Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00940000159006 #9	ENSGT00520000058554	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00940000155261 #12	ENSGT00940000157455 #13	ENSGT00940000157981.b	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Glires	ANCESTRAL SPECIES	4	ENSGT00940000154129 #8	ENSGT00940000159006 #9	ENSGT00520000058554	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00940000155261 #12	ENSGT00940000157455 #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Rodentia	ANCESTRAL SPECIES	5	ENSGT00940000159006 #9	ENSGT00520000058554	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00900000143176	ENSGT00940000155261 #12	ENSGT00940000157455 #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000159006 #9	ENSGT00520000058554	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00900000143176	ENSGT00940000155261 #12	ENSGT00940000157455 #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000159006 #9	ENSGT00520000058554	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00900000143176	ENSGT00940000155261 #12	ENSGT00940000157455 #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Muroidea	ANCESTRAL SPECIES	31	ENSGT00940000159006 #9	ENSGT00520000058554	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00900000143176	ENSGT00940000155261 #12	ENSGT00940000157455 #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00940000159006 #9	ENSGT00520000058554	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00900000143176	ENSGT00940000155261 #12	ENSGT00940000157455 #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00940000159006 #9	ENSGT00520000058554	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00900000143176	ENSGT00940000155261 #12	ENSGT00940000157455.`b.b #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816.a #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00730000113467 #7	ENSGT00940000154129.m #8	ENSGT00940000159006 #9	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00940000155261 #12	ENSGT00940000157455.`b.b #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816.a #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Northern American deer mouse	MODERN SPECIES	12	Prr13 (ENSPEMG00000017327) #7	ENSPEMG00000013236 #8	Map3k12 (ENSPEMG00000000990) #9	Tarbp2 (ENSPEMG00000014285) #10	Npff (ENSPEMG00000029282) #11	Atf7 (ENSPEMG00000016864) #12	ENSPEMG00000017690 #13	Calcoco1 (ENSPEMG00000014813) #14	Hoxc13 (ENSPEMG00000005314) #15	Hoxc12 (ENSPEMG00000013217) #16	Hoxc11 (ENSPEMG00000011561) #17	Hoxc10 (ENSPEMG00000013609) #18	Hoxc9 (ENSPEMG00000025549) #19	Hoxc8 (ENSPEMG00000026440) #20	Hoxc6 (ENSPEMG00000026208) #21	Hoxc5 (ENSPEMG00000026211) #22	Hoxc4 (ENSPEMG00000015515) #23	ENSPEMG00000028406 #24	Smug1 (ENSPEMG00000027645) #25	Cbx5 (ENSPEMG00000015648) #26	Hnrnpa1 (ENSPEMG00000012402) #27	Nfe2 (ENSPEMG00000011564) #28	Copz1 (ENSPEMG00000009405) #29	Gpr84 (ENSPEMG00000000618) #30	Zfp385a (ENSPEMG00000018499) #31	Itga5 (ENSPEMG00000000509) #32	Gtsf1 (ENSPEMG00000009595) #33	ENSPEMG00000010828 #34	Nckap1l (ENSPEMG00000008686) #35	Pde1b (ENSPEMG00000018802) #36	Ppp1r1a (ENSPEMG00000000773) #37
Prairie vole	MODERN SPECIES	2	Prr13 (ENSMOCG00000014216) #7	ENSMOCG00000010409 #8	Map3k12 (ENSMOCG00000015681) #9	Tarbp2 (ENSMOCG00000003691) #10	Npff (ENSMOCG00000018084) #11	Atf7 (ENSMOCG00000014166) #12	Atp5g2 (ENSMOCG00000012641) ##13	Calcoco1 (ENSMOCG00000010205) #14	Hoxc13 (ENSMOCG00000001084) #15	Hoxc12 (ENSMOCG00000016790) #16	Hoxc11 (ENSMOCG00000010091) #17	Hoxc10 (ENSMOCG00000009084) #18	Hoxc9 (ENSMOCG00000019623) #19	Hoxc8 (ENSMOCG00000016249) #20	Hoxc6 (ENSMOCG00000018874) #21	Hoxc5 (ENSMOCG00000013422) #22	Hoxc4 (ENSMOCG00000014873) #23	Smug1 (ENSMOCG00000017727) #25	ENSMOCG00000015075 #26	Hnrnpa1 (ENSMOCG00000004275) #27	Nfe2 (ENSMOCG00000019128) #28	Copz1 (ENSMOCG00000018095) #29	ENSMOCG00000011736	Zfp385a (ENSMOCG00000006959) #31	Itga5 (ENSMOCG00000021919) #32	ENSMOCG00000010096	Gtsf1 (ENSMOCG00000018889) #33	Gtsf2 (ENSMOCG00000014770) #34	ENSMOCG00000011883 #35	ENSMOCG00000014544 #35	Pde1b (ENSMOCG00000008136) #36
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000159006 #9	ENSGT00520000058554	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00900000143176	ENSGT00940000155261 #12	ENSGT00940000157455.`b.b #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816.a #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Chinese hamster chok1gshd	MODERN SPECIES	1	Map3k12 (ENSCGRG00001012727) #9	Gm10337 (ENSCGRG00001010232)	TARBP2 (ENSCGRG00001011856) #10	Npff (ENSCGRG00001012802) #11	ENSCGRG00001015358	Atf7 (ENSCGRG00001016192) #12	ENSCGRG00001017197 ##13	Calcoco1 (ENSCGRG00001014119) #14	Hoxc13 (ENSCGRG00001013867) #15	Hoxc12 (ENSCGRG00001014493) #16	Hoxc11 (ENSCGRG00001013516) #17	Hoxc10 (ENSCGRG00001013473) #18	Hoxc9 (ENSCGRG00001013912) #19	Hoxc8 (ENSCGRG00001014315) #20	Hoxc6 (ENSCGRG00001014416) #21	Hoxc5 (ENSCGRG00001012661) #22	Hoxc4 (ENSCGRG00001013095) #23	Smug1 (ENSCGRG00001016146) #25	Cbx5 (ENSCGRG00001019018) #26	Hnrnpa1 (ENSCGRG00001013129) #27	Nfe2 (ENSCGRG00001022465) #28	Copz1 (ENSCGRG00001013501) #29	ENSCGRG00001009425	Zfp385a (ENSCGRG00001015539) #31	Itga5 (ENSCGRG00001017691) #32	Gtsf1 (ENSCGRG00001013814) #33	Gtsf2 (ENSCGRG00001016136) #34	Nckap1l (ENSCGRG00001014386) #35	Pde1b (ENSCGRG00001017137) #36	Ppp1r1a (ENSCGRG00001013456) #37	Glycam1 (ENSCGRG00001016454)
Golden Hamster	MODERN SPECIES	626	Sp1 (ENSMAUG00000018418)	Prr13 (ENSMAUG00000018724) #7	ENSMAUG00000018893 #8	Map3k12 (ENSMAUG00000019237) #9	Tarbp2 (ENSMAUG00000019805) #10	Atf7 (ENSMAUG00000020350) #12	ENSMAUG00000020460 #13	Calcoco1 (ENSMAUG00000013934) #14	Hoxc13 (ENSMAUG00000014990) #15	Hoxc12 (ENSMAUG00000015132) #16	Hoxc11 (ENSMAUG00000015214) #17	Hoxc10 (ENSMAUG00000015971) #18	Hoxc9 (ENSMAUG00000016070) #19	Hoxc8 (ENSMAUG00000016196) #20	Hoxc6 (ENSMAUG00000018788) #21	Hoxc5 (ENSMAUG00000018873) #22	Hoxc4 (ENSMAUG00000018883) #23	Smug1 (ENSMAUG00000018792) #25	Cbx5 (ENSMAUG00000018962) #26	Hnrnpa1 (ENSMAUG00000019184) #27	Nfe2 (ENSMAUG00000020513) #28	ENSMAUG00000020778 #29	ENSMAUG00000010848	Zfp385a (ENSMAUG00000015687) #31	Itga5 (ENSMAUG00000017255) #32	Gtsf1 (ENSMAUG00000018746) #33	ENSMAUG00000017189 #34	Nckap1l (ENSMAUG00000018822) #35	Pde1b (ENSMAUG00000019170) #36	Ppp1r1a (ENSMAUG00000018584) #37	Tpp2 (ENSMAUG00000019359)
Murinae	ANCESTRAL SPECIES	10	ENSGT00940000154129.m #8	ENSGT00520000058554	ENSGT00940000159006 #9	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00940000155261 #12	ENSGT00940000157455 #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Rat	MODERN SPECIES	17	Pcbp2 (ENSRNOG00000036852) #8	Map3k12 (ENSRNOG00000015134) #9	Gm10337 (ENSRNOG00000063518)	Tarbp2 (ENSRNOG00000042355) #10	Atf7 (ENSRNOG00000015269) #12	Atp5mc2 (ENSRNOG00000015320) #13	Calcoco1 (ENSRNOG00000015447) #14	AABR07058934.1 (ENSRNOG00000016100)	Hoxc13 (ENSRNOG00000028679) #15	Hoxc12 (ENSRNOG00000016116) #16	Hoxc11 (ENSRNOG00000016141) #17	Hoxc10 (ENSRNOG00000016149) #18	Hoxc9 (ENSRNOG00000016199) #19	Hoxc8 (ENSRNOG00000028619) #20	Hoxc6 (ENSRNOG00000063956) #21	Hoxc5 (ENSRNOG00000016598) #22	Hoxc4 (ENSRNOG00000016613) #23	Smug1 (ENSRNOG00000036842) #25	Cbx5 (ENSRNOG00000036841) #26	Hnrnpa1 (ENSRNOG00000036839) #27	Nfe2 (ENSRNOG00000036837) #28	AABR07058937.1 (ENSRNOG00000036836)	Copz1 (ENSRNOG00000036835) #29	Gpr84 (ENSRNOG00000036834)	Zfp385a (ENSRNOG00000036833) #31	Itga5 (ENSRNOG00000057451) #32	Gtsf1 (ENSRNOG00000036831) #33	Gtsf2 (ENSRNOG00000036830) #34	Nckap1l (ENSRNOG00000036829) #35	Pde1b (ENSRNOG00000036828) #36	Ppp1r1a (ENSRNOG00000036827) #37
Mus	ANCESTRAL SPECIES	11	ENSGT00940000154129.m #8	ENSGT00520000058554	ENSGT00940000159006 #9	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00940000155261 #12	ENSGT00940000157455 #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000159286.b.b #30	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Mus_A	ANCESTRAL SPECIES	13	ENSGT00940000154129.m #8	ENSGT00520000058554	ENSGT00940000159006 #9	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00940000155261.e.a #12	ENSGT00940000157455 #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000159286.b.b #30	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Mus_B	ANCESTRAL SPECIES	12	ENSGT00940000154129.m #8	ENSGT00520000058554	ENSGT00940000159006 #9	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00940000155261.e.a #12	ENSGT00940000157455 #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000159286.b.b #30	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Mouse	MODERN SPECIES	6	Sp1 (ENSMUSG00000001280)	Amhr2 (ENSMUSG00000023047)	Prr13 (ENSMUSG00000023048) #7	Pcbp2 (ENSMUSG00000056851) #8	Map3k12 (ENSMUSG00000023050) #9	Gm10337 (ENSMUSG00000071586)	Tarbp2 (ENSMUSG00000023051) #10	Npff (ENSMUSG00000023052) #11	Atf7 (ENSMUSG00000099083) #12	Atp5g2 (ENSMUSG00000062683) #13	Calcoco1 (ENSMUSG00000023055) #14	Hoxc13 (ENSMUSG00000001655) #15	Hoxc12 (ENSMUSG00000050328) #16	Hoxc11 (ENSMUSG00000001656) #17	Hoxc10 (ENSMUSG00000022484) #18	Hoxc5 (ENSMUSG00000022485) #22	Hoxc9 (ENSMUSG00000036139) #19	Hoxc8 (ENSMUSG00000001657) #20	Hoxc6 (ENSMUSG00000001661) #21	Hoxc4 (ENSMUSG00000075394) #23	Smug1 (ENSMUSG00000036061) #25	Cbx5 (ENSMUSG00000009575) #26	Hnrnpa1 (ENSMUSG00000046434) #27	Nfe2 (ENSMUSG00000058794) #28	Copz1 (ENSMUSG00000060992) #29	Gpr84 (ENSMUSG00000063234) #30	Zfp385a (ENSMUSG00000000552) #31	Itga5 (ENSMUSG00000000555) #32	Gtsf1 (ENSMUSG00000022487) #33	Gtsf2 (ENSMUSG00000053508) #34	Nckap1l (ENSMUSG00000022488) #35
Mus_C	ANCESTRAL SPECIES	17	ENSGT00940000154129.m #8	ENSGT00520000058554	ENSGT00940000159006 #9	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00940000155261.e.a #12	ENSGT00940000157455.y #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000159286.b.b #30	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
spretus	MODERN SPECIES	6	Amhr2 (MGP_SPRETEiJ_G0021244)	MGP_SPRETEiJ_G0021245 #7	Pcbp2 (MGP_SPRETEiJ_G0021246) #8	Map3k12 (MGP_SPRETEiJ_G0021247) #9	Gm10337 (MGP_SPRETEiJ_G0021248)	Tarbp2 (MGP_SPRETEiJ_G0021249) #10	Npff (MGP_SPRETEiJ_G0021250) #11	MGP_SPRETEiJ_G0021251 #12	MGP_SPRETEiJ_G0021252 #12	MGP_SPRETEiJ_G0021253 #13	Calcoco1 (MGP_SPRETEiJ_G0021254) #14	Hoxc13 (MGP_SPRETEiJ_G0021255) #15	Hoxc12 (MGP_SPRETEiJ_G0021256) #16	Hoxc11 (MGP_SPRETEiJ_G0021257) #17	Hoxc10 (MGP_SPRETEiJ_G0021258) #18	Hoxc5 (MGP_SPRETEiJ_G0021259) #22	Hoxc9 (MGP_SPRETEiJ_G0021260) #19	Hoxc8 (MGP_SPRETEiJ_G0021261) #20	Hoxc6 (MGP_SPRETEiJ_G0021262) #21	Hoxc4 (MGP_SPRETEiJ_G0021263) #23	Smug1 (MGP_SPRETEiJ_G0021264) #25	MGP_SPRETEiJ_G0021265 #26	Hnrnpa1 (MGP_SPRETEiJ_G0021266) #27	Nfe2 (MGP_SPRETEiJ_G0021267) #28	Copz1 (MGP_SPRETEiJ_G0021268) #29	Gpr84 (MGP_SPRETEiJ_G0021269) #30	Zfp385a (MGP_SPRETEiJ_G0021270) #31	Itga5 (MGP_SPRETEiJ_G0021271) #32	Gtsf1 (MGP_SPRETEiJ_G0021272) #33	Gtsf2 (MGP_SPRETEiJ_G0021273) #34	Nckap1l (MGP_SPRETEiJ_G0021274) #35
Steppe mouse	MODERN SPECIES	2761				ENSMSIG00000010172 #13	Calcoco1 (ENSMSIG00000010197) #14	ENSMSIG00000010371	ENSMSIG00000010395	ENSMSIG00000010401	Hoxc13 (ENSMSIG00000010407) #15	Hoxc12 (ENSMSIG00000010422) #16	Hoxc11 (ENSMSIG00000010467) #17	Hoxc10 (ENSMSIG00000010480) #18	Hoxc9 (ENSMSIG00000010497) #19	Hoxc8 (ENSMSIG00000010506) #20	Hoxc6 (ENSMSIG00000010510) #21	Hoxc5 (ENSMSIG00000010530) #22	Hoxc4 (ENSMSIG00000010551) #23	ENSMSIG00000010566	Smug1 (ENSMSIG00000010575) #25	Cbx5 (ENSMSIG00000010608) #26	Hnrnpa1 (ENSMSIG00000010644) #27	Nfe2 (ENSMSIG00000010777) #28	Copz1 (ENSMSIG00000010825) #29	Gpr84 (ENSMSIG00000010839) #30	ENSMSIG00000010850 #31	Itga5 (ENSMSIG00000010915) #32	Gtsf1 (ENSMSIG00000010994) #33	Gtsf2 (ENSMSIG00000011099) #34	Nckap1l (ENSMSIG00000011126) #35	Pde1b (ENSMSIG00000011263) #36	Ppp1r1a (ENSMSIG00000011322) #37
Ryukyu mouse	MODERN SPECIES	6	Amhr2 (MGP_CAROLIEiJ_G0020351)	Prr13 (MGP_CAROLIEiJ_G0020352) #7	Pcbp2 (MGP_CAROLIEiJ_G0020353) #8	MGP_CAROLIEiJ_G0020354	Gm10337 (MGP_CAROLIEiJ_G0020355)	Tarbp2 (MGP_CAROLIEiJ_G0020356) #10	Npff (MGP_CAROLIEiJ_G0020357) #11	MGP_CAROLIEiJ_G0020358 #12	MGP_CAROLIEiJ_G0020359 #12	Atp5g2 (MGP_CAROLIEiJ_G0020360) #13	Calcoco1 (MGP_CAROLIEiJ_G0020361) #14	Hoxc13 (MGP_CAROLIEiJ_G0020362) #15	Hoxc12 (MGP_CAROLIEiJ_G0020363) #16	Hoxc11 (MGP_CAROLIEiJ_G0020364) #17	Hoxc10 (MGP_CAROLIEiJ_G0020365) #18	Hoxc5 (MGP_CAROLIEiJ_G0020366) #22	Hoxc9 (MGP_CAROLIEiJ_G0020367) #19	Hoxc8 (MGP_CAROLIEiJ_G0020368) #20	Hoxc6 (MGP_CAROLIEiJ_G0020369) #21	Hoxc4 (MGP_CAROLIEiJ_G0020370) #23	Smug1 (MGP_CAROLIEiJ_G0020371) #25	Cbx5 (MGP_CAROLIEiJ_G0020372) #26	MGP_CAROLIEiJ_G0020373 ##27	Nfe2 (MGP_CAROLIEiJ_G0020374) #28	Copz1 (MGP_CAROLIEiJ_G0020375) #29	Gpr84 (MGP_CAROLIEiJ_G0020376) #30	Zfp385a (MGP_CAROLIEiJ_G0020377) #31	Itga5 (MGP_CAROLIEiJ_G0020378) #32	Gtsf1 (MGP_CAROLIEiJ_G0020379) #33	Gtsf2 (MGP_CAROLIEiJ_G0020380) #34	Nckap1l (MGP_CAROLIEiJ_G0020381) #35
Shrew mouse	MODERN SPECIES	8	Amhr2 (MGP_PahariEiJ_G0020350)	Prr13 (MGP_PahariEiJ_G0020351) #7	MGP_PahariEiJ_G0020352 #8	Map3k12 (MGP_PahariEiJ_G0020353) #9	Gm10337 (MGP_PahariEiJ_G0020354)	Tarbp2 (MGP_PahariEiJ_G0020355) #10	Npff (MGP_PahariEiJ_G0020356) #11	MGP_PahariEiJ_G0020357 #12	MGP_PahariEiJ_G0020358 #12	Atp5g2 (MGP_PahariEiJ_G0020359) #13	Calcoco1 (MGP_PahariEiJ_G0020360) #14	Hoxc13 (MGP_PahariEiJ_G0020361) #15	Hoxc12 (MGP_PahariEiJ_G0020362) #16	Hoxc11 (MGP_PahariEiJ_G0020363) #17	Hoxc10 (MGP_PahariEiJ_G0020364) #18	Hoxc5 (MGP_PahariEiJ_G0020365) #22	Hoxc9 (MGP_PahariEiJ_G0020366) #19	Hoxc8 (MGP_PahariEiJ_G0020367) #20	Hoxc6 (MGP_PahariEiJ_G0020368) #21	Hoxc4 (MGP_PahariEiJ_G0020369) #23	Smug1 (MGP_PahariEiJ_G0020370) #25	Cbx5 (MGP_PahariEiJ_G0020371) #26	MGP_PahariEiJ_G0020372 ##27	Nfe2 (MGP_PahariEiJ_G0020373) #28	Copz1 (MGP_PahariEiJ_G0020374) #29	Gpr84 (MGP_PahariEiJ_G0020375) #30	Zfp385a (MGP_PahariEiJ_G0020376) #31	Itga5 (MGP_PahariEiJ_G0020377) #32	Gtsf1 (MGP_PahariEiJ_G0020378) #33	Gtsf2 (MGP_PahariEiJ_G0020379) #34	Nckap1l (MGP_PahariEiJ_G0020380) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	441	Pcbp2 (ENSNGAG00000012054) #8	Map3k12 (ENSNGAG00000017001) #9	ENSNGAG00000017769 #10	Npff (ENSNGAG00000019691) #11	ENSNGAG00000016268	Atf7 (ENSNGAG00000018161) #12	ENSNGAG00000020790 #13	Calcoco1 (ENSNGAG00000022012) #14	Hoxc13 (ENSNGAG00000022328) #15	Hoxc12 (ENSNGAG00000022515) #16	Hoxc11 (ENSNGAG00000022627) #17	Hoxc10 (ENSNGAG00000022718) #18	Hoxc9 (ENSNGAG00000012023) #19	Hoxc8 (ENSNGAG00000012817) #20	Hoxc6 (ENSNGAG00000013313) #21	Hoxc5 (ENSNGAG00000015707) #22	Hoxc4 (ENSNGAG00000016300) #23	Smug1 (ENSNGAG00000019663) #25	Cbx5 (ENSNGAG00000016802) #26	Hnrnpa1 (ENSNGAG00000017304) #27	Nfe2 (ENSNGAG00000018088) #28	Copz1 (ENSNGAG00000000660) #29	ENSNGAG00000004911	Zfp385a (ENSNGAG00000007963) #31	Itga5 (ENSNGAG00000013929) #32	Gtsf1 (ENSNGAG00000014213) #33	Gtsf2 (ENSNGAG00000008752) #34	Nckap1l (ENSNGAG00000011702) #35	Pde1b (ENSNGAG00000020387) #36	Ppp1r1a (ENSNGAG00000023027) #37
Lesser Egyptian jerboa	MODERN SPECIES	42	Gm10337 (ENSJJAG00000003834)	ENSJJAG00000007198 #10	Npff (ENSJJAG00000010307) #11	ENSJJAG00000012378	Atf7 (ENSJJAG00000014294) #12	Atp5g2 (ENSJJAG00000009417) #13	Calcoco1 (ENSJJAG00000011789) #14	Hoxc13 (ENSJJAG00000023584) #15	Hoxc12 (ENSJJAG00000024305) #16	Hoxc11 (ENSJJAG00000007017) #17	Hoxc10 (ENSJJAG00000011018) #18	Hoxc9 (ENSJJAG00000020953) #19	Hoxc8 (ENSJJAG00000011647) #20	Hoxc4 (ENSJJAG00000017548) #23	Hoxc6 (ENSJJAG00000021603) #21	Hoxc5 (ENSJJAG00000020509) #22	Smug1 (ENSJJAG00000022700) #25	Cbx5 (ENSJJAG00000016164) #26	Hnrnpa1 (ENSJJAG00000024047) #27	Nfe2 (ENSJJAG00000011311) #28	Copz1 (ENSJJAG00000021645) #29	ENSJJAG00000001613	Zfp385a (ENSJJAG00000021761) #31	Itga5 (ENSJJAG00000013501) #32	ENSJJAG00000003323 #33	Gtsf2 (ENSJJAG00000016320) #34	ENSJJAG00000016097 #35	ENSJJAG00000011759 #35	Pde1b (ENSJJAG00000015140) #36	ENSJJAG00000022930 #37	Glycam1 (ENSJJAG00000016549)
Kangaroo rat	MODERN SPECIES	474	Pcbp2 (ENSDORG00000001384) #8	Map3k12 (ENSDORG00000001389) #9	Tarbp2 (ENSDORG00000001390) #10	Npff (ENSDORG00000027814) #11	Atf7 (ENSDORG00000001395) #12	Atp5g2 (ENSDORG00000002955) #13	Calcoco1 (ENSDORG00000002957) #14	Hoxc13 (ENSDORG00000023942) #15	Hoxc12 (ENSDORG00000026466) #16	Hoxc11 (ENSDORG00000006990) #17	Hoxc10 (ENSDORG00000006992) #18	Hoxc9 (ENSDORG00000028578) #19	Hoxc8 (ENSDORG00000023838) #20	Hoxc4 (ENSDORG00000007001) #23	Hoxc6 (ENSDORG00000027256) #21	Hoxc5 (ENSDORG00000006999) #22	Smug1 (ENSDORG00000024701) #25	Cbx5 (ENSDORG00000010625) #26	ENSDORG00000027821	Nfe2 (ENSDORG00000010629) #28	Copz1 (ENSDORG00000010630) #29	ENSDORG00000010631	Zfp385a (ENSDORG00000027646) #31	Itga5 (ENSDORG00000008261) #32	Gtsf1 (ENSDORG00000003228) #33	Gtsf2 (ENSDORG00000026087) #34	Nckap1l (ENSDORG00000002123) #35	Pde1b (ENSDORG00000002126) #36	Ppp1r1a (ENSDORG00000002128) #37
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00940000159006 #9	ENSGT00520000058554	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00900000143176	ENSGT00940000155261 #12	ENSGT00940000157981.b	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Sciuridae	ANCESTRAL SPECIES	15	ENSGT00940000154129.m #8	ENSGT00940000159006 #9	ENSGT00520000058554	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00940000155261 #12	ENSGT00940000157455 #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.a.a.z ##27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Marmotini	ANCESTRAL SPECIES	19	ENSGT00940000154129.m.s #8	ENSGT00940000159006 #9	ENSGT00520000058554	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00940000155261 #12	ENSGT00940000157455 #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.a.a.z ##27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816.f #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Marmotini_b	ANCESTRAL SPECIES	11	ENSGT00940000154129.m.s #8	ENSGT00940000159006 #9	ENSGT00520000058554	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00940000155261 #12	ENSGT00940000157455 #13	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.a.a.z ##27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816.f #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00520000060242
Squirrel	MODERN SPECIES	112	PRR13 (ENSSTOG00000003624)	ENSSTOG00000003635 #8	MAP3K12 (ENSSTOG00000023587) #9	ENSSTOG00000025374	TARBP2 (ENSSTOG00000003678) #10	NPFF (ENSSTOG00000032315) #11	ATF7 (ENSSTOG00000006788) #12	ATP5MC2 (ENSSTOG00000008217) #13	CALCOCO1 (ENSSTOG00000007150) #14	HOXC12 (ENSSTOG00000019478) #16	HOXC11 (ENSSTOG00000028958) #17	HOXC10 (ENSSTOG00000012545) #18	HOXC9 (ENSSTOG00000012548) #19	HOXC8 (ENSSTOG00000012551) #20	HOXC6 (ENSSTOG00000016337) #21	HOXC5 (ENSSTOG00000016336) #22	HOXC4 (ENSSTOG00000020156) #23	SMUG1 (ENSSTOG00000004542) #25	CBX5 (ENSSTOG00000014668) #26	ENSSTOG00000006551 ##27	NFE2 (ENSSTOG00000012435) #28	COPZ1 (ENSSTOG00000021313) #29	GPR84 (ENSSTOG00000014678)	ZNF385A (ENSSTOG00000023730) #31	ITGA5 (ENSSTOG00000008042) #32	GTSF1 (ENSSTOG00000025170) #33	ENSSTOG00000030158 #34	NCKAP1L (ENSSTOG00000027248) #35	PDE1B (ENSSTOG00000008136) #36	PPP1R1A (ENSSTOG00000008155) #37
Arctic ground squirrel	MODERN SPECIES	202	ENSUPAG00010020714 #8	ENSUPAG00010020704	MAP3K12 (ENSUPAG00010020680) #9	TARBP2 (ENSUPAG00010020659) #10	NPFF (ENSUPAG00010020645) #11	ATF7 (ENSUPAG00010020626) #12	ENSUPAG00010020616 #13	CALCOCO1 (ENSUPAG00010020573) #14	HOXC13 (ENSUPAG00010020570) #15	HOXC12 (ENSUPAG00010020565) #16	HOXC11 (ENSUPAG00010020543) #17	HOXC10 (ENSUPAG00010020535) #18	HOXC9 (ENSUPAG00010020530) #19	HOXC8 (ENSUPAG00010020527) #20	HOXC6 (ENSUPAG00010020523) #21	HOXC5 (ENSUPAG00010020519) #22	HOXC4 (ENSUPAG00010020515) #23	SMUG1 (ENSUPAG00010020511) #25	CBX5 (ENSUPAG00010020504) #26	ENSUPAG00010020486 ##27	NFE2 (ENSUPAG00010020483) #28	COPZ1 (ENSUPAG00010020473) #29	ENSUPAG00010020470 #30	ZNF385A (ENSUPAG00010020449) #31	ITGA5 (ENSUPAG00010020413) #32	GTSF1 (ENSUPAG00010020381) #33	ENSUPAG00010020372 #34	NCKAP1L (ENSUPAG00010020355) #35	PDE1B (ENSUPAG00010020332) #36	ENSUPAG00010020311 #37	ENSUPAG00010020301
Alpin marmot	MODERN SPECIES	34	PRR13 (ENSMMMG00000002834)	ENSMMMG00000002876 #8	MAP3K12 (ENSMMMG00000003252) #9	ENSMMMG00000003318	TARBP2 (ENSMMMG00000003329) #10	NPFF (ENSMMMG00000003352) #11	ATF7 (ENSMMMG00000003376) #12	ATP5MC2 (ENSMMMG00000003392) #13	CALCOCO1 (ENSMMMG00000003404) #14	ENSMMMG00000003492	HOXC12 (ENSMMMG00000003500) #16	HOXC11 (ENSMMMG00000003528) #17	HOXC10 (ENSMMMG00000003541) #18	HOXC8 (ENSMMMG00000003555) #20	HOXC6 (ENSMMMG00000003562) #21	HOXC5 (ENSMMMG00000003567) #22	HOXC4 (ENSMMMG00000003571) #23	SMUG1 (ENSMMMG00000003585) #25	CBX5 (ENSMMMG00000003604) #26	ENSMMMG00000003625 ##27	NFE2 (ENSMMMG00000003708) #28	COPZ1 (ENSMMMG00000003722) #29	ENSMMMG00000003736 #30	ZNF385A (ENSMMMG00000003744) #31	ITGA5 (ENSMMMG00000003779) #32	ENSMMMG00000003844 #34	NCKAP1L (ENSMMMG00000003866) #35	PDE1B (ENSMMMG00000003896) #36	ENSMMMG00000003982 #37	ENSMMMG00000003992	ENSMMMG00000004003
Eurasian red squirrel	MODERN SPECIES	14	SP1 (ENSSVLG00005023931)	AMHR2 (ENSSVLG00005023965)	PRR13 (ENSSVLG00005024006)	ENSSVLG00005024125 #8	MAP3K12 (ENSSVLG00005024636) #9	TARBP2 (ENSSVLG00005024730) #10	NPFF (ENSSVLG00005024757) #11	ATF7 (ENSSVLG00005024779) #12	ENSSVLG00005024802 #13	CALCOCO1 (ENSSVLG00005024843) #14	HOXC13 (ENSSVLG00005024880) #15	HOXC10 (ENSSVLG00005024954) #18	HOXC9 (ENSSVLG00005024979) #19	HOXC8 (ENSSVLG00005024998) #20	HOXC6 (ENSSVLG00005025017) #21	HOXC5 (ENSSVLG00005000186) #22	HOXC4 (ENSSVLG00005000207) #23	SMUG1 (ENSSVLG00005000267) #25	CBX5 (ENSSVLG00005000307) #26	ENSSVLG00005000496 #27	NFE2 (ENSSVLG00005000622) #28	COPZ1 (ENSSVLG00005000750) #29	GPR84 (ENSSVLG00005000857)	ZNF385A (ENSSVLG00005000920) #31	ITGA5 (ENSSVLG00005001034) #32	GTSF1 (ENSSVLG00005001091) #33	NCKAP1L (ENSSVLG00005001199) #35	ENSSVLG00005001287 #34	PDE1B (ENSSVLG00005001330) #36	PPP1R1A (ENSSVLG00005001371) #37	TESPA1 (ENSSVLG00005001405)
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00520000058554	ENSGT00940000159006 #9	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00900000143176	ENSGT00940000155261 #12	ENSGT00940000157981.b	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00940000160763
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00520000058554	ENSGT00940000159006 #9	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00900000143176	ENSGT00940000155261 #12	ENSGT00940000157981.b	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00940000160763
Guinea pig	MODERN SPECIES	9	PCBP2 (ENSCPOG00000000967) #8	ENSCPOG00000032672	MAP3K12 (ENSCPOG00000000971) #9	NPFF (ENSCPOG00000032864) #11	TARBP2 (ENSCPOG00000001009) #10	ENSCPOG00000033904	ATF7 (ENSCPOG00000039679) #12	ATP5MC2 (ENSCPOG00000038171) #13	CALCOCO1 (ENSCPOG00000021587) #14	HOXC13 (ENSCPOG00000020390) #15	HOXC12 (ENSCPOG00000026314) #16	HOXC11 (ENSCPOG00000033525) #17	HOXC10 (ENSCPOG00000009442) #18	HOXC8 (ENSCPOG00000039628) #20	HOXC6 (ENSCPOG00000032302) #21	HOXC5 (ENSCPOG00000009447) #22	HOXC4 (ENSCPOG00000035649) #23	SMUG1 (ENSCPOG00000034157) #25	CBX5 (ENSCPOG00000038461) #26	HNRNPA1 (ENSCPOG00000020972) #27	NFE2 (ENSCPOG00000030518) #28	COPZ1 (ENSCPOG00000007740) #29	GPR84 (ENSCPOG00000020750)	ZNF385A (ENSCPOG00000023870) #31	ITGA5 (ENSCPOG00000007748) #32	GTSF1 (ENSCPOG00000008743) #33	ENSCPOG00000023851 #34	NCKAP1L (ENSCPOG00000008748) #35	PDE1B (ENSCPOG00000015102) #36	PPP1R1A (ENSCPOG00000015100) #37	TESPA1 (ENSCPOG00000002912)
Hystricomorpha_b	ANCESTRAL SPECIES	53	ENSGT00940000160885	ENSGT00940000154129.m.y #8	ENSGT00940000159006 #9	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00940000155261 #12	ENSGT00940000157981.b	ENSGT00950000183025.b.b #14	ENSGT00940000161087 #15	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.a.b ##27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000161671	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00940000163816 #34	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00940000160763
Long-tailed chinchilla	MODERN SPECIES	165	ENSCLAG00000011497	ENSCLAG00000012230 #8	MAP3K12 (ENSCLAG00000007958) #9	TARBP2 (ENSCLAG00000009175) #10	NPFF (ENSCLAG00000007501) #11	ATF7 (ENSCLAG00000009615) #12	ENSCLAG00000010492	CALCOCO1 (ENSCLAG00000008505) #14	HOXC13 (ENSCLAG00000012400) #15	HOXC12 (ENSCLAG00000012849) #16	HOXC11 (ENSCLAG00000010432) #17	HOXC10 (ENSCLAG00000010877) #18	HOXC9 (ENSCLAG00000008460) #19	HOXC8 (ENSCLAG00000008936) #20	HOXC6 (ENSCLAG00000009220) #21	HOXC5 (ENSCLAG00000007510) #22	HOXC4 (ENSCLAG00000009713) #23	SMUG1 (ENSCLAG00000009996) #25	CBX5 (ENSCLAG00000014138) #26	ENSCLAG00000011502 ##27	NFE2 (ENSCLAG00000008922) #28	COPZ1 (ENSCLAG00000009623) #29	ENSCLAG00000009971 #30	ZNF385A (ENSCLAG00000012440) #31	ITGA5 (ENSCLAG00000012598) #32	GTSF1 (ENSCLAG00000012811) #33	ENSCLAG00000008579 #34	NCKAP1L (ENSCLAG00000012783) #35	PDE1B (ENSCLAG00000012001) #36	PPP1R1A (ENSCLAG00000008320) #37	TESPA1 (ENSCLAG00000010955)
Degu	MODERN SPECIES	134	MAP3K12 (ENSODEG00000013787) #9	TARBP2 (ENSODEG00000013413) #10	ENSODEG00000013431	ATF7 (ENSODEG00000014081) #12	ENSODEG00000013371	CALCOCO1 (ENSODEG00000013989) #14	ENSODEG00000020085	HOXC13 (ENSODEG00000013741) #15	HOXC12 (ENSODEG00000013405) #16	HOXC11 (ENSODEG00000013494) #17	HOXC10 (ENSODEG00000012845) #18	HOXC9 (ENSODEG00000013150) #19	HOXC8 (ENSODEG00000014014) #20	HOXC4 (ENSODEG00000013631) #23	HOXC6 (ENSODEG00000014430) #21	HOXC5 (ENSODEG00000014282) #22	SMUG1 (ENSODEG00000014942) #25	ENSODEG00000013220 #26	ENSODEG00000014815 ##27	NFE2 (ENSODEG00000014004) #28	COPZ1 (ENSODEG00000013855) #29	GPR84 (ENSODEG00000020196)	ZNF385A (ENSODEG00000013971) #31	ITGA5 (ENSODEG00000014190) #32	GTSF1 (ENSODEG00000014220) #33	ENSODEG00000013228 #34	NCKAP1L (ENSODEG00000015445) #35	PDE1B (ENSODEG00000013509) #36	PPP1R1A (ENSODEG00000013950) #37	ENSODEG00000013533	TESPA1 (ENSODEG00000014898)
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000001776 #8	MAP3K12 (ENSHGLG00000001148) #9	ENSHGLG00000045875 #10	ENSHGLG00000034619 #10	ENSHGLG00000048122 #11	ATF7 (ENSHGLG00000001620) #12	ENSHGLG00000043196	CALCOCO1 (ENSHGLG00000001954) #14	HOXC13 (ENSHGLG00000001849) #15	HOXC12 (ENSHGLG00000002214) #16	HOXC11 (ENSHGLG00000002244) #17	HOXC10 (ENSHGLG00000002263) #18	HOXC9 (ENSHGLG00000002316) #19	HOXC8 (ENSHGLG00000050680) #20	ENSHGLG00000046696 #21	HOXC5 (ENSHGLG00000002550) #22	HOXC4 (ENSHGLG00000002699) #23	ENSHGLG00000041830 #25	CBX5 (ENSHGLG00000046659) #26	ENSHGLG00000003139	NFE2 (ENSHGLG00000045831) #28	COPZ1 (ENSHGLG00000004132) #29	GPR84 (ENSHGLG00000037069)	ZNF385A (ENSHGLG00000001612) #31	ITGA5 (ENSHGLG00000002106) #32	ENSHGLG00000002436 #33	ENSHGLG00000002798 #34	NCKAP1L (ENSHGLG00000003165) #35	ENSHGLG00000003015 #36	PPP1R1A (ENSHGLG00000003378) #37	ENSHGLG00000032715
Lagomorpha	ANCESTRAL SPECIES	30	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129 #8	ENSGT00940000159006 #9	ENSGT00940000157748 #10	ENSGT00390000015021 #11	ENSGT00940000155261 #12	ENSGT00940000157981.b	ENSGT00950000183025.b.b #14	ENSGT00940000161307 #16	ENSGT00940000160009 #17	ENSGT00940000160855 #18	ENSGT00940000160866 #19	ENSGT00940000161194 #20	ENSGT00940000159254 #21	ENSGT00940000161023 #22	ENSGT00940000160794 #23	ENSGT00390000004897 #25	ENSGT00940000158801 #26	ENSGT00950000183123.g.a.b.b #27	ENSGT00950000182892.a.a.a #28	ENSGT00390000004405.a.n #29	ENSGT00940000160876 #31	ENSGT00940000158061 #32	ENSGT00940000156784 #33	ENSGT00390000016619.b #35	ENSGT00940000160712 #36	ENSGT00940000161232 #37	ENSGT00940000160763	ENSGT00940000160217	ENSGT01100000263494.a.a.a.a.a.d.b.c
Pika	MODERN SPECIES	753													HOXC13 (ENSOPRG00000006077) #15	HOXC11 (ENSOPRG00000006088) #17	HOXC6 (ENSOPRG00000006093) #21	HOXC5 (ENSOPRG00000006095) #22	HOXC4 (ENSOPRG00000006099) #23	CBX5 (ENSOPRG00000006101) #26	HNRNPA1 (ENSOPRG00000006107) #27	NFE2 (ENSOPRG00000006111) #28