155994	ENSGT01030000234518.E.c.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.a.b	ENSGT00940000153143.a.a.f	ENSGT00950000182882.A.b.a	ENSGT00390000000481.g #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000171874	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00390000011072	ENSGT00390000015821	ENSGT00530000063186.b.a
Elephant	MODERN SPECIES	428	ANLN (ENSLAFG00000012688)	AOAH (ENSLAFG00000011259)	ELMO1 (ENSLAFG00000018399)	GPR141 (ENSLAFG00000010412)	ENSLAFG00000028926	NME8 (ENSLAFG00000005939)	SFRP4 (ENSLAFG00000022015)	EPDR1 (ENSLAFG00000007489)	STARD3NL (ENSLAFG00000008145)	ENSLAFG00000027843	ENSLAFG00000025683	ENSLAFG00000032633	AMPH (ENSLAFG00000015646)	VPS41 (ENSLAFG00000015987) #20	POU6F2 (ENSLAFG00000008294) #21	YAE1 (ENSLAFG00000026107) #22	RALA (ENSLAFG00000017942)	CDK13 (ENSLAFG00000017946)	MPLKIP (ENSLAFG00000021487)	ENSLAFG00000001629	INHBA (ENSLAFG00000012737)	GLI3 (ENSLAFG00000008944) #36	C7orf25 (ENSLAFG00000011416)	PSMA2 (ENSLAFG00000011417)	MRPL32 (ENSLAFG00000011427)	ENSLAFG00000016339	ENSLAFG00000008021	STK17A (ENSLAFG00000017171)	BLVRA (ENSLAFG00000011250)	VOPP1 (ENSLAFG00000016853)	LANCL2 (ENSLAFG00000016836)
Hyrax	MODERN SPECIES	8039																YAE1 (ENSPCAG00000002008) #22
Marsupialia	ANCESTRAL SPECIES	14	ENSGT00940000161145	ENSGT00530000063260	ENSGT00940000154839.C	ENSGT00940000158818	ENSGT00940000155552	ENSGT00940000154471.a.b.a.a	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT01030000234518.E.c.b	ENSGT01030000234518.E.c.a	ENSGT00940000155994	ENSGT00390000008427
Marsupialia_b	ANCESTRAL SPECIES	14	ENSGT00940000161145	ENSGT00530000063260	ENSGT00940000154839.C	ENSGT00940000158818	ENSGT00940000155552	ENSGT00940000154471.a.b.a.a	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.d.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT01030000234518.E.c.b	ENSGT01030000234518.E.c.a	ENSGT00940000155994	ENSGT00390000008427
Diprotodontia	ANCESTRAL SPECIES	61						ENSGT00940000155552.b	ENSGT00940000154471.a.b.a.a	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.d.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT01030000234518.E.c.b	ENSGT01030000234518.E.c.a	ENSGT00940000155994	ENSGT00390000008427
Diprotodontia_a	ANCESTRAL SPECIES	10	ENSGT00940000161145	ENSGT00530000063260	ENSGT00940000154839.C	ENSGT00940000158818	ENSGT00940000155552.a.b	ENSGT00940000155552.b	ENSGT00940000154471.a.b.a.a	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.b	ENSGT00940000153143.a.a	ENSGT00950000182882.A.b.a	ENSGT00390000000481 #20	ENSGT00940000156175 #21	ENSGT00390000011176 #22	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870.d.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT01030000234518.E.c.b	ENSGT01030000234518.E.c.a	ENSGT00940000155994.tb	ENSGT00390000008427
koala	MODERN SPECIES	152							ENSPCIG00000023210	BICD2 (ENSPCIG00000023207)	SFRP4 (ENSPCIG00000033685)	ENSPCIG00000023195	STARD3NL (ENSPCIG00000003468)	ENSPCIG00000031115	AMPH (ENSPCIG00000010587)	VPS41 (ENSPCIG00000010608) #20	POU6F2 (ENSPCIG00000035047) #21	YAE1 (ENSPCIG00000009972) #22	RALA (ENSPCIG00000004323)	CDK13 (ENSPCIG00000003007)	MPLKIP (ENSPCIG00000002954)	SUGCT (ENSPCIG00000002929)	INHBA (ENSPCIG00000027590)	GLI3 (ENSPCIG00000027591) #36	PSMA2 (ENSPCIG00000008876)	MRPL32 (ENSPCIG00000008901)	HECW1 (ENSPCIG00000017097)	ENSPCIG00000034872	STK17A (ENSPCIG00000017095)	GPR141 (ENSPCIG00000015085)	ENSPCIG00000033160	ENSPCIG00000000677	AOAH (ENSPCIG00000025938)
Common wonbat	MODERN SPECIES	1053	ACTR8 (ENSVURG00010012535)	IL17RB (ENSVURG00010012547)	CHDH (ENSVURG00010012557)	CACNA1D (ENSVURG00010012579)	ENSVURG00010012644	ENSVURG00010012659	BICD2 (ENSVURG00010012672)	SFRP4 (ENSVURG00010012677)	EPDR1 (ENSVURG00010012685)	STARD3NL (ENSVURG00010012693)	ENSVURG00010012703	ENSVURG00010012712	ENSVURG00010012718	VPS41 (ENSVURG00010012728) #20	POU6F2 (ENSVURG00010012753) #21	YAE1 (ENSVURG00010012778) #22	ENSVURG00010012782	RALA (ENSVURG00010012785)	ENSVURG00010012796	CDK13 (ENSVURG00010012823)	MPLKIP (ENSVURG00010013339)	SUGCT (ENSVURG00010013353)	INHBA (ENSVURG00010013385)	GLI3 (ENSVURG00010013401) #36	C7orf25 (ENSVURG00010013415)	ENSVURG00010013418	MRPL32 (ENSVURG00010013428)	HECW1 (ENSVURG00010013441)	STK17A (ENSVURG00010013459)	ENSVURG00010013470	ENSVURG00010013476
Wallaby	MODERN SPECIES	14906																ENSMEUG00000002360 #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000017675	STARD3NL (ENSSHAG00000003651)	ENSSHAG00000003143	ENSSHAG00000026624	ENSSHAG00000021799	ENSSHAG00000022417	ENSSHAG00000029508	ENSSHAG00000031848	ENSSHAG00000020715	ENSSHAG00000031474	ENSSHAG00000028189	ENSSHAG00000005261	ENSSHAG00000026440	VPS41 (ENSSHAG00000003647) #20	POU6F2 (ENSSHAG00000026712) #21	YAE1 (ENSSHAG00000021352) #22	RALA (ENSSHAG00000027620)	CDK13 (ENSSHAG00000012296)	MPLKIP (ENSSHAG00000021509)	SUGCT (ENSSHAG00000001316)	INHBA (ENSSHAG00000026238)	GLI3 (ENSSHAG00000009727) #36	C7orf25 (ENSSHAG00000027763)	PSMA2 (ENSSHAG00000005564)	ENSSHAG00000005433	HECW1 (ENSSHAG00000026205)	ENSSHAG00000031695	ENSSHAG00000001536	ENSSHAG00000022454	AOAH (ENSSHAG00000022160)	MATCAP2 (ENSSHAG00000003634)
Opossum	MODERN SPECIES	5	ENSMODG00000012495	ACTR8 (ENSMODG00000012508)	ENSMODG00000012517	CHDH (ENSMODG00000012523)	ENSMODG00000012546	TKT (ENSMODG00000012573)	BICD2 (ENSMODG00000012581)	ENSMODG00000046040	SFRP4 (ENSMODG00000012593)	ENSMODG00000012599	STARD3NL (ENSMODG00000012602)	ENSMODG00000012605	AMPH (ENSMODG00000012613)	VPS41 (ENSMODG00000012622) #20	POU6F2 (ENSMODG00000043266) #21	YAE1 (ENSMODG00000037058) #22	ENSMODG00000012643	CDK13 (ENSMODG00000012657)	MPLKIP (ENSMODG00000024082)	ENSMODG00000012662	ENSMODG00000012668	LSM5 (ENSMODG00000013274)	PDE1C (ENSMODG00000013284)	ENSMODG00000024079	ENSMODG00000013286	ENSMODG00000013297	NEUROD6 (ENSMODG00000013299)	ITGA9 (ENSMODG00000013303)	GOLGA4 (ENSMODG00000013315)	ENSMODG00000013326	MLH1 (ENSMODG00000013353)
Anura	ANCESTRAL SPECIES	71	ENSGT00950000182882.A.b.a	ENSGT00970000195704	ENSGT00940000153143.a.b.b	ENSGT00940000155476.s	ENSGT00940000161910	ENSGT00940000160766	ENSGT01030000234518.E.c.a.a	ENSGT00940000155994	ENSGT00390000008427	ENSGT00390000008749.e	ENSGT00390000004417.a.l	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00390000017671.a	ENSGT00940000158741	ENSGT00390000011176 #22	ENSGT00660000095569.c	ENSGT00940000155142	ENSGT00940000157852	ENSGT00390000002582.o	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925 #36	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821
Leishan spiny toad	MODERN SPECIES	8	EPDR1 (ENSLLEG00000013696)	SFRP4 (ENSLLEG00000013662)	ENSLLEG00000013627	ENSLLEG00000013590	ENSLLEG00000013561	ELMO1 (ENSLLEG00000012811)	AOAH (ENSLLEG00000012470)	ANLN (ENSLLEG00000011963)	MATCAP2 (ENSLLEG00000011791)	EEPD1 (ENSLLEG00000011683)	ENSLLEG00000011650	SEPTIN7 (ENSLLEG00000010750)	ENSLLEG00000010654	HERPUD2 (ENSLLEG00000010499)	TBX20 (ENSLLEG00000010423)	YAE1 (ENSLLEG00000010386) #22	ENSLLEG00000010159	ENSLLEG00000010126	ENSLLEG00000010099	RALA (ENSLLEG00000010011)	CDK13 (ENSLLEG00000009879)	MPLKIP (ENSLLEG00000009797)	ENSLLEG00000009770	ENSLLEG00000009741	SUGCT (ENSLLEG00000009369)	ENSLLEG00000009328	ENSLLEG00000009313	INHBA (ENSLLEG00000009251)	GLI3 (ENSLLEG00000008862) #36	ENSLLEG00000008818	ENSLLEG00000008792