Vertebrata DUPLICATION Vertebrata DUPLICATION Vertebrata DUPLICATION Vertebrata ANCESTRAL SPECIES ENSGT00950000183145.E #22 Gnathostomata ANCESTRAL SPECIES ENSGT00950000183145.E #22 Euteleostomi ANCESTRAL SPECIES 625 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.B.a.a ##22 Sarcopterygii ANCESTRAL SPECIES 13 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000165188 ENSGT00940000157052 #18 ENSGT00390000010398.A ENSGT00940000169682 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Tetrapoda ANCESTRAL SPECIES 17 ENSGT00940000160702 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Amniota ANCESTRAL SPECIES 10 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Mammalia ANCESTRAL SPECIES 14 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000165188 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 ENSGT00940000159002 Theria ANCESTRAL SPECIES 26 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Eutheria ANCESTRAL SPECIES 13 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384 #29 ENSGT00940000164044 #30 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Atlantogenata ANCESTRAL SPECIES 118 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384 #29 ENSGT00940000164044 #30 Xenarthra ANCESTRAL SPECIES 1385 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 Armadillo MODERN SPECIES 2176 PLEKHA1 (ENSDNOG00000043589) #20 HTRA1 (ENSDNOG00000016275) #21 ENSDNOG00000032820 #22 Afrotheria ANCESTRAL SPECIES 197 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384 #29 ENSGT00940000164044 #30 Tenrec MODERN SPECIES 7820 ENSETEG00000001620 #22 Afrotheria_a ANCESTRAL SPECIES 203 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384 #29 ENSGT00940000164044 #30 Elephant MODERN SPECIES 537 ENSLAFG00000003288 #18 BTBD16 (ENSLAFG00000003293) #19 PLEKHA1 (ENSLAFG00000007589) #20 HTRA1 (ENSLAFG00000007595) #21 ENSLAFG00000027577 #22 C10orf120 (ENSLAFG00000018686) #24 ENSLAFG00000001892 #25 CUZD1 (ENSLAFG00000001895) #27 ENSLAFG00000023240 #28 ENSLAFG00000018729 #29 ENSLAFG00000017108 #30 ENSLAFG00000012377 #29 PSTK (ENSLAFG00000029030) IKZF5 (ENSLAFG00000012381) ACADSB (ENSLAFG00000004375) HMX3 (ENSLAFG00000021892) HMX2 (ENSLAFG00000012760) BUB3 (ENSLAFG00000012753) GPR26 (ENSLAFG00000008737) CPXM2 (ENSLAFG00000011034) Boreoeutheria ANCESTRAL SPECIES 16 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 Laurasiatheria ANCESTRAL SPECIES 14 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 Laurasiatheria_a ANCESTRAL SPECIES 15 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00940000163005.a #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 Artiodactyla ANCESTRAL SPECIES 14 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112.c #23 ENSGT00390000012112.d #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000163005.b #28 ENSGT00940000163005.a #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Artiodactyla_a ANCESTRAL SPECIES 14 ENSGT00940000159204 #8 ENSGT00940000166688 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112.c #23 ENSGT00390000012112.d #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000163005.b #28 ENSGT00940000163005.a #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Camelidae ANCESTRAL SPECIES 4 ENSGT00940000159204 #8 ENSGT00940000166688 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112.c #23 ENSGT00390000012112.d #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000163005.b #28 ENSGT00390000017384 #29 ENSGT00940000163005.a #28 Arabian camel MODERN SPECIES 2 INPP5F (ENSCDRG00005015415) #9 MCMBP (ENSCDRG00005015289) #10 SEC23IP (ENSCDRG00005015175) #11 PLPP4 (ENSCDRG00005015079) #12 WDR11 (ENSCDRG00005014918) #13 ENSCDRG00005014853 FGFR2 (ENSCDRG00005014046) #14 ATE1 (ENSCDRG00005013374) #15 ENSCDRG00005013283 #16 NSMCE4A (ENSCDRG00005013236) #17 TACC2 (ENSCDRG00005009143) #18 BTBD16 (ENSCDRG00005008822) #19 PLEKHA1 (ENSCDRG00005008676) #20 ENSCDRG00005008651 HTRA1 (ENSCDRG00005008605) #21 ENSCDRG00005008578 #22 ENSCDRG00005008546 #23 ENSCDRG00005008442 #23 ENSCDRG00005008386 #23 ENSCDRG00005008358 #23 C10orf120 (ENSCDRG00005008312) #24 ENSCDRG00005007985 #23 ENSCDRG00005007808 #25 ENSCDRG00005007759 #28 ENSCDRG00005007717 #28 ENSCDRG00005007572 #29 ENSCDRG00005007518 #29 PSTK (ENSCDRG00005007484) IKZF5 (ENSCDRG00005007437) ACADSB (ENSCDRG00005007354) HMX3 (ENSCDRG00005007324) Artiodactyla_b ANCESTRAL SPECIES 13 ENSGT00940000159204 #8 ENSGT00940000166688 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112.c #23 ENSGT00390000012112.d #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000163005.b #28 ENSGT00940000163005.a #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Pecora ANCESTRAL SPECIES 12 ENSGT00940000155996 #9 ENSGT00940000166688 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00940000169826 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112.c #23 ENSGT00390000012112.d #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000163005.b #28 ENSGT00940000163005.a #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Yarkand deer MODERN SPECIES 6 INPP5F (ENSCHYG00000008007) #9 ENSCHYG00000008228 MCMBP (ENSCHYG00000008251) #10 SEC23IP (ENSCHYG00000008365) #11 PLPP4 (ENSCHYG00000008482) #12 ENSCHYG00000008531 WDR11 (ENSCHYG00000008551) #13 FGFR2 (ENSCHYG00000008730) #14 ATE1 (ENSCHYG00000010156) #15 ENSCHYG00000010624 #16 NSMCE4A (ENSCHYG00000010654) #17 TACC2 (ENSCHYG00000010835) #18 BTBD16 (ENSCHYG00000011865) #19 PLEKHA1 (ENSCHYG00000012229) #20 HTRA1 (ENSCHYG00000012466) #21 ENSCHYG00000012574 #22 ENSCHYG00000012694 #25 C10orf120 (ENSCHYG00000012768) #24 ENSCHYG00000012814 ##22 ENSCHYG00000012970 #28 ENSCHYG00000013013 #29 ENSCHYG00000013157 #29 ENSCHYG00000013211 #28 IKZF5 (ENSCHYG00000013253) ACADSB (ENSCHYG00000013318) HMX3 (ENSCHYG00000013451) HMX2 (ENSCHYG00000013483) BUB3 (ENSCHYG00000013530) GPR26 (ENSCHYG00000013748) CPXM2 (ENSCHYG00000013812) CHST15 (ENSCHYG00000014028) Percora_a ANCESTRAL SPECIES 14 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00940000169826 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112.c #23 ENSGT00390000012112.d.b #23 ENSGT00390000012112.d.a #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Bovidae ANCESTRAL SPECIES 24 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00940000169826 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112.c #23 ENSGT00390000012112.d.b #23 ENSGT00390000012112.d.a #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Caprinae ANCESTRAL SPECIES 19 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068.o #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112.c #23 ENSGT00390000012112.d.b #23 ENSGT00390000012112.d.a #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00390000017384.x #29 ENSGT00940000163005.a #28 ENSGT00390000017384.w #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a Rambouillet Sheep MODERN SPECIES 14 INPP5F (ENSOARG00020014985) #9 MCMBP (ENSOARG00020017074) #10 SEC23IP (ENSOARG00020017426) #11 ENSOARG00020018045 ENSOARG00020018072 PLPP4 (ENSOARG00020018154) #12 WDR11 (ENSOARG00020018347) #13 ENSOARG00020018691 FGFR2 (ENSOARG00020018761) #14 ENSOARG00020019110 ATE1 (ENSOARG00020019169) #15 NSMCE4A (ENSOARG00020019481) #17 BTBD16 (ENSOARG00020021862) #19 PLEKHA1 (ENSOARG00020021950) #20 HTRA1 (ENSOARG00020022118) #21 ENSOARG00020022216 #22 ENSOARG00020022252 ##22 ENSOARG00020022296 #23 ENSOARG00020022322 #23 ENSOARG00020022345 #23 C10orf120 (ENSOARG00020022395) #24 ENSOARG00020022445 #25 ENSOARG00020022472 #25 ENSOARG00020022490 #28 ENSOARG00020022507 ENSOARG00020022531 #29 ENSOARG00020022621 #28 ENSOARG00020022651 #29 PSTK (ENSOARG00020022690) IKZF5 (ENSOARG00020022735) ACADSB (ENSOARG00020022775) Goat MODERN SPECIES 18 TIAL1 (ENSCHIG00000020810) #7 BAG3 (ENSCHIG00000019195) #8 INPP5F (ENSCHIG00000013653) #9 MCMBP (ENSCHIG00000016174) #10 SEC23IP (ENSCHIG00000014446) #11 ENSCHIG00000016797 PLPP4 (ENSCHIG00000013810) #12 ENSCHIG00000003717 #13 FGFR2 (ENSCHIG00000017963) #14 ATE1 (ENSCHIG00000011980) #15 NSMCE4A (ENSCHIG00000015022) #17 TACC2 (ENSCHIG00000013177) #18 BTBD16 (ENSCHIG00000021282) #19 PLEKHA1 (ENSCHIG00000005289) #20 HTRA1 (ENSCHIG00000015305) #21 ENSCHIG00000011076 #22 ENSCHIG00000020915 #23 ENSCHIG00000014539 #23 ENSCHIG00000000456 #23 C10orf120 (ENSCHIG00000016466) #24 ENSCHIG00000010921 #25 ENSCHIG00000023064 #29 ENSCHIG00000021927 #29 PSTK (ENSCHIG00000018657) IKZF5 (ENSCHIG00000025772) ACADSB (ENSCHIG00000024606) HMX3 (ENSCHIG00000010956) HMX2 (ENSCHIG00000026470) BUB3 (ENSCHIG00000021092) GPR26 (ENSCHIG00000011580) CPXM2 (ENSCHIG00000019349) Bovinae ANCESTRAL SPECIES 22 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00960000193053 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00940000169826 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112.c #23 ENSGT00390000012112.d.b #23 ENSGT00390000012112.d.a #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00940000163005.b #28 ENSGT00390000017384.v #29 ENSGT00940000163005.a #28 ENSGT00390000017384.u #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 Bos ANCESTRAL SPECIES 23 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.b.a.b.b ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00940000169826 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112.c #23 ENSGT00390000012112.d.b #23 ENSGT00390000012112.d.a #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00940000163005.b #28 ENSGT00390000017384.v #29 ENSGT00940000163005.a #28 ENSGT00390000017384.u #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000153295.a.e.a.b ENSGT00940000156525 Bos_a ANCESTRAL SPECIES 17 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.b.a.b.b ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112.c #23 ENSGT00390000012112.d.b #23 ENSGT00390000012112.d.a #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000163005.b #28 ENSGT00390000017384.v #29 ENSGT00940000163005.a #28 ENSGT00390000017384.u #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000153295.a.e.a.b ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 Domestic yak MODERN SPECIES 17 TIAL1 (ENSBGRG00000021417) #7 BAG3 (ENSBGRG00000021665) #8 INPP5F (ENSBGRG00000021737) #9 MCMBP (ENSBGRG00000022255) #10 ENSBGRG00000022579 SEC23IP (ENSBGRG00000022602) #11 ENSBGRG00000022938 #12 WDR11 (ENSBGRG00000023025) #13 FGFR2 (ENSBGRG00000023230) #14 ATE1 (ENSBGRG00000023442) #15 NSMCE4A (ENSBGRG00000023734) #17 ENSBGRG00000024000 #18 BTBD16 (ENSBGRG00000024940) #19 PLEKHA1 (ENSBGRG00000024986) #20 HTRA1 (ENSBGRG00000025045) #21 ENSBGRG00000025099 #22 ENSBGRG00000025138 #23 ENSBGRG00000025155 #23 ENSBGRG00000025185 #23 C10orf120 (ENSBGRG00000025213) #24 ENSBGRG00000025242 #25 ENSBGRG00000025332 #28 ENSBGRG00000025341 #29 ENSBGRG00000025366 #28 ENSBGRG00000025376 #29 PSTK (ENSBGRG00000025390) IKZF5 (ENSBGRG00000025418) ACADSB (ENSBGRG00000025451) ENSBGRG00000025478 HMX3 (ENSBGRG00000025490) HMX2 (ENSBGRG00000025503) Wild yak DUPLICATION Wild yak MODERN SPECIES 302 ATE1 (ENSBMUG00000015088) #15 NSMCE4A (ENSBMUG00000014952) #17 TACC2 (ENSBMUG00000014772) #18 BTBD16 (ENSBMUG00000014447) #19 PLEKHA1 (ENSBMUG00000014404) #20 HTRA1 (ENSBMUG00000014370) #21 ENSBMUG00000014336 #22 ENSBMUG00000014303 #22 Wild yak MODERN SPECIES 302 ATE1 (ENSBMUG00000015088) #15 NSMCE4A (ENSBMUG00000014952) #17 TACC2 (ENSBMUG00000014772) #18 BTBD16 (ENSBMUG00000014447) #19 PLEKHA1 (ENSBMUG00000014404) #20 HTRA1 (ENSBMUG00000014370) #21 ENSBMUG00000014336 #22 ENSBMUG00000014303 #22 Bos_b ANCESTRAL SPECIES 23 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.b.a.b.b ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00940000169826 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112.c #23 ENSGT00390000012112.d.b #23 ENSGT00390000012112.d.a #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00940000163005.b #28 ENSGT00390000017384.v #29 ENSGT00940000163005.a #28 ENSGT00390000017384.u #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000153295.a.e.a.b ENSGT00940000156525 Cow DUPLICATION Cow DUPLICATION Cow MODERN SPECIES 18 INPP5F (ENSBTAG00000021801) #9 MCMBP (ENSBTAG00000009877) #10 ENSBTAG00000048455 SEC23IP (ENSBTAG00000007441) #11 PLPP4 (ENSBTAG00000032106) #12 ENSBTAG00000049781 WDR11 (ENSBTAG00000021540) #13 FGFR2 (ENSBTAG00000014064) #14 ATE1 (ENSBTAG00000003178) #15 NSMCE4A (ENSBTAG00000019166) #17 TACC2 (ENSBTAG00000010786) #18 BTBD16 (ENSBTAG00000008819) #19 PLEKHA1 (ENSBTAG00000004636) #20 HTRA1 (ENSBTAG00000008389) #21 ENSBTAG00000050618 #22 ENSBTAG00000052092 #22 ENSBTAG00000053545 #22 ENSBTAG00000038684 #23 SPADH2 (ENSBTAG00000008029) #23 SPADH1 (ENSBTAG00000010796) #23 C26H10orf120 (ENSBTAG00000010797) #24 ENSBTAG00000039755 #25 ENSBTAG00000055162 #25 ENSBTAG00000051599 #25 ENSBTAG00000023846 #29 ENSBTAG00000023845 #29 PSTK (ENSBTAG00000014028) IKZF5 (ENSBTAG00000023847) ACADSB (ENSBTAG00000018041) ENSBTAG00000048256 HMX3 (ENSBTAG00000001006) Cow MODERN SPECIES 18 MCMBP (ENSBTAG00000009877) #10 ENSBTAG00000048455 SEC23IP (ENSBTAG00000007441) #11 PLPP4 (ENSBTAG00000032106) #12 ENSBTAG00000049781 WDR11 (ENSBTAG00000021540) #13 FGFR2 (ENSBTAG00000014064) #14 ATE1 (ENSBTAG00000003178) #15 NSMCE4A (ENSBTAG00000019166) #17 TACC2 (ENSBTAG00000010786) #18 BTBD16 (ENSBTAG00000008819) #19 PLEKHA1 (ENSBTAG00000004636) #20 HTRA1 (ENSBTAG00000008389) #21 ENSBTAG00000050618 #22 ENSBTAG00000052092 #22 ENSBTAG00000053545 #22 ENSBTAG00000038684 #23 SPADH2 (ENSBTAG00000008029) #23 SPADH1 (ENSBTAG00000010796) #23 C26H10orf120 (ENSBTAG00000010797) #24 ENSBTAG00000039755 #25 ENSBTAG00000055162 #25 ENSBTAG00000051599 #25 ENSBTAG00000023846 #29 ENSBTAG00000023845 #29 PSTK (ENSBTAG00000014028) IKZF5 (ENSBTAG00000023847) ACADSB (ENSBTAG00000018041) ENSBTAG00000048256 HMX3 (ENSBTAG00000001006) HMX2 (ENSBTAG00000017911) Cow MODERN SPECIES 18 BAG3 (ENSBTAG00000013641) #8 INPP5F (ENSBTAG00000021801) #9 MCMBP (ENSBTAG00000009877) #10 ENSBTAG00000048455 SEC23IP (ENSBTAG00000007441) #11 PLPP4 (ENSBTAG00000032106) #12 ENSBTAG00000049781 WDR11 (ENSBTAG00000021540) #13 FGFR2 (ENSBTAG00000014064) #14 ATE1 (ENSBTAG00000003178) #15 NSMCE4A (ENSBTAG00000019166) #17 TACC2 (ENSBTAG00000010786) #18 BTBD16 (ENSBTAG00000008819) #19 PLEKHA1 (ENSBTAG00000004636) #20 HTRA1 (ENSBTAG00000008389) #21 ENSBTAG00000050618 #22 ENSBTAG00000052092 #22 ENSBTAG00000053545 #22 ENSBTAG00000038684 #23 SPADH2 (ENSBTAG00000008029) #23 SPADH1 (ENSBTAG00000010796) #23 C26H10orf120 (ENSBTAG00000010797) #24 ENSBTAG00000039755 #25 ENSBTAG00000055162 #25 ENSBTAG00000051599 #25 ENSBTAG00000023846 #29 ENSBTAG00000023845 #29 PSTK (ENSBTAG00000014028) IKZF5 (ENSBTAG00000023847) ACADSB (ENSBTAG00000018041) ENSBTAG00000048256 Hybrid Bos Indicus DUPLICATION Hybrid Bos Indicus DUPLICATION Hybrid Bos Indicus MODERN SPECIES 18 RGS10 (ENSBIXG00005020105) TIAL1 (ENSBIXG00005003333) #7 BAG3 (ENSBIXG00005020191) #8 INPP5F (ENSBIXG00005020287) #9 MCMBP (ENSBIXG00005020337) #10 SEC23IP (ENSBIXG00005003449) #11 PLPP4 (ENSBIXG00005020504) #12 WDR11 (ENSBIXG00005003481) #13 FGFR2 (ENSBIXG00005003546) #14 ATE1 (ENSBIXG00005021194) #15 NSMCE4A (ENSBIXG00005021235) #17 TACC2 (ENSBIXG00005003615) #18 BTBD16 (ENSBIXG00005003629) #19 PLEKHA1 (ENSBIXG00005021579) #20 HTRA1 (ENSBIXG00005021640) #21 ENSBIXG00005021652 #22 ENSBIXG00005021747 #22 ENSBIXG00005021776 #22 ENSBIXG00005021850 #23 ENSBIXG00005021867 #23 ENSBIXG00005021940 #23 C10orf120 (ENSBIXG00005021964) #24 ENSBIXG00005007366 #25 ENSBIXG00005003736 #28 ENSBIXG00005022065 #29 ENSBIXG00005022073 #28 ENSBIXG00005022094 #29 PSTK (ENSBIXG00005007367) IKZF5 (ENSBIXG00005022167) ACADSB (ENSBIXG00005003788) HMX3 (ENSBIXG00005022277) Hybrid Bos Indicus MODERN SPECIES 18 BAG3 (ENSBIXG00005020191) #8 INPP5F (ENSBIXG00005020287) #9 MCMBP (ENSBIXG00005020337) #10 SEC23IP (ENSBIXG00005003449) #11 PLPP4 (ENSBIXG00005020504) #12 WDR11 (ENSBIXG00005003481) #13 FGFR2 (ENSBIXG00005003546) #14 ATE1 (ENSBIXG00005021194) #15 NSMCE4A (ENSBIXG00005021235) #17 TACC2 (ENSBIXG00005003615) #18 BTBD16 (ENSBIXG00005003629) #19 PLEKHA1 (ENSBIXG00005021579) #20 HTRA1 (ENSBIXG00005021640) #21 ENSBIXG00005021652 #22 ENSBIXG00005021747 #22 ENSBIXG00005021776 #22 ENSBIXG00005021850 #23 ENSBIXG00005021867 #23 ENSBIXG00005021940 #23 C10orf120 (ENSBIXG00005021964) #24 ENSBIXG00005007366 #25 ENSBIXG00005003736 #28 ENSBIXG00005022065 #29 ENSBIXG00005022073 #28 ENSBIXG00005022094 #29 PSTK (ENSBIXG00005007367) IKZF5 (ENSBIXG00005022167) ACADSB (ENSBIXG00005003788) HMX3 (ENSBIXG00005022277) HMX2 (ENSBIXG00005003794) BUB3 (ENSBIXG00005022455) Hybrid Bos Indicus MODERN SPECIES 18 TIAL1 (ENSBIXG00005003333) #7 BAG3 (ENSBIXG00005020191) #8 INPP5F (ENSBIXG00005020287) #9 MCMBP (ENSBIXG00005020337) #10 SEC23IP (ENSBIXG00005003449) #11 PLPP4 (ENSBIXG00005020504) #12 WDR11 (ENSBIXG00005003481) #13 FGFR2 (ENSBIXG00005003546) #14 ATE1 (ENSBIXG00005021194) #15 NSMCE4A (ENSBIXG00005021235) #17 TACC2 (ENSBIXG00005003615) #18 BTBD16 (ENSBIXG00005003629) #19 PLEKHA1 (ENSBIXG00005021579) #20 HTRA1 (ENSBIXG00005021640) #21 ENSBIXG00005021652 #22 ENSBIXG00005021747 #22 ENSBIXG00005021776 #22 ENSBIXG00005021850 #23 ENSBIXG00005021867 #23 ENSBIXG00005021940 #23 C10orf120 (ENSBIXG00005021964) #24 ENSBIXG00005007366 #25 ENSBIXG00005003736 #28 ENSBIXG00005022065 #29 ENSBIXG00005022073 #28 ENSBIXG00005022094 #29 PSTK (ENSBIXG00005007367) IKZF5 (ENSBIXG00005022167) ACADSB (ENSBIXG00005003788) HMX3 (ENSBIXG00005022277) HMX2 (ENSBIXG00005003794) Cetacea ANCESTRAL SPECIES 15 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000166688.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00940000154277.a.b.b.m.a.b ENSGT00630000089895 ENSGT00940000162535 ENSGT00940000159002 ENSGT00530000063371.B Blue whale MODERN SPECIES 7 ENSBMSG00010012993 INPP5F (ENSBMSG00010012966) #9 ENSBMSG00010012916 MCMBP (ENSBMSG00010012893) #10 SEC23IP (ENSBMSG00010012870) #11 PLPP4 (ENSBMSG00010012851) #12 WDR11 (ENSBMSG00010012814) #13 FGFR2 (ENSBMSG00010012623) #14 ATE1 (ENSBMSG00010017265) #15 NSMCE4A (ENSBMSG00010017199) #17 ENSBMSG00010015526 #18 BTBD16 (ENSBMSG00010015231) #19 PLEKHA1 (ENSBMSG00010015154) #20 HTRA1 (ENSBMSG00010015062) #21 C10orf120 (ENSBMSG00010015033) #24 ENSBMSG00010014864 #22 ENSBMSG00010014827 ENSBMSG00010014809 #28 ENSBMSG00010014794 #29 ENSBMSG00010014768 #28 ENSBMSG00010014749 #29 PSTK (ENSBMSG00010014723) IKZF5 (ENSBMSG00010014703) ENSBMSG00010014664 HMX3 (ENSBMSG00010014645) HMX2 (ENSBMSG00010014617) BUB3 (ENSBMSG00010014520) ENSBMSG00010014482 GPR26 (ENSBMSG00010014443) CPXM2 (ENSBMSG00010014404) CHST15 (ENSBMSG00010014379) Odontoceti ANCESTRAL SPECIES 14 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00940000166688.a ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00390000005104.j.b ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00390000006865.j.b ENSGT00940000154277.a.b.b.m.a.b ENSGT00630000089895 ENSGT00940000162535 Sperm whale MODERN SPECIES 12 ENSPCTG00005021949 INPP5F (ENSPCTG00005021967) #9 ENSPCTG00005022003 MCMBP (ENSPCTG00005022006) #10 SEC23IP (ENSPCTG00005022014) #11 ENSPCTG00005022029 ENSPCTG00005022034 PLPP4 (ENSPCTG00005022038) #12 ENSPCTG00005022049 WDR11 (ENSPCTG00005022064) #13 FGFR2 (ENSPCTG00005022152) #14 ATE1 (ENSPCTG00005022336) #15 ENSPCTG00005022356 #17 PLEKHA1 (ENSPCTG00005022364) #20 ENSPCTG00005022367 #21 ENSPCTG00005022368 #22 C10orf120 (ENSPCTG00005022369) #24 ENSPCTG00005022370 #29 ENSPCTG00005004457 #29 PSTK (ENSPCTG00005004477) IKZF5 (ENSPCTG00005004486) ACADSB (ENSPCTG00005004501) HMX3 (ENSPCTG00005004538) HMX2 (ENSPCTG00005004556) BUB3 (ENSPCTG00005004599) ENSPCTG00005004662 GPR26 (ENSPCTG00005004687) CPXM2 (ENSPCTG00005004720) CHST15 (ENSPCTG00005004768) ENSPCTG00005004794 FAM53B (ENSPCTG00005004807) Odontoceti_a ANCESTRAL SPECIES 11 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00940000166688.a ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000163005.b #28 ENSGT00390000017384.fb.b #29 ENSGT00940000163005.a #28 ENSGT00390000017384.fb.a #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00390000005104.j.b ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Dolphin MODERN SPECIES 583 BTBD16 (ENSTTRG00000005150) #19 PLEKHA1 (ENSTTRG00000005204) #20 HTRA1 (ENSTTRG00000005241) #21 ENSTTRG00000005254 #22 Odontoceti_b ANCESTRAL SPECIES 14 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00940000166688.a ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000163005.b #28 ENSGT00390000017384.fb.b #29 ENSGT00940000163005.a #28 ENSGT00390000017384.fb.a #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00390000005104.j.b ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Vaquita DUPLICATION Vaquita MODERN SPECIES 7 BAG3 (ENSPSNG00000022114) #8 INPP5F (ENSPSNG00000022147) #9 ENSPSNG00000022181 MCMBP (ENSPSNG00000022194) #10 SEC23IP (ENSPSNG00000022208) #11 PLPP4 (ENSPSNG00000022236) #12 WDR11 (ENSPSNG00000022247) #13 FGFR2 (ENSPSNG00000022313) #14 ATE1 (ENSPSNG00000022367) #15 NSMCE4A (ENSPSNG00000022375) #17 ENSPSNG00000022404 #18 ENSPSNG00000022440 #18 BTBD16 (ENSPSNG00000022446) #19 PLEKHA1 (ENSPSNG00000022463) #20 HTRA1 (ENSPSNG00000022472) #21 ENSPSNG00000022481 #22 ENSPSNG00000022486 #22 C10orf120 (ENSPSNG00000022490) #24 ENSPSNG00000022493 #28 ENSPSNG00000022495 #29 ENSPSNG00000022497 #28 ENSPSNG00000022499 #29 PSTK (ENSPSNG00000022505) IKZF5 (ENSPSNG00000022509) ACADSB (ENSPSNG00000022512) HMX3 (ENSPSNG00000022517) BUB3 (ENSPSNG00000022526) ENSPSNG00000004804 GPR26 (ENSPSNG00000004875) CPXM2 (ENSPSNG00000004901) CHST15 (ENSPSNG00000004925) Vaquita MODERN SPECIES 7 INPP5F (ENSPSNG00000022147) #9 ENSPSNG00000022181 MCMBP (ENSPSNG00000022194) #10 SEC23IP (ENSPSNG00000022208) #11 PLPP4 (ENSPSNG00000022236) #12 WDR11 (ENSPSNG00000022247) #13 FGFR2 (ENSPSNG00000022313) #14 ATE1 (ENSPSNG00000022367) #15 NSMCE4A (ENSPSNG00000022375) #17 ENSPSNG00000022404 #18 ENSPSNG00000022440 #18 BTBD16 (ENSPSNG00000022446) #19 PLEKHA1 (ENSPSNG00000022463) #20 HTRA1 (ENSPSNG00000022472) #21 ENSPSNG00000022481 #22 ENSPSNG00000022486 #22 C10orf120 (ENSPSNG00000022490) #24 ENSPSNG00000022493 #28 ENSPSNG00000022495 #29 ENSPSNG00000022497 #28 ENSPSNG00000022499 #29 PSTK (ENSPSNG00000022505) IKZF5 (ENSPSNG00000022509) ACADSB (ENSPSNG00000022512) HMX3 (ENSPSNG00000022517) BUB3 (ENSPSNG00000022526) ENSPSNG00000004804 GPR26 (ENSPSNG00000004875) CPXM2 (ENSPSNG00000004901) CHST15 (ENSPSNG00000004925) ENSPSNG00000004944 Monodontidae ANCESTRAL SPECIES 14 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000166688.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00390000017384.gb #29 ENSGT00390000017384.fb.a #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00390000005104.j.b ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00390000006865.j.b ENSGT00940000154277.a.b.b.m.a.b Narwhal MODERN SPECIES 311 BAG3 (ENSMMNG00015020314) #8 INPP5F (ENSMMNG00015020349) #9 ENSMMNG00015020417 MCMBP (ENSMMNG00015020433) #10 ENSMMNG00015020452 SEC23IP (ENSMMNG00015020467) #11 PLPP4 (ENSMMNG00015020521) #12 WDR11 (ENSMMNG00015020551) #13 FGFR2 (ENSMMNG00015020685) #14 ATE1 (ENSMMNG00015020901) #15 NSMCE4A (ENSMMNG00015020951) #17 ENSMMNG00015021035 #18 BTBD16 (ENSMMNG00015021175) #19 PLEKHA1 (ENSMMNG00015021236) #20 HTRA1 (ENSMMNG00015021277) #21 ENSMMNG00015021290 #22 C10orf120 (ENSMMNG00015021309) #24 ENSMMNG00015021326 #28 ENSMMNG00015021338 #28 PSTK (ENSMMNG00015021353) IKZF5 (ENSMMNG00015021364) ACADSB (ENSMMNG00015021378) HMX3 (ENSMMNG00015021392) HMX2 (ENSMMNG00015021402) BUB3 (ENSMMNG00015021424) ENSMMNG00015021458 GPR26 (ENSMMNG00015021467) CPXM2 (ENSMMNG00015021491) CHST15 (ENSMMNG00015021516) ENSMMNG00015021529 ENSMMNG00015021538 Suina ANCESTRAL SPECIES 6 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112.c.f #23 ENSGT00390000012112.d #23 ENSGT00390000012112.c.e.a #23 ENSGT00390000012112.c.e.b #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000163005.b #28 ENSGT00940000163005.a #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a Pig MODERN SPECIES 5 INPP5F (ENSSSCG00000010687) #9 MCMBP (ENSSSCG00000010688) #10 ENSSSCG00000056743 SEC23IP (ENSSSCG00000010690) #11 PLPP4 (ENSSSCG00000010691) #12 WDR11 (ENSSSCG00000010692) #13 ENSSSCG00000041462 FGFR2 (ENSSSCG00000010698) #14 ATE1 (ENSSSCG00000010699) #15 ENSSSCG00000057767 NSMCE4A (ENSSSCG00000010700) #17 TACC2 (ENSSSCG00000037530) #18 BTBD16 (ENSSSCG00000010701) #19 PLEKHA1 (ENSSSCG00000010702) #20 HTRA1 (ENSSSCG00000010703) #21 ENSSSCG00000055799 #22 ENSSSCG00000049231 AWN (ENSSSCG00000002980) #23 ENSSSCG00000021947 #23 PSP-II (ENSSSCG00000061335) #23 PSP-I (ENSSSCG00000002978) #23 SPMI (ENSSSCG00000002977) #23 C14H10orf120 (ENSSSCG00000010717) #24 ENSSSCG00000010718 #25 ENSSSCG00000049267 #25 ENSSSCG00000051569 #28 ENSSSCG00000010719 #29 ENSSSCG00000058782 #28 ENSSSCG00000023865 #29 PSTK (ENSSSCG00000010721) IKZF5 (ENSSSCG00000023565) Chacoan peccary MODERN SPECIES 955 PLPP4 (ENSCWAG00000018014) #12 ENSCWAG00000017992 WDR11 (ENSCWAG00000017961) #13 FGFR2 (ENSCWAG00000013844) #14 ATE1 (ENSCWAG00000013413) #15 NSMCE4A (ENSCWAG00000013284) #17 ENSCWAG00000011139 #18 BTBD16 (ENSCWAG00000010937) #19 PLEKHA1 (ENSCWAG00000010671) #20 HTRA1 (ENSCWAG00000010613) #21 ENSCWAG00000010416 #23 ENSCWAG00000010366 #23 ENSCWAG00000010277 #23 ENSCWAG00000009916 #23 C10orf120 (ENSCWAG00000009823) #24 ENSCWAG00000009129 #22 ENSCWAG00000009087 #28 C10orf88 (ENSCWAG00000018230) #29 PSTK (ENSCWAG00000018180) IKZF5 (ENSCWAG00000018145) ACADSB (ENSCWAG00000018050) HMX3 (ENSCWAG00000018030) HMX2 (ENSCWAG00000018003) BUB3 (ENSCWAG00000017831) CPXM2 (ENSCWAG00000017772) CHST15 (ENSCWAG00000017720) OAT (ENSCWAG00000017679) NKX1-2 (ENSCWAG00000017640) LHPP (ENSCWAG00000017585) FAM53B (ENSCWAG00000017561) ENSCWAG00000017539 Laurasiatheria_b ANCESTRAL SPECIES 15 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00390000005511 #24 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00940000162108.tb #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00390000017384 #29 ENSGT00940000163005.a #28 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Laurasiatheria_c ANCESTRAL SPECIES 15 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00390000017384 #29 ENSGT00940000163005.a #28 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Chiroptera ANCESTRAL SPECIES 6 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447.r #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00390000017384 #29 ENSGT00940000163005.a #28 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Microchiroptera ANCESTRAL SPECIES 5 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447.r #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Microbat MODERN SPECIES 2138 ENSMLUG00000023051 #22 ENSMLUG00000028238 Greater horseshoe bat MODERN SPECIES 7 TIAL1 (ENSRFEG00010012554) #7 BAG3 (ENSRFEG00010012499) #8 INPP5F (ENSRFEG00010012275) #9 MCMBP (ENSRFEG00010012192) #10 SEC23IP (ENSRFEG00010012086) #11 PLPP4 (ENSRFEG00010011968) #12 WDR11 (ENSRFEG00010011888) #13 FGFR2 (ENSRFEG00010011408) #14 ATE1 (ENSRFEG00010011030) #15 ENSRFEG00010010986 #16 NSMCE4A (ENSRFEG00010010935) #17 TACC2 (ENSRFEG00010010381) #18 BTBD16 (ENSRFEG00010010148) #19 PLEKHA1 (ENSRFEG00010010055) #20 HTRA1 (ENSRFEG00010010004) #21 ENSRFEG00010009865 #22 C10orf120 (ENSRFEG00010009794) #24 ENSRFEG00010009653 #25 CUZD1 (ENSRFEG00010009612) #27 ENSRFEG00010009592 #29 ENSRFEG00010009483 #29 PSTK (ENSRFEG00010009389) IKZF5 (ENSRFEG00010009357) ENSRFEG00010009328 HMX3 (ENSRFEG00010009301) HMX2 (ENSRFEG00010009282) BUB3 (ENSRFEG00010009105) GPR26 (ENSRFEG00010009057) CPXM2 (ENSRFEG00010009013) CHST15 (ENSRFEG00010008970) ENSRFEG00010008862 Megabat MODERN SPECIES 2926 ENSPVAG00000015546 #22 Equus ANCESTRAL SPECIES 9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00390000012112.e #23 ENSGT00390000012112.f #23 ENSGT00390000005511 #24 ENSGT00950000183145.E #22 ENSGT00940000162108.tb #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b.a #28 ENSGT00940000163005.b.b #28 ENSGT00390000017384.kb #29 ENSGT00940000163005.a #28 ENSGT00390000017384.jb #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Donkey DUPLICATION Donkey MODERN SPECIES 11 HMX2 (ENSEASG00005033822) HMX3 (ENSEASG00005013491) ACADSB (ENSEASG00005013489) IKZF5 (ENSEASG00005024598) PSTK (ENSEASG00005013485) ENSEASG00005013480 #29 ENSEASG00005013481 #28 ENSEASG00005032712 #29 ENSEASG00005028447 #28 CUZD1 (ENSEASG00005013476) #27 ENSEASG00005032296 #26 ENSEASG00005013472 #25 ENSEASG00005037253 #22 C10orf120 (ENSEASG00005033462) #24 ENSEASG00005024831 #23 ENSEASG00005035091 #22 ENSEASG00005034128 #23 ENSEASG00005014371 ENSEASG00005014375 #21 PLEKHA1 (ENSEASG00005014376) #20 BTBD16 (ENSEASG00005037072) #19 TACC2 (ENSEASG00005014393) #18 NSMCE4A (ENSEASG00005014412) #17 ENSEASG00005014414 #16 ATE1 (ENSEASG00005014421) #15 FGFR2 (ENSEASG00005014428) #14 WDR11 (ENSEASG00005014435) #13 PLPP4 (ENSEASG00005014441) #12 SEC23IP (ENSEASG00005014443) #11 MCMBP (ENSEASG00005014444) #10 ENSEASG00005038260 Donkey DUPLICATION Donkey MODERN SPECIES 11 PLPP4 (ENSEASG00005014441) #12 WDR11 (ENSEASG00005014435) #13 FGFR2 (ENSEASG00005014428) #14 ATE1 (ENSEASG00005014421) #15 ENSEASG00005014414 #16 NSMCE4A (ENSEASG00005014412) #17 TACC2 (ENSEASG00005014393) #18 BTBD16 (ENSEASG00005037072) #19 PLEKHA1 (ENSEASG00005014376) #20 ENSEASG00005014375 #21 ENSEASG00005014371 ENSEASG00005034128 #23 ENSEASG00005035091 #22 ENSEASG00005024831 #23 C10orf120 (ENSEASG00005033462) #24 ENSEASG00005037253 #22 ENSEASG00005013472 #25 ENSEASG00005032296 #26 CUZD1 (ENSEASG00005013476) #27 ENSEASG00005028447 #28 ENSEASG00005032712 #29 ENSEASG00005013481 #28 ENSEASG00005013480 #29 PSTK (ENSEASG00005013485) IKZF5 (ENSEASG00005024598) ACADSB (ENSEASG00005013489) HMX3 (ENSEASG00005013491) HMX2 (ENSEASG00005033822) BUB3 (ENSEASG00005013498) GPR26 (ENSEASG00005013501) CPXM2 (ENSEASG00005013580) Donkey MODERN SPECIES 11 ENSEASG00005000061 PRKD1 (ENSEASG00005000023) ENSEASG00005018653 ENSEASG00005018652 ENSEASG00005018651 ENSEASG00005030567 ENSEASG00005025548 ENSEASG00005018648 ENSEASG00005030376 ENSEASG00005026647 ENSEASG00005018535 ENSEASG00005026776 ENSEASG00005013845 ENSEASG00005015114 ENSEASG00005018539 ENSEASG00005014373 #22 ENSEASG00005036308 ENSEASG00005034020 ENSEASG00005010386 ENSEASG00005018531 ENSEASG00005022749 ENSEASG00005018553 ENSEASG00005013861 ENSEASG00005007501 ENSEASG00005011734 ENSEASG00005012336 ENSEASG00005026663 ENSEASG00005025627 ENSEASG00005015220 ENSEASG00005012328 ENSEASG00005012295 Horse DUPLICATION Horse DUPLICATION Horse MODERN SPECIES 398 ENSECAG00000028484 #22 Horse MODERN SPECIES 385 ENSECAG00000028966 #22 Horse MODERN SPECIES SEC23IP (ENSECAG00000000536) #11 PLPP4 (ENSECAG00000023526) #12 WDR11 (ENSECAG00000019673) #13 FGFR2 (ENSECAG00000013960) #14 ATE1 (ENSECAG00000012383) #15 NSMCE4A (ENSECAG00000016651) #17 BTBD16 (ENSECAG00000008814) #19 TACC2 (ENSECAG00000018280) #18 PLEKHA1 (ENSECAG00000014908) #20 HTRA1 (ENSECAG00000009990) #21 ENSECAG00000009596 #23 ENSECAG00000060192 ##22 ENSECAG00000006313 #23 ENSECAG00000046082 C1H10orf120 (ENSECAG00000002143) #24 ENSECAG00000009186 #22 ENSECAG00000019510 #25 ENSECAG00000014886 #28 CUZD1 (ENSECAG00000014944) #27 ENSECAG00000013380 #29 ENSECAG00000040992 #28 ENSECAG00000012505 #29 PSTK (ENSECAG00000011238) IKZF5 (ENSECAG00000006987) ENSECAG00000017638 HMX3 (ENSECAG00000037274) HMX2 (ENSECAG00000012690) BUB3 (ENSECAG00000010047) GPR26 (ENSECAG00000008245) CPXM2 (ENSECAG00000024631) CHST15 (ENSECAG00000022078) Carnivora ANCESTRAL SPECIES 16 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.b #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00390000017384.hb #29 ENSGT00940000163005.a #28 ENSGT00390000017384.ib #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a Caniformia ANCESTRAL SPECIES 13 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.b #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00390000017384.hb #29 ENSGT00940000163005.a #28 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Caniformia_b ANCESTRAL SPECIES 10 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00390000017384.hb #29 ENSGT00940000163005.a #28 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Ursidae ANCESTRAL SPECIES 5 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000166528.a.a ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955.d #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00390000017384.hb #29 ENSGT00940000163005.a #28 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Giant Panda MODERN SPECIES 16 BAG3 (ENSAMEG00000010175) #8 INPP5F (ENSAMEG00000010186) #9 MCMBP (ENSAMEG00000010208) #10 ENSAMEG00000001122 SEC23IP (ENSAMEG00000010251) #11 PLPP4 (ENSAMEG00000010299) #12 WDR11 (ENSAMEG00000010302) #13 FGFR2 (ENSAMEG00000010959) #14 ATE1 (ENSAMEG00000010918) #15 ENSAMEG00000010913 #16 NSMCE4A (ENSAMEG00000010897) #17 TACC2 (ENSAMEG00000010858) #18 BTBD16 (ENSAMEG00000010849) #19 PLEKHA1 (ENSAMEG00000024104) #20 HTRA1 (ENSAMEG00000024939) #21 ENSAMEG00000008992 #22 ENSAMEG00000004692 #24 ENSAMEG00000004685 #29 ENSAMEG00000030562 #28 ENSAMEG00000004671 ENSAMEG00000004665 ACADSB (ENSAMEG00000004639) HMX3 (ENSAMEG00000024653) HMX2 (ENSAMEG00000009520) BUB3 (ENSAMEG00000009521) GPR26 (ENSAMEG00000009542) CPXM2 (ENSAMEG00000009550) CHST15 (ENSAMEG00000010183) OAT (ENSAMEG00000010160) LHPP (ENSAMEG00000010149) FAM53B (ENSAMEG00000004200) Ursus ANCESTRAL SPECIES 7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000166528.a.a ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955.d #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000154525.b.a #27 ENSGT00390000017384.hb.b #29 ENSGT00390000017384.hb.a #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 American black bear MODERN SPECIES 812 ENSUAMG00000018234 #18 ENSUAMG00000018235 #18 BTBD16 (ENSUAMG00000018236) #19 PLEKHA1 (ENSUAMG00000018237) #20 HTRA1 (ENSUAMG00000018238) #21 ENSUAMG00000018239 #22 Polar bear DUPLICATION Polar bear MODERN SPECIES 92 ENSUMAG00000003871 SEC23IP (ENSUMAG00000003896) #11 PLPP4 (ENSUMAG00000004036) #12 ENSUMAG00000004063 WDR11 (ENSUMAG00000004075) #13 ENSUMAG00000004111 #14 ENSUMAG00000004366 #14 ATE1 (ENSUMAG00000004457) #15 ENSUMAG00000004468 #16 NSMCE4A (ENSUMAG00000004478) #17 TACC2 (ENSUMAG00000004546) #18 BTBD16 (ENSUMAG00000004944) #19 PLEKHA1 (ENSUMAG00000004973) #20 HTRA1 (ENSUMAG00000004978) #21 ENSUMAG00000004981 #22 ENSUMAG00000004990 #22 C10orf120 (ENSUMAG00000005005) #24 ENSUMAG00000005031 #25 ENSUMAG00000005147 CUZD1 (ENSUMAG00000005153) #27 ENSUMAG00000005171 #29 ENSUMAG00000005180 #29 PSTK (ENSUMAG00000005193) IKZF5 (ENSUMAG00000005198) ACADSB (ENSUMAG00000005207) BUB3 (ENSUMAG00000005215) CPXM2 (ENSUMAG00000005241) CHST15 (ENSUMAG00000005326) OAT (ENSUMAG00000005337) LHPP (ENSUMAG00000005342) FAM53B (ENSUMAG00000005371) Polar bear MODERN SPECIES 92 MCMBP (ENSUMAG00000003425) #10 ENSUMAG00000003871 SEC23IP (ENSUMAG00000003896) #11 PLPP4 (ENSUMAG00000004036) #12 ENSUMAG00000004063 WDR11 (ENSUMAG00000004075) #13 ENSUMAG00000004111 #14 ENSUMAG00000004366 #14 ATE1 (ENSUMAG00000004457) #15 ENSUMAG00000004468 #16 NSMCE4A (ENSUMAG00000004478) #17 TACC2 (ENSUMAG00000004546) #18 BTBD16 (ENSUMAG00000004944) #19 PLEKHA1 (ENSUMAG00000004973) #20 HTRA1 (ENSUMAG00000004978) #21 ENSUMAG00000004981 #22 ENSUMAG00000004990 #22 C10orf120 (ENSUMAG00000005005) #24 ENSUMAG00000005031 #25 ENSUMAG00000005147 CUZD1 (ENSUMAG00000005153) #27 ENSUMAG00000005171 #29 ENSUMAG00000005180 #29 PSTK (ENSUMAG00000005193) IKZF5 (ENSUMAG00000005198) ACADSB (ENSUMAG00000005207) BUB3 (ENSUMAG00000005215) CPXM2 (ENSUMAG00000005241) CHST15 (ENSUMAG00000005326) OAT (ENSUMAG00000005337) LHPP (ENSUMAG00000005342) Mustelinae ANCESTRAL SPECIES 40 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00390000017384.hb #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Ferret MODERN SPECIES 193 MCMBP (ENSMPUG00000003036) #10 SEC23IP (ENSMPUG00000003023) #11 PLPP4 (ENSMPUG00000003005) #12 WDR11 (ENSMPUG00000002997) #13 ENSMPUG00000002994 FGFR2 (ENSMPUG00000002989) #14 ENSMPUG00000002985 ENSMPUG00000002979 ATE1 (ENSMPUG00000002968) #15 NSMCE4A (ENSMPUG00000002960) #17 ENSMPUG00000002953 #18 ENSMPUG00000002944 #18 BTBD16 (ENSMPUG00000002903) #19 PLEKHA1 (ENSMPUG00000002899) #20 HTRA1 (ENSMPUG00000002895) #21 ENSMPUG00000002892 #22 ENSMPUG00000002887 C10orf120 (ENSMPUG00000002881) #24 ENSMPUG00000002877 ENSMPUG00000002820 #25 CUZD1 (ENSMPUG00000002814) #27 ENSMPUG00000019258 ENSMPUG00000002809 #29 ENSMPUG00000002801 #29 PSTK (ENSMPUG00000002790) IKZF5 (ENSMPUG00000002786) ACADSB (ENSMPUG00000002783) HMX3 (ENSMPUG00000002780) HMX2 (ENSMPUG00000002778) BUB3 (ENSMPUG00000002774) ENSMPUG00000002770 American mink MODERN SPECIES 35 TIAL1 (ENSNVIG00000005133) #7 BAG3 (ENSNVIG00000005182) #8 INPP5F (ENSNVIG00000005245) #9 MCMBP (ENSNVIG00000005366) #10 SEC23IP (ENSNVIG00000005465) #11 PLPP4 (ENSNVIG00000005960) #12 ENSNVIG00000005981 WDR11 (ENSNVIG00000006011) #13 FGFR2 (ENSNVIG00000006193) #14 ATE1 (ENSNVIG00000006880) #15 NSMCE4A (ENSNVIG00000006954) #17 TACC2 (ENSNVIG00000006963) #18 BTBD16 (ENSNVIG00000007104) #19 PLEKHA1 (ENSNVIG00000007135) #20 HTRA1 (ENSNVIG00000007206) #21 ENSNVIG00000007221 #22 C10orf120 (ENSNVIG00000007718) #24 CUZD1 (ENSNVIG00000007746) #27 ENSNVIG00000007783 #29 PSTK (ENSNVIG00000007798) IKZF5 (ENSNVIG00000007802) ACADSB (ENSNVIG00000007815) HMX3 (ENSNVIG00000007846) HMX2 (ENSNVIG00000007861) BUB3 (ENSNVIG00000007873) GPR26 (ENSNVIG00000007954) CPXM2 (ENSNVIG00000007971) CHSTF (ENSNVIG00000008037) OAT (ENSNVIG00000008116) NKX1-2 (ENSNVIG00000008189) LHPP (ENSNVIG00000008217) Canidae ANCESTRAL SPECIES 16 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000163657 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.b #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00390000017384.hb.f #29 ENSGT00390000017384.hb.e #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Canis_lupus DUPLICATION Canis_lupus DUPLICATION Canis_lupus ANCESTRAL SPECIES 20 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00390000004380.e.a.a ENSGT00940000163657.f ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E.kb.b #22 ENSGT00950000183145.E.kb.a #22 ENSGT00950000183145.B.a.b ##22 ENSGT00950000183145.E.lb #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.b #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00390000017384.hb.f #29 ENSGT00390000017384.hb.e #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a Dog MODERN SPECIES 20 MCMBP (ENSCAFG00845017945) #10 SEC23IP (ENSCAFG00845018243) #11 ENSCAFG00845018569 ENSCAFG00845018618 PLPP4 (ENSCAFG00845018703) #12 WDR11 (ENSCAFG00845018912) #13 FGFR2 (ENSCAFG00845019372) #14 ATE1 (ENSCAFG00845020272) #15 ATE1OS (ENSCAFG00845020507) #16 NSMCE4A (ENSCAFG00845020544) #17 TACC2 (ENSCAFG00845020783) #18 BTBD16 (ENSCAFG00845021873) #19 PLEKHA1 (ENSCAFG00845022104) #20 HTRA1 (ENSCAFG00845022222) #21 ENSCAFG00845022418 #22 ENSCAFG00845023612 #22 ENSCAFG00845023643 ##22 C10orf120 (ENSCAFG00845023695) #24 ENSCAFG00845023783 #25 CUZD1 (ENSCAFG00845024055) #27 ENSCAFG00845024126 #28 ENSCAFG00845024159 #29 ENSCAFG00845024221 #29 PSTK (ENSCAFG00845024287) IKZF5 (ENSCAFG00845024334) ACADSB (ENSCAFG00845024388) HMX3 (ENSCAFG00845024473) HMX2 (ENSCAFG00845024515) PSTK (ENSCAFG00845024586) GPR26 (ENSCAFG00845024706) CHST15 (ENSCAFG00845024829) Dingo MODERN SPECIES 165 SEC23IP (ENSCAFG00020014659) #11 ENSCAFG00020014663 ENSCAFG00020014666 PLPP4 (ENSCAFG00020014668) #12 WDR11 (ENSCAFG00020014683) #13 FGFR2 (ENSCAFG00020014779) #14 ATE1 (ENSCAFG00020014791) #15 ENSCAFG00020014813 #16 ENSCAFG00020014819 #17 TACC2 (ENSCAFG00020014827) #18 BTBD16 (ENSCAFG00020015057) #19 PLEKHA1 (ENSCAFG00020015085) #20 HTRA1 (ENSCAFG00020015096) #21 ENSCAFG00020015148 #22 ENSCAFG00020015160 #22 ENSCAFG00020015167 #22 ENSCAFG00020015171 #22 C10orf120 (ENSCAFG00020015180) #24 ENSCAFG00020015184 #25 ENSCAFG00020015187 #25 ENSCAFG00020015189 #25 CUZD1 (ENSCAFG00020015193) #27 ENSCAFG00020015197 #29 ENSCAFG00020015204 #29 PSTK (ENSCAFG00020015208) IKZF5 (ENSCAFG00020015212) ACADSB (ENSCAFG00020015216) HMX3 (ENSCAFG00020015221) HMX2 (ENSCAFG00020015225) BUB3 (ENSCAFG00020015234) GPR26 (ENSCAFG00020015240) Canis_lupus ANCESTRAL SPECIES 20 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00390000004380.e.a.a ENSGT00940000163657.f ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E.kb.b #22 ENSGT00950000183145.E.kb.a #22 ENSGT00950000183145.B.a.b ##22 ENSGT00950000183145.E.lb #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.b #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00390000017384.hb.f #29 ENSGT00390000017384.hb.e #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 Dog MODERN SPECIES 20 SEC23IP (ENSCAFG00845017286) #9 MCMBP (ENSCAFG00845017945) #10 SEC23IP (ENSCAFG00845018243) #11 ENSCAFG00845018569 ENSCAFG00845018618 PLPP4 (ENSCAFG00845018703) #12 WDR11 (ENSCAFG00845018912) #13 FGFR2 (ENSCAFG00845019372) #14 ATE1 (ENSCAFG00845020272) #15 ATE1OS (ENSCAFG00845020507) #16 NSMCE4A (ENSCAFG00845020544) #17 TACC2 (ENSCAFG00845020783) #18 BTBD16 (ENSCAFG00845021873) #19 PLEKHA1 (ENSCAFG00845022104) #20 HTRA1 (ENSCAFG00845022222) #21 ENSCAFG00845022418 #22 ENSCAFG00845023612 #22 ENSCAFG00845023643 ##22 C10orf120 (ENSCAFG00845023695) #24 ENSCAFG00845023783 #25 CUZD1 (ENSCAFG00845024055) #27 ENSCAFG00845024126 #28 ENSCAFG00845024159 #29 ENSCAFG00845024221 #29 PSTK (ENSCAFG00845024287) IKZF5 (ENSCAFG00845024334) ACADSB (ENSCAFG00845024388) HMX3 (ENSCAFG00845024473) HMX2 (ENSCAFG00845024515) PSTK (ENSCAFG00845024586) GPR26 (ENSCAFG00845024706) Canis_lupus ANCESTRAL SPECIES 20 ENSGT00390000004380.e.a.a ENSGT00940000163657.f ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E.kb.b #22 ENSGT00950000183145.E.kb.a #22 ENSGT00950000183145.B.a.b ##22 ENSGT00950000183145.E.lb #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.b #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00390000017384.hb.f #29 ENSGT00390000017384.hb.e #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Dingo DUPLICATION Dingo MODERN SPECIES 165 MCMBP (ENSCAFG00020014655) #10 SEC23IP (ENSCAFG00020014659) #11 ENSCAFG00020014663 ENSCAFG00020014666 PLPP4 (ENSCAFG00020014668) #12 WDR11 (ENSCAFG00020014683) #13 FGFR2 (ENSCAFG00020014779) #14 ATE1 (ENSCAFG00020014791) #15 ENSCAFG00020014813 #16 ENSCAFG00020014819 #17 TACC2 (ENSCAFG00020014827) #18 BTBD16 (ENSCAFG00020015057) #19 PLEKHA1 (ENSCAFG00020015085) #20 HTRA1 (ENSCAFG00020015096) #21 ENSCAFG00020015148 #22 ENSCAFG00020015160 #22 ENSCAFG00020015167 #22 ENSCAFG00020015171 #22 C10orf120 (ENSCAFG00020015180) #24 ENSCAFG00020015184 #25 ENSCAFG00020015187 #25 ENSCAFG00020015189 #25 CUZD1 (ENSCAFG00020015193) #27 ENSCAFG00020015197 #29 ENSCAFG00020015204 #29 PSTK (ENSCAFG00020015208) IKZF5 (ENSCAFG00020015212) ACADSB (ENSCAFG00020015216) HMX3 (ENSCAFG00020015221) HMX2 (ENSCAFG00020015225) BUB3 (ENSCAFG00020015234) Dingo MODERN SPECIES 165 INPP5F (ENSCAFG00020013935) #9 MCMBP (ENSCAFG00020014655) #10 SEC23IP (ENSCAFG00020014659) #11 ENSCAFG00020014663 ENSCAFG00020014666 PLPP4 (ENSCAFG00020014668) #12 WDR11 (ENSCAFG00020014683) #13 FGFR2 (ENSCAFG00020014779) #14 ATE1 (ENSCAFG00020014791) #15 ENSCAFG00020014813 #16 ENSCAFG00020014819 #17 TACC2 (ENSCAFG00020014827) #18 BTBD16 (ENSCAFG00020015057) #19 PLEKHA1 (ENSCAFG00020015085) #20 HTRA1 (ENSCAFG00020015096) #21 ENSCAFG00020015148 #22 ENSCAFG00020015160 #22 ENSCAFG00020015167 #22 ENSCAFG00020015171 #22 C10orf120 (ENSCAFG00020015180) #24 ENSCAFG00020015184 #25 ENSCAFG00020015187 #25 ENSCAFG00020015189 #25 CUZD1 (ENSCAFG00020015193) #27 ENSCAFG00020015197 #29 ENSCAFG00020015204 #29 PSTK (ENSCAFG00020015208) IKZF5 (ENSCAFG00020015212) ACADSB (ENSCAFG00020015216) HMX3 (ENSCAFG00020015221) HMX2 (ENSCAFG00020015225) Dingo MODERN SPECIES 165 ENSCAFG00020014663 ENSCAFG00020014666 PLPP4 (ENSCAFG00020014668) #12 WDR11 (ENSCAFG00020014683) #13 FGFR2 (ENSCAFG00020014779) #14 ATE1 (ENSCAFG00020014791) #15 ENSCAFG00020014813 #16 ENSCAFG00020014819 #17 TACC2 (ENSCAFG00020014827) #18 BTBD16 (ENSCAFG00020015057) #19 PLEKHA1 (ENSCAFG00020015085) #20 HTRA1 (ENSCAFG00020015096) #21 ENSCAFG00020015148 #22 ENSCAFG00020015160 #22 ENSCAFG00020015167 #22 ENSCAFG00020015171 #22 C10orf120 (ENSCAFG00020015180) #24 ENSCAFG00020015184 #25 ENSCAFG00020015187 #25 ENSCAFG00020015189 #25 CUZD1 (ENSCAFG00020015193) #27 ENSCAFG00020015197 #29 ENSCAFG00020015204 #29 PSTK (ENSCAFG00020015208) IKZF5 (ENSCAFG00020015212) ACADSB (ENSCAFG00020015216) HMX3 (ENSCAFG00020015221) HMX2 (ENSCAFG00020015225) BUB3 (ENSCAFG00020015234) GPR26 (ENSCAFG00020015240) CPXM2 (ENSCAFG00020015264) Red fox DUPLICATION Red fox MODERN SPECIES SEC23IP (ENSVVUG00000011215) #11 ENSVVUG00000011255 PLPP4 (ENSVVUG00000011275) #12 ENSVVUG00000011295 WDR11 (ENSVVUG00000011299) #13 FGFR2 (ENSVVUG00000011385) #14 ATE1 (ENSVVUG00000011469) #15 ENSVVUG00000011488 #16 NSMCE4A (ENSVVUG00000011499) #17 TACC2 (ENSVVUG00000011536) #18 BTBD16 (ENSVVUG00000011562) #19 PLEKHA1 (ENSVVUG00000011580) #20 HTRA1 (ENSVVUG00000011603) #21 ENSVVUG00000011630 ##22 ENSVVUG00000011639 #22 ENSVVUG00000011643 #22 Red fox MODERN SPECIES MCMBP (ENSVVUG00000011144) #10 SEC23IP (ENSVVUG00000011215) #11 ENSVVUG00000011255 PLPP4 (ENSVVUG00000011275) #12 ENSVVUG00000011295 WDR11 (ENSVVUG00000011299) #13 FGFR2 (ENSVVUG00000011385) #14 ATE1 (ENSVVUG00000011469) #15 ENSVVUG00000011488 #16 NSMCE4A (ENSVVUG00000011499) #17 TACC2 (ENSVVUG00000011536) #18 BTBD16 (ENSVVUG00000011562) #19 PLEKHA1 (ENSVVUG00000011580) #20 HTRA1 (ENSVVUG00000011603) #21 ENSVVUG00000011630 ##22 ENSVVUG00000011639 #22 ENSVVUG00000011643 #22 Felidae ANCESTRAL SPECIES 14 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00390000017384.ib #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Panthera ANCESTRAL SPECIES 8 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00390000017384.ib #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Tiger MODERN SPECIES 210 TIAL1 (ENSPTIG00000007899) #7 BAG3 (ENSPTIG00000009763) #8 INPP5F (ENSPTIG00000011407) #9 MCMBP (ENSPTIG00000014781) #10 SEC23IP (ENSPTIG00000017676) #11 PLPP4 (ENSPTIG00000018990) #12 WDR11 (ENSPTIG00000001166) #13 ENSPTIG00000007977 #14 ENSPTIG00000021238 #14 ATE1 (ENSPTIG00000021995) #15 NSMCE4A (ENSPTIG00000022082) #17 ENSPTIG00000022110 #18 BTBD16 (ENSPTIG00000014571) #19 PLEKHA1 (ENSPTIG00000015102) #20 ENSPTIG00000018456 #21 ENSPTIG00000019475 #22 C10orf120 (ENSPTIG00000021374) #24 ENSPTIG00000003767 #25 CUZD1 (ENSPTIG00000005962) #27 ENSPTIG00000007416 #28 Cat MODERN SPECIES 242 BAG3 (ENSFCAG00000023182) #8 INPP5F (ENSFCAG00000024040) #9 MCMBP (ENSFCAG00000014907) #10 SEC23IP (ENSFCAG00000014908) #11 PLPP4 (ENSFCAG00000042026) #12 WDR11 (ENSFCAG00000014314) #13 FGFR2 (ENSFCAG00000003692) #14 ATE1 (ENSFCAG00000027935) #15 TACC2 (ENSFCAG00000026479) #18 NSMCE4A (ENSFCAG00000003647) #17 BTBD16 (ENSFCAG00000003652) #19 PLEKHA1 (ENSFCAG00000023664) #20 HTRA1 (ENSFCAG00000003656) #21 ENSFCAG00000048419 ENSFCAG00000047757 ENSFCAG00000003657 #22 ENSFCAG00000026044 #25 C10orf120 (ENSFCAG00000035584) #24 ENSFCAG00000029545 #27 ENSFCAG00000041375 #28 ENSFCAG00000007571 #29 ENSFCAG00000030445 #29 PSTK (ENSFCAG00000027434) IKZF5 (ENSFCAG00000041709) ACADSB (ENSFCAG00000003421) ENSFCAG00000048422 HMX3 (ENSFCAG00000041528) HMX2 (ENSFCAG00000042782) BUB3 (ENSFCAG00000024986) ENSFCAG00000045983 CPXM2 (ENSFCAG00000013258) Euarchontoglires ANCESTRAL SPECIES 16 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 Euarchontoglires_A ANCESTRAL SPECIES 15 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000164044 #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Tree shrew MODERN SPECIES 4262 HTRA1 (ENSTBEG00000007636) #21 ENSTBEG00000008207 #22 Glires ANCESTRAL SPECIES 16 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000171163 ENSGT00940000164044 #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Lagomorpha ANCESTRAL SPECIES 17 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 Rabbit MODERN SPECIES 9 BAG3 (ENSOCUG00000011696) #8 INPP5F (ENSOCUG00000002226) #9 MCMBP (ENSOCUG00000002235) #10 SEC23IP (ENSOCUG00000003141) #11 ENSOCUG00000017933 #12 WDR11 (ENSOCUG00000013912) #13 ENSOCUG00000001764 FGFR2 (ENSOCUG00000007069) #14 ATE1 (ENSOCUG00000003373) #15 NSMCE4A (ENSOCUG00000000820) #17 ENSOCUG00000026111 #18 ENSOCUG00000000821 #18 BTBD16 (ENSOCUG00000000825) #19 PLEKHA1 (ENSOCUG00000002100) #20 HTRA1 (ENSOCUG00000013478) #21 ENSOCUG00000013488 #22 ENSOCUG00000032261 C10orf120 (ENSOCUG00000006564) #24 CYP2E1 (ENSOCUG00000007724) ENSOCUG00000007271 ENSOCUG00000016735 ENSOCUG00000026878 ENSOCUG00000023927 MTG1 (ENSOCUG00000000484) PAOX (ENSOCUG00000000479) ECHS1 (ENSOCUG00000000473) ENSOCUG00000000470 ENSOCUG00000029628 ADAM8 (ENSOCUG00000001216) ENSOCUG00000017194 CALY (ENSOCUG00000029346) Rodentia ANCESTRAL SPECIES 16 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.b #30 ENSGT00940000164044.a #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Rodentia_B ANCESTRAL SPECIES 10 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602.g.a #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.b #30 ENSGT00940000164044.a #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Myomorpha ANCESTRAL SPECIES 1 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602.g.b #11 ENSGT00940000156602.g.a #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.b #30 ENSGT00940000164044.a #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Muroidea ANCESTRAL SPECIES 1 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602.g.b #11 ENSGT00940000156602.g.a #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.b #30 ENSGT00940000164044.a #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Muroidea_A ANCESTRAL SPECIES ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602.g.b #11 ENSGT00940000156602.g.a #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.b #30 ENSGT00940000164044.a #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Cricetidae ANCESTRAL SPECIES 1 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602.g.b #11 ENSGT00940000156602.g.a #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.b #30 ENSGT00940000171163 ENSGT00940000164044.a #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Cricetidae_B ANCESTRAL SPECIES 1 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602.g.a #11 ENSGT00940000156602.g.b #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.a #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES Mcmbp (ENSPEMG00000021598) #10 Sec23ip (ENSPEMG00000022060) #11 ENSPEMG00000025267 Plpp4 (ENSPEMG00000022713) #12 Wdr11 (ENSPEMG00000022330) #13 Fgfr2 (ENSPEMG00000014436) #14 Ate1 (ENSPEMG00000022740) #15 ENSPEMG00000025302 #16 Nsmce4a (ENSPEMG00000021690) #17 ENSPEMG00000009363 #18 ENSPEMG00000030243 #18 Btbd16 (ENSPEMG00000021258) #19 Plekha1 (ENSPEMG00000021169) #20 Htra1 (ENSPEMG00000022401) #21 ENSPEMG00000028257 #22 ENSPEMG00000024600 #22 4933402N03Rik (ENSPEMG00000021538) #24 Cdcp3 (ENSPEMG00000020751) #25 Cuzd1 (ENSPEMG00000022588) #27 Fam24a (ENSPEMG00000031419) #30 2310057M21Rik (ENSPEMG00000020879) #29 Pstk (ENSPEMG00000020718) Ikzf5 (ENSPEMG00000025067) Acadsb (ENSPEMG00000023029) Hmx3 (ENSPEMG00000020746) Hmx2 (ENSPEMG00000020567) Bub3 (ENSPEMG00000022008) Gpr26 (ENSPEMG00000021661) Cpxm2 (ENSPEMG00000010409) Chst15 (ENSPEMG00000025384) Oat (ENSPEMG00000000214) Northern American deer mouse MODERN SPECIES Inpp5f (ENSPEMG00000023406) #9 Mcmbp (ENSPEMG00000021598) #10 Sec23ip (ENSPEMG00000022060) #11 ENSPEMG00000025267 Plpp4 (ENSPEMG00000022713) #12 Wdr11 (ENSPEMG00000022330) #13 Fgfr2 (ENSPEMG00000014436) #14 Ate1 (ENSPEMG00000022740) #15 ENSPEMG00000025302 #16 Nsmce4a (ENSPEMG00000021690) #17 ENSPEMG00000009363 #18 ENSPEMG00000030243 #18 Btbd16 (ENSPEMG00000021258) #19 Plekha1 (ENSPEMG00000021169) #20 Htra1 (ENSPEMG00000022401) #21 ENSPEMG00000028257 #22 ENSPEMG00000024600 #22 4933402N03Rik (ENSPEMG00000021538) #24 Cdcp3 (ENSPEMG00000020751) #25 Cuzd1 (ENSPEMG00000022588) #27 Fam24a (ENSPEMG00000031419) #30 2310057M21Rik (ENSPEMG00000020879) #29 Pstk (ENSPEMG00000020718) Ikzf5 (ENSPEMG00000025067) Acadsb (ENSPEMG00000023029) Hmx3 (ENSPEMG00000020746) Hmx2 (ENSPEMG00000020567) Bub3 (ENSPEMG00000022008) Gpr26 (ENSPEMG00000021661) Cpxm2 (ENSPEMG00000010409) Chst15 (ENSPEMG00000025384) Murinae ANCESTRAL SPECIES ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602.g.a #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.b #30 ENSGT00940000164044.a #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Mus ANCESTRAL SPECIES ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602.g.a #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.b #30 ENSGT00940000164044.a #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Mus_A ANCESTRAL SPECIES 1 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602.g.a #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.b #30 ENSGT00940000164044.a #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Mus_B ANCESTRAL SPECIES ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602.g.a #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.b #30 ENSGT00940000164044.a #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Mouse MODERN SPECIES 16 Rgs10 (ENSMUSG00000030844) Tial1 (ENSMUSG00000030846) #7 Bag3 (ENSMUSG00000030847) #8 Inpp5f (ENSMUSG00000042105) #9 Mcmbp (ENSMUSG00000048170) #10 Sec23ip (ENSMUSG00000055319) #11 Plpp4 (ENSMUSG00000070366) #12 Wdr11 (ENSMUSG00000042055) #13 Fgfr2 (ENSMUSG00000030849) #14 Ate1 (ENSMUSG00000030850) #15 Nsmce4a (ENSMUSG00000040331) #17 Tacc2 (ENSMUSG00000030852) #18 Btbd16 (ENSMUSG00000040298) #19 Plekha1 (ENSMUSG00000040268) #20 Htra1 (ENSMUSG00000006205) #21 Dmbt1 (ENSMUSG00000047517) #22 4933402N03Rik (ENSMUSG00000013668) #24 Cdcp3 (ENSMUSG00000006204) #25 Cuzd1 (ENSMUSG00000040205) #27 Fam24b (ENSMUSG00000030858) #30 Fam24a (ENSMUSG00000030859) #30 2310057M21Rik (ENSMUSG00000040177) #29 Pstk (ENSMUSG00000063179) Ikzf5 (ENSMUSG00000040167) Acadsb (ENSMUSG00000030861) Hmx3 (ENSMUSG00000040148) Hmx2 (ENSMUSG00000050100) Bub3 (ENSMUSG00000066979) Gpr26 (ENSMUSG00000040125) Cpxm2 (ENSMUSG00000030862) Chst15 (ENSMUSG00000030930) Rat DUPLICATION Rat MODERN SPECIES Mcmbp (ENSRNOG00000020394) #10 Sec23ip (ENSRNOG00000020411) #11 Plpp4 (ENSRNOG00000020424) #12 ENSRNOG00000066085 Wdr11 (ENSRNOG00000020430) #13 LOC102555739 (ENSRNOG00000020446) Fgfr2 (ENSRNOG00000016374) #14 Ate1 (ENSRNOG00000024414) #15 RGD1563285 (ENSRNOG00000069173) #16 Nsmce4a (ENSRNOG00000020452) #17 Tacc2 (ENSRNOG00000020457) #18 Btbd16 (ENSRNOG00000036675) #19 Plekha1 (ENSRNOG00000020497) #20 Htra1 (ENSRNOG00000020533) #21 Dmbt1 (ENSRNOG00000020560) #22 LOC100911413 (ENSRNOG00000034038) #22 C1h10orf120 (ENSRNOG00000022900) #24 Dmbt1l1 (ENSRNOG00000022737) #25 Cuzd1 (ENSRNOG00000029945) #27 RGD1559891 (ENSRNOG00000026440) Fam24b (ENSRNOG00000026419) #30 C1h10orf88 (ENSRNOG00000020597) #29 Pstk (ENSRNOG00000020605) Ikzf5 (ENSRNOG00000025651) Acadsb (ENSRNOG00000020624) Hmx3 (ENSRNOG00000020637) Hmx2 (ENSRNOG00000020638) Bub3 (ENSRNOG00000020643) Gpr26 (ENSRNOG00000047057) Cpxm2 (ENSRNOG00000015902) AABR07005886.1 (ENSRNOG00000053539) Rat MODERN SPECIES Inpp5f (ENSRNOG00000020388) #9 Mcmbp (ENSRNOG00000020394) #10 Sec23ip (ENSRNOG00000020411) #11 Plpp4 (ENSRNOG00000020424) #12 ENSRNOG00000066085 Wdr11 (ENSRNOG00000020430) #13 LOC102555739 (ENSRNOG00000020446) Fgfr2 (ENSRNOG00000016374) #14 Ate1 (ENSRNOG00000024414) #15 RGD1563285 (ENSRNOG00000069173) #16 Nsmce4a (ENSRNOG00000020452) #17 Tacc2 (ENSRNOG00000020457) #18 Btbd16 (ENSRNOG00000036675) #19 Plekha1 (ENSRNOG00000020497) #20 Htra1 (ENSRNOG00000020533) #21 Dmbt1 (ENSRNOG00000020560) #22 LOC100911413 (ENSRNOG00000034038) #22 C1h10orf120 (ENSRNOG00000022900) #24 Dmbt1l1 (ENSRNOG00000022737) #25 Cuzd1 (ENSRNOG00000029945) #27 RGD1559891 (ENSRNOG00000026440) Fam24b (ENSRNOG00000026419) #30 C1h10orf88 (ENSRNOG00000020597) #29 Pstk (ENSRNOG00000020605) Ikzf5 (ENSRNOG00000025651) Acadsb (ENSRNOG00000020624) Hmx3 (ENSRNOG00000020637) Hmx2 (ENSRNOG00000020638) Bub3 (ENSRNOG00000020643) Gpr26 (ENSRNOG00000047057) Cpxm2 (ENSRNOG00000015902) Rodentia_A ANCESTRAL SPECIES 15 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00390000005511 #24 ENSGT00950000183145.E #22 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.b #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Hystricomorpha ANCESTRAL SPECIES 1 ENSGT00940000160482 #7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.b #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.o ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Naked mole-rat female MODERN SPECIES 4 PLPP4 (ENSHGLG00000012927) #12 ENSHGLG00000044013 #30 WDR11 (ENSHGLG00000010871) #13 ENSHGLG00000011201 #14 ENSHGLG00000032507 ENSHGLG00000006514 ENSHGLG00000045128 ENSHGLG00000018201 #15 NSMCE4A (ENSHGLG00000013057) #17 ENSHGLG00000035516 #18 ENSHGLG00000014774 #18 BTBD16 (ENSHGLG00000010643) #19 ENSHGLG00000043818 ENSHGLG00000009809 #20 HTRA1 (ENSHGLG00000011897) #21 ENSHGLG00000014651 #22 ENSHGLG00000045576 ENSHGLG00000041620 #25 ENSHGLG00000014383 ENSHGLG00000047493 ENSHGLG00000011520 ENSHGLG00000044519 ENSHGLG00000039988 ENSHGLG00000033348 ENSHGLG00000014509 TM9SF3 (ENSHGLG00000012450) TLL2 (ENSHGLG00000013626) OPALIN (ENSHGLG00000042100) DNTT (ENSHGLG00000009905) BLNK (ENSHGLG00000012499) ZNF518A (ENSHGLG00000021043) Hystricomorpha_a ANCESTRAL SPECIES 3 ENSGT00940000160482 #7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.b #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035.e.a ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.o ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Hystricomorpha_b ANCESTRAL SPECIES 14 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.b #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035.e.a ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.o ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Degu MODERN SPECIES 51 ENSODEG00000017622 PLPP4 (ENSODEG00000017787) #12 ENSODEG00000017528 WDR11 (ENSODEG00000017999) #13 ENSODEG00000017729 ENSODEG00000017521 FGFR2 (ENSODEG00000017727) #14 ENSODEG00000017613 ATE1 (ENSODEG00000017714) #15 NSMCE4A (ENSODEG00000017586) #17 ENSODEG00000017758 #18 BTBD16 (ENSODEG00000017181) #19 ENSODEG00000017646 ENSODEG00000017854 #20 HTRA1 (ENSODEG00000017523) #21 ENSODEG00000017538 #22 ENSODEG00000017508 ENSODEG00000017380 #25 CUZD1 (ENSODEG00000017550) #27 C10orf88 (ENSODEG00000017572) #29 PSTK (ENSODEG00000017417) ENSODEG00000017599 ACADSB (ENSODEG00000017347) HMX3 (ENSODEG00000017303) HMX2 (ENSODEG00000017125) ENSODEG00000017376 ENSODEG00000020472 GPR26 (ENSODEG00000017488) CPXM2 (ENSODEG00000017290) CHST15 (ENSODEG00000017382) ENSODEG00000017605 Sciuridae ANCESTRAL SPECIES 21 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00390000005511 #24 ENSGT00950000183145.E #22 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000164044.b #30 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Eurasian red squirrel MODERN SPECIES 13 SEC23IP (ENSSVLG00005002496) #11 PLPP4 (ENSSVLG00005002461) #12 WDR11 (ENSSVLG00005002429) #13 FGFR2 (ENSSVLG00005002254) #14 ENSSVLG00005002095 ATE1 (ENSSVLG00005002012) #15 ENSSVLG00005001969 #16 ENSSVLG00005001936 #17 ENSSVLG00005001901 #18 ENSSVLG00005001566 #18 BTBD16 (ENSSVLG00005001375) #19 ENSSVLG00005001346 PLEKHA1 (ENSSVLG00005001323) #20 HTRA1 (ENSSVLG00005001280) #21 ENSSVLG00005001252 #24 ENSSVLG00005001198 #22 ENSSVLG00005001120 #25 CUZD1 (ENSSVLG00005001077) #27 ENSSVLG00005001055 #29 ENSSVLG00005001041 ENSSVLG00005001016 #29 PSTK (ENSSVLG00005000980) IKZF5 (ENSSVLG00005000956) ACADSB (ENSSVLG00005000924) HMX3 (ENSSVLG00005000902) HMX2 (ENSSVLG00005000888) BUB3 (ENSSVLG00005000858) ENSSVLG00005000813 GPR26 (ENSSVLG00005000793) CPXM2 (ENSSVLG00005000773) ENSSVLG00005000742 Marmotini ANCESTRAL SPECIES ENSGT00950000183145.E #22 Marmotini_b ANCESTRAL SPECIES ENSGT00950000183145.E #22 Arctic ground squirrel MODERN SPECIES 28 SEC23IP (ENSUPAG00010006554) #11 ENSUPAG00010006552 PLPP4 (ENSUPAG00010006532) #12 WDR11 (ENSUPAG00010006463) #13 FGFR2 (ENSUPAG00010006384) #14 ATE1 (ENSUPAG00010006266) #15 ENSUPAG00010006255 #16 NSMCE4A (ENSUPAG00010006240) #17 TACC2 (ENSUPAG00010005112) #18 BTBD16 (ENSUPAG00010004978) #19 ENSUPAG00010004971 ENSUPAG00010004924 #20 HTRA1 (ENSUPAG00010004911) #21 ENSUPAG00010004901 #24 ENSUPAG00010004894 ENSUPAG00010004857 #22 CUZD1 (ENSUPAG00010004852) #27 ENSUPAG00010004845 #30 ENSUPAG00010004823 #29 PSTK (ENSUPAG00010004819) IKZF5 (ENSUPAG00010004809) ACADSB (ENSUPAG00010004778) HMX3 (ENSUPAG00010004771) HMX2 (ENSUPAG00010004763) BUB3 (ENSUPAG00010004752) GPR26 (ENSUPAG00010004746) CPXM2 (ENSUPAG00010004732) CHST15 (ENSUPAG00010004726) OAT (ENSUPAG00010004703) NKX1-2 (ENSUPAG00010004701) LHPP (ENSUPAG00010004693) Primates ANCESTRAL SPECIES 16 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a Haplorrhini ANCESTRAL SPECIES 11 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Tarsier MODERN SPECIES 5202 DMBT1 (ENSTSYG00000002122) #22 Simiiformes ANCESTRAL SPECIES 17 ENSGT00940000154259.k.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00440000033468.c.b ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00650000095054 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00390000017384.h #29 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Catarrhini ANCESTRAL SPECIES 18 ENSGT00940000154259.k.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00440000033468.c.b ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00650000095054 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00390000017384.h #29 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Hominoidea ANCESTRAL SPECIES 11 ENSGT00940000159204 #8 ENSGT00940000154259.k.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00650000095054 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00390000017384.h #29 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.g ENSGT00950000183001.a.a ENSGT00910000147603 Hominidae ANCESTRAL SPECIES 13 ENSGT00940000159204 #8 ENSGT00940000154259.k.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00650000095054 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00390000017384.h #29 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.g ENSGT00950000183001.a.a ENSGT00910000147603 Homo/Pan/Gorilla group ANCESTRAL SPECIES 17 ENSGT00940000159204 #8 ENSGT00940000154259.k.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00650000095054 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00390000017384.h #29 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.g ENSGT00950000183001.a.a ENSGT00910000147603 Homo/Pan group ANCESTRAL SPECIES 18 ENSGT00940000159204 #8 ENSGT00940000154259.k.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00650000095054 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00390000017384.h #29 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.g ENSGT00950000183001.a.a ENSGT00910000147603 Pan ANCESTRAL SPECIES 16 ENSGT00940000159204 #8 ENSGT00940000154259.k.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00650000095054 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00390000017384.h #29 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.g ENSGT00950000183001.a.a ENSGT00910000147603 ENSGT00940000156414 Bonobo MODERN SPECIES 1 ENSPPAG00000030508 INPP5F (ENSPPAG00000028448) #9 MCMBP (ENSPPAG00000041372) #10 SEC23IP (ENSPPAG00000021343) #11 ENSPPAG00000035383 PLPP4 (ENSPPAG00000040406) #12 WDR11 (ENSPPAG00000034753) #13 FGFR2 (ENSPPAG00000034123) #14 ATE1 (ENSPPAG00000039734) #15 ENSPPAG00000035638 #17 TACC2 (ENSPPAG00000038587) #18 BTBD16 (ENSPPAG00000042790) #19 PLEKHA1 (ENSPPAG00000003709) #20 ARMS2 (ENSPPAG00000041770) HTRA1 (ENSPPAG00000000055) #21 DMBT1 (ENSPPAG00000029246) #22 C10orf120 (ENSPPAG00000027128) #24 CUZD1 (ENSPPAG00000038806) #27 FAM24B (ENSPPAG00000030186) #28 ENSPPAG00000026413 #29 FAM24A (ENSPPAG00000029503) #28 C10orf88 (ENSPPAG00000040286) #29 PSTK (ENSPPAG00000030978) IKZF5 (ENSPPAG00000032125) ACADSB (ENSPPAG00000036912) HMX3 (ENSPPAG00000043159) ENSPPAG00000043570 BUB3 (ENSPPAG00000030058) ENSPPAG00000040773 ENSPPAG00000024928 CPXM2 (ENSPPAG00000037917) Chimpanzee MODERN SPECIES 1 ENSPTRG00000051748 INPP5F (ENSPTRG00000022873) #9 MCMBP (ENSPTRG00000003000) #10 SEC23IP (ENSPTRG00000003001) #11 ENSPTRG00000048120 PLPP4 (ENSPTRG00000029684) #12 WDR11 (ENSPTRG00000003004) #13 FGFR2 (ENSPTRG00000003003) #14 ATE1 (ENSPTRG00000003005) #15 NSMCE4A (ENSPTRG00000003006) #17 TACC2 (ENSPTRG00000003008) #18 BTBD16 (ENSPTRG00000003009) #19 PLEKHA1 (ENSPTRG00000003010) #20 ARMS2 (ENSPTRG00000051999) HTRA1 (ENSPTRG00000003011) #21 DMBT1 (ENSPTRG00000022758) #22 C10H10orf120 (ENSPTRG00000003012) #24 CUZD1 (ENSPTRG00000003015) #27 FAM24B (ENSPTRG00000034300) #28 ENSPTRG00000048474 #29 FAM24A (ENSPTRG00000029673) #28 C10H10orf88 (ENSPTRG00000003017) #29 PSTK (ENSPTRG00000003018) IKZF5 (ENSPTRG00000003019) ACADSB (ENSPTRG00000003020) HMX3 (ENSPTRG00000046925) HMX2 (ENSPTRG00000047334) BUB3 (ENSPTRG00000044868) GPR26 (ENSPTRG00000045403) ENSPTRG00000043279 CPXM2 (ENSPTRG00000003027) Human MODERN SPECIES 1 TIAL1 (ENSG00000151923) #7 BAG3 (ENSG00000151929) #8 INPP5F (ENSG00000198825) #9 MCMBP (ENSG00000197771) #10 SEC23IP (ENSG00000107651) #11 PLPP4 (ENSG00000203805) #12 WDR11 (ENSG00000120008) #13 FGFR2 (ENSG00000066468) #14 ATE1 (ENSG00000107669) #15 NSMCE4A (ENSG00000107672) #17 TACC2 (ENSG00000138162) #18 BTBD16 (ENSG00000138152) #19 PLEKHA1 (ENSG00000107679) #20 ARMS2 (ENSG00000254636) HTRA1 (ENSG00000166033) #21 DMBT1 (ENSG00000187908) #22 SPADH (ENSG00000286135) #23 C10orf120 (ENSG00000183559) #24 CUZD1 (ENSG00000138161) #27 FAM24B (ENSG00000213185) #28 FAM24A (ENSG00000203795) #28 C10orf88 (ENSG00000119965) #29 PSTK (ENSG00000179988) IKZF5 (ENSG00000095574) ACADSB (ENSG00000196177) HMX3 (ENSG00000188620) HMX2 (ENSG00000188816) BUB3 (ENSG00000154473) GPR26 (ENSG00000154478) CPXM2 (ENSG00000121898) CHST15 (ENSG00000182022) Orangutan MODERN SPECIES 1 BAG3 (ENSPPYG00000002705) #8 ENSPPYG00000031900 INPP5F (ENSPPYG00000002706) #9 MCMBP (ENSPPYG00000002707) #10 SEC23IP (ENSPPYG00000002708) #11 ENSPPYG00000030022 PLPP4 (ENSPPYG00000002709) #12 WDR11 (ENSPPYG00000029859) #13 FGFR2 (ENSPPYG00000002710) #14 ATE1 (ENSPPYG00000002711) #15 NSMCE4A (ENSPPYG00000002712) #17 TACC2 (ENSPPYG00000002713) #18 BTBD16 (ENSPPYG00000002714) #19 PLEKHA1 (ENSPPYG00000002715) #20 HTRA1 (ENSPPYG00000002716) #21 ENSPPYG00000002717 #22 SPADH (ENSPPYG00000002718) #23 C10orf120 (ENSPPYG00000002719) #24 CUZD1 (ENSPPYG00000002722) #27 ENSPPYG00000030182 #28 ENSPPYG00000037859 #29 FAM24A (ENSPPYG00000002724) #28 C10orf88 (ENSPPYG00000002725) #29 PSTK (ENSPPYG00000002726) IKZF5 (ENSPPYG00000038620) ACADSB (ENSPPYG00000002728) HMX3 (ENSPPYG00000002729) HMX2 (ENSPPYG00000033793) BUB3 (ENSPPYG00000002731) GPR26 (ENSPPYG00000002734) CPXM2 (ENSPPYG00000002735) Gibbon MODERN SPECIES 18 BAG3 (ENSNLEG00000016750) #8 ENSNLEG00000029480 INPP5F (ENSNLEG00000016753) #9 MCMBP (ENSNLEG00000016770) #10 SEC23IP (ENSNLEG00000016780) #11 PLPP4 (ENSNLEG00000028427) #12 WDR11 (ENSNLEG00000016815) #13 FGFR2 (ENSNLEG00000016854) #14 ATE1 (ENSNLEG00000016908) #15 NSMCE4A (ENSNLEG00000016919) #17 TACC2 (ENSNLEG00000016926) #18 BTBD16 (ENSNLEG00000016981) #19 PLEKHA1 (ENSNLEG00000016991) #20 ARMS2 (ENSNLEG00000016999) HTRA1 (ENSNLEG00000017001) #21 ENSNLEG00000017018 #22 C10orf120 (ENSNLEG00000017025) #24 CUZD1 (ENSNLEG00000017027) #27 FAM24B (ENSNLEG00000028659) #28 ENSNLEG00000017042 #29 FAM24A (ENSNLEG00000017045) #28 C10orf88 (ENSNLEG00000017047) #29 PSTK (ENSNLEG00000029733) IKZF5 (ENSNLEG00000027055) ACADSB (ENSNLEG00000026715) HMX3 (ENSNLEG00000032860) HMX2 (ENSNLEG00000033504) BUB3 (ENSNLEG00000030093) GPR26 (ENSNLEG00000030894) ENSNLEG00000027584 CPXM2 (ENSNLEG00000017056) Cercopithecidae ANCESTRAL SPECIES 15 ENSGT00940000159204 #8 ENSGT00940000154259.k.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00650000095054 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00910000148049 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.i.a ENSGT00950000183001.a.a Rhinopithecus ANCESTRAL SPECIES 34 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000154259.k.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.a.a #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00390000017384.h #29 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00910000148049 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.i.a ENSGT00950000183001.a.a ENSGT00940000156414 Black snub-nosed monkey MODERN SPECIES 403 IGF2BP3 (ENSRBIG00000033008) MALSU1 (ENSRBIG00000043513) INPP5F (ENSRBIG00000029982) #9 MCMBP (ENSRBIG00000043184) #10 SEC23IP (ENSRBIG00000016638) #11 PLPP4 (ENSRBIG00000028012) #12 WDR11 (ENSRBIG00000030219) #13 FGFR2 (ENSRBIG00000028118) #14 ENSRBIG00000037682 ATE1 (ENSRBIG00000039407) #15 NSMCE4A (ENSRBIG00000032411) #17 TACC2 (ENSRBIG00000029332) #18 BTBD16 (ENSRBIG00000032916) #19 PLEKHA1 (ENSRBIG00000033706) #20 HTRA1 (ENSRBIG00000037080) #21 ENSRBIG00000044070 #22 Golden snub-nosed monkey MODERN SPECIES 813 TACC2 (ENSRROG00000041105) #18 BTBD16 (ENSRROG00000039453) #19 PLEKHA1 (ENSRROG00000034004) #20 HTRA1 (ENSRROG00000039096) #21 DMBT1 (ENSRROG00000037950) #22 C10orf120 (ENSRROG00000040542) #24 CUZD1 (ENSRROG00000034208) #27 FAM24B (ENSRROG00000044993) #28 FAM24A (ENSRROG00000025149) #28 C10orf88 (ENSRROG00000026348) #29 ENSRROG00000042113 PSTK (ENSRROG00000010210) IKZF5 (ENSRROG00000023471) ACADSB (ENSRROG00000042969) HMX3 (ENSRROG00000039758) HMX2 (ENSRROG00000038682) ENSRROG00000043912 GPR26 (ENSRROG00000034092) CPXM2 (ENSRROG00000034798) CHST15 (ENSRROG00000036235) Cercopithecinae ANCESTRAL SPECIES 15 ENSGT00940000159204 #8 ENSGT00940000154259.k.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00650000095054 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00910000148049 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.i.a ENSGT00950000183001.a.a Vervet Monkey MODERN SPECIES 28 RGS10 (ENSCSAG00000004742) TIAL1 (ENSCSAG00000004734) #7 BAG3 (ENSCSAG00000004728) #8 INPP5F (ENSCSAG00000004724) #9 MCMBP (ENSCSAG00000004719) #10 SEC23IP (ENSCSAG00000004713) #11 PLPP4 (ENSCSAG00000004702) #12 WDR11 (ENSCSAG00000004694) #13 FGFR2 (ENSCSAG00000004685) #14 ATE1 (ENSCSAG00000004660) #15 NSMCE4A (ENSCSAG00000004638) #17 TACC2 (ENSCSAG00000004625) #18 BTBD16 (ENSCSAG00000004617) #19 PLEKHA1 (ENSCSAG00000004609) #20 HTRA1 (ENSCSAG00000004604) #21 ENSCSAG00000004600 #22 C10orf120 (ENSCSAG00000004594) #24 CUZD1 (ENSCSAG00000004585) #27 FAM24B (ENSCSAG00000004575) #28 FAM24A (ENSCSAG00000004571) #28 C10orf88 (ENSCSAG00000004568) #29 PSTK (ENSCSAG00000004563) IKZF5 (ENSCSAG00000004558) ACADSB (ENSCSAG00000004557) HMX3 (ENSCSAG00000004552) HMX2 (ENSCSAG00000004550) BUB3 (ENSCSAG00000004547) GPR26 (ENSCSAG00000004541) CPXM2 (ENSCSAG00000004539) CHST15 (ENSCSAG00000004534) OAT (ENSCSAG00000004531) Cercopithecinae_a ANCESTRAL SPECIES 14 ENSGT00940000159204 #8 ENSGT00940000154259.k.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00650000095054 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00910000148049 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.i.a ENSGT00950000183001.a.a Cercopithecinae_b ANCESTRAL SPECIES 14 ENSGT00940000159204 #8 ENSGT00940000154259.k.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00650000095054 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.i.a ENSGT00950000183001.a.a ENSGT00910000147603 ENSGT00940000156414 ENSGT00390000004719 Cercopithecinae_d ANCESTRAL SPECIES 64 ENSGT00940000159204 #8 ENSGT00940000154259.k.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00650000095054 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.i.a ENSGT00950000183001.a.a ENSGT00910000147603 ENSGT00940000156414 ENSGT00390000004719 Sooty mangabey MODERN SPECIES 527 ENSCATG00000036096 INPP5F (ENSCATG00000016832) #9 MCMBP (ENSCATG00000035237) #10 SEC23IP (ENSCATG00000031879) #11 ENSCATG00000039059 PLPP4 (ENSCATG00000008532) #12 WDR11 (ENSCATG00000043471) #13 FGFR2 (ENSCATG00000037271) #14 ATE1 (ENSCATG00000039070) #15 NSMCE4A (ENSCATG00000037970) #17 TACC2 (ENSCATG00000000364) #18 BTBD16 (ENSCATG00000012464) #19 PLEKHA1 (ENSCATG00000005094) #20 ARMS2 (ENSCATG00000026311) HTRA1 (ENSCATG00000038268) #21 DMBT1 (ENSCATG00000044187) #22 C10orf120 (ENSCATG00000033658) #24 ENSCATG00000036116 FAM24B (ENSCATG00000043992) #28 FAM24A (ENSCATG00000037982) #28 C10orf88 (ENSCATG00000038112) #29 PSTK (ENSCATG00000038639) IKZF5 (ENSCATG00000035777) ACADSB (ENSCATG00000035743) HMX3 (ENSCATG00000037673) HMX2 (ENSCATG00000017605) ENSCATG00000045202 ENSCATG00000012261 GPR26 (ENSCATG00000033714) ENSCATG00000008393 CPXM2 (ENSCATG00000023297) Olive baboon MODERN SPECIES 2 BAG3 (ENSPANG00000020521) #8 INPP5F (ENSPANG00000020522) #9 MCMBP (ENSPANG00000020524) #10 SEC23IP (ENSPANG00000020516) #11 PLPP4 (ENSPANG00000020515) #12 WDR11 (ENSPANG00000020499) #13 ENSPANG00000038420 ENSPANG00000044749 FGFR2 (ENSPANG00000020505) #14 ATE1 (ENSPANG00000020496) #15 NSMCE4A (ENSPANG00000020473) #17 TACC2 (ENSPANG00000020477) #18 BTBD16 (ENSPANG00000020479) #19 PLEKHA1 (ENSPANG00000020481) #20 HTRA1 (ENSPANG00000020482) #21 ENSPANG00000020483 #22 ENSPANG00000037364 SPADH (ENSPANG00000044363) #23 C10orf120 (ENSPANG00000046689) #24 CUZD1 (ENSPANG00000020487) #27 FAM24A (ENSPANG00000020495) #28 C10orf88 (ENSPANG00000020468) #29 PSTK (ENSPANG00000020470) IKZF5 (ENSPANG00000020471) ACADSB (ENSPANG00000020466) HMX3 (ENSPANG00000046945) HMX2 (ENSPANG00000043894) ENSPANG00000020351 GPR26 (ENSPANG00000020352) CPXM2 (ENSPANG00000020354) ENSPANG00000039743 Macaca ANCESTRAL SPECIES 11 ENSGT00500000044913.b ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00650000095054 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00910000148049 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.i.a ENSGT00950000183001.a.a Pig-tailed macaque MODERN SPECIES 92 WDR11 (ENSMNEG00000036981) #13 FGFR2 (ENSMNEG00000040871) #14 ATE1 (ENSMNEG00000039140) #15 NSMCE4A (ENSMNEG00000029721) #17 TACC2 (ENSMNEG00000035162) #18 BTBD16 (ENSMNEG00000043402) #19 PLEKHA1 (ENSMNEG00000042304) #20 ARMS2 (ENSMNEG00000037085) HTRA1 (ENSMNEG00000039398) #21 ENSMNEG00000035126 #22 C10orf120 (ENSMNEG00000032555) #24 CUZD1 (ENSMNEG00000033847) #27 FAM24B (ENSMNEG00000032458) #28 FAM24A (ENSMNEG00000039220) #28 C10orf88 (ENSMNEG00000033455) #29 ENSMNEG00000032659 PSTK (ENSMNEG00000029291) IKZF5 (ENSMNEG00000036978) ACADSB (ENSMNEG00000031260) HMX3 (ENSMNEG00000043084) HMX2 (ENSMNEG00000028435) ENSMNEG00000000049 GPR26 (ENSMNEG00000032420) ENSMNEG00000012185 CPXM2 (ENSMNEG00000042070) Macaca_a ANCESTRAL SPECIES 13 ENSGT00940000161627.a.a.a.b.b.b.a.a.a.a.c.a ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.a.b.b.b.a.b.a.b.b.a ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00910000148049 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.i.a ENSGT00950000183001.a.a Crab-eating macaque MODERN SPECIES 19 SEC23IP (ENSMFAG00000042549) #11 ENSMFAG00000037481 #12 ENSMFAG00000062414 ENSMFAG00000065246 WDR11 (ENSMFAG00000031615) #13 ENSMFAG00000051354 FGFR2 (ENSMFAG00000045752) #14 ENSMFAG00000063455 ATE1 (ENSMFAG00000043722) #15 NSMCE4A (ENSMFAG00000000251) #17 TACC2 (ENSMFAG00000037369) #18 BTBD16 (ENSMFAG00000002237) #19 PLEKHA1 (ENSMFAG00000041484) #20 HTRA1 (ENSMFAG00000044439) #21 ENSMFAG00000062863 DMBT1 (ENSMFAG00000003903) #22 SPADH (ENSMFAG00000049536) #23 C10orf120 (ENSMFAG00000041530) #24 ENSMFAG00000046495 #25 CUZD1 (ENSMFAG00000033660) #27 FAM24B (ENSMFAG00000061971) #28 FAM24A (ENSMFAG00000060945) #28 C10orf88 (ENSMFAG00000062466) #29 ENSMFAG00000061411 ENSMFAG00000064549 PSTK (ENSMFAG00000036565) IKZF5 (ENSMFAG00000046268) ACADSB (ENSMFAG00000034302) ENSMFAG00000041320 BUB3 (ENSMFAG00000044849) ENSMFAG00000053162 Rhesus DUPLICATION Rhesus MODERN SPECIES 19 ENSMMUG00000065302 SEC23IP (ENSMMUG00000009561) #11 PLPP4 (ENSMMUG00000008724) #12 ENSMMUG00000064321 ENSMMUG00000064557 WDR11 (ENSMMUG00000001118) #13 FGFR2 (ENSMMUG00000009594) #14 ENSMMUG00000059094 ATE1 (ENSMMUG00000021594) #15 NSMCE4A (ENSMMUG00000012044) #17 TACC2 (ENSMMUG00000013033) #18 BTBD16 (ENSMMUG00000013038) #19 PLEKHA1 (ENSMMUG00000013040) #20 HTRA1 (ENSMMUG00000056637) #21 ENSMMUG00000065343 #22 ENSMMUG00000021138 #22 SPADH (ENSMMUG00000052634) #23 C9H10orf120 (ENSMMUG00000021140) #24 CUZD1 (ENSMMUG00000010458) #27 FAM24A (ENSMMUG00000057705) #28 C9H10orf88 (ENSMMUG00000008564) #29 PSTK (ENSMMUG00000017858) IKZF5 (ENSMMUG00000023480) ACADSB (ENSMMUG00000000684) HMX3 (ENSMMUG00000003090) HMX2 (ENSMMUG00000053104) BUB3 (ENSMMUG00000003092) GPR26 (ENSMMUG00000053995) CPXM2 (ENSMMUG00000020346) ENSMMUG00000056443 ENSMMUG00000046183 Rhesus MODERN SPECIES 19 MCMBP (ENSMMUG00000009559) #10 ENSMMUG00000065302 SEC23IP (ENSMMUG00000009561) #11 PLPP4 (ENSMMUG00000008724) #12 ENSMMUG00000064321 ENSMMUG00000064557 WDR11 (ENSMMUG00000001118) #13 FGFR2 (ENSMMUG00000009594) #14 ENSMMUG00000059094 ATE1 (ENSMMUG00000021594) #15 NSMCE4A (ENSMMUG00000012044) #17 TACC2 (ENSMMUG00000013033) #18 BTBD16 (ENSMMUG00000013038) #19 PLEKHA1 (ENSMMUG00000013040) #20 HTRA1 (ENSMMUG00000056637) #21 ENSMMUG00000065343 #22 ENSMMUG00000021138 #22 SPADH (ENSMMUG00000052634) #23 C9H10orf120 (ENSMMUG00000021140) #24 CUZD1 (ENSMMUG00000010458) #27 FAM24A (ENSMMUG00000057705) #28 C9H10orf88 (ENSMMUG00000008564) #29 PSTK (ENSMMUG00000017858) IKZF5 (ENSMMUG00000023480) ACADSB (ENSMMUG00000000684) HMX3 (ENSMMUG00000003090) HMX2 (ENSMMUG00000053104) BUB3 (ENSMMUG00000003092) GPR26 (ENSMMUG00000053995) CPXM2 (ENSMMUG00000020346) ENSMMUG00000056443 Platyrrhini ANCESTRAL SPECIES 14 ENSGT00940000159204 #8 ENSGT00940000154259.k.a.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00650000095054 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00390000017384.h #29 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Mas night monkey MODERN SPECIES 802 PLPP4 (ENSANAG00000013394) #12 WDR11 (ENSANAG00000034731) #13 FGFR2 (ENSANAG00000030066) #14 ENSANAG00000017137 ATE1 (ENSANAG00000036713) #15 NSMCE4A (ENSANAG00000021849) #17 TACC2 (ENSANAG00000035884) #18 BTBD16 (ENSANAG00000028604) #19 PLEKHA1 (ENSANAG00000026667) #20 ARMS2 (ENSANAG00000024354) HTRA1 (ENSANAG00000023219) #21 ENSANAG00000030579 #22 C10orf120 (ENSANAG00000027570) #24 CUZD1 (ENSANAG00000021440) #27 FAM24B (ENSANAG00000020828) #28 ENSANAG00000018257 #29 FAM24A (ENSANAG00000014047) #28 C10orf88 (ENSANAG00000020459) #29 PSTK (ENSANAG00000037855) IKZF5 (ENSANAG00000032569) ACADSB (ENSANAG00000029052) HMX3 (ENSANAG00000024547) HMX2 (ENSANAG00000036077) BUB3 (ENSANAG00000034868) GPR26 (ENSANAG00000025234) CPXM2 (ENSANAG00000033303) CHST15 (ENSANAG00000036170) Cebidae ANCESTRAL SPECIES 17 ENSGT00500000044913.b ENSGT00940000159204 #8 ENSGT00940000154259.k.a.a ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Cebidae_a ANCESTRAL SPECIES 13 ENSGT00940000160482 #7 ENSGT00500000044913.b ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926.b #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000154525.b.a #27 ENSGT00940000163005.d #28 ENSGT00940000163005.c #28 ENSGT00390000017384.g #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895.w Bolivian squirrel monkey MODERN SPECIES 47 TIAL1 (ENSSBOG00000028408) #7 BAG3 (ENSSBOG00000033183) #8 INPP5F (ENSSBOG00000034456) #9 MCMBP (ENSSBOG00000029485) #10 SEC23IP (ENSSBOG00000028088) #11 ENSSBOG00000028957 PLPP4 (ENSSBOG00000027942) #12 WDR11 (ENSSBOG00000034391) #13 FGFR2 (ENSSBOG00000016345) #14 ATE1 (ENSSBOG00000033557) #15 NSMCE4A (ENSSBOG00000034475) #17 TACC2 (ENSSBOG00000034773) #18 BTBD16 (ENSSBOG00000030401) #19 PLEKHA1 (ENSSBOG00000032388) #20 HTRA1 (ENSSBOG00000022966) #21 ENSSBOG00000033598 #22 C10orf120 (ENSSBOG00000021674) #24 CUZD1 (ENSSBOG00000019778) #27 FAM24B (ENSSBOG00000034235) #28 FAM24A (ENSSBOG00000031885) #28 C10orf88 (ENSSBOG00000030071) #29 PSTK (ENSSBOG00000035695) IKZF5 (ENSSBOG00000021900) ACADSB (ENSSBOG00000026062) HMX3 (ENSSBOG00000023320) HMX2 (ENSSBOG00000021232) BUB3 (ENSSBOG00000025883) GPR26 (ENSSBOG00000029415) CPXM2 (ENSSBOG00000036010) CHST15 (ENSSBOG00000027985) OAT (ENSSBOG00000020910) Capuchin MODERN SPECIES 235 TMC4 (ENSCCAG00000004616) LENG1 (ENSCCAG00000032496) CNOT3 (ENSCCAG00000036290) ENSCCAG00000020552 TFPT (ENSCCAG00000028746) ENSCCAG00000035895 OSCAR (ENSCCAG00000032454) VSTM1 (ENSCCAG00000024468) CACNG6 (ENSCCAG00000036647) CACNG8 (ENSCCAG00000036186) CACNG7 (ENSCCAG00000033835) PRKCG (ENSCCAG00000024024) NLRP12 (ENSCCAG00000037077) ARMS2 (ENSCCAG00000038121) HTRA1 (ENSCCAG00000028776) #21 ENSCCAG00000033744 #22 C10orf120 (ENSCCAG00000020897) #24 CUZD1 (ENSCCAG00000010094) #27 FAM24B (ENSCCAG00000033608) #28 FAM24A (ENSCCAG00000034029) #28 C10orf88 (ENSCCAG00000029118) #29 PSTK (ENSCCAG00000027813) IKZF5 (ENSCCAG00000030805) ENSCCAG00000028196 ACADSB (ENSCCAG00000025590) HMX3 (ENSCCAG00000021254) HMX2 (ENSCCAG00000027587) BUB3 (ENSCCAG00000035243) GPR26 (ENSCCAG00000023527) CPXM2 (ENSCCAG00000029590) CHST15 (ENSCCAG00000023027) Marmoset DUPLICATION Marmoset MODERN SPECIES 3 ENSCJAG00000020378 BAG3 (ENSCJAG00000020374) #8 ENSCJAG00000087246 ENSCJAG00000013460 PLPP4 (ENSCJAG00000006402) #12 ENSCJAG00000071848 WDR11 (ENSCJAG00000006430) #13 ENSCJAG00000081690 ENSCJAG00000074755 FGFR2 (ENSCJAG00000001438) #14 ATE1 (ENSCJAG00000001411) #15 TACC2 (ENSCJAG00000001289) #18 BTBD16 (ENSCJAG00000001276) #19 ENSCJAG00000001251 #20 HTRA1 (ENSCJAG00000001226) #21 ENSCJAG00000082859 #22 ENSCJAG00000001157 #22 SPADH (ENSCJAG00000067245) #23 C10orf120 (ENSCJAG00000012735) #24 ENSCJAG00000061021 #25 CUZD1 (ENSCJAG00000001132) #27 FAM24B (ENSCJAG00000077353) #28 FAM24A (ENSCJAG00000086502) #28 C10orf88 (ENSCJAG00000001125) #29 PSTK (ENSCJAG00000001117) IKZF5 (ENSCJAG00000065257) ACADSB (ENSCJAG00000001092) HMX3 (ENSCJAG00000085658) HMX2 (ENSCJAG00000001081) BUB3 (ENSCJAG00000001066) GPR26 (ENSCJAG00000008190) Marmoset MODERN SPECIES 3 BAG3 (ENSCJAG00000020374) #8 ENSCJAG00000087246 ENSCJAG00000013460 PLPP4 (ENSCJAG00000006402) #12 ENSCJAG00000071848 WDR11 (ENSCJAG00000006430) #13 ENSCJAG00000081690 ENSCJAG00000074755 FGFR2 (ENSCJAG00000001438) #14 ATE1 (ENSCJAG00000001411) #15 TACC2 (ENSCJAG00000001289) #18 BTBD16 (ENSCJAG00000001276) #19 ENSCJAG00000001251 #20 HTRA1 (ENSCJAG00000001226) #21 ENSCJAG00000082859 #22 ENSCJAG00000001157 #22 SPADH (ENSCJAG00000067245) #23 C10orf120 (ENSCJAG00000012735) #24 ENSCJAG00000061021 #25 CUZD1 (ENSCJAG00000001132) #27 FAM24B (ENSCJAG00000077353) #28 FAM24A (ENSCJAG00000086502) #28 C10orf88 (ENSCJAG00000001125) #29 PSTK (ENSCJAG00000001117) IKZF5 (ENSCJAG00000065257) ACADSB (ENSCJAG00000001092) HMX3 (ENSCJAG00000085658) HMX2 (ENSCJAG00000001081) BUB3 (ENSCJAG00000001066) GPR26 (ENSCJAG00000008190) CPXM2 (ENSCJAG00000046273) Strepsirrhini ANCESTRAL SPECIES 11 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a Bushbaby MODERN SPECIES 136 BAG3 (ENSOGAG00000011421) #8 INPP5F (ENSOGAG00000009706) #9 MCMBP (ENSOGAG00000009714) #10 SEC23IP (ENSOGAG00000004948) #11 PLPP4 (ENSOGAG00000016998) #12 WDR11 (ENSOGAG00000012465) #13 FGFR2 (ENSOGAG00000012206) #14 ATE1 (ENSOGAG00000010023) #15 ENSOGAG00000031150 #16 NSMCE4A (ENSOGAG00000010026) #17 TACC2 (ENSOGAG00000010030) #18 BTBD16 (ENSOGAG00000010035) #19 ENSOGAG00000026108 ENSOGAG00000010036 #20 HTRA1 (ENSOGAG00000010043) #21 ENSOGAG00000033009 #22 Lemuriformes ANCESTRAL SPECIES 7 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00940000154525.b.a #27 ENSGT00390000017384.j #29 ENSGT00940000163005 #28 ENSGT00390000017384.i #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 Mouse lemur MODERN SPECIES 6 BAG3 (ENSMICG00000027251) #8 INPP5F (ENSMICG00000007525) #9 MCMBP (ENSMICG00000007540) #10 SEC23IP (ENSMICG00000007551) #11 ENSMICG00000037953 PLPP4 (ENSMICG00000008887) #12 WDR11 (ENSMICG00000008892) #13 FGFR2 (ENSMICG00000000424) #14 ATE1 (ENSMICG00000009823) #15 NSMCE4A (ENSMICG00000042455) #17 TACC2 (ENSMICG00000009830) #18 BTBD16 (ENSMICG00000009849) #19 PLEKHA1 (ENSMICG00000037532) #20 HTRA1 (ENSMICG00000009867) #21 ENSMICG00000037650 ENSMICG00000037150 #22 C10orf120 (ENSMICG00000008567) #24 CUZD1 (ENSMICG00000044009) #27 ENSMICG00000035025 #29 ENSMICG00000008610 #28 ENSMICG00000015190 #29 PSTK (ENSMICG00000005140) IKZF5 (ENSMICG00000043450) ACADSB (ENSMICG00000000462) HMX3 (ENSMICG00000000467) HMX2 (ENSMICG00000000468) BUB3 (ENSMICG00000000469) GPR26 (ENSMICG00000045590) CPXM2 (ENSMICG00000008842) CHST15 (ENSMICG00000008853) OAT (ENSMICG00000003894) Lemuriformes_a ANCESTRAL SPECIES 42 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384.i #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a Coquerels sifaka MODERN SPECIES 258 GRK5 (ENSPCOG00000022845) RGS10 (ENSPCOG00000020094) TIAL1 (ENSPCOG00000018990) #7 BAG3 (ENSPCOG00000027192) #8 INPP5F (ENSPCOG00000015152) #9 MCMBP (ENSPCOG00000020444) #10 PLPP4 (ENSPCOG00000025706) #12 WDR11 (ENSPCOG00000019354) #13 FGFR2 (ENSPCOG00000027873) #14 ATE1 (ENSPCOG00000026224) #15 NSMCE4A (ENSPCOG00000011420) #17 ENSPCOG00000026897 #18 BTBD16 (ENSPCOG00000020204) #19 PLEKHA1 (ENSPCOG00000027097) #20 HTRA1 (ENSPCOG00000021590) #21 ENSPCOG00000015298 #22 C10orf120 (ENSPCOG00000020092) #24 CUZD1 (ENSPCOG00000026175) #27 ENSPCOG00000008575 #28 ENSPCOG00000018262 #29 PSTK (ENSPCOG00000015070) IKZF5 (ENSPCOG00000024918) ACADSB (ENSPCOG00000017961) HMX3 (ENSPCOG00000004827) HMX2 (ENSPCOG00000021307) BUB3 (ENSPCOG00000024614) GPR26 (ENSPCOG00000019047) CPXM2 (ENSPCOG00000022596) CHST15 (ENSPCOG00000028486) OAT (ENSPCOG00000018744) NKX1-2 (ENSPCOG00000021546) Greater bamboo lemur DUPLICATION Greater bamboo lemur MODERN SPECIES 193 BAG3 (ENSPSMG00000010989) #8 INPP5F (ENSPSMG00000010892) #9 MCMBP (ENSPSMG00000010773) #10 SEC23IP (ENSPSMG00000010732) #11 PLPP4 (ENSPSMG00000010705) #12 WDR11 (ENSPSMG00000010687) #13 FGFR2 (ENSPSMG00000009785) #14 ATE1 (ENSPSMG00000009100) #15 ENSPSMG00000008956 #16 NSMCE4A (ENSPSMG00000008948) #17 ENSPSMG00000008933 #18 ENSPSMG00000008723 #18 BTBD16 (ENSPSMG00000008410) #19 PLEKHA1 (ENSPSMG00000008359) #20 HTRA1 (ENSPSMG00000008292) #21 ENSPSMG00000008270 #22 ENSPSMG00000008256 #22 SPADH (ENSPSMG00000008250) #23 C10orf120 (ENSPSMG00000008229) #24 ENSPSMG00000008209 ENSPSMG00000008149 #25 ENSPSMG00000008017 #25 ENSPSMG00000008008 #25 CUZD1 (ENSPSMG00000008002) #27 Greater bamboo lemur MODERN SPECIES 193 INPP5F (ENSPSMG00000010892) #9 MCMBP (ENSPSMG00000010773) #10 SEC23IP (ENSPSMG00000010732) #11 PLPP4 (ENSPSMG00000010705) #12 WDR11 (ENSPSMG00000010687) #13 FGFR2 (ENSPSMG00000009785) #14 ATE1 (ENSPSMG00000009100) #15 ENSPSMG00000008956 #16 NSMCE4A (ENSPSMG00000008948) #17 ENSPSMG00000008933 #18 ENSPSMG00000008723 #18 BTBD16 (ENSPSMG00000008410) #19 PLEKHA1 (ENSPSMG00000008359) #20 HTRA1 (ENSPSMG00000008292) #21 ENSPSMG00000008270 #22 ENSPSMG00000008256 #22 SPADH (ENSPSMG00000008250) #23 C10orf120 (ENSPSMG00000008229) #24 ENSPSMG00000008209 ENSPSMG00000008149 #25 ENSPSMG00000008017 #25 ENSPSMG00000008008 #25 CUZD1 (ENSPSMG00000008002) #27 Marsupialia ANCESTRAL SPECIES ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00940000157351.j ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00940000165188 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00950000183145.D ##22 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00950000182946.d.a Opossum DUPLICATION Opossum MODERN SPECIES PLPP4 (ENSMODG00000008644) #12 ENSMODG00000008634 ENSMODG00000039409 WDR11 (ENSMODG00000008627) #13 FGFR2 (ENSMODG00000008525) #14 ENSMODG00000008447 ENSMODG00000036472 ENSMODG00000044877 ATE1 (ENSMODG00000008434) #15 ENSMODG00000008405 ENSMODG00000008327 #18 ENSMODG00000038482 #18 BTBD16 (ENSMODG00000008285) #19 PLEKHA1 (ENSMODG00000008263) #20 HTRA1 (ENSMODG00000008235) #21 ENSMODG00000008170 #22 ENSMODG00000007900 #24 ENSMODG00000007895 #22 ENSMODG00000040843 ##22 CUZD1 (ENSMODG00000007863) #27 C10orf88 (ENSMODG00000007814) #29 PSTK (ENSMODG00000007808) IKZF5 (ENSMODG00000038834) ACADSB (ENSMODG00000007778) HMX3 (ENSMODG00000007552) HMX2 (ENSMODG00000007548) ENSMODG00000007542 GPR26 (ENSMODG00000007533) CPXM2 (ENSMODG00000007502) CHST15 (ENSMODG00000007407) ENSMODG00000038857 Opossum MODERN SPECIES ENSMODG00000039409 WDR11 (ENSMODG00000008627) #13 FGFR2 (ENSMODG00000008525) #14 ENSMODG00000008447 ENSMODG00000036472 ENSMODG00000044877 ATE1 (ENSMODG00000008434) #15 ENSMODG00000008405 ENSMODG00000008327 #18 ENSMODG00000038482 #18 BTBD16 (ENSMODG00000008285) #19 PLEKHA1 (ENSMODG00000008263) #20 HTRA1 (ENSMODG00000008235) #21 ENSMODG00000008170 #22 ENSMODG00000007900 #24 ENSMODG00000007895 #22 ENSMODG00000040843 ##22 CUZD1 (ENSMODG00000007863) #27 C10orf88 (ENSMODG00000007814) #29 PSTK (ENSMODG00000007808) IKZF5 (ENSMODG00000038834) ACADSB (ENSMODG00000007778) HMX3 (ENSMODG00000007552) HMX2 (ENSMODG00000007548) ENSMODG00000007542 GPR26 (ENSMODG00000007533) CPXM2 (ENSMODG00000007502) CHST15 (ENSMODG00000007407) ENSMODG00000038857 ENSMODG00000024882 ENSMODG00000007358 Marsupialia_b ANCESTRAL SPECIES ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00940000157351.j ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00950000183145.D ##22 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Tasmanian devil MODERN SPECIES 1 INPP5F (ENSSHAG00000010978) #9 MCMBP (ENSSHAG00000010768) #10 SEC23IP (ENSSHAG00000010548) #11 PLPP4 (ENSSHAG00000022918) #12 ENSSHAG00000013721 WDR11 (ENSSHAG00000012828) #13 FGFR2 (ENSSHAG00000006217) #14 ATE1 (ENSSHAG00000028389) #15 ENSSHAG00000013127 #16 ENSSHAG00000012962 #17 ENSSHAG00000009993 #18 ENSSHAG00000011665 #18 BTBD16 (ENSSHAG00000010960) #19 PLEKHA1 (ENSSHAG00000024626) #20 HTRA1 (ENSSHAG00000009284) #21 ENSSHAG00000007803 #22 ENSSHAG00000007217 #24 ENSSHAG00000022182 #25 ENSSHAG00000023839 ##22 ENSSHAG00000028811 #27 ENSSHAG00000011736 #27 C10orf88 (ENSSHAG00000024427) #29 ENSSHAG00000030670 IKZF5 (ENSSHAG00000011508) ACADSB (ENSSHAG00000000928) HMX3 (ENSSHAG00000031226) HMX2 (ENSSHAG00000029091) BUB3 (ENSSHAG00000010372) GPR26 (ENSSHAG00000030669) CPXM2 (ENSSHAG00000023947) ENSSHAG00000009520 Diprotodontia ANCESTRAL SPECIES 6 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00940000157351.j ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00950000183145.D ##22 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Diprotodontia_a ANCESTRAL SPECIES 7 ENSGT00940000159204.e #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00940000157351.j ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00950000183145.D ##22 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.f ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 koala MODERN SPECIES 367 ATE1 (ENSPCIG00000001110) #15 ENSPCIG00000001192 #16 ENSPCIG00000001203 #17 ENSPCIG00000001234 #18 ENSPCIG00000035481 #18 BTBD16 (ENSPCIG00000001286) #19 PLEKHA1 (ENSPCIG00000001321) #20 HTRA1 (ENSPCIG00000001326) #21 ENSPCIG00000007807 #22 Common wonbat MODERN SPECIES 1067 ENSVURG00010017263 #8 INPP5F (ENSVURG00010017282) #9 MCMBP (ENSVURG00010017481) #10 SEC23IP (ENSVURG00010017493) #11 PLPP4 (ENSVURG00010017515) #12 ENSVURG00010017529 WDR11 (ENSVURG00010017552) #13 FGFR2 (ENSVURG00010017618) #14 ATE1 (ENSVURG00010017712) #15 ENSVURG00010017748 #17 ENSVURG00010017780 #18 BTBD16 (ENSVURG00010018157) #19 ENSVURG00010018198 PLEKHA1 (ENSVURG00010018214) #20 HTRA1 (ENSVURG00010018270) #21 ENSVURG00010018555 #22 ENSVURG00010018628 #25 ENSVURG00010018656 ENSVURG00010018659 ##22 CUZD1 (ENSVURG00010018665) #27 C10orf88 (ENSVURG00010018674) #29 ENSVURG00010018686 IKZF5 (ENSVURG00010018688) ACADSB (ENSVURG00010018698) ENSVURG00010018711 GPR26 (ENSVURG00010018721) CPXM2 (ENSVURG00010018730) CHST15 (ENSVURG00010018756) ENSVURG00010018775 ENSVURG00010018780 ENSVURG00010018781 Platypus DUPLICATION Platypus MODERN SPECIES 7 UCHL5 (ENSOANG00000002960) RO60 (ENSOANG00000002961) ENSOANG00000002962 CDC73 (ENSOANG00000002964) B3GALT2 (ENSOANG00000002965) ENSOANG00000011956 KCNT2 (ENSOANG00000049291) ENSOANG00000001407 ENSOANG00000007875 ENSOANG00000049896 ENSOANG00000044965 ENSOANG00000007864 ENSOANG00000031768 #19 PLEKHA1 (ENSOANG00000007865) #20 HTRA1 (ENSOANG00000045001) #21 ENSOANG00000002000 #22 ENSOANG00000049858 ##22 ENSOANG00000045064 #22 ENSOANG00000020984 ##22 ENSOANG00000047128 #25 CUZD1 (ENSOANG00000001997) #27 ENSOANG00000043341 #29 PSTK (ENSOANG00000001995) IKZF5 (ENSOANG00000001994) ACADSB (ENSOANG00000013324) HMX3 (ENSOANG00000037629) HMX2 (ENSOANG00000036447) BUB3 (ENSOANG00000041516) CPXM2 (ENSOANG00000038396) ENSOANG00000030444 #18 ENSOANG00000002087 #17 Platypus MODERN SPECIES 7 ENSOANG00000002962 CDC73 (ENSOANG00000002964) B3GALT2 (ENSOANG00000002965) ENSOANG00000011956 KCNT2 (ENSOANG00000049291) ENSOANG00000001407 ENSOANG00000007875 ENSOANG00000049896 ENSOANG00000044965 ENSOANG00000007864 ENSOANG00000031768 #19 PLEKHA1 (ENSOANG00000007865) #20 HTRA1 (ENSOANG00000045001) #21 ENSOANG00000002000 #22 ENSOANG00000049858 ##22 ENSOANG00000045064 #22 ENSOANG00000020984 ##22 ENSOANG00000047128 #25 CUZD1 (ENSOANG00000001997) #27 ENSOANG00000043341 #29 PSTK (ENSOANG00000001995) IKZF5 (ENSOANG00000001994) ACADSB (ENSOANG00000013324) HMX3 (ENSOANG00000037629) HMX2 (ENSOANG00000036447) BUB3 (ENSOANG00000041516) CPXM2 (ENSOANG00000038396) ENSOANG00000030444 #18 ENSOANG00000002087 #17 ATE1 (ENSOANG00000047065) #15 FGFR2 (ENSOANG00000029096) #14 Sauria ANCESTRAL SPECIES 8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT01030000235500 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Lepidosauria ANCESTRAL SPECIES 8 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 ENSGT00940000159002 Episquamata ANCESTRAL SPECIES 2 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 ENSGT00940000159002 Laterata ANCESTRAL SPECIES 213 ENSGT01030000235500 ENSGT00950000183145.E #22 Common wall lizard DUPLICATION Common wall lizard DUPLICATION Common wall lizard MODERN SPECIES 13 PLPP4 (ENSPMRG00000006469) #12 WDR11 (ENSPMRG00000006420) #13 FGFR2 (ENSPMRG00000006399) #14 ATE1 (ENSPMRG00000006382) #15 ENSPMRG00000006364 #17 TACC2 (ENSPMRG00000006314) #18 BTBD16 (ENSPMRG00000006301) #19 PLEKHA1 (ENSPMRG00000006289) #20 HTRA1 (ENSPMRG00000006287) #21 ENSPMRG00000006279 ENSPMRG00000006276 ENSPMRG00000006275 ENSPMRG00000006269 ENSPMRG00000006230 #22 ENSPMRG00000006207 #22 ENSPMRG00000006189 #22 ENSPMRG00000006176 ##22 CUZD1 (ENSPMRG00000006167) #27 C10orf88 (ENSPMRG00000006156) #29 ENSPMRG00000006144 PSTK (ENSPMRG00000006125) IKZF5 (ENSPMRG00000006110) ACADSB (ENSPMRG00000006103) ENSPMRG00000006097 HMX3 (ENSPMRG00000006089) HMX2 (ENSPMRG00000006086) BUB3 (ENSPMRG00000006076) GPR26 (ENSPMRG00000006065) CPXM2 (ENSPMRG00000006029) CHST15 (ENSPMRG00000006004) OAT (ENSPMRG00000005967) Common wall lizard MODERN SPECIES 13 SEC23IP (ENSPMRG00000006499) #11 ENSPMRG00000006493 PLPP4 (ENSPMRG00000006469) #12 WDR11 (ENSPMRG00000006420) #13 FGFR2 (ENSPMRG00000006399) #14 ATE1 (ENSPMRG00000006382) #15 ENSPMRG00000006364 #17 TACC2 (ENSPMRG00000006314) #18 BTBD16 (ENSPMRG00000006301) #19 PLEKHA1 (ENSPMRG00000006289) #20 HTRA1 (ENSPMRG00000006287) #21 ENSPMRG00000006279 ENSPMRG00000006276 ENSPMRG00000006275 ENSPMRG00000006269 ENSPMRG00000006230 #22 ENSPMRG00000006207 #22 ENSPMRG00000006189 #22 ENSPMRG00000006176 ##22 CUZD1 (ENSPMRG00000006167) #27 C10orf88 (ENSPMRG00000006156) #29 ENSPMRG00000006144 PSTK (ENSPMRG00000006125) IKZF5 (ENSPMRG00000006110) ACADSB (ENSPMRG00000006103) ENSPMRG00000006097 HMX3 (ENSPMRG00000006089) HMX2 (ENSPMRG00000006086) BUB3 (ENSPMRG00000006076) GPR26 (ENSPMRG00000006065) CPXM2 (ENSPMRG00000006029) Common wall lizard MODERN SPECIES 13 ENSPMRG00000006493 PLPP4 (ENSPMRG00000006469) #12 WDR11 (ENSPMRG00000006420) #13 FGFR2 (ENSPMRG00000006399) #14 ATE1 (ENSPMRG00000006382) #15 ENSPMRG00000006364 #17 TACC2 (ENSPMRG00000006314) #18 BTBD16 (ENSPMRG00000006301) #19 PLEKHA1 (ENSPMRG00000006289) #20 HTRA1 (ENSPMRG00000006287) #21 ENSPMRG00000006279 ENSPMRG00000006276 ENSPMRG00000006275 ENSPMRG00000006269 ENSPMRG00000006230 #22 ENSPMRG00000006207 #22 ENSPMRG00000006189 #22 ENSPMRG00000006176 ##22 CUZD1 (ENSPMRG00000006167) #27 C10orf88 (ENSPMRG00000006156) #29 ENSPMRG00000006144 PSTK (ENSPMRG00000006125) IKZF5 (ENSPMRG00000006110) ACADSB (ENSPMRG00000006103) ENSPMRG00000006097 HMX3 (ENSPMRG00000006089) HMX2 (ENSPMRG00000006086) BUB3 (ENSPMRG00000006076) GPR26 (ENSPMRG00000006065) CPXM2 (ENSPMRG00000006029) CHST15 (ENSPMRG00000006004) Toxicofera ANCESTRAL SPECIES 2 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 ENSGT00940000159002 Lizard MODERN SPECIES 2 WDR11 (ENSACAG00000017159) #13 ENSACAG00000035820 ENSACAG00000037188 FGFR2 (ENSACAG00000017206) #14 ENSACAG00000039358 ATE1 (ENSACAG00000017242) #15 NSMCE4A (ENSACAG00000017278) #17 ENSACAG00000017293 #18 ENSACAG00000018553 BTBD16 (ENSACAG00000029070) #19 PLEKHA1 (ENSACAG00000043979) #20 ENSACAG00000034636 HTRA1 (ENSACAG00000041971) #21 ENSACAG00000037899 ENSACAG00000045427 ENSACAG00000017425 #22 ENSACAG00000038201 ADAM12 (ENSACAG00000000456) FANK1 (ENSACAG00000000847) BCCIP (ENSACAG00000000886) UROS (ENSACAG00000000920) EDRF1 (ENSACAG00000000994) TEX36 (ENSACAG00000001232) CTBP2 (ENSACAG00000014547) ZRANB1 (ENSACAG00000014485) ABRAXAS2 (ENSACAG00000014423) eef1akmt2 (ENSACAG00000038120) FAM53B (ENSACAG00000014398) ENSACAG00000044309 ENSACAG00000043228 LHPP (ENSACAG00000017564) Elapidae ANCESTRAL SPECIES 4 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a.b ENSGT00950000183001.a.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Indian cobra MODERN SPECIES 3 INPP5F (ENSNNAG00000005737) #9 MCMBP (ENSNNAG00000005668) #10 SEC23IP (ENSNNAG00000005588) #11 PLPP4 (ENSNNAG00000005540) #12 WDR11 (ENSNNAG00000005498) #13 FGFR2 (ENSNNAG00000005354) #14 ATE1 (ENSNNAG00000005291) #15 ENSNNAG00000005253 TACC2 (ENSNNAG00000004956) #18 BTBD16 (ENSNNAG00000004840) #19 PLEKHA1 (ENSNNAG00000004758) #20 HTRA1 (ENSNNAG00000004719) #21 ENSNNAG00000004693 ##22 ENSNNAG00000004671 ##22 ENSNNAG00000004649 ENSNNAG00000004527 #22 ENSNNAG00000004497 ##22 ENSNNAG00000003976 ##22 ENSNNAG00000003929 C10orf88 (ENSNNAG00000003898) #29 ENSNNAG00000003842 PSTK (ENSNNAG00000003820) IKZF5 (ENSNNAG00000003799) ACADSB (ENSNNAG00000003781) HMX3 (ENSNNAG00000003758) HMX2 (ENSNNAG00000003744) BUB3 (ENSNNAG00000003731) ENSNNAG00000003714 ENSNNAG00000003699 ENSNNAG00000003675 CPXM2 (ENSNNAG00000003642) Elapidae_a ANCESTRAL SPECIES ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00940000154525.b.a #27 ENSGT01030000236508 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 ENSGT00940000159002 ENSGT00530000063371.B Blue-lipped sea krait MODERN SPECIES 5981 HTRA1 (ENSLLTG00000005375) #21 ENSLLTG00000005393 ##22 ENSLLTG00000005419 ##22 ENSLLTG00000005541 #22 Acanthophiinae ANCESTRAL SPECIES 1 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00940000154525.b.a #27 ENSGT01030000236508 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 ENSGT00940000159002 ENSGT00530000063371.B Mainland tiger snake MODERN SPECIES ENSNSUG00000001093 PLPP4 (ENSNSUG00000001090) #12 ENSNSUG00000001085 WDR11 (ENSNSUG00000001076) #13 FGFR2 (ENSNSUG00000001069) #14 ATE1 (ENSNSUG00000001059) #15 NSMCE4A (ENSNSUG00000001055) #17 ENSNSUG00000001053 ENSNSUG00000001027 #18 BTBD16 (ENSNSUG00000000997) #19 PLEKHA1 (ENSNSUG00000000993) #20 HTRA1 (ENSNSUG00000000969) #21 ENSNSUG00000000967 ##22 ENSNSUG00000000962 #27 ENSNSUG00000000957 ENSNSUG00000000956 #22 ENSNSUG00000000933 C10orf88 (ENSNSUG00000000899) #29 PSTK (ENSNSUG00000000895) IKZF5 (ENSNSUG00000000891) ACADSB (ENSNSUG00000000887) HMX3 (ENSNSUG00000000884) HMX2 (ENSNSUG00000000883) BUB3 (ENSNSUG00000000878) GPR26 (ENSNSUG00000000874) CPXM2 (ENSNSUG00000000866) CHST15 (ENSNSUG00000000864) OAT (ENSNSUG00000000859) LHPP (ENSNSUG00000000857) FAM53B (ENSNSUG00000000856) EEF1AKMT2 (ENSNSUG00000000854) Archelosauria ANCESTRAL SPECIES 10 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT01030000235500 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Cryptodira ANCESTRAL SPECIES 6 ENSGT00940000160482 #7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 ENSGT00940000159002 Chinese turtle DUPLICATION Chinese turtle MODERN SPECIES 154 ENSPSIG00000013652 ENSPSIG00000013690 BAG3 (ENSPSIG00000015275) #8 SEC23IP (ENSPSIG00000016139) #11 INPP5F (ENSPSIG00000016807) #9 MCMBP (ENSPSIG00000006179) #10 ENSPSIG00000000417 PLPP4 (ENSPSIG00000007283) #12 WDR11 (ENSPSIG00000007623) #13 FGFR2 (ENSPSIG00000007758) #14 ATE1 (ENSPSIG00000009429) #15 NSMCE4A (ENSPSIG00000010064) #17 TACC2 (ENSPSIG00000010319) #18 PLEKHA1 (ENSPSIG00000010906) #20 HTRA1 (ENSPSIG00000010931) #21 ENSPSIG00000011540 #22 ENSPSIG00000012134 Chinese turtle MODERN SPECIES 153 ENSPSIG00000004485 #22 GSTK1 (ENSPSIG00000005021) RAP1GAP (ENSPSIG00000005295) ENSPSIG00000005455 Testudinoidea ANCESTRAL SPECIES 2 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT01030000235500.a ENSGT00940000163882.d ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Testudinidae ANCESTRAL SPECIES 9 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT01030000235500.a ENSGT00940000163882.d ENSGT00950000183145.A.a.c ##22 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Abingdon island giant tortoise DUPLICATION Abingdon island giant tortoise MODERN SPECIES 2172 ENSCABG00000002257 #22 ENSCABG00000002272 ENSCABG00000002275 ENSCABG00000002280 ENSCABG00000002281 GABARAPL1 (ENSCABG00000002282) ENSCABG00000002283 ENSCABG00000002284 ENSCABG00000002285 ENSCABG00000002287 ENSCABG00000002288 ENSCABG00000002289 ENSCABG00000002290 ENSCABG00000002292 Abingdon island giant tortoise MODERN SPECIES 772 ENSCABG00000012109 ENSCABG00000012112 #22 ENSCABG00000012117 Goode s thornscrub tortoise DUPLICATION Goode s thornscrub tortoise DUPLICATION Goode s thornscrub tortoise MODERN SPECIES 21 BAG3 (ENSGEVG00005019883) #8 INPP5F (ENSGEVG00005019898) #9 MCMBP (ENSGEVG00005019925) #10 SEC23IP (ENSGEVG00005019936) #11 PLPP4 (ENSGEVG00005019965) #12 WDR11 (ENSGEVG00005019974) #13 ENSGEVG00005019994 ENSGEVG00005020010 #14 ENSGEVG00005020017 #14 ATE1 (ENSGEVG00005020042) #15 NSMCE4A (ENSGEVG00005020083) #17 ENSGEVG00005020092 #18 BTBD16 (ENSGEVG00005020101) #19 PLEKHA1 (ENSGEVG00005009217) #20 HTRA1 (ENSGEVG00005009396) #21 ENSGEVG00005009567 #22 ENSGEVG00005009616 #22 ENSGEVG00005009786 ENSGEVG00005009832 ENSGEVG00005009897 ##22 C10orf88 (ENSGEVG00005009973) #29 ENSGEVG00005009999 PSTK (ENSGEVG00005010124) IKZF5 (ENSGEVG00005010148) ACADSB (ENSGEVG00005010261) HMX3 (ENSGEVG00005011045) HMX2 (ENSGEVG00005011080) BUB3 (ENSGEVG00005011128) GPR26 (ENSGEVG00005011147) CPXM2 (ENSGEVG00005011196) CHST15 (ENSGEVG00005011451) Goode s thornscrub tortoise MODERN SPECIES 21 INPP5F (ENSGEVG00005019898) #9 MCMBP (ENSGEVG00005019925) #10 SEC23IP (ENSGEVG00005019936) #11 PLPP4 (ENSGEVG00005019965) #12 WDR11 (ENSGEVG00005019974) #13 ENSGEVG00005019994 ENSGEVG00005020010 #14 ENSGEVG00005020017 #14 ATE1 (ENSGEVG00005020042) #15 NSMCE4A (ENSGEVG00005020083) #17 ENSGEVG00005020092 #18 BTBD16 (ENSGEVG00005020101) #19 PLEKHA1 (ENSGEVG00005009217) #20 HTRA1 (ENSGEVG00005009396) #21 ENSGEVG00005009567 #22 ENSGEVG00005009616 #22 ENSGEVG00005009786 ENSGEVG00005009832 ENSGEVG00005009897 ##22 C10orf88 (ENSGEVG00005009973) #29 ENSGEVG00005009999 PSTK (ENSGEVG00005010124) IKZF5 (ENSGEVG00005010148) ACADSB (ENSGEVG00005010261) HMX3 (ENSGEVG00005011045) HMX2 (ENSGEVG00005011080) BUB3 (ENSGEVG00005011128) GPR26 (ENSGEVG00005011147) CPXM2 (ENSGEVG00005011196) CHST15 (ENSGEVG00005011451) OAT (ENSGEVG00005011512) Goode s thornscrub tortoise MODERN SPECIES 19 ENSGEVG00005019583 ENSGEVG00005019578 ENSGEVG00005019433 #22 ENSGEVG00005019310 ENSGEVG00005019141 ENSGEVG00005019067 ENSGEVG00005019057 ENSGEVG00005019044 DUSP4 (ENSGEVG00005019023) TNKS (ENSGEVG00005017485) PPP1R3B (ENSGEVG00005017094) ERI1 (ENSGEVG00005017077) MFHAS1 (ENSGEVG00005017057) ENSGEVG00005017033 ENSGEVG00005016993 HOPX (ENSGEVG00005016964) ENSGEVG00005016930 ENSGEVG00005016891 Emydidae ANCESTRAL SPECIES 6 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT01030000235500.a ENSGT00940000163882.d ENSGT00950000183145.A.a ##22 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 painted turtle MODERN SPECIES 15 ENSCPBG00000002230 ENSCPBG00000002224 PRLHR (ENSCPBG00000002209) CACUL1 (ENSCPBG00000002191) NANOS1 (ENSCPBG00000002172) EIF3A (ENSCPBG00000001266) ENSCPBG00000001216 SFXN4 (ENSCPBG00000001202) PRDX3 (ENSCPBG00000001195) GRK5 (ENSCPBG00000001153) RGS10 (ENSCPBG00000001134) TIAL1 (ENSCPBG00000001103) #7 BAG3 (ENSCPBG00000001092) #8 PLEKHA1 (ENSCPBG00000001016) #20 HTRA1 (ENSCPBG00000000966) #21 ENSCPBG00000000282 #22 ENSCPBG00000000175 ENSCPBG00000000160 ENSCPBG00000000152 ##22 C10orf88 (ENSCPBG00000000128) #29 ENSCPBG00000000116 IKZF5 (ENSCPBG00000028099) ACADSB (ENSCPBG00000028097) HMX3 (ENSCPBG00000028093) HMX2 (ENSCPBG00000028090) BUB3 (ENSCPBG00000028089) GPR26 (ENSCPBG00000028085) CPXM2 (ENSCPBG00000028082) CHST15 (ENSCPBG00000028078) OAT (ENSCPBG00000028074) NKX1-2 (ENSCPBG00000028073) Three-toed box turtle DUPLICATION Three-toed box turtle MODERN SPECIES 1865 ENSTMTG00000019276 #22 Three-toed box turtle MODERN SPECIES 38 ENSTMTG00000006758 ENSTMTG00000006639 #25 ENSTMTG00000006539 #22 ENSTMTG00000006521 TDRD7 (ENSTMTG00000006491) TSTD2 (ENSTMTG00000006470) NCBP1 (ENSTMTG00000006425) XPA (ENSTMTG00000006408) FOXE1 (ENSTMTG00000006395) ENSTMTG00000006376 B4GALT1 (ENSTMTG00000006358) SMU1 (ENSTMTG00000006333) DNAJA1 (ENSTMTG00000006313) APTX (ENSTMTG00000006285) ACTL7A (ENSTMTG00000006275) ELP1 (ENSTMTG00000003442) TBC1D2 (ENSTMTG00000003167) CORO2A (ENSTMTG00000003152) Archosauria ANCESTRAL SPECIES 7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000163882 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Aves ANCESTRAL SPECIES 6 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000163882.e.a ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b.a ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Neognathae ANCESTRAL SPECIES 7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000163882.e.a ENSGT00950000183145.A.b.a ##22 ENSGT00940000154525.b.a #27 ENSGT00940000163882.f ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Neognathae_b ANCESTRAL SPECIES 8 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000163882.e.a ENSGT00940000154525.b.a #27 ENSGT00940000163882.f ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Neognathae_c ANCESTRAL SPECIES 8 ENSGT00940000160482 #7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT01030000235500 ENSGT00950000183145.E #22 ENSGT00940000163882.e.a ENSGT00940000154525.b.a #27 ENSGT00940000163882.f ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Kakapo DUPLICATION Kakapo DUPLICATION Kakapo DUPLICATION Kakapo MODERN SPECIES 21 RAB15 (ENSSHBG00005018227) GPX2 (ENSSHBG00005018223) CHURC1 (ENSSHBG00005018217) SPTB (ENSSHBG00005008745) ENSSHBG00005008435 NUP160 (ENSSHBG00005008355) FNBP4 (ENSSHBG00005008293) AGBL2 (ENSSHBG00005008277) MTCH2 (ENSSHBG00005008267) NUDT8 (ENSSHBG00005008258) NDUFV1 (ENSSHBG00005008244) ENSSHBG00005008227 CDK2AP2 (ENSSHBG00005008218) PITPNM1 (ENSSHBG00005008196) AIP (ENSSHBG00005000129) ENSSHBG00005004143 #22 ENSSHBG00005004121 #22 ENSSHBG00005004112 #22 ENSSHBG00005004098 ENSSHBG00005004084 ENSSHBG00005004065 TALDO1 (ENSSHBG00005004056) EPS8L2 (ENSSHBG00005003789) TMEM80 (ENSSHBG00005003689) DEAF1 (ENSSHBG00005003577) DRD4 (ENSSHBG00005003546) ENSSHBG00005003536 BUB1B (ENSSHBG00005003488) PAK6 (ENSSHBG00005003451) PLCB2 (ENSSHBG00005003115) DISP2 (ENSSHBG00005002967) Kakapo MODERN SPECIES 21 GPX2 (ENSSHBG00005018223) CHURC1 (ENSSHBG00005018217) SPTB (ENSSHBG00005008745) ENSSHBG00005008435 NUP160 (ENSSHBG00005008355) FNBP4 (ENSSHBG00005008293) AGBL2 (ENSSHBG00005008277) MTCH2 (ENSSHBG00005008267) NUDT8 (ENSSHBG00005008258) NDUFV1 (ENSSHBG00005008244) ENSSHBG00005008227 CDK2AP2 (ENSSHBG00005008218) PITPNM1 (ENSSHBG00005008196) AIP (ENSSHBG00005000129) ENSSHBG00005004143 #22 ENSSHBG00005004121 #22 ENSSHBG00005004112 #22 ENSSHBG00005004098 ENSSHBG00005004084 ENSSHBG00005004065 TALDO1 (ENSSHBG00005004056) EPS8L2 (ENSSHBG00005003789) TMEM80 (ENSSHBG00005003689) DEAF1 (ENSSHBG00005003577) DRD4 (ENSSHBG00005003546) ENSSHBG00005003536 BUB1B (ENSSHBG00005003488) PAK6 (ENSSHBG00005003451) PLCB2 (ENSSHBG00005003115) DISP2 (ENSSHBG00005002967) ENSSHBG00005002949 Kakapo MODERN SPECIES 21 CHURC1 (ENSSHBG00005018217) SPTB (ENSSHBG00005008745) ENSSHBG00005008435 NUP160 (ENSSHBG00005008355) FNBP4 (ENSSHBG00005008293) AGBL2 (ENSSHBG00005008277) MTCH2 (ENSSHBG00005008267) NUDT8 (ENSSHBG00005008258) NDUFV1 (ENSSHBG00005008244) ENSSHBG00005008227 CDK2AP2 (ENSSHBG00005008218) PITPNM1 (ENSSHBG00005008196) AIP (ENSSHBG00005000129) ENSSHBG00005004143 #22 ENSSHBG00005004121 #22 ENSSHBG00005004112 #22 ENSSHBG00005004098 ENSSHBG00005004084 ENSSHBG00005004065 TALDO1 (ENSSHBG00005004056) EPS8L2 (ENSSHBG00005003789) TMEM80 (ENSSHBG00005003689) DEAF1 (ENSSHBG00005003577) DRD4 (ENSSHBG00005003546) ENSSHBG00005003536 BUB1B (ENSSHBG00005003488) PAK6 (ENSSHBG00005003451) PLCB2 (ENSSHBG00005003115) DISP2 (ENSSHBG00005002967) ENSSHBG00005002949 IVD (ENSSHBG00005002925) Kakapo MODERN SPECIES 22 ENSSHBG00005003012 ENSSHBG00005003028 BAG3 (ENSSHBG00005003039) #8 INPP5F (ENSSHBG00005003229) #9 MCMBP (ENSSHBG00005003485) #10 SEC23IP (ENSSHBG00005003520) #11 PLPP4 (ENSSHBG00005003537) #12 WDR11 (ENSSHBG00005003553) #13 FGFR2 (ENSSHBG00005003568) #14 ATE1 (ENSSHBG00005003603) #15 NSMCE4A (ENSSHBG00005003627) #17 TACC2 (ENSSHBG00005003706) #18 PLEKHA1 (ENSSHBG00005004075) #20 HTRA1 (ENSSHBG00005004092) #21 ENSSHBG00005004131 ENSSHBG00005004148 #22 ENSSHBG00005004175 C10orf88 (ENSSHBG00005004187) #29 ENSSHBG00005004196 PSTK (ENSSHBG00005004212) IKZF5 (ENSSHBG00005004221) ACADSB (ENSSHBG00005004229) HMX3 (ENSSHBG00005004243) HMX2 (ENSSHBG00005004253) BUB3 (ENSSHBG00005004261) GPR26 (ENSSHBG00005004264) CPXM2 (ENSSHBG00005004275) CHST15 (ENSSHBG00005004287) OAT (ENSSHBG00005004295) NKX1-2 (ENSSHBG00005004300) LHPP (ENSSHBG00005004303) Golden eagle DUPLICATION Golden eagle MODERN SPECIES 7 ENSACCG00020015124 CABP4 (ENSACCG00020015141) OSBP (ENSACCG00020015162) PATL1 (ENSACCG00020015185) STX3 (ENSACCG00020011485) MRPL16 (ENSACCG00020011506) CBLIF (ENSACCG00020011523) ENSACCG00020011543 MS4A12 (ENSACCG00020011563) ENSACCG00020011582 BAAT (ENSACCG00020011602) ZP1 (ENSACCG00020011636) PRPF19 (ENSACCG00020011674) TMEM132A (ENSACCG00020011751) SLC15A3 (ENSACCG00020011816) ENSACCG00020011851 #22 ENSACCG00020011928 VPS37C (ENSACCG00020011971) ENSACCG00020012108 ENSACCG00020012172 DDB1 (ENSACCG00020012215) TKFC (ENSACCG00020012290) CYB561A3 (ENSACCG00020012432) TMEM138 (ENSACCG00020012452) TMEM216 (ENSACCG00020012474) ENSACCG00020012497 SDHAF2 (ENSACCG00020012511) LRRC10B (ENSACCG00020012541) SYT7 (ENSACCG00020012563) DAGLA (ENSACCG00020012603) MYRF (ENSACCG00020012724) Golden eagle MODERN SPECIES 2 BAG3 (ENSACCG00020007545) #8 INPP5F (ENSACCG00020007437) #9 MCMBP (ENSACCG00020007244) #10 SEC23IP (ENSACCG00020007215) #11 PLPP4 (ENSACCG00020007199) #12 WDR11 (ENSACCG00020007177) #13 FGFR2 (ENSACCG00020007148) #14 ATE1 (ENSACCG00020007114) #15 NSMCE4A (ENSACCG00020007065) #17 ENSACCG00020006968 PLEKHA1 (ENSACCG00020006872) #20 ENSACCG00020006849 HTRA1 (ENSACCG00020006834) #21 ENSACCG00020006816 ENSACCG00020006805 #27 ENSACCG00020006746 #22 ENSACCG00020006663 C10orf88 (ENSACCG00020006628) #29 ENSACCG00020006582 PSTK (ENSACCG00020006551) IKZF5 (ENSACCG00020006532) ACADSB (ENSACCG00020006524) HMX3 (ENSACCG00020006513) HMX2 (ENSACCG00020006506) BUB3 (ENSACCG00020006497) GPR26 (ENSACCG00020006486) CPXM2 (ENSACCG00020006462) CHST15 (ENSACCG00020006444) OAT (ENSACCG00020006431) NKX1-2 (ENSACCG00020006421) LHPP (ENSACCG00020006411) Passeriformes ANCESTRAL SPECIES 10 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000154525.b.a #27 ENSGT00940000163882.f ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Passeriformes_d ANCESTRAL SPECIES 7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000154525.b.a #27 ENSGT00940000163882.f ENSGT00940000163882.e.a ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Passeriformes_g ANCESTRAL SPECIES 194 ENSGT00950000183145.E #22 ENSGT01030000235500 Passeroidea ANCESTRAL SPECIES 201 ENSGT00950000183145.E #22 ENSGT01030000235500 Common canary MODERN SPECIES 7 BAG3 (ENSSCAG00000014200) #8 INPP5F (ENSSCAG00000014059) #9 MCMBP (ENSSCAG00000014009) #10 SEC23IP (ENSSCAG00000013890) #11 PLPP4 (ENSSCAG00000013843) #12 WDR11 (ENSSCAG00000013823) #13 ENSSCAG00000013814 FGFR2 (ENSSCAG00000013802) #14 ATE1 (ENSSCAG00000013795) #15 NSMCE4A (ENSSCAG00000013790) #17 TACC2 (ENSSCAG00000013757) #18 PLEKHA1 (ENSSCAG00000013721) #20 HTRA1 (ENSSCAG00000013709) #21 ENSSCAG00000013688 ENSSCAG00000013676 ENSSCAG00000013649 #22 ENSSCAG00000013633 #27 ENSSCAG00000013608 ENSSCAG00000013599 #29 ENSSCAG00000013593 PSTK (ENSSCAG00000013588) IKZF5 (ENSSCAG00000013584) ACADSB (ENSSCAG00000013578) BUB3 (ENSSCAG00000013570) GPR26 (ENSSCAG00000013565) CPXM2 (ENSSCAG00000013552) CHST15 (ENSSCAG00000013544) ENSSCAG00000013531 OAT (ENSSCAG00000013523) LHPP (ENSSCAG00000013513) EEF1AKMT2 (ENSSCAG00000013502) Flycatcher DUPLICATION Flycatcher MODERN SPECIES 304 ENSFALG00000009021 ENSFALG00000022979 ENSFALG00000014367 ENSFALG00000028677 ENSFALG00000027062 ENSFALG00000009035 #22 ENSFALG00000024248 Flycatcher MODERN SPECIES 9 COL26A1 (ENSFALG00000009371) ENSFALG00000009375 ENSFALG00000009380 CUX1 (ENSFALG00000009409) SH2B2 (ENSFALG00000009471) PRKRIP1 (ENSFALG00000026614) ORAI2 (ENSFALG00000025629) ALKBH4 (ENSFALG00000028280) LRWD1 (ENSFALG00000009512) ENSFALG00000009523 ENSFALG00000009533 ENSFALG00000009540 ENSFALG00000027894 DTX2 (ENSFALG00000009561) ENSFALG00000009575 ##22 ENSFALG00000028705 #22 YWHAG (ENSFALG00000026928) HSPB1 (ENSFALG00000009587) ENSFALG00000026877 SRRM3 (ENSFALG00000009603) MDH2 (ENSFALG00000009620) TMEM120A (ENSFALG00000009669) POR (ENSFALG00000009688) ENSFALG00000009693 ENSFALG00000009696 MMP28 (ENSFALG00000009701) ENSFALG00000027238 RASL10B (ENSFALG00000027159) AP2B1 (ENSFALG00000009715) PEX12 (ENSFALG00000009719) UNC45B (ENSFALG00000009721) Flycatcher MODERN SPECIES 25 ENSFALG00000002173 BAG3 (ENSFALG00000002165) #8 ENSFALG00000024667 INPP5F (ENSFALG00000002164) #9 MCMBP (ENSFALG00000002162) #10 SEC23IP (ENSFALG00000002159) #11 PLPP4 (ENSFALG00000026547) #12 ENSFALG00000024601 WDR11 (ENSFALG00000002154) #13 FGFR2 (ENSFALG00000002152) #14 ATE1 (ENSFALG00000002151) #15 NSMCE4A (ENSFALG00000002150) #17 TACC2 (ENSFALG00000002148) #18 PLEKHA1 (ENSFALG00000002147) #20 HTRA1 (ENSFALG00000028171) #21 ENSFALG00000002135 #22 ENSFALG00000025833 ENSFALG00000004924 ##22 ENSFALG00000023413 ENSFALG00000004913 #27 C10orf88 (ENSFALG00000028462) #29 ENSFALG00000004871 IKZF5 (ENSFALG00000004728) ACADSB (ENSFALG00000024790) HMX3 (ENSFALG00000026829) BUB3 (ENSFALG00000004735) ENSFALG00000028168 GPR26 (ENSFALG00000004740) CPXM2 (ENSFALG00000004744) CHST15 (ENSFALG00000004749) ENSFALG00000004758 Galloanserae ANCESTRAL SPECIES 6 ENSGT00940000160482 #7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00940000163882.e.a ENSGT00950000183145.C.b ##22 ENSGT00940000154525.b.a.c.b #27 ENSGT00940000163882.f ENSGT00940000154525.b.a.d #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Anatidae ANCESTRAL SPECIES ENSGT00950000183145.E #22 Duck MODERN SPECIES 2809 ENSAPLG00000025404 #22 Phasianidae ANCESTRAL SPECIES 6 ENSGT00940000160702.b ENSGT00940000161426 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00940000163882.e.a ENSGT00950000183145.C.b ##22 ENSGT00940000163882.f ENSGT00950000183145.A.b.a ##22 ENSGT00940000154525.b.a.d #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Phasianidae_b ANCESTRAL SPECIES 6 ENSGT00940000160702.b ENSGT00940000161426 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00940000163882.e.a ENSGT00950000183145.A.b.a ##22 ENSGT00940000154525.b.a.d #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Chicken DUPLICATION Chicken MODERN SPECIES 35 GRK5 (ENSGALG00010002251) RGS10 (ENSGALG00010002277) TIAL1 (ENSGALG00010002361) BAG3 (ENSGALG00010002371) #8 INPP5F (ENSGALG00010002383) #9 MCMBP (ENSGALG00010002387) #10 SEC23IP (ENSGALG00010002396) #11 PLPP4 (ENSGALG00010001287) #12 WDR11 (ENSGALG00010001398) #13 FGFR2 (ENSGALG00010001411) #14 ATE1 (ENSGALG00010001426) #15 NSMCE4A (ENSGALG00010001432) #17 TACC2 (ENSGALG00010001465) #18 PLEKHA1 (ENSGALG00010001702) #20 HTRA1 (ENSGALG00010001705) #21 ENSGALG00010001707 #22 ENSGALG00010001726 ENSGALG00010003199 #22 ENSGALG00010001743 ##22 CUZD1 (ENSGALG00010001755) #27 C10orf88 (ENSGALG00010001759) #29 ENSGALG00010001764 IKZF5 (ENSGALG00010001793) PSTK (ENSGALG00010001798) ACADSB (ENSGALG00010001811) HMX3 (ENSGALG00010001815) HMX2 (ENSGALG00010001821) BUB3 (ENSGALG00010001832) GPR26 (ENSGALG00010001842) CPXM2 (ENSGALG00010001852) CHST15 (ENSGALG00010001856) Chicken MODERN SPECIES 35 TIAL1 (ENSGALG00010002361) BAG3 (ENSGALG00010002371) #8 INPP5F (ENSGALG00010002383) #9 MCMBP (ENSGALG00010002387) #10 SEC23IP (ENSGALG00010002396) #11 PLPP4 (ENSGALG00010001287) #12 WDR11 (ENSGALG00010001398) #13 FGFR2 (ENSGALG00010001411) #14 ATE1 (ENSGALG00010001426) #15 NSMCE4A (ENSGALG00010001432) #17 TACC2 (ENSGALG00010001465) #18 PLEKHA1 (ENSGALG00010001702) #20 HTRA1 (ENSGALG00010001705) #21 ENSGALG00010001707 #22 ENSGALG00010001726 ENSGALG00010003199 #22 ENSGALG00010001743 ##22 CUZD1 (ENSGALG00010001755) #27 C10orf88 (ENSGALG00010001759) #29 ENSGALG00010001764 IKZF5 (ENSGALG00010001793) PSTK (ENSGALG00010001798) ACADSB (ENSGALG00010001811) HMX3 (ENSGALG00010001815) HMX2 (ENSGALG00010001821) BUB3 (ENSGALG00010001832) GPR26 (ENSGALG00010001842) CPXM2 (ENSGALG00010001852) CHST15 (ENSGALG00010001856) OAT (ENSGALG00010001877) ENSGALG00010001884 Coelacanth DUPLICATION Coelacanth DUPLICATION Coelacanth MODERN SPECIES 2516 ENSLACG00000006324 #22 ENSLACG00000004064 ENSLACG00000003601 PSME1 (ENSLACG00000002842) EMC9 (ENSLACG00000002142) PSME2 (ENSLACG00000000939) Coelacanth MODERN SPECIES 1347 ANGPTL1 (ENSLACG00000010805) RALGPS2 (ENSLACG00000009984) FAM20B (ENSLACG00000008119) TOR3A (ENSLACG00000007557) ABL2 (ENSLACG00000005659) ENSLACG00000001840 #22 Coelacanth MODERN SPECIES 946 nsmce4a (ENSLACG00000022174) ENSLACG00000012943 #18 ENSLACG00000012172 PLEKHA1 (ENSLACG00000010973) #20 HTRA1 (ENSLACG00000010012) #21 ENSLACG00000008770 #22 C10orf88 (ENSLACG00000008626) #29 PSTK (ENSLACG00000022256) IKZF5 (ENSLACG00000006175) ACADSB (ENSLACG00000005231) HMX3 (ENSLACG00000001487) HMX2 (ENSLACG00000000874) Actinopterygii ANCESTRAL SPECIES 528 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.B.a.a ##22 Reedfish MODERN SPECIES 2 ENSECRG00000009641 ZBTB45 (ENSECRG00000009676) ENSECRG00000009686 chmp2a (ENSECRG00000009694) UBE2M (ENSECRG00000009706) ENSECRG00000009722 ENSECRG00000009734 ENSECRG00000009741 tnnc1b (ENSECRG00000009751) si:dkey-6n6.1 (ENSECRG00000009758) bgna (ENSECRG00000009777) ENSECRG00000009799 ccnq (ENSECRG00000009809) DUSP9 (ENSECRG00000009818) ENSECRG00000009832 ENSECRG00000009844 #22 trpm4a (ENSECRG00000009857) ENSECRG00000009885 ENSECRG00000009906 wdr13 (ENSECRG00000009926) ENSECRG00000009953 pnkp (ENSECRG00000009996) ENSECRG00000010035 rras (ENSECRG00000010043) ENSECRG00000010057 ENSECRG00000010069 IRF3 (ENSECRG00000010094) ENSECRG00000010145 ENSECRG00000010245 ENSECRG00000010256 ENSECRG00000010268 Neopterygii ANCESTRAL SPECIES 432 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.B.a.a.b ##22 Spotted gar DUPLICATION Spotted gar DUPLICATION Spotted gar MODERN SPECIES 455 ENSLOCG00000000128 #22 Spotted gar MODERN SPECIES 72 ENSLOCG00000000100 #22 Spotted gar MODERN SPECIES 671 apol1 (ENSLOCG00000002528) ENSLOCG00000002510 ENSLOCG00000002497 ENSLOCG00000002482 ENSLOCG00000002467 ENSLOCG00000002445 ENSLOCG00000002430 ENSLOCG00000002418 ENSLOCG00000002407 ENSLOCG00000002378 btr12 (ENSLOCG00000002362) ENSLOCG00000002347 ENSLOCG00000002338 ENSLOCG00000002307 ENSLOCG00000002270 ENSLOCG00000002245 #22 ENSLOCG00000002234 ENSLOCG00000002218 ENSLOCG00000002211 ENSLOCG00000002194 ENSLOCG00000002167 ENSLOCG00000002147 ENSLOCG00000002131 PEA15 (ENSLOCG00000002124) ENSLOCG00000018222 casq1b (ENSLOCG00000002107) ENSLOCG00000002099 ENSLOCG00000002075 ENSLOCG00000002063 MYADM (ENSLOCG00000018221) ENSLOCG00000002044 ##22 Osteoglossocephalai ANCESTRAL SPECIES 716 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 Clupeocephala ANCESTRAL SPECIES 990 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 Euteleosteomorpha ANCESTRAL SPECIES 754 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 Protacanthopterygii ANCESTRAL SPECIES 624 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.a.a.b.b.a ##22 Salmoninae ANCESTRAL SPECIES 166 ENSGT00390000009300.a.g ENSGT00950000183179.b.a ENSGT00940000159001 ENSGT00950000183086.a.a.a.l ENSGT00940000161133 ENSGT00940000159079 ENSGT00940000164281 ENSGT00440000038972.f ENSGT00390000003022.c ENSGT00950000182945.b.a.a.a.b.b.d.a ENSGT00390000016016.B ENSGT00940000153541.B.k ENSGT00940000164248.b.a.c ENSGT00940000155311.C.d.c ENSGT00390000008714.a.y ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.a.a.b.b.a.b ##22 ENSGT00940000165254.c.b.c ENSGT00940000166498.a ENSGT00390000003344.f ENSGT00940000156361.B.f ENSGT00390000014494.xb ENSGT00950000182931.B.a.b.j ENSGT00950000183011.c.a.a.f ENSGT00390000016950.ob ENSGT00390000018003.a ENSGT00940000154484.A ENSGT00390000001400 ENSGT00940000160734.d.d ENSGT00390000016392.p ENSGT00400000023987.d.d Huchen MODERN SPECIES 37 ENSHHUG00000017026 nmnat1 (ENSHHUG00000017044) lzic (ENSHHUG00000017052) ENSHHUG00000017060 clstn1 (ENSHHUG00000017074) ENSHHUG00000017132 ctnnbip1 (ENSHHUG00000017147) pik3cd (ENSHHUG00000017171) tmem201 (ENSHHUG00000018823) ENSHHUG00000018840 ENSHHUG00000019020 tpk2 (ENSHHUG00000019213) ENSHHUG00000019250 bgna (ENSHHUG00000019257) dedd (ENSHHUG00000019264) ENSHHUG00000019271 #22 ENSHHUG00000019279 ##22 atp2b3a (ENSHHUG00000019305) nr1h5 (ENSHHUG00000019636) slc66a1 (ENSHHUG00000019646) trim33 (ENSHHUG00000019655) bcas2 (ENSHHUG00000019878) DENND2C (ENSHHUG00000019892) ampd1 (ENSHHUG00000019906) csde1 (ENSHHUG00000020222) SIKE1 (ENSHHUG00000021017) ENSHHUG00000021025 TMCO4 (ENSHHUG00000021040) vwa1 (ENSHHUG00000021071) otud3 (ENSHHUG00000021079) TMEM240 (ENSHHUG00000021088) Acanthomorphata ANCESTRAL SPECIES 719 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 Euacanthomorphacea ANCESTRAL SPECIES 455 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 Percomorphaceae ANCESTRAL SPECIES 7 ENSGT00940000160409 ENSGT00940000156846 ENSGT00390000012992 ENSGT00950000183133.d ENSGT01030000234629.B ENSGT00940000158954 ENSGT00940000164475 ENSGT00940000165576.a.b ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00390000007688.b ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 ENSGT00940000162108 #25 ENSGT00510000050141.a ENSGT00950000182846.a.a.a.a.b ENSGT00940000160260 ENSGT00390000001958 ENSGT00940000158169.b ENSGT00940000157663 ENSGT00940000154679 ENSGT00950000183011.d.c ENSGT00940000158399 ENSGT00940000153567.b.b ENSGT00950000182998.C.a.k ENSGT00950000183146.a.b.b ENSGT00940000159736.a Percomorphaceae_B ANCESTRAL SPECIES 6 ENSGT00940000153615.a.a.a ENSGT00730000114829 ENSGT00950000182805.a.a.a.a.b ENSGT00940000160409 ENSGT00940000156846 ENSGT00390000012992 ENSGT00950000183133.d ENSGT01030000234629.B ENSGT00940000158954 ENSGT00940000164475 ENSGT00940000163299.B.b.b.g.b ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 ENSGT00940000162108 #25 ENSGT00510000050141.a ENSGT00950000182846.a.a.a.a.b ENSGT00940000160260 ENSGT00390000001958 ENSGT00940000158169.b ENSGT00940000157663 ENSGT00940000154679 ENSGT00950000183011.d.c ENSGT00940000158399 ENSGT00940000153567.b.b ENSGT00950000182998.C.a.k ENSGT00950000183146.a.b.b ENSGT00940000159736.a Ovalentaria ANCESTRAL SPECIES 216 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d.e.a ##22 Ovalentaria_B ANCESTRAL SPECIES ENSGT00950000183145.E #22 Cichlidae ANCESTRAL SPECIES ENSGT00950000183145.E #22 Midas cichlid MODERN SPECIES 685 ENSACIG00000023821 ENSACIG00000023825 ENSACIG00000023828 ENSACIG00000023830 #22 vbp1 (ENSACIG00000023834) RAB39B (ENSACIG00000023837) zgc:162171 (ENSACIG00000023841) Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00950000183145.E #22 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000183145.E #22 Haplochromini ANCESTRAL SPECIES ENSGT00950000183145.E #22 Haplochromini_A ANCESTRAL SPECIES ENSGT00950000183145.E #22 Haplochromini_B ANCESTRAL SPECIES ENSGT00950000183145.E #22 Zebra mbuna MODERN SPECIES 1107 ZNF653 (ENSMZEG00005001900) tspan35 (ENSMZEG00005001881) tspan4b (ENSMZEG00005001874) ENSMZEG00005001858 nosip (ENSMZEG00005001807) rcn3 (ENSMZEG00005001801) abat (ENSMZEG00005001747) pdxdc1 (ENSMZEG00005001733) slc25a23b (ENSMZEG00005001708) gps1 (ENSMZEG00005001674) ENSMZEG00005001658 ENSMZEG00005001552 ube2z (ENSMZEG00005001531) atp5mc1 (ENSMZEG00005001524) ENSMZEG00005001512 ENSMZEG00005001485 #22 ENSMZEG00005001479 ENSMZEG00005001318 mpp2a (ENSMZEG00005001260) ENSMZEG00005001111 ENSMZEG00005001089 smarce1 (ENSMZEG00005001067) ENSMZEG00005001061 rpl23 (ENSMZEG00005000906) ENSMZEG00005000874 ENSMZEG00005000861 CA10 (ENSMZEG00005000607) ENSMZEG00005000583 ENSMZEG00005000546 timm29 (ENSMZEG00005000529) yipf2 (ENSMZEG00005000520) Atherinomorphae ANCESTRAL SPECIES 237 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d.e.a ##22 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00950000183145.E #22 Cyprinodontoidei ANCESTRAL SPECIES ENSGT00950000183145.E #22 NAME_4 ANCESTRAL SPECIES ENSGT00950000183145.E #22 Mummichog MODERN SPECIES 2218 klf6a (ENSFHEG00000018797) PFKP (ENSFHEG00000018751) ENSFHEG00000000478 ENSFHEG00000018564 wdr37 (ENSFHEG00000018542) idi1 (ENSFHEG00000018499) cpne3 (ENSFHEG00000018465) cpne3 (ENSFHEG00000018413) cpne3 (ENSFHEG00000018298) rmdn1 (ENSFHEG00000018279) WWP1 (ENSFHEG00000018259) ENSFHEG00000018207 snx16 (ENSFHEG00000018198) ENSFHEG00000018187 YWHAG (ENSFHEG00000018168) ENSFHEG00000018156 #22 ENSFHEG00000018144 hspb1 (ENSFHEG00000018134) hspb1 (ENSFHEG00000018125) ENSFHEG00000018122 ENSFHEG00000018112 ENSFHEG00000018096 Oryzias ANCESTRAL SPECIES 209 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d.e.a ##22 Oryzias_b ANCESTRAL SPECIES ENSGT00950000183145.E #22 Javanese ricefish MODERN SPECIES 21 adnpb (ENSOJAG00000023274) pard6b (ENSOJAG00000023269) ARFGEF2 (ENSOJAG00000023063) bcl2l1 (ENSOJAG00000023045) cox4i2 (ENSOJAG00000023040) taf13 (ENSOJAG00000023037) ENSOJAG00000023029 ENSOJAG00000023022 ENSOJAG00000023020 ENSOJAG00000022697 lamb2 (ENSOJAG00000021744) USP19 (ENSOJAG00000021704) ENSOJAG00000021697 ENSOJAG00000021682 ENSOJAG00000021664 ENSOJAG00000021642 #22 ENSOJAG00000021628 pim1 (ENSOJAG00000021597) gss (ENSOJAG00000021554) zgc:103759 (ENSOJAG00000021543) ARHGAP4 (ENSOJAG00000021471) cav4b (ENSOJAG00000021464) fam50a (ENSOJAG00000021434) ENSOJAG00000021424 ENSOJAG00000021417 sars1 (ENSOJAG00000021396) ENSOJAG00000021389 tmem106c (ENSOJAG00000021384) ENSOJAG00000021381 krt18a.2 (ENSOJAG00000021376) krt18a.1 (ENSOJAG00000021370) Oryzias_a ANCESTRAL SPECIES 261 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d.e.a.a ##22 Japanese Medaka HdrR DUPLICATION Japanese Medaka HdrR MODERN SPECIES 12 itgb1a (ENSORLG00000004663) nrp1a (ENSORLG00000004717) ENSORLG00000004738 CUL2 (ENSORLG00000004776) CCNY (ENSORLG00000004790) GJD4 (ENSORLG00000024722) fzd8a (ENSORLG00000004795) klf6a (ENSORLG00000026971) PFKP (ENSORLG00000004933) ENSORLG00000028284 ENSORLG00000027308 ENSORLG00000029428 ENSORLG00000026410 ENSORLG00000027470 ENSORLG00000004947 ##22 ENSORLG00000026129 #22 ENSORLG00000029348 ADARB2 (ENSORLG00000027340) wdr37 (ENSORLG00000004980) idi1 (ENSORLG00000004991) cpne3 (ENSORLG00000005092) CPNE3 (ENSORLG00000029296) rmdn1 (ENSORLG00000029876) WWP1 (ENSORLG00000005146) ENSORLG00000025307 snx16 (ENSORLG00000005193) ENSORLG00000005218 adh5 (ENSORLG00000005183) ENSORLG00000024843 ENSORLG00000019355 serpinb1l3 (ENSORLG00000005255) Japanese Medaka HdrR MODERN SPECIES 21 adnpb (ENSORLG00000001864) pard6b (ENSORLG00000001861) ARFGEF2 (ENSORLG00000001855) bcl2l1 (ENSORLG00000025151) cox4i2 (ENSORLG00000001813) taf13 (ENSORLG00000023250) tnnc2.2 (ENSORLG00000001797) ENSORLG00000001761 ENSORLG00000001750 ENSORLG00000001709 lamb2 (ENSORLG00000028202) USP19 (ENSORLG00000001685) ENSORLG00000026988 ENSORLG00000028314 ENSORLG00000027819 ENSORLG00000029735 #22 ENSORLG00000026909 ENSORLG00000001660 pim1 (ENSORLG00000001653) gss (ENSORLG00000001633) zgc:103759 (ENSORLG00000001613) ENSORLG00000001598 cav4b (ENSORLG00000024542) fam50a (ENSORLG00000001578) ENSORLG00000001557 sars1 (ENSORLG00000001547) ENSORLG00000001527 tmem106c (ENSORLG00000001519) ENSORLG00000001505 krt18a.2 (ENSORLG00000001491) krt18a.1 (ENSORLG00000001481) Percomorphaceae_C ANCESTRAL SPECIES ENSGT00950000183145.E #22 Eupercaria ANCESTRAL SPECIES ENSGT00950000183145.E #22 Eupecaria_A ANCESTRAL SPECIES ENSGT00950000183145.E #22 Eupecaria_B ANCESTRAL SPECIES ENSGT00950000183145.E #22 Eupecaria_C ANCESTRAL SPECIES ENSGT00950000183145.E #22 Eupercaria_incertae_sedis ANCESTRAL SPECIES ENSGT00950000183145.E #22 European seabass MODERN SPECIES 21 ENSDLAG00005029231 ENSDLAG00005005891 ENSDLAG00005029541 ENSDLAG00005020571 ENSDLAG00005013141 ENSDLAG00005015840 ENSDLAG00005034745 ENSDLAG00005002283 ENSDLAG00005024524 ENSDLAG00005024452 ENSDLAG00005024441 ENSDLAG00005033915 ENSDLAG00005030229 ENSDLAG00005028641 ##22 ENSDLAG00005027964 #25 ENSDLAG00005002383 #22 ENSDLAG00005027805 ENSDLAG00005033377 ENSDLAG00005024075 ENSDLAG00005030043 ##22 ENSDLAG00005034086 ENSDLAG00005024432 ENSDLAG00005031603 ENSDLAG00005031706 ##22 ENSDLAG00005024053 ENSDLAG00005030191 ENSDLAG00005024037 ENSDLAG00005034459 ENSDLAG00005019193 ENSDLAG00005031707 ENSDLAG00005024032 Percomorphaceae_D ANCESTRAL SPECIES ENSGT00950000183145.E #22 Anabantaria ANCESTRAL SPECIES 1 ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a Anabantoidei ANCESTRAL SPECIES ENSGT00530000069282.A ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a Climbing perch MODERN SPECIES TMC8 (ENSATEG00000028212) TMC8 (ENSATEG00000020004) TMC6 (ENSATEG00000019964) ENSATEG00000019940 aspscr1 (ENSATEG00000019927) ENSATEG00000019897 ENSATEG00000019873 MAFG (ENSATEG00000019866) ENSATEG00000019852 SIRT7 (ENSATEG00000019785) pcyt2 (ENSATEG00000019734) gnav1 (ENSATEG00000019693) npb (ENSATEG00000019653) sgsh (ENSATEG00000019621) slc26a11 (ENSATEG00000019534) ENSATEG00000019521 #22 ENSATEG00000019502 ##22 ENSATEG00000026831 ENSATEG00000025501 nanos3 (ENSATEG00000027158) CC2D1A (ENSATEG00000019431) mri1 (ENSATEG00000019410) zgc:136864 (ENSATEG00000025205) ENSATEG00000019388 ENSATEG00000019353 khsrp (ENSATEG00000019332) DCAF15 (ENSATEG00000019319) ENSATEG00000019287 rln3b (ENSATEG00000019231) ENSATEG00000019171 ENSATEG00000019157 Carangaria ANCESTRAL SPECIES ENSGT00950000183145.E #22 Pleuronectoidei ANCESTRAL SPECIES ENSGT00950000183145.E #22 Tongue sole MODERN SPECIES 31 ENSCSEG00000013603 ap1b1 (ENSCSEG00000013466) rasl10a (ENSCSEG00000013444) ENSCSEG00000013436 osbp2b (ENSCSEG00000013407) tcn2 (ENSCSEG00000013399) ENSCSEG00000013382 #22 ENSCSEG00000013374 dguok (ENSCSEG00000013362) ENSCSEG00000013360 ENSCSEG00000013357 ANK1 (ENSCSEG00000013307) ebf2 (ENSCSEG00000013272) ENSCSEG00000012719 Elephant shark MODERN SPECIES 2192 ENSCMIG00000001433 #22 Cyclostomata ANCESTRAL SPECIES ENSGT00950000183145.E #22 Lamprey DUPLICATION Lamprey DUPLICATION Lamprey MODERN SPECIES 4286 ENSPMAG00000002092 #22 Lamprey MODERN SPECIES 1913 ENSPMAG00000002082 #22 Lamprey DUPLICATION Lamprey DUPLICATION Lamprey DUPLICATION Lamprey MODERN SPECIES 50 ENSPMAG00000006384 ENSPMAG00000006378 ENSPMAG00000006281 ENSPMAG00000006271 ENSPMAG00000006267 #22 ENSPMAG00000006255 ENSPMAG00000006243 #22 ENSPMAG00000006238 ENSPMAG00000006232 ENSPMAG00000006049 Lamprey MODERN SPECIES 5586 ENSPMAG00000000988 #22 Lamprey MODERN SPECIES 50 ENSPMAG00000006384 ENSPMAG00000006378 ENSPMAG00000006281 ENSPMAG00000006271 ENSPMAG00000006267 #22 ENSPMAG00000006255 ENSPMAG00000006243 #22 ENSPMAG00000006238 ENSPMAG00000006232 ENSPMAG00000006049 Lamprey MODERN SPECIES 5757 ENSPMAG00000005399 #22 Lamprey MODERN SPECIES 3391 ENSPMAG00000002042 #22 Vertebrata DUPLICATION Vertebrata ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Gnathostomata ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Euteleostomi ANCESTRAL SPECIES 1428 ENSGT00950000183145.C ##22 ENSGT00950000183145.A.a ##22 Sarcopterygii ANCESTRAL SPECIES 252 ENSGT00390000017379 ENSGT00390000011596.a ENSGT00940000153653.a.b.a.b ENSGT00390000009864 ENSGT00390000004368 ENSGT00940000155286 ENSGT00390000013910 ENSGT00940000156623 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00940000158171 ENSGT00390000006617 ENSGT00950000183145.C ##22 ENSGT00950000183145.A.a ##22 ENSGT00940000161663 Tetrapoda ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Amniota ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Mammalia ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Theria ANCESTRAL SPECIES 26 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Eutheria ANCESTRAL SPECIES 13 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384 #29 ENSGT00940000164044 #30 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a Boreoeutheria ANCESTRAL SPECIES 16 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 Euarchontoglires ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Glires ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Rodentia ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Rodentia_A ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Sciuridae ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Marmotini ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Alpin marmot MODERN SPECIES 53 MCMBP (ENSMMMG00000000744) #10 SEC23IP (ENSMMMG00000000778) #11 PLPP4 (ENSMMMG00000000832) #12 ENSMMMG00000000883 ENSMMMG00000000896 WDR11 (ENSMMMG00000000912) #13 FGFR2 (ENSMMMG00000000986) #14 ATE1 (ENSMMMG00000001092) #15 NSMCE4A (ENSMMMG00000001206) #17 ENSMMMG00000001271 #18 ENSMMMG00000001553 #18 BTBD16 (ENSMMMG00000001579) #19 ENSMMMG00000001679 #20 ENSMMMG00000001757 ENSMMMG00000001770 #21 ENSMMMG00000001790 ##22 C10orf120 (ENSMMMG00000001925) #24 ENSMMMG00000001938 #25 ENSMMMG00000001979 #25 CUZD1 (ENSMMMG00000001993) #27 PSTK (ENSMMMG00000002014) IKZF5 (ENSMMMG00000002033) ACADSB (ENSMMMG00000002052) HMX2 (ENSMMMG00000002076) ENSMMMG00000002090 GPR26 (ENSMMMG00000002142) CPXM2 (ENSMMMG00000002158) CHST15 (ENSMMMG00000002233) OAT (ENSMMMG00000002258) LHPP (ENSMMMG00000002272) FAM53B (ENSMMMG00000002296) Sauria ANCESTRAL SPECIES 8 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT01030000235500 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Archelosauria ANCESTRAL SPECIES 10 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT01030000235500 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Archosauria ANCESTRAL SPECIES 7 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000163882 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Aves ANCESTRAL SPECIES 6 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000163882.e.a ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b.a ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 African ostrich MODERN SPECIES 463 ENSSCUG00000007854 ENSSCUG00000007853 ENSSCUG00000007847 ##22 CUZD1 (ENSSCUG00000007842) #27 ENSSCUG00000007840 #29 ENSSCUG00000007839 PSTK (ENSSCUG00000007836) IKZF5 (ENSSCUG00000007835) ACADSB (ENSSCUG00000007834) BUB3 (ENSSCUG00000007830) GPR26 (ENSSCUG00000007827) CPXM2 (ENSSCUG00000007823) CHST15 (ENSSCUG00000007819) OAT (ENSSCUG00000007810) LHPP (ENSSCUG00000007807) FAM53B (ENSSCUG00000007804) EEF1AKMT2 (ENSSCUG00000007801) ABRAXAS2 (ENSSCUG00000007799) Neognathae ANCESTRAL SPECIES 7 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000163882.e.a ENSGT00950000183145.A.b.a ##22 ENSGT00940000154525.b.a #27 ENSGT00940000163882.f ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Neognathae_b ANCESTRAL SPECIES 8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000163882.e.a ENSGT00940000154525.b.a #27 ENSGT00940000163882.f ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Passeriformes ANCESTRAL SPECIES 10 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000154525.b.a #27 ENSGT00940000163882.f ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00950000182865.b.b.b.c.b ENSGT00630000089895 Great tit MODERN SPECIES 26 ENSPMJG00000005634 BAG3 (ENSPMJG00000005635) #8 INPP5F (ENSPMJG00000005637) #9 MCMBP (ENSPMJG00000005642) #10 SEC23IP (ENSPMJG00000005643) #11 PLPP4 (ENSPMJG00000005646) #12 WDR11 (ENSPMJG00000005652) #13 FGFR2 (ENSPMJG00000005686) #14 ATE1 (ENSPMJG00000005695) #15 NSMCE4A (ENSPMJG00000005697) #17 TACC2 (ENSPMJG00000005700) #18 PLEKHA1 (ENSPMJG00000005718) #20 HTRA1 (ENSPMJG00000005725) #21 ENSPMJG00000005727 ENSPMJG00000005730 ENSPMJG00000005731 ##22 ENSPMJG00000005732 ENSPMJG00000005734 ##22 C10orf88 (ENSPMJG00000005738) #29 ENSPMJG00000005740 IKZF5 (ENSPMJG00000005744) PSTK (ENSPMJG00000005749) ACADSB (ENSPMJG00000005752) HMX3 (ENSPMJG00000005758) HMX2 (ENSPMJG00000005760) BUB3 (ENSPMJG00000005761) GPR26 (ENSPMJG00000005767) CPXM2 (ENSPMJG00000005769) CHST15 (ENSPMJG00000005775) ENSPMJG00000005788 OAT (ENSPMJG00000005814) Passeriformes_d ANCESTRAL SPECIES 7 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000154525.b.a #27 ENSGT00940000163882.f ENSGT00940000163882.e.a ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00950000182865.b.b.b.c.b Flycatcher MODERN SPECIES 25 ENSFALG00000024667 INPP5F (ENSFALG00000002164) #9 MCMBP (ENSFALG00000002162) #10 SEC23IP (ENSFALG00000002159) #11 PLPP4 (ENSFALG00000026547) #12 ENSFALG00000024601 WDR11 (ENSFALG00000002154) #13 FGFR2 (ENSFALG00000002152) #14 ATE1 (ENSFALG00000002151) #15 NSMCE4A (ENSFALG00000002150) #17 TACC2 (ENSFALG00000002148) #18 PLEKHA1 (ENSFALG00000002147) #20 HTRA1 (ENSFALG00000028171) #21 ENSFALG00000002135 #22 ENSFALG00000025833 ENSFALG00000004924 ##22 ENSFALG00000023413 ENSFALG00000004913 #27 C10orf88 (ENSFALG00000028462) #29 ENSFALG00000004871 IKZF5 (ENSFALG00000004728) ACADSB (ENSFALG00000024790) HMX3 (ENSFALG00000026829) BUB3 (ENSFALG00000004735) ENSFALG00000028168 GPR26 (ENSFALG00000004740) CPXM2 (ENSFALG00000004744) CHST15 (ENSFALG00000004749) ENSFALG00000004758 OAT (ENSFALG00000004768) NKX1-2 (ENSFALG00000004783) Galloanserae DUPLICATION Galloanserae ANCESTRAL SPECIES ENSGT00950000183145.C.a ##22 Anatidae ANCESTRAL SPECIES 4 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000154525.b.a.c.a #27 ENSGT00950000183145.C.a ##22 ENSGT00940000163882.e.a ENSGT00940000154525.b.a.c.b #27 ENSGT00940000163882.f ENSGT00950000183145.C.b ##22 ENSGT00940000154525.b.a.d #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Pink-footed goose MODERN SPECIES 74 ENSABRG00000006774 ##22 ENSABRG00000006754 ENSABRG00000006728 #27 ENSABRG00000006699 ##22 CUZD1 (ENSABRG00000006669) #27 C10orf88 (ENSABRG00000006659) #29 ENSABRG00000006640 PSTK (ENSABRG00000006637) IKZF5 (ENSABRG00000006630) ACADSB (ENSABRG00000006622) HMX3 (ENSABRG00000006612) HMX2 (ENSABRG00000006606) BUB3 (ENSABRG00000006598) GPR26 (ENSABRG00000006566) CPXM2 (ENSABRG00000006558) CHST15 (ENSABRG00000006544) Galloanserae ANCESTRAL SPECIES 6 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00940000163882.e.a ENSGT00950000183145.C.b ##22 ENSGT00940000154525.b.a.c.b #27 ENSGT00940000163882.f ENSGT00940000154525.b.a.d #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Anatidae ANCESTRAL SPECIES 4 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000154525.b.a.c.a #27 ENSGT00950000183145.C.a ##22 ENSGT00940000163882.e.a ENSGT00940000154525.b.a.c.b #27 ENSGT00940000163882.f ENSGT00950000183145.C.b ##22 ENSGT00940000154525.b.a.d #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 ENSGT00940000159002 Duck MODERN SPECIES 24 ENSAPLG00000021626 #9 ENSAPLG00000021679 #9 ENSAPLG00000028455 MCMBP (ENSAPLG00000009939) #10 ENSAPLG00000025076 #11 ENSAPLG00000018439 #11 PLPP4 (ENSAPLG00000011003) #12 WDR11 (ENSAPLG00000011124) #13 FGFR2 (ENSAPLG00000011952) #14 ATE1 (ENSAPLG00000012854) #15 NSMCE4A (ENSAPLG00000013184) #17 TACC2 (ENSAPLG00000013559) #18 PLEKHA1 (ENSAPLG00000013754) #20 HTRA1 (ENSAPLG00000014182) #21 ENSAPLG00000017490 #27 ENSAPLG00000028379 ##22 ENSAPLG00000022800 #27 ENSAPLG00000002332 C10orf88 (ENSAPLG00000018529) #29 ENSAPLG00000015412 PSTK (ENSAPLG00000015335) IKZF5 (ENSAPLG00000015301) ACADSB (ENSAPLG00000015129) HMX3 (ENSAPLG00000025450) BUB3 (ENSAPLG00000014959) GPR26 (ENSAPLG00000014879) ENSAPLG00000029693 ENSAPLG00000014617 OAT (ENSAPLG00000015424) NKX1-2 (ENSAPLG00000018196) LHPP (ENSAPLG00000015176) Pink-footed goose MODERN SPECIES 74 ENSABRG00000006774 ##22 ENSABRG00000006754 ENSABRG00000006728 #27 ENSABRG00000006699 ##22 CUZD1 (ENSABRG00000006669) #27 C10orf88 (ENSABRG00000006659) #29 ENSABRG00000006640 PSTK (ENSABRG00000006637) IKZF5 (ENSABRG00000006630) ACADSB (ENSABRG00000006622) HMX3 (ENSABRG00000006612) HMX2 (ENSABRG00000006606) BUB3 (ENSABRG00000006598) GPR26 (ENSABRG00000006566) CPXM2 (ENSABRG00000006558) CHST15 (ENSABRG00000006544) OAT (ENSABRG00000006520) NKX1-2 (ENSABRG00000006517) ENSABRG00000006514 Phasianidae ANCESTRAL SPECIES 6 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00940000163882.e.a ENSGT00950000183145.C.b ##22 ENSGT00940000163882.f ENSGT00950000183145.A.b.a ##22 ENSGT00940000154525.b.a.d #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Japanese quail DUPLICATION Japanese quail DUPLICATION Japanese quail MODERN SPECIES 24 BAG3 (ENSCJPG00005020144) #8 INPP5F (ENSCJPG00005020145) #9 MCMBP (ENSCJPG00005020146) #10 SEC23IP (ENSCJPG00005020147) #11 PLPP4 (ENSCJPG00005020152) #12 WDR11 (ENSCJPG00005020153) #13 FGFR2 (ENSCJPG00005020154) #14 ATE1 (ENSCJPG00005020156) #15 NSMCE4A (ENSCJPG00005020157) #17 TACC2 (ENSCJPG00005020158) #18 PLEKHA1 (ENSCJPG00005020159) #20 HTRA1 (ENSCJPG00005020160) #21 ENSCJPG00005020161 #27 ENSCJPG00005020162 ENSCJPG00005020163 ##22 ENSCJPG00005020164 ##22 ENSCJPG00005020166 C10orf88 (ENSCJPG00005020167) #29 ENSCJPG00005020168 PSTK (ENSCJPG00005020169) IKZF5 (ENSCJPG00005020170) ACADSB (ENSCJPG00005020171) HMX3 (ENSCJPG00005020174) HMX2 (ENSCJPG00005020175) BUB3 (ENSCJPG00005020176) GPR26 (ENSCJPG00005020183) CPXM2 (ENSCJPG00005020184) CHST15 (ENSCJPG00005000893) OAT (ENSCJPG00005000924) ENSCJPG00005000989 LHPP (ENSCJPG00005001010) Japanese quail MODERN SPECIES 23 RNH1 (ENSCJPG00005018469) CHKA (ENSCJPG00005018468) KMT5B (ENSCJPG00005018467) ENSCJPG00005018466 LRP5 (ENSCJPG00005018446) PPP6R3 (ENSCJPG00005018445) GAL (ENSCJPG00005018444) CPT1A (ENSCJPG00005018027) ENSCJPG00005018026 ENSCJPG00005018025 ENSCJPG00005017827 ENSCJPG00005017814 RAB3IL1 (ENSCJPG00005017813) BEST1 (ENSCJPG00005017812) ENSCJPG00005017811 ENSCJPG00005017810 ##22 MPEG1 (ENSCJPG00005017809) DTX4 (ENSCJPG00005017808) CNTF (ENSCJPG00005017807) ZFP91 (ENSCJPG00005017806) LPXN (ENSCJPG00005017802) CTNND1 (ENSCJPG00005017712) ENSCJPG00005017711 TMX2 (ENSCJPG00005017710) MED19 (ENSCJPG00005017709) ZDHHC5 (ENSCJPG00005017610) CLP1 (ENSCJPG00005017609) YPEL4 (ENSCJPG00005017608) SERPING1 (ENSCJPG00005017605) ENSCJPG00005017604 TIMM10 (ENSCJPG00005017603) Japanese quail MODERN SPECIES 24 ENSCJPG00005020143 BAG3 (ENSCJPG00005020144) #8 INPP5F (ENSCJPG00005020145) #9 MCMBP (ENSCJPG00005020146) #10 SEC23IP (ENSCJPG00005020147) #11 PLPP4 (ENSCJPG00005020152) #12 WDR11 (ENSCJPG00005020153) #13 FGFR2 (ENSCJPG00005020154) #14 ATE1 (ENSCJPG00005020156) #15 NSMCE4A (ENSCJPG00005020157) #17 TACC2 (ENSCJPG00005020158) #18 PLEKHA1 (ENSCJPG00005020159) #20 HTRA1 (ENSCJPG00005020160) #21 ENSCJPG00005020161 #27 ENSCJPG00005020162 ENSCJPG00005020163 ##22 ENSCJPG00005020164 ##22 ENSCJPG00005020166 C10orf88 (ENSCJPG00005020167) #29 ENSCJPG00005020168 PSTK (ENSCJPG00005020169) IKZF5 (ENSCJPG00005020170) ACADSB (ENSCJPG00005020171) HMX3 (ENSCJPG00005020174) HMX2 (ENSCJPG00005020175) BUB3 (ENSCJPG00005020176) GPR26 (ENSCJPG00005020183) CPXM2 (ENSCJPG00005020184) CHST15 (ENSCJPG00005000893) OAT (ENSCJPG00005000924) ENSCJPG00005000989 Phasianidae_b ANCESTRAL SPECIES ENSGT00950000183145.C.b ##22 Turkey DUPLICATION Turkey MODERN SPECIES 28 ENSMGAG00000011703 ABRAXAS2 (ENSMGAG00000011692) ENSMGAG00000011686 ENSMGAG00000011677 ENSMGAG00000011675 ENSMGAG00000011673 ENSMGAG00000011662 GPR26 (ENSMGAG00000011624) ENSMGAG00000011617 ENSMGAG00000011619 HMX3 (ENSMGAG00000011613) ACADSB (ENSMGAG00000011603) ENSMGAG00000017710 ENSMGAG00000011599 ENSMGAG00000011584 ENSMGAG00000011564 ##22 ENSMGAG00000022374 ##22 ENSMGAG00000011568 #27 ENSMGAG00000011580 #29 ENSMGAG00000011551 #21 ENSMGAG00000011530 #20 ENSMGAG00000011516 #18 ENSMGAG00000011490 #15 ENSMGAG00000011508 ENSMGAG00000011456 #14 ENSMGAG00000022256 #13 ENSMGAG00000018783 #13 ENSMGAG00000011434 #12 SEC23IP (ENSMGAG00000011411) #11 ENSMGAG00000017041 #9 ENSMGAG00000011398 #10 Turkey MODERN SPECIES 32 ENSMGAG00000018813 ##22 Australian saltwater crocodile DUPLICATION Australian saltwater crocodile MODERN SPECIES 68 PLPP4 (ENSCPRG00005010400) #12 WDR11 (ENSCPRG00005010238) #13 FGFR2 (ENSCPRG00005010191) #14 ATE1 (ENSCPRG00005010141) #15 NSMCE4A (ENSCPRG00005010129) #17 TACC2 (ENSCPRG00005010117) #18 ENSCPRG00005010107 BTBD16 (ENSCPRG00005010103) #19 PLEKHA1 (ENSCPRG00005010094) #20 HTRA1 (ENSCPRG00005010065) #21 ENSCPRG00005010058 ##22 ENSCPRG00005010028 ENSCPRG00005010020 ENSCPRG00005010017 ##22 ENSCPRG00005010015 ##22 ENSCPRG00005010013 ##22 ENSCPRG00005009997 CUZD1 (ENSCPRG00005009971) #27 C10orf88 (ENSCPRG00005009963) #29 ENSCPRG00005009952 PSTK (ENSCPRG00005009943) IKZF5 (ENSCPRG00005009941) ENSCPRG00005009939 ACADSB (ENSCPRG00005009928) HMX3 (ENSCPRG00005009925) HMX2 (ENSCPRG00005009921) BUB3 (ENSCPRG00005009920) GPR26 (ENSCPRG00005009894) CPXM2 (ENSCPRG00005009835) ENSCPRG00005009822 CHST15 (ENSCPRG00005009813) Australian saltwater crocodile MODERN SPECIES 68 SEC23IP (ENSCPRG00005010423) #11 ENSCPRG00005010403 PLPP4 (ENSCPRG00005010400) #12 WDR11 (ENSCPRG00005010238) #13 FGFR2 (ENSCPRG00005010191) #14 ATE1 (ENSCPRG00005010141) #15 NSMCE4A (ENSCPRG00005010129) #17 TACC2 (ENSCPRG00005010117) #18 ENSCPRG00005010107 BTBD16 (ENSCPRG00005010103) #19 PLEKHA1 (ENSCPRG00005010094) #20 HTRA1 (ENSCPRG00005010065) #21 ENSCPRG00005010058 ##22 ENSCPRG00005010028 ENSCPRG00005010020 ENSCPRG00005010017 ##22 ENSCPRG00005010015 ##22 ENSCPRG00005010013 ##22 ENSCPRG00005009997 CUZD1 (ENSCPRG00005009971) #27 C10orf88 (ENSCPRG00005009963) #29 ENSCPRG00005009952 PSTK (ENSCPRG00005009943) IKZF5 (ENSCPRG00005009941) ENSCPRG00005009939 ACADSB (ENSCPRG00005009928) HMX3 (ENSCPRG00005009925) HMX2 (ENSCPRG00005009921) BUB3 (ENSCPRG00005009920) GPR26 (ENSCPRG00005009894) CPXM2 (ENSCPRG00005009835) Cryptodira ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Testudinoidea ANCESTRAL SPECIES 263 ENSGT00950000183145.C ##22 ENSGT00940000163882.c Emydidae ANCESTRAL SPECIES 355 ENSGT00950000183145.C ##22 ENSGT00940000163882.c Three-toed box turtle MODERN SPECIES 39 TIAL1 (ENSTMTG00000018217) #7 ENSTMTG00000018249 #8 ENSTMTG00000018261 #8 INPP5F (ENSTMTG00000018304) #9 MCMBP (ENSTMTG00000018812) #10 SEC23IP (ENSTMTG00000018842) #11 PLPP4 (ENSTMTG00000018885) #12 WDR11 (ENSTMTG00000018901) #13 FGFR2 (ENSTMTG00000018950) #14 ATE1 (ENSTMTG00000018984) #15 NSMCE4A (ENSTMTG00000019033) #17 ENSTMTG00000019055 #18 BTBD16 (ENSTMTG00000019086) #19 PLEKHA1 (ENSTMTG00000019123) #20 HTRA1 (ENSTMTG00000019179) #21 ENSTMTG00000019204 ##22 ENSTMTG00000019231 ENSTMTG00000019289 C10orf88 (ENSTMTG00000019303) #29 PSTK (ENSTMTG00000019320) IKZF5 (ENSTMTG00000019326) ACADSB (ENSTMTG00000019334) HMX3 (ENSTMTG00000019354) HMX2 (ENSTMTG00000019363) BUB3 (ENSTMTG00000019371) GPR26 (ENSTMTG00000019385) ENSTMTG00000019402 ENSTMTG00000019417 CHST15 (ENSTMTG00000019442) OAT (ENSTMTG00000019462) NKX1-2 (ENSTMTG00000019477) Testudinidae ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Abingdon island giant tortoise MODERN SPECIES 2009 ENSCABG00000006138 ENSCABG00000006139 ATF5 (ENSCABG00000006142) LIG1 (ENSCABG00000006177) ZSWIM9 (ENSCABG00000007952) ENSCABG00000007953 ENSCABG00000007955 ZNF628 (ENSCABG00000007959) NAT14 (ENSCABG00000007962) ENSCABG00000007965 ##22 SBK3 (ENSCABG00000007970) ENSCABG00000007974 ENSCABG00000007976 ENSCABG00000007977 ENSCABG00000007980 ENSCABG00000007982 GEMIN7 (ENSCABG00000007984) CLASRP (ENSCABG00000007986) RELB (ENSCABG00000007988) CLPTM1 (ENSCABG00000007989) ENSCABG00000007990 ERCC1 (ENSCABG00000007991) PPP1R37 (ENSCABG00000007999) ENSCABG00000008004 NKPD1 (ENSCABG00000008005) Lepidosauria ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Episquamata ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Toxicofera ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Lizard MODERN SPECIES 849 ENSACAG00000023869 ENSACAG00000017822 ENSACAG00000034662 ENSACAG00000040744 ENSACAG00000025055 ENSACAG00000034964 ENSACAG00000045150 ENSACAG00000029165 ENSACAG00000017814 ENSACAG00000017812 ZP1 (ENSACAG00000017805) PRPF19 (ENSACAG00000017797) TMEM109 (ENSACAG00000045544) TMEM132A (ENSACAG00000017785) SLC15A3 (ENSACAG00000017784) ENSACAG00000017783 ##22 ENSACAG00000028471 VPS37C (ENSACAG00000017779) ENSACAG00000017772 VWCE (ENSACAG00000017769) DDB1 (ENSACAG00000017758) TKFC (ENSACAG00000017750) CYB561A3 (ENSACAG00000017746) TMEM138 (ENSACAG00000017745) ENSACAG00000017739 PPP1R32 (ENSACAG00000017727) ENSACAG00000017725 SYT7 (ENSACAG00000017713) ENSACAG00000040128 DAGLA (ENSACAG00000017695) MYRF (ENSACAG00000017691) Laterata ANCESTRAL SPECIES ENSGT00940000161426 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 ENSGT00940000159002 Argentine black and white tegu DUPLICATION Argentine black and white tegu DUPLICATION Argentine black and white tegu MODERN SPECIES 58 ENSSMRG00000004482 ##22 ENSSMRG00000004488 ##22 ENSSMRG00000004505 ##22 C10orf88 (ENSSMRG00000004535) #29 ENSSMRG00000004550 PSTK (ENSSMRG00000004569) IKZF5 (ENSSMRG00000004571) ACADSB (ENSSMRG00000004574) HMX3 (ENSSMRG00000004577) HMX2 (ENSSMRG00000004581) BUB3 (ENSSMRG00000004592) ENSSMRG00000004627 GPR26 (ENSSMRG00000004632) CPXM2 (ENSSMRG00000004643) CHST15 (ENSSMRG00000004684) OAT (ENSSMRG00000004707) Argentine black and white tegu DUPLICATION Argentine black and white tegu MODERN SPECIES 65 TIAL1 (ENSSMRG00000004608) #7 BAG3 (ENSSMRG00000004620) #8 INPP5F (ENSSMRG00000004622) #9 MCMBP (ENSSMRG00000004639) #10 SEC23IP (ENSSMRG00000005344) #11 PLPP4 (ENSSMRG00000005367) #12 WDR11 (ENSSMRG00000005374) #13 FGFR2 (ENSSMRG00000005415) #14 ATE1 (ENSSMRG00000005447) #15 ENSSMRG00000005469 TACC2 (ENSSMRG00000005489) #18 BTBD16 (ENSSMRG00000005515) #19 PLEKHA1 (ENSSMRG00000005536) #20 HTRA1 (ENSSMRG00000005544) #21 ENSSMRG00000005553 ##22 ENSSMRG00000005555 ##22 ENSSMRG00000005559 Argentine black and white tegu MODERN SPECIES 58 ENSSMRG00000004482 ##22 ENSSMRG00000004488 ##22 ENSSMRG00000004505 ##22 C10orf88 (ENSSMRG00000004535) #29 ENSSMRG00000004550 PSTK (ENSSMRG00000004569) IKZF5 (ENSSMRG00000004571) ACADSB (ENSSMRG00000004574) HMX3 (ENSSMRG00000004577) HMX2 (ENSSMRG00000004581) BUB3 (ENSSMRG00000004592) ENSSMRG00000004627 GPR26 (ENSSMRG00000004632) CPXM2 (ENSSMRG00000004643) CHST15 (ENSSMRG00000004684) OAT (ENSSMRG00000004707) NKX1-2 (ENSSMRG00000004710) Argentine black and white tegu MODERN SPECIES 65 ENSSMRG00000004590 TIAL1 (ENSSMRG00000004608) #7 BAG3 (ENSSMRG00000004620) #8 INPP5F (ENSSMRG00000004622) #9 MCMBP (ENSSMRG00000004639) #10 SEC23IP (ENSSMRG00000005344) #11 PLPP4 (ENSSMRG00000005367) #12 WDR11 (ENSSMRG00000005374) #13 FGFR2 (ENSSMRG00000005415) #14 ATE1 (ENSSMRG00000005447) #15 ENSSMRG00000005469 TACC2 (ENSSMRG00000005489) #18 BTBD16 (ENSSMRG00000005515) #19 PLEKHA1 (ENSSMRG00000005536) #20 HTRA1 (ENSSMRG00000005544) #21 ENSSMRG00000005553 ##22 ENSSMRG00000005555 ##22 ENSSMRG00000005559 Coelacanth DUPLICATION Coelacanth DUPLICATION Coelacanth DUPLICATION Coelacanth DUPLICATION Coelacanth MODERN SPECIES 252 ENSLACG00000004881 LACTBL1 (ENSLACG00000008696) ENSLACG00000009372 ##22 ENSLACG00000010680 ENSLACG00000011813 ENSLACG00000013121 ##22 PHC2 (ENSLACG00000014173) ENSLACG00000014695 ENSLACG00000015265 ##22 rap1gapa (ENSLACG00000015738) alpl (ENSLACG00000017157) alpl (ENSLACG00000017187) ECE1 (ENSLACG00000017425) ENSLACG00000017443 EIF4G3 (ENSLACG00000017636) HP1BP3 (ENSLACG00000017868) SH2D5 (ENSLACG00000017939) KIF17 (ENSLACG00000017977) CLDN19 (ENSLACG00000018062) ENSLACG00000018111 YBX1 (ENSLACG00000018135) PPIH (ENSLACG00000018153) ENSLACG00000018183 ela3l (ENSLACG00000018193) Coelacanth MODERN SPECIES 252 ENSLACG00000004881 LACTBL1 (ENSLACG00000008696) ENSLACG00000009372 ##22 ENSLACG00000010680 ENSLACG00000011813 ENSLACG00000013121 ##22 PHC2 (ENSLACG00000014173) ENSLACG00000014695 ENSLACG00000015265 ##22 rap1gapa (ENSLACG00000015738) alpl (ENSLACG00000017157) alpl (ENSLACG00000017187) ECE1 (ENSLACG00000017425) ENSLACG00000017443 EIF4G3 (ENSLACG00000017636) HP1BP3 (ENSLACG00000017868) SH2D5 (ENSLACG00000017939) KIF17 (ENSLACG00000017977) Coelacanth MODERN SPECIES 252 ENSLACG00000004881 LACTBL1 (ENSLACG00000008696) ENSLACG00000009372 ##22 ENSLACG00000010680 ENSLACG00000011813 ENSLACG00000013121 ##22 PHC2 (ENSLACG00000014173) ENSLACG00000014695 ENSLACG00000015265 ##22 rap1gapa (ENSLACG00000015738) alpl (ENSLACG00000017157) alpl (ENSLACG00000017187) ECE1 (ENSLACG00000017425) ENSLACG00000017443 EIF4G3 (ENSLACG00000017636) HP1BP3 (ENSLACG00000017868) SH2D5 (ENSLACG00000017939) KIF17 (ENSLACG00000017977) CLDN19 (ENSLACG00000018062) ENSLACG00000018111 YBX1 (ENSLACG00000018135) Coelacanth MODERN SPECIES 2795 ENSLACG00000003912 ##22 Coelacanth DUPLICATION Coelacanth DUPLICATION Coelacanth MODERN SPECIES 2302 APEX2 (ENSLACG00000000865) CXXC1 (ENSLACG00000001387) ZNF628 (ENSLACG00000003033) ENSLACG00000004185 ENSLACG00000006641 ##22 Coelacanth MODERN SPECIES 3354 RBP5 (ENSLACG00000001425) CLSTN3 (ENSLACG00000002557) ENSLACG00000004071 ##22 Coelacanth MODERN SPECIES 3343 ENSLACG00000000750 ##22 Actinopterygii ANCESTRAL SPECIES 1194 ENSGT00950000183145.C ##22 ENSGT00950000183145.A.a ##22 Reedfish MODERN SPECIES 10 ENSECRG00000001753 ltb4r (ENSECRG00000001744) ltb4r (ENSECRG00000001733) ENSECRG00000001713 ENSECRG00000001697 sdr39u1 (ENSECRG00000001677) ENSECRG00000001650 slc12a10.3 (ENSECRG00000001500) ENSECRG00000001411 ENSECRG00000001387 ENSECRG00000001359 ENSECRG00000001278 ENSECRG00000001170 ENSECRG00000001098 ENSECRG00000000953 ENSECRG00000000847 ##22 zgc:171579 (ENSECRG00000000829) ENSECRG00000000809 ENSECRG00000000791 ENSECRG00000000783 ENSECRG00000000772 ENSECRG00000000757 ENSECRG00000000745 ENSECRG00000000732 ENSECRG00000000721 ENSECRG00000000705 ENSECRG00000000695 ENSECRG00000000680 ENSECRG00000000666 ENSECRG00000000659 ENSECRG00000000646 Neopterygii ANCESTRAL SPECIES 235 ENSGT00940000161462 ENSGT00930000151038 ENSGT00940000157751 ENSGT00390000017282 ENSGT00940000159740 ENSGT00730000112261 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934 ENSGT00530000063829.A ENSGT01030000234566.e.a ENSGT00510000048688 ENSGT00980000199297 ENSGT00940000156408 ENSGT00950000183145.C ##22 ENSGT00390000006173 Osteoglossocephalai ANCESTRAL SPECIES 151 ENSGT00950000183108.b.a.b ENSGT00950000182991.A.a.c.a.b ENSGT00390000014242.l ENSGT00940000161462 ENSGT00930000151038 ENSGT00390000017282 ENSGT00940000159740 ENSGT00730000112261 ENSGT00940000164400 ENSGT00940000156934.l ENSGT00530000063829.A ENSGT01030000234566.e.a ENSGT00510000048688 ENSGT00980000199297 ENSGT00940000156408 ENSGT00950000183145.C ##22 ENSGT00390000006173 Osteoglossiformes ANCESTRAL SPECIES 20 ENSGT00390000000521 ENSGT00940000153801.b ENSGT00950000183108.b.a.b ENSGT00390000014242.l ENSGT00940000161462 ENSGT00930000151038 ENSGT00390000017282 ENSGT00940000159740 ENSGT00730000112261 ENSGT00940000164400 ENSGT00940000156934.l ENSGT00530000063829.A.i ENSGT01030000234566.e.a ENSGT00510000048688 ENSGT00940000156408 ENSGT00950000183145.C ##22 ENSGT00390000006173 ENSGT01030000234822 ENSGT00940000160140.a.b ENSGT00520000055634.a.e P. kingsleyae MODERN SPECIES 1 ENSPKIG00000012701 ##22 ENSPKIG00000012735 gdf6a (ENSPKIG00000012754) SYBU (ENSPKIG00000012768) EBAG9 (ENSPKIG00000012789) ENY2 (ENSPKIG00000012828) TRHR (ENSPKIG00000012858) TMEM74 (ENSPKIG00000012866) emc2 (ENSPKIG00000012898) EIF3E (ENSPKIG00000012995) RSPO2 (ENSPKIG00000013040) ENSPKIG00000013061 ENSPKIG00000013112 ENSPKIG00000013237 ENSPKIG00000013258 zgc:91890 (ENSPKIG00000013291) Clupeocephala ANCESTRAL SPECIES 19 ENSGT00950000183163.a.a.bb ENSGT00950000182941.a.a.b.e.b ENSGT00390000011598 ENSGT00390000015257 ENSGT00950000183028.a.b.b ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a ENSGT00940000157071 Euteleosteomorpha ANCESTRAL SPECIES 12 ENSGT00950000182941.a.a.b.e.b ENSGT00390000011598 ENSGT00390000015257 ENSGT00950000183028.a.b.b ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000154450.tc ENSGT00940000160519.a.b ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a ENSGT00940000157071 Acanthomorphata ANCESTRAL SPECIES 108 ENSGT00940000166197 ENSGT00910000144211 ENSGT00940000162741 ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000154450.tc ENSGT00940000160519.a.b ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a ENSGT00940000157071 Cod MODERN SPECIES 21 ENSGMOG00000020117 ENSGMOG00000018632 ENSGMOG00000018593 ENSGMOG00000018566 ENSGMOG00000018551 ENSGMOG00000034805 ENSGMOG00000018531 ENSGMOG00000031815 ENSGMOG00000027783 ENSGMOG00000026533 ENSGMOG00000018506 ENSGMOG00000012123 ENSGMOG00000012121 ENSGMOG00000022941 ENSGMOG00000023324 ENSGMOG00000035848 ##22 ENSGMOG00000022448 ##22 ENSGMOG00000025397 ##22 ENSGMOG00000024875 ##22 ENSGMOG00000013289 ENSGMOG00000008152 ENSGMOG00000000536 ENSGMOG00000013992 ENSGMOG00000014041 ENSGMOG00000014082 ENSGMOG00000002104 ENSGMOG00000014218 ENSGMOG00000016516 ENSGMOG00000024488 ENSGMOG00000014109 ENSGMOG00000035897 Euacanthomorphacea ANCESTRAL SPECIES 24 ENSGT00400000024746 ENSGT00950000183029.B.j.d ENSGT00940000162741 ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000154450.tc ENSGT00940000160519.a.b ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a ENSGT00940000157071 Pinecone sodierfish MODERN SPECIES 2 eloa (ENSMMDG00005014413) ENSMMDG00005004363 ENSMMDG00005004386 rpl11 (ENSMMDG00005004396) srsf10b (ENSMMDG00005004405) gja9b (ENSMMDG00005004412) mycbp (ENSMMDG00005004420) ENSMMDG00005004431 ENSMMDG00005004480 ENSMMDG00005004742 slc9a1b (ENSMMDG00005004765) KDM1B (ENSMMDG00005004848) DPY19L4 (ENSMMDG00005005461) ints8 (ENSMMDG00005006147) CCNE2 (ENSMMDG00005006171) ENSMMDG00005006191 ##22 gdf6b (ENSMMDG00005006203) pkhd1l1.2 (ENSMMDG00005006239) ENSMMDG00005006295 nudcd1 (ENSMMDG00005006299) trhrb (ENSMMDG00005006308) TMEM74 (ENSMMDG00005006311) eif3eb (ENSMMDG00005006314) pleca (ENSMMDG00005006473) ENSMMDG00005015229 ENSMMDG00005015230 ENSMMDG00005015231 slc52a2 (ENSMMDG00005015232) ENSMMDG00005015233 nfatc1 (ENSMMDG00005015237) atp9b (ENSMMDG00005015304) Percomorphaceae ANCESTRAL SPECIES 10 ENSGT00950000183029.A ENSGT00950000183029.B.j.d ENSGT00940000162741 ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000154450.tc ENSGT00940000160519.a.b ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a ENSGT00940000157071 Tiger tail seahorse MODERN SPECIES 382 TMC8 (ENSHCOG00000015222) TMC6 (ENSHCOG00000015176) aspscr1 (ENSHCOG00000015163) ENSHCOG00000015097 ENSHCOG00000015090 MAFG (ENSHCOG00000015051) ENSHCOG00000015027 SIRT7 (ENSHCOG00000015014) pcyt2 (ENSHCOG00000014983) gnav1 (ENSHCOG00000014948) npb (ENSHCOG00000014919) sgsh (ENSHCOG00000014883) slc26a11 (ENSHCOG00000014873) ENSHCOG00000014825 ENSHCOG00000014819 #25 ENSHCOG00000014812 ##22 ENSHCOG00000014808 ENSHCOG00000014800 nanos3 (ENSHCOG00000014790) ENSHCOG00000014716 mri1 (ENSHCOG00000014695) zgc:136864 (ENSHCOG00000000782) ENSHCOG00000014673 chrna6 (ENSHCOG00000014652) chrnb3a (ENSHCOG00000014637) ENSHCOG00000014622 DNAH6 (ENSHCOG00000014593) SCLT1 (ENSHCOG00000014455) zgc:77739 (ENSHCOG00000014444) ENSHCOG00000014431 pcdh10a (ENSHCOG00000014419) Percomorphaceae_B ANCESTRAL SPECIES 15 ENSGT00940000166197 ENSGT00690000103882 ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT01030000235133 ENSGT00940000154450.tc ENSGT00940000160519.a.b ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000166022.c ENSGT00940000162855.a.a.a.b ENSGT00940000177098 ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c Ovalentaria ANCESTRAL SPECIES 12 ENSGT00940000164334 ENSGT00690000103882 ENSGT00940000162741 ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000160519.a.b ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000161029 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000166022.c ENSGT00940000162855.a.a.a.b ENSGT00940000177098 ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b Atherinomorphae ANCESTRAL SPECIES 12 ENSGT00940000164334 ENSGT00690000103882 ENSGT00940000162741 ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000160519.a.b ENSGT01030000235133.b ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000176110 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a ENSGT00940000157071 Cyprinodontiformes ANCESTRAL SPECIES 10 ENSGT00510000048364 ENSGT00390000004808.f ENSGT00390000010118.c.a.b ENSGT00940000155107.a.a.b ENSGT00560000078630 ENSGT00940000164496.a.a ENSGT00950000182978.B ENSGT01090000260093.b.f ENSGT01090000260093.b.e ENSGT00940000156213.r ENSGT00940000156213.q.a ENSGT00940000156213.q.b ENSGT00530000064067 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00950000183145.C ##22 ENSGT00940000157594 ENSGT00940000176110 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a ENSGT00940000157071 Cyprinodontoidei ANCESTRAL SPECIES 31 ENSGT01090000260093.b.f.o ENSGT01090000260093.b.e ENSGT00940000156213.r ENSGT00940000156213.q.a ENSGT00940000156213.q.b ENSGT00530000064067 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00950000183145.C ##22 ENSGT00940000157594 ENSGT00940000176110 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a ENSGT00940000157071 ENSGT00940000159356.a.b Poeciliinae ANCESTRAL SPECIES 24 ENSGT00510000048364 ENSGT00390000004808.f ENSGT00390000010118.c.a.b ENSGT00950000182978.B ENSGT00940000164496.a.a ENSGT00560000078630 ENSGT00940000155107.a.a.b ENSGT01090000260093.b.f.o ENSGT01090000260093.b.e ENSGT00940000156213.r ENSGT00940000156213.q.a ENSGT00940000156213.q.b ENSGT00530000064067 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00950000183145.C ##22 ENSGT00940000157594 ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a ENSGT00940000157071 ENSGT00940000159356.a.b Platyfish MODERN SPECIES 4 ENSXMAG00000028561 ENSXMAG00000028082 ENSXMAG00000017971 eya3 (ENSXMAG00000017972) si:ch211-195b13.1 (ENSXMAG00000017993) smim13 (ENSXMAG00000019893) zc3h12ab (ENSXMAG00000025043) ENSXMAG00000029667 XKR8 (ENSXMAG00000021722) xkr8.3 (ENSXMAG00000005543) ENSXMAG00000021549 srsf4 (ENSXMAG00000005545) msto1 (ENSXMAG00000005548) ENSXMAG00000005562 ints8 (ENSXMAG00000005568) ENSXMAG00000027303 ##22 pkhd1l1.2 (ENSXMAG00000005407) nudcd1 (ENSXMAG00000005085) trhrb (ENSXMAG00000014745) eif3eb (ENSXMAG00000014733) pleca (ENSXMAG00000018031) ENSXMAG00000027496 ENSXMAG00000002149 ENSXMAG00000002150 slc52a2 (ENSXMAG00000029794) ENSXMAG00000002151 nfatc1 (ENSXMAG00000000761) atp9b (ENSXMAG00000000763) sall3b (ENSXMAG00000000798) ST3GAL1 (ENSXMAG00000021082) ENSXMAG00000020909 Oryzias ANCESTRAL SPECIES 23 ENSGT00940000166197 ENSGT00910000144211 ENSGT00950000183029.B.j.d ENSGT00940000164334 ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000160519.a.b ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000176110 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a ENSGT01000000214440.A.a.b.a.g.a ENSGT00940000164559.A Oryzias_a ANCESTRAL SPECIES 18 ENSGT00390000002428.a ENSGT00940000166197 ENSGT00910000144211 ENSGT00950000183029.B.j.d ENSGT00940000164334 ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00940000162855.a.a.a.b ENSGT00940000154843.F.d ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a ENSGT01000000214440.A.a.b.a.g.a ENSGT00940000164559.A ENSGT00940000164926 Japanese Medaka HdrR MODERN SPECIES 2 ENSORLG00000007567 rpl11 (ENSORLG00000007578) ENSORLG00000025116 ENSORLG00000007585 eef1a (ENSORLG00000007614) ENSORLG00000007671 mycbp (ENSORLG00000027339) gja9b (ENSORLG00000007682) srsf10b (ENSORLG00000007691) ENSORLG00000007702 slc9a1b (ENSORLG00000007714) ENSORLG00000007724 KDM1B (ENSORLG00000007744) DPY19L4 (ENSORLG00000007771) ints8 (ENSORLG00000007855) ENSORLG00000027329 ##22 gdf6b (ENSORLG00000007867) ENSORLG00000007925 ENY2 (ENSORLG00000030402) nudcd1 (ENSORLG00000007957) trhrb (ENSORLG00000029082) TMEM74 (ENSORLG00000007970) pleca (ENSORLG00000007995) ENSORLG00000008003 ENSORLG00000008009 ENSORLG00000026217 slc52a2 (ENSORLG00000008027) ENSORLG00000008034 nfatc1 (ENSORLG00000008055) STX12 (ENSORLG00000008076) ENSORLG00000008080 Chinese medaka DUPLICATION Chinese medaka MODERN SPECIES 1791 ENSOSIG00000012342 ##22 Chinese medaka MODERN SPECIES 136 ENSOSIG00000014250 rpl11 (ENSOSIG00000014249) ENSOSIG00000014229 eef1a1l1 (ENSOSIG00000014228) ENSOSIG00000014226 mycbp (ENSOSIG00000014223) gja9b (ENSOSIG00000014222) srsf10b (ENSOSIG00000014221) ENSOSIG00000014220 slc9a1b (ENSOSIG00000011703) ENSOSIG00000011691 KDM1B (ENSOSIG00000010422) DPY19L4 (ENSOSIG00000010418) ENSOSIG00000010415 ints8 (ENSOSIG00000009477) ENSOSIG00000009465 ##22 gdf6b (ENSOSIG00000009463) ENSOSIG00000009462 ENY2 (ENSOSIG00000009461) nudcd1 (ENSOSIG00000009206) trhrb (ENSOSIG00000009198) TMEM74 (ENSOSIG00000009196) pleca (ENSOSIG00000007698) ENSOSIG00000007672 ENSOSIG00000007669 ENSOSIG00000007666 slc52a2 (ENSOSIG00000007663) nfatc1 (ENSOSIG00000007660) STX12 (ENSOSIG00000007651) ENSOSIG00000007644 ENSOSIG00000007635 Ovalentaria_B ANCESTRAL SPECIES 15 ENSGT00950000183029.A ENSGT00940000164334 ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT01030000235133 ENSGT00940000160519.a.b ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000161029 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000166022.c ENSGT00940000162855.a.a.a.b ENSGT00940000177098 ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b Cichlidae ANCESTRAL SPECIES 7 ENSGT00400000024746 ENSGT00950000183029.A ENSGT00940000164334 ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT01030000235133 ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000161029 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000166022.c ENSGT00940000162855.a.a.a.b ENSGT00940000177098 ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b Pseudocrenilabrinae ANCESTRAL SPECIES 12 ENSGT00400000024746 ENSGT00950000183029.A ENSGT00940000164334 ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT01030000235133 ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000161029 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000166022.c ENSGT00940000162855.a.a.a.b ENSGT00940000177098 ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b Pseudocrenilabrinae_A ANCESTRAL SPECIES 9 ENSGT00400000024746 ENSGT00950000183029.A ENSGT00940000164334 ENSGT00940000166232.e ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT01030000235133 ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000161029 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000166022.c ENSGT00940000162855.a.a.a.b ENSGT00940000177098 ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b Haplochromini ANCESTRAL SPECIES 5 ENSGT00400000024746 ENSGT00950000183029.A ENSGT00940000164334 ENSGT00940000166232.e ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT01030000235133 ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000166022.c ENSGT00940000162855.a.a.a.b ENSGT00940000177098 ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c Burton s mouthbrooder MODERN SPECIES 568 ENSHBUG00000017046 ENSHBUG00000017108 ENSHBUG00000017123 ENSHBUG00000017136 ENSHBUG00000017166 ENSHBUG00000017195 mycbp (ENSHBUG00000017241) gja9b (ENSHBUG00000017256) srsf10b (ENSHBUG00000017264) ENSHBUG00000017272 slc9a1b (ENSHBUG00000017310) ENSHBUG00000017356 KDM1B (ENSHBUG00000017496) DPY19L4 (ENSHBUG00000017538) ints8 (ENSHBUG00000017603) ENSHBUG00000017646 ##22 ENSHBUG00000017681 gdf6b (ENSHBUG00000017694) pkhd1l1.2 (ENSHBUG00000017910) ENY2 (ENSHBUG00000017955) nudcd1 (ENSHBUG00000000530) trhrb (ENSHBUG00000017993) TMEM74 (ENSHBUG00000017998) eif3eb (ENSHBUG00000018043) ENSHBUG00000018067 pleca (ENSHBUG00000018266) ENSHBUG00000018345 Haplochromini_A ANCESTRAL SPECIES 5 ENSGT00950000183029.B.j.d ENSGT00950000183029.A ENSGT00940000164334 ENSGT00940000166232.e ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT01030000235133 ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000166022.c ENSGT00940000162855.a.a.a.b ENSGT00940000177098 ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c P. nyererei MODERN SPECIES 388 ENSPNYG00000007379 rpl11 (ENSPNYG00000007331) ENSPNYG00000007306 ENSPNYG00000007288 ENSPNYG00000007263 ENSPNYG00000007251 mycbp (ENSPNYG00000007219) ENSPNYG00000007181 srsf10b (ENSPNYG00000007168) ENSPNYG00000007074 slc9a1b (ENSPNYG00000007054) ENSPNYG00000007008 KDM1B (ENSPNYG00000006929) DPY19L4 (ENSPNYG00000006850) ints8 (ENSPNYG00000006742) ENSPNYG00000006695 ##22 gdf6b (ENSPNYG00000006658) pkhd1l1.2 (ENSPNYG00000006487) ENY2 (ENSPNYG00000006447) nudcd1 (ENSPNYG00000006432) trhrb (ENSPNYG00000006378) TMEM74 (ENSPNYG00000006365) eif3eb (ENSPNYG00000006316) ENSPNYG00000006286 pleca (ENSPNYG00000005906) ENSPNYG00000005739 ENSPNYG00000005719 ENSPNYG00000005659 ENSPNYG00000005638 slc52a2 (ENSPNYG00000005627) ENSPNYG00000005598 Haplochromini_B ANCESTRAL SPECIES 1 ENSGT00910000144211 ENSGT00950000183029.B.j.d ENSGT00940000164334 ENSGT00940000166232.e ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT01030000235133 ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000161029 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000166022.c ENSGT00940000162855.a.a.a.b ENSGT00940000177098 ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b Zebra mbuna MODERN SPECIES 1104 ENSMZEG00005026107 rpl11 (ENSMZEG00005026109) ENSMZEG00005026110 ENSMZEG00005026112 ENSMZEG00005026116 mycbp (ENSMZEG00005026117) ENSMZEG00005026120 srsf10b (ENSMZEG00005026122) ENSMZEG00005026124 slc9a1b (ENSMZEG00005026126) ENSMZEG00005026131 KDM1B (ENSMZEG00005026135) DPY19L4 (ENSMZEG00005026139) ints8 (ENSMZEG00005026144) CCNE2 (ENSMZEG00005026150) ENSMZEG00005026151 ##22 gdf6b (ENSMZEG00005026152) ENSMZEG00005026153 pkhd1l1.2 (ENSMZEG00005026155) ENY2 (ENSMZEG00005026161) nudcd1 (ENSMZEG00005026166) trhrb (ENSMZEG00005026168) TMEM74 (ENSMZEG00005026173) eif3eb (ENSMZEG00005026174) pleca (ENSMZEG00005026181) ENSMZEG00005026198 ENSMZEG00005026199 ENSMZEG00005026200 ENSMZEG00005026202 ENSMZEG00005026204 slc52a2 (ENSMZEG00005026205) Pomacentridae ANCESTRAL SPECIES 103 ENSGT00950000183029.A ENSGT00940000164334 ENSGT00950000183029.B.j.d ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000160519.a.b ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776.n ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000166022.c ENSGT00940000162855.a.a.a.b ENSGT00940000177098 ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c Bicolor damselfish MODERN SPECIES 915 ca4a (ENSSPAG00000018081) MTMR4 (ENSSPAG00000017987) hpda (ENSSPAG00000017926) RNF43 (ENSSPAG00000017881) ENSSPAG00000017870 supt4h1 (ENSSPAG00000017849) ENSSPAG00000017810 ENSSPAG00000017799 ENSSPAG00000017786 ##22 YWHAG (ENSSPAG00000017778) hspb1 (ENSSPAG00000017771) ENSSPAG00000017758 Pomacentridae_A ANCESTRAL SPECIES 117 ENSGT00390000002428.a ENSGT00940000166197 ENSGT00910000144211 ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000160519.a.b ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776.n ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000166022.c ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a Amphiprion ANCESTRAL SPECIES 104 ENSGT00950000183029.B.j.d ENSGT00940000164334.e ENSGT00950000183029.A ENSGT00910000144211 ENSGT00940000166197 ENSGT00390000002428.a ENSGT00490000043398 ENSGT00940000156197 ENSGT00940000156221 ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00970000193390.c.a.b.u.b.a ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776.n ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000166022.c ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a Orange clownfish MODERN SPECIES 8 ENSAPEG00000016322 ENSAPEG00000016361 ENSAPEG00000016381 rpl11 (ENSAPEG00000016389) ENSAPEG00000016421 eloa (ENSAPEG00000016461) pithd1 (ENSAPEG00000016489) lypla2 (ENSAPEG00000016511) sfpq (ENSAPEG00000016556) ENSAPEG00000016579 KDM1B (ENSAPEG00000016633) DPY19L4 (ENSAPEG00000016693) ints8 (ENSAPEG00000016771) ENSAPEG00000016877 CCNE2 (ENSAPEG00000016889) ENSAPEG00000016972 ##22 gdf6b (ENSAPEG00000017000) pkhd1l1.2 (ENSAPEG00000017059) ENY2 (ENSAPEG00000017519) nudcd1 (ENSAPEG00000017546) trhrb (ENSAPEG00000017589) TMEM74 (ENSAPEG00000017694) eif3eb (ENSAPEG00000017710) ENSAPEG00000017745 pleca (ENSAPEG00000017760) EPPK1 (ENSAPEG00000017862) ENSAPEG00000017885 ENSAPEG00000017927 slc52a2 (ENSAPEG00000017933) ENSAPEG00000017958 nfatc1 (ENSAPEG00000018010) Clown anemonefish MODERN SPECIES 966 DPY19L4 (ENSAOCG00000016537) ints8 (ENSAOCG00000016479) ENSAOCG00000016372 CCNE2 (ENSAOCG00000016354) ENSAOCG00000001121 ##22 Spiny chromis MODERN SPECIES 2484 ints8 (ENSAPOG00000017918) ENSAPOG00000017875 ENSAPOG00000017783 ##22 Percomorphaceae_C ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Eupercaria ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Tetraodontidae ANCESTRAL SPECIES 20 ENSGT00490000043398 ENSGT00390000002428.a ENSGT00940000166197 ENSGT00910000144211 ENSGT00940000164334 ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000160519.a.b ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT01090000259987.b.a ENSGT00940000157827 ENSGT00940000159108 ENSGT00940000155137.a.b ENSGT00390000000878 ENSGT00390000014833 ENSGT00390000011295.b ENSGT00940000155602.q ENSGT00390000010145.c.b ENSGT00940000156347 ENSGT00440000034270.a.a ENSGT00390000011422 ENSGT00940000155519.qb.b.f ENSGT00390000008295.b Fugu MODERN SPECIES 3 pithd1 (ENSTRUG00000025313) eloa (ENSTRUG00000004133) ENSTRUG00000004371 rpl11 (ENSTRUG00000020944) ef-1a (ENSTRUG00000005066) ENSTRUG00000006072 mycbp (ENSTRUG00000023350) gja9b (ENSTRUG00000006302) ENSTRUG00000033169 ENSTRUG00000020508 slc9a1b (ENSTRUG00000006336) ENSTRUG00000026704 KDM1B (ENSTRUG00000004004) DPY19L4 (ENSTRUG00000006943) ints8 (ENSTRUG00000007434) ENSTRUG00000023770 ##22 gdf6b (ENSTRUG00000028197) ENSTRUG00000007871 ENSTRUG00000008153 sp4 (ENSTRUG00000008217) CDCA7L (ENSTRUG00000008420) RAPGEF5 (ENSTRUG00000008504) il-6 (ENSTRUG00000008735) TOMM7 (ENSTRUG00000008757) hycc1 (ENSTRUG00000008765) klhl7 (ENSTRUG00000008889) ENSTRUG00000009355 ENSTRUG00000009434 cspg5b (ENSTRUG00000031045) mrpl3 (ENSTRUG00000009650) ENSTRUG00000009867 Tetraodon MODERN SPECIES 15 ENSTNIG00000003754 rpl11 (ENSTNIG00000002616) ENSTNIG00000002617 ENSTNIG00000002618 ENSTNIG00000002619 ENSTNIG00000005728 mycbp (ENSTNIG00000005727) gja9b (ENSTNIG00000005726) slc9a1b (ENSTNIG00000005725) ENSTNIG00000005724 KDM1B (ENSTNIG00000019845) DPY19L4 (ENSTNIG00000004233) ints8 (ENSTNIG00000004234) ENSTNIG00000004235 ##22 ENSTNIG00000004139 ENSTNIG00000004138 pkhd1l1.2 (ENSTNIG00000005470) ENSTNIG00000019517 ENSTNIG00000002903 sp4 (ENSTNIG00000002904) CDCA7L (ENSTNIG00000002905) RAPGEF5 (ENSTNIG00000002906) ENSTNIG00000002544 hycc1 (ENSTNIG00000002543) klhl7 (ENSTNIG00000002542) ENSTNIG00000002541 ENSTNIG00000002540 cspg5b (ENSTNIG00000006435) mrpl3 (ENSTNIG00000006434) Eupecaria_A ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Eupecaria_B ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Eupecaria_C ANCESTRAL SPECIES 13 ENSGT00910000144211 ENSGT00940000164334 ENSGT00400000024746 ENSGT00950000183029.B.j.d ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000161029 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000177098 ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c Eupercaria_incertae_sedis ANCESTRAL SPECIES 10 ENSGT00910000144211 ENSGT00940000164334 ENSGT00400000024746 ENSGT00950000183029.B.j.d ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000160519.a.b ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000161029 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000177098 ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c European seabass MODERN SPECIES 22 pithd1 (ENSDLAG00005014758) eloa (ENSDLAG00005014745) ENSDLAG00005033309 rpl11 (ENSDLAG00005014702) ENSDLAG00005014694 ENSDLAG00005028494 ENSDLAG00005029407 ENSDLAG00005014126 ENSDLAG00005014132 ENSDLAG00005013511 ENSDLAG00005013490 ENSDLAG00005012001 DPY19L4 (ENSDLAG00005011843) ENSDLAG00005011742 CCNE2 (ENSDLAG00005011713) ENSDLAG00005011678 ##22 pkhd1l1.2 (ENSDLAG00005011328) ENY2 (ENSDLAG00005011304) nudcd1 (ENSDLAG00005011227) trhrb (ENSDLAG00005011218) TMEM74 (ENSDLAG00005011213) eif3eb (ENSDLAG00005011074) pleca (ENSDLAG00005010626) ENSDLAG00005028652 ENSDLAG00005027821 ENSDLAG00005010578 ENSDLAG00005010576 nfatc1 (ENSDLAG00005010540) sall3b (ENSDLAG00005009469) ENSDLAG00005009459 ENSDLAG00005009446 Perciformes ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Perciformes_a ANCESTRAL SPECIES 14 ENSGT00910000144211 ENSGT00950000183029.B.j.d ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000154450.tc ENSGT00940000160519.a.b ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00950000182894.C.i ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00940000167880 ENSGT00940000176110 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000177098 ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b Pike perch MODERN SPECIES 8 TMC8 (ENSSLUG00000011774) TMC6 (ENSSLUG00000011795) NOTUM (ENSSLUG00000011812) aspscr1 (ENSSLUG00000011832) ENSSLUG00000011837 ENSSLUG00000011839 MAFG (ENSSLUG00000011872) ENSSLUG00000011877 SIRT7 (ENSSLUG00000011885) pcyt2 (ENSSLUG00000011895) gnav1 (ENSSLUG00000011932) npb (ENSSLUG00000011938) sgsh (ENSSLUG00000011945) slc26a11 (ENSSLUG00000011974) ENSSLUG00000012234 ENSSLUG00000012239 ##22 ENSSLUG00000012243 ENSSLUG00000012248 ENSSLUG00000012252 nanos3 (ENSSLUG00000012257) CC2D1A (ENSSLUG00000012303) mri1 (ENSSLUG00000012957) ENSSLUG00000012981 ENSSLUG00000013195 khsrp (ENSSLUG00000013199) DCAF15 (ENSSLUG00000013203) RFX1 (ENSSLUG00000013210) rln3b (ENSSLUG00000013218) TNPO2 (ENSSLUG00000013231) ENSSLUG00000013256 NHERF2 (ENSSLUG00000013266) Channel bull blenny MODERN SPECIES 2 rpl11 (ENSCGOG00000017530) ENSCGOG00000017593 ENSCGOG00000018194 mycbp (ENSCGOG00000018199) gja9b (ENSCGOG00000018200) ENSCGOG00000018202 slc9a1b (ENSCGOG00000018231) ENSCGOG00000004081 ENSCGOG00000004187 KDM1B (ENSCGOG00000004226) tekt1 (ENSCGOG00000004650) ENSCGOG00000004652 DPY19L4 (ENSCGOG00000004660) ints8 (ENSCGOG00000004741) CCNE2 (ENSCGOG00000005761) ENSCGOG00000005783 ##22 gdf6b (ENSCGOG00000005795) ENSCGOG00000005805 ENSCGOG00000005806 ENY2 (ENSCGOG00000005814) nudcd1 (ENSCGOG00000005821) trhrb (ENSCGOG00000005896) TMEM74 (ENSCGOG00000005898) eif3eb (ENSCGOG00000005905) pleca (ENSCGOG00000006091) ENSCGOG00000012831 ENSCGOG00000012835 ENSCGOG00000012839 ENSCGOG00000012847 ENSCGOG00000012882 ENSCGOG00000012910 Percomorphaceae_D ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Carangaria ANCESTRAL SPECIES 14 ENSGT00950000183029.B.j.d ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000160519.a.b ENSGT01030000235133 ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00940000161029 ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000177098 ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a Pleuronectoidei ANCESTRAL SPECIES 33 ENSGT00950000183029.A ENSGT00940000164334 ENSGT00940000166232 ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000160519.a.b ENSGT01030000235133 ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a ENSGT00940000157071 Tongue sole MODERN SPECIES 9 ENSCSEG00000007982 ENSCSEG00000007992 ENSCSEG00000008004 ENSCSEG00000008011 ENSCSEG00000008033 mycbp (ENSCSEG00000008166) gja9b (ENSCSEG00000008175) ENSCSEG00000008184 srsf10b (ENSCSEG00000008199) ENSCSEG00000008220 slc9a1b (ENSCSEG00000008266) ENSCSEG00000008281 KDM1B (ENSCSEG00000008311) DPY19L4 (ENSCSEG00000008333) ints8 (ENSCSEG00000008358) ENSCSEG00000008546 ##22 gdf6b (ENSCSEG00000008556) pkhd1l1.2 (ENSCSEG00000008607) nudcd1 (ENSCSEG00000008976) ENY2 (ENSCSEG00000009001) trhrb (ENSCSEG00000009016) TMEM74 (ENSCSEG00000009039) eif3eb (ENSCSEG00000009047) pleca (ENSCSEG00000009105) ENSCSEG00000009393 ENSCSEG00000009400 ENSCSEG00000009415 ENSCSEG00000009464 slc52a2 (ENSCSEG00000009476) ENSCSEG00000009489 nfatc1 (ENSCSEG00000009516) Turbot DUPLICATION Turbot MODERN SPECIES 16 ggnbp2 (ENSSMAG00000000327) pigw (ENSSMAG00000000328) MYO19 (ENSSMAG00000000332) znhit3 (ENSSMAG00000034762) nupr1a (ENSSMAG00000000346) vkorc1l1 (ENSSMAG00000000351) ENSSMAG00000000354 ca4a (ENSSMAG00000000365) MTMR4 (ENSSMAG00000000372) hpda (ENSSMAG00000000394) ENSSMAG00000000408 ENSSMAG00000000413 supt4h1 (ENSSMAG00000037724) ENSSMAG00000000427 ENSSMAG00000000445 ##22 ENSSMAG00000000452 ##22 ENSSMAG00000022653 hspb1 (ENSSMAG00000000460) ENSSMAG00000000472 ENSSMAG00000000485 c1qbp (ENSSMAG00000000492) ENSSMAG00000000497 p2rx1 (ENSSMAG00000000512) camkk1a (ENSSMAG00000000541) ATP2A3 (ENSSMAG00000000561) ZZEF1 (ENSSMAG00000000586) cyb5d2 (ENSSMAG00000000640) ankfy1 (ENSSMAG00000000642) ube2g1a (ENSSMAG00000000657) SPNS2 (ENSSMAG00000000663) ruvbl2 (ENSSMAG00000021893) Turbot MODERN SPECIES 14 ENSSMAG00000018446 ENSSMAG00000018455 ENSSMAG00000018483 ENSSMAG00000018504 ENSSMAG00000018541 ENSSMAG00000018542 ENSSMAG00000018546 ENSSMAG00000024166 ENSSMAG00000018570 ENSSMAG00000018640 ENSSMAG00000018668 ENSSMAG00000018727 DPY19L4 (ENSSMAG00000018787) ENSSMAG00000018797 CCNE2 (ENSSMAG00000018828) ENSSMAG00000018863 ##22 gdf6b (ENSSMAG00000034246) pkhd1l1.2 (ENSSMAG00000018962) ENY2 (ENSSMAG00000019149) nudcd1 (ENSSMAG00000019172) trhrb (ENSSMAG00000019186) TMEM74 (ENSSMAG00000029795) eif3eb (ENSSMAG00000019198) pleca (ENSSMAG00000019256) ENSSMAG00000037956 ENSSMAG00000019596 ENSSMAG00000019614 slc52a2 (ENSSMAG00000019620) ENSSMAG00000019634 nfatc1 (ENSSMAG00000019637) atp9b (ENSSMAG00000019670) Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000183145.C ##22 Northern pike MODERN SPECIES 9 pleca (ENSELUG00000018494) TMEM74 (ENSELUG00000010832) ENSELUG00000010814 trhrb (ENSELUG00000010802) nudcd1 (ENSELUG00000010779) eny2 (ENSELUG00000010747) gdf6b (ENSELUG00000010711) lrp12 (ENSELUG00000010699) ENSELUG00000031189 DPY19L4 (ENSELUG00000008483) ENSELUG00000034134 ENSELUG00000008394 ENSELUG00000008373 ints8 (ENSELUG00000008666) ENSELUG00000025297 ENSELUG00000008533 ##22 Salmoninae ANCESTRAL SPECIES 1292 ENSGT00390000007776 ENSGT00950000183145.C ##22 ENSGT00940000162108.a #25 Huchen MODERN SPECIES 72 nudcd1 (ENSHHUG00000035833) ENSHHUG00000035817 ##22 ZFPM2 (ENSHHUG00000035802) lrp12 (ENSHHUG00000035791) ENSHHUG00000035761 ENSHHUG00000035756 ndufv1 (ENSHHUG00000035750) ENSHHUG00000035747 ENSHHUG00000035740 ENSHHUG00000035738 ENSHHUG00000035729 ENSHHUG00000035726 znf687b (ENSHHUG00000035721) PSMD4 (ENSHHUG00000035707) ubap2l (ENSHHUG00000035629) ENSHHUG00000035616 ENSHHUG00000035601 Salmoninae_a ANCESTRAL SPECIES 139 ENSGT00940000165835.b.f ENSGT00730000111056.h.e ENSGT00940000158616.k.b ENSGT00940000155256.d.b.b.b ENSGT00950000182894.D.f ENSGT00940000160704.a.b ENSGT00940000157244.a.a ENSGT00390000007227.a.i ENSGT00940000160991.b.c.a ENSGT00390000018560.a.a.a.a.b.j.b ENSGT00940000171486.B ENSGT00940000157616.j.a.d ENSGT00940000162855.a.b ENSGT00940000162855.a.a.a.b.d ENSGT00390000007776 ENSGT00950000183145.C ##22 ENSGT00940000162108.a #25 Salmo ANCESTRAL SPECIES 125 ENSGT00940000165835.b.f ENSGT00730000111056.h.e ENSGT00940000158616.k.b ENSGT00940000155256.d.b.b.b ENSGT00950000182894.D.f ENSGT00940000160704.a.b ENSGT00940000157244.a.a ENSGT00390000007227.a.i ENSGT00940000160991.b.c.a ENSGT00390000018560.a.a.a.a.b.j.b ENSGT00940000171486.B ENSGT00940000157616.j.a.d ENSGT00940000162855.a.b ENSGT00940000162855.a.a.a.b.d ENSGT00390000007776 ENSGT00950000183145.C ##22 Atlantic salmon MODERN SPECIES 5 ENSSSAG00000118424 ENSSSAG00000039231 ENSSSAG00000039714 ENSSSAG00000040032 apoa1bp (ENSSSAG00000042880) ENSSSAG00000042887 ENSSSAG00000042912 ENSSSAG00000105704 ENSSSAG00000083470 ENSSSAG00000042963 ENSSSAG00000100073 ENSSSAG00000110063 ENSSSAG00000045559 ENSSSAG00000082337 ENSSSAG00000072561 ENSSSAG00000072574 ##22 ENSSSAG00000072580 ENSSSAG00000072588 ENSSSAG00000096527 ENSSSAG00000101611 ENSSSAG00000112416 ENSSSAG00000007200 colec12 (ENSSSAG00000010233) ENSSSAG00000098040 ENSSSAG00000090866 rabggtb (ENSSSAG00000006139) acadm (ENSSSAG00000006268) ENSSSAG00000040446 hectd3 (ENSSSAG00000006655) ENSSSAG00000077776 ENSSSAG00000097561 River trout MODERN SPECIES 29 lipea (ENSSTUG00000035734) SLC9A3 (ENSSTUG00000035842) ago3b (ENSSTUG00000036333) tekt2 (ENSSTUG00000037868) usf2 (ENSSTUG00000037986) LMNA (ENSSTUG00000038075) naxe (ENSSTUG00000038132) ENSSTUG00000038147 scn1bb (ENSSTUG00000038164) ENSSTUG00000038181 ENSSTUG00000038184 nfatc1 (ENSSTUG00000038206) ENSSTUG00000038234 pleca (ENSSTUG00000038313) nudcd1 (ENSSTUG00000039190) ENSSTUG00000039201 ##22 Oncorhynchus DUPLICATION Oncorhynchus ANCESTRAL SPECIES 869 ENSGT00950000183145.C.m ##22 ENSGT00940000162108.a #25 Rainbow trout MODERN SPECIES 3 ENSOMYG00000009876 vkorc1l1 (ENSOMYG00000009766) ENSOMYG00000009305 ca4a (ENSOMYG00000009115) ENSOMYG00000051523 ENSOMYG00000060697 ENSOMYG00000008948 ENSOMYG00000068552 ENSOMYG00000073587 ENSOMYG00000008674 ENSOMYG00000008666 ENSOMYG00000074898 ENSOMYG00000057251 ENSOMYG00000008554 ENSOMYG00000059436 ENSOMYG00000056126 ##22 ENSOMYG00000012450 #25 YWHAG (ENSOMYG00000008503) ENSOMYG00000008495 hspb1 (ENSOMYG00000008479) ENSOMYG00000069715 SRRM3 (ENSOMYG00000008446) ENSOMYG00000008345 ENSOMYG00000008146 c1qbp (ENSOMYG00000008118) ENSOMYG00000008079 p2rx1 (ENSOMYG00000007959) camkk1a (ENSOMYG00000007760) ATP2A3 (ENSOMYG00000006908) ZZEF1 (ENSOMYG00000004390) ENSOMYG00000034806 Oncorhynchus DUPLICATION Oncorhynchus ANCESTRAL SPECIES 3 ENSGT00940000161462.f ENSGT00930000151038.i.a ENSGT00390000017282.c.b ENSGT00940000154607.b.a.t ENSGT00940000159740.f ENSGT00730000112261.e ENSGT00940000164400.e ENSGT00940000156934.l.d ENSGT00530000063829.A.g ENSGT00940000164400.f ENSGT00940000156934.l.c ENSGT00530000063829.A.h ENSGT01030000234566.e.a.m ENSGT00510000048688.j ENSGT00940000156408.j.a ENSGT00950000183145.C.n.a ##22 ENSGT00940000162108.b.b.b #25 ENSGT01000000220550 ENSGT00510000051337.g.b.b ENSGT00940000167743.f ENSGT00390000004886.e ENSGT00390000017671.a.b.c ENSGT01010000230102 ENSGT00940000153195.B.o ENSGT01000000220276 ENSGT00650000094921.b ENSGT00940000155892.l ENSGT00390000018500.b.b.a.d.a ENSGT00940000156679.c.a ENSGT00390000017724.a.a.p ENSGT00940000156485.p Oncorhynchus_a ANCESTRAL SPECIES 765 ENSGT00940000156408.j.a ENSGT00950000183145.C.n.a ##22 Chinook salmon MODERN SPECIES 22 ENSOTSG00005020505 ARHGEF2 (ENSOTSG00005020515) ENSOTSG00005021290 ENSOTSG00005021301 pmvk (ENSOTSG00005022543) decr1 (ENSOTSG00005022544) CALB1 (ENSOTSG00005022545) pnp4b (ENSOTSG00005022618) ENSOTSG00005022619 ENSOTSG00005022620 aldh5a1 (ENSOTSG00005022622) dek (ENSOTSG00005023126) KCNV1 (ENSOTSG00005023127) gbp (ENSOTSG00005023128) plekhf2 (ENSOTSG00005023131) ENSOTSG00005023132 ##22 ENSOTSG00005023134 ENSOTSG00005023135 ENSOTSG00005023137 snrnp48 (ENSOTSG00005023144) herpud2 (ENSOTSG00005023145) ENSOTSG00005000126 bms1 (ENSOTSG00005000483) ENSOTSG00005000517 capn7 (ENSOTSG00005000519) sh3bp5b (ENSOTSG00005000529) mettl6 (ENSOTSG00005000533) eaf1 (ENSOTSG00005000539) bmper (ENSOTSG00005000550) tbx20 (ENSOTSG00005000703) dpy19l1l (ENSOTSG00005000708) Oncorhynchus ANCESTRAL SPECIES 40 ENSGT00940000158616.k.b ENSGT00940000155256.d.b.b.b ENSGT00950000182894.D.f ENSGT00990000203527.b ENSGT00990000203527.a.a.a.e.b ENSGT00940000160704.a.b ENSGT00940000157244.a.a ENSGT00390000007227.a.i ENSGT00940000160991.b.c.a ENSGT00390000018560.a.a.a.a.b.j.b ENSGT00940000171486.B ENSGT00940000157616.j.a.d ENSGT00940000162855.a.b ENSGT00940000162855.a.a.a.b.d ENSGT00390000007776 ENSGT00950000183145.C.n.b ##22 Rainbow trout MODERN SPECIES 24 ENSOMYG00000049581 ENSOMYG00000063528 ENSOMYG00000070084 ENSOMYG00000006026 ENSOMYG00000011062 ENSOMYG00000057609 ENSOMYG00000069899 ENSOMYG00000028078 ENSOMYG00000070995 ENSOMYG00000042866 ENSOMYG00000064041 ENSOMYG00000057896 ENSOMYG00000005924 ENSOMYG00000070589 ENSOMYG00000048886 ENSOMYG00000068104 ##22 ENSOMYG00000005875 ENSOMYG00000061489 ENSOMYG00000053086 Oncorhynchus_a ANCESTRAL SPECIES 96 ENSGT00940000158616.k.b ENSGT00940000155256.d.b.b.b ENSGT00950000182894.D.f ENSGT00990000203527.b ENSGT00990000203527.a.a.a.e.b ENSGT00940000160704.a.b ENSGT00940000157244.a.a ENSGT00390000007227.a.i ENSGT00940000160991.b.c.a ENSGT00390000018560.a.a.a.a.b.j.b ENSGT00940000171486.B ENSGT00940000157616.j.a.d ENSGT00940000162855.a.b ENSGT00940000162855.a.a.a.b.d ENSGT00390000007776 ENSGT00950000183145.C.n.b ##22 Coho salmon MODERN SPECIES 5 ENSOKIG00005028344 lipea (ENSOKIG00005028637) SLC9A3 (ENSOKIG00005028753) ago3b (ENSOKIG00005029298) tekt2 (ENSOKIG00005033761) usf2 (ENSOKIG00005033816) LMNA (ENSOKIG00005033932) naxe (ENSOKIG00005034017) ENSOKIG00005034033 SCN1B (ENSOKIG00005034056) ENSOKIG00005034070 NFATC1 (ENSOKIG00005034093) ENSOKIG00005034202 pleca (ENSOKIG00005034467) nudcd1 (ENSOKIG00005036764) ENSOKIG00005036841 ##22 crabp2b (ENSOKIG00005004269) ciarta (ENSOKIG00005004335) rprd2a (ENSOKIG00005004354) celf3a (ENSOKIG00005004421) cers2a (ENSOKIG00005004568) CLK2 (ENSOKIG00005004660) ENSOKIG00005005339 dnajc8 (ENSOKIG00005005373) HNRNPR (ENSOKIG00005005911) ENSOKIG00005006097 ADGRB1 (ENSOKIG00005006116) HERPUD2 (ENSOKIG00005006148) SLC4A7 (ENSOKIG00005006260) EOMES (ENSOKIG00005006754) ENSOKIG00005006776 Chinook salmon MODERN SPECIES 24 lipea (ENSOTSG00005004221) ENSOTSG00005004222 SLC9A3 (ENSOTSG00005004232) ago3b (ENSOTSG00005004739) tekt2 (ENSOTSG00005010547) usf2 (ENSOTSG00005010551) LMNA (ENSOTSG00005010591) naxe (ENSOTSG00005010675) ENSOTSG00005010681 scn1bb (ENSOTSG00005010684) ENSOTSG00005010687 sall3b (ENSOTSG00005010691) nfatc1 (ENSOTSG00005010695) pleca (ENSOTSG00005010762) nudcd1 (ENSOTSG00005044911) ENSOTSG00005044912 ##22 ENSOTSG00005044915 Otomorpha ANCESTRAL SPECIES 9 ENSGT00950000183163.a.a.bb ENSGT00950000182941.a.a.b.e.b ENSGT00390000011598 ENSGT00390000015257 ENSGT00950000183028.a.b.b ENSGT00390000017974.ob ENSGT01090000260070.C.b ENSGT00940000154450.tc ENSGT00940000164147.b ENSGT00940000156338.b ENSGT00390000014274 ENSGT00940000157751 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a ENSGT00940000157071 Otophysi ANCESTRAL SPECIES 260 ENSGT00940000163253.a.a.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a ENSGT00940000157071 ENSGT00940000159356.a.b Cyprinoidei ANCESTRAL SPECIES 25 ENSGT00510000048725 ENSGT00940000157911 ENSGT00940000155519.qb.a ENSGT01030000235108 ENSGT00940000160525 ENSGT00390000017282 ENSGT00940000159740 ENSGT00730000112261 ENSGT00940000164400 ENSGT00940000156934.l ENSGT00530000063829.A ENSGT01030000234566.e.a ENSGT00510000048688 ENSGT01050000244937.b ENSGT00940000156408 ENSGT00950000183145.C ##22 ENSGT00390000006173 ENSGT00940000156679 ENSGT00940000157815.a ENSGT01030000234912.a ENSGT00390000018131 ENSGT00940000165475 ENSGT00510000047616.b ENSGT00940000157131.b ENSGT00940000157527.a ENSGT00940000155488.m.b.a.b.a ENSGT00940000157880.g.a ENSGT00390000003114.e.b.b ENSGT00390000001296 ENSGT00390000012690.a ENSGT00940000155721.b.b Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 701 ENSGT00390000017282.b ENSGT00940000159740.d ENSGT00730000112261.a.b ENSGT00940000164400.b ENSGT00940000156934.l.b ENSGT00530000063829.A.e ENSGT01030000234566.e.a.k ENSGT00510000048688.k ENSGT00940000156408.l ENSGT00950000183145.C.o ##22 ENSGT00390000006173.a.b ENSGT00940000157815.a.b Cyprininae_a ANCESTRAL SPECIES 264 ENSGT00940000155519.qb.a.a ENSGT00940000160525.`b ENSGT01010000222294.c.a.ib.b.b ENSGT00940000157687.a.b ENSGT01030000234856 ENSGT00940000158130.i.b ENSGT00390000017282.b ENSGT00940000159740.d ENSGT00730000112261.a.b ENSGT00940000164400.b ENSGT00940000156934.l.b ENSGT00530000063829.A.e ENSGT01030000234566.e.a.k ENSGT00510000048688.k ENSGT00940000156408.l ENSGT00950000183145.C.o ##22 ENSGT00390000006173.a.b ENSGT00940000157815.a.b Common carp reference MODERN SPECIES 2 cmtm6 (ENSCCRG00000071916) ENSCCRG00000024902 ENSCCRG00000014829 sc:d156 (ENSCCRG00000033047) ptpn23a (ENSCCRG00000063956) ENSCCRG00000031389 dek (ENSCCRG00000014677) ENSCCRG00000056963 gbp (ENSCCRG00000071487) ENSCCRG00000014685 ccne2 (ENSCCRG00000078618) tp53inp1 (ENSCCRG00000061054) nagpa (ENSCCRG00000002663) NDUFAF6 (ENSCCRG00000002685) plekhf2 (ENSCCRG00000069352) ENSCCRG00000002744 ##22 ENSCCRG00000079847 rspo3 (ENSCCRG00000073816) ENSCCRG00000065107 cenpw (ENSCCRG00000060394) trmt11 (ENSCCRG00000011438) ENSCCRG00000076658 hint3 (ENSCCRG00000003817) rbms3 (ENSCCRG00000069859) TGFBR2 (ENSCCRG00000007325) stt3b (ENSCCRG00000029252) OSBPL10 (ENSCCRG00000073296) gpd1l (ENSCCRG00000030522) tmem42a (ENSCCRG00000065066) zgc:77056 (ENSCCRG00000008222) zdhhc3a (ENSCCRG00000052289) Goldfish MODERN SPECIES 35 mios (ENSCARG00000052288) ENSCARG00000052520 slc25a32b (ENSCARG00000052804) CTHRC1 (ENSCARG00000052835) CSMD3 (ENSCARG00000052896) EIF3H (ENSCARG00000053281) rad21a (ENSCARG00000053459) dnali1 (ENSCARG00000053630) SNIP1 (ENSCARG00000053687) ENSCARG00000053726 ccne2 (ENSCARG00000053887) tp53inp1 (ENSCARG00000053899) nagpa (ENSCARG00000053947) NDUFAF6 (ENSCARG00000053995) plekhf2 (ENSCARG00000054099) ENSCARG00000054108 ##22 ENSCARG00000054153 rspo3 (ENSCARG00000054170) ENSCARG00000054187 trmt11 (ENSCARG00000054211) ENSCARG00000054317 hint3 (ENSCARG00000054332) rbms3 (ENSCARG00000054410) TGFBR2 (ENSCARG00000055298) ENSCARG00000055375 ENSCARG00000055400 ENSCARG00000055444 rab42b (ENSCARG00000055462) taf12 (ENSCARG00000055487) ctps1b (ENSCARG00000055537) ENSCARG00000055671 Cyprininae ANCESTRAL SPECIES 81 ENSGT00940000157911.ab ENSGT00940000155519.qb.a.b ENSGT01010000222294.c.a.ib.b.a ENSGT00940000157687.a.a ENSGT00940000158130.i.a ENSGT00390000017282.a.a ENSGT00940000159740.c ENSGT00730000112261.a.a ENSGT00940000164400.a ENSGT00940000156934.l.a ENSGT00530000063829.A.f ENSGT01030000234566.e.a.l ENSGT00510000048688.l ENSGT01050000244937.b ENSGT00940000156408.k ENSGT00950000183145.C.p ##22 ENSGT00390000006173.a.a ENSGT00940000156679 ENSGT00940000157815.a.a ENSGT01030000234912.a ENSGT00390000018131.a ENSGT00940000165475.c ENSGT00510000047616.b.d ENSGT00940000157131.b.b ENSGT00940000157527.a.h ENSGT00940000155488.m.b.a.a ENSGT00940000157880.g.a.d ENSGT00390000003114.e.b.b.b ENSGT00390000001296 ENSGT00390000012690.a ENSGT00940000155721.b.b.a Goldfish MODERN SPECIES 7 cmtm6 (ENSCARG00000032468) ENSCARG00000032486 sc:d156 (ENSCARG00000032526) ptpn23a (ENSCARG00000032591) SCAP (ENSCARG00000032711) ENSCARG00000032855 dek (ENSCARG00000032868) KCNV1 (ENSCARG00000032937) gbp (ENSCARG00000032946) ENSCARG00000032963 ccne2 (ENSCARG00000032990) tp53inp1 (ENSCARG00000001955) nagpa (ENSCARG00000001968) NDUFAF6 (ENSCARG00000002022) plekhf2 (ENSCARG00000002071) ENSCARG00000002082 ##22 ENSCARG00000002112 mettl6 (ENSCARG00000002134) rspo3 (ENSCARG00000002150) ENSCARG00000002172 trmt11 (ENSCARG00000002226) ENSCARG00000002298 hint3 (ENSCARG00000002304) rbms3 (ENSCARG00000002375) TGFBR2 (ENSCARG00000002642) stt3b (ENSCARG00000002725) OSBPL10 (ENSCARG00000003468) gpd1l (ENSCARG00000003478) zgc:77056 (ENSCARG00000003492) zdhhc3a (ENSCARG00000003501) ebag9 (ENSCARG00000003513) Zebrafish MODERN SPECIES 7 sc:d156 (ENSDARG00000076539) ENSDARG00000094928 ptpn23a (ENSDARG00000070124) SCAP (ENSDARG00000018096) ENSDARG00000090670 dek (ENSDARG00000070108) KCNV1 (ENSDARG00000070092) gbp (ENSDARG00000040059) ENSDARG00000102445 ccne2 (ENSDARG00000098529) tp53inp1 (ENSDARG00000028017) nagpa (ENSDARG00000075149) NDUFAF6 (ENSDARG00000053652) ENSDARG00000078204 plekhf2 (ENSDARG00000021141) ENSDARG00000075723 ##22 mettl6 (ENSDARG00000070085) rspo3 (ENSDARG00000070081) ENSDARG00000112132 ENSDARG00000114610 ENSDARG00000100910 cenpw (ENSDARG00000092136) trmt11 (ENSDARG00000040033) ENSDARG00000087388 hint3 (ENSDARG00000074286) rbms3 (ENSDARG00000044574) tgfbr2b (ENSDARG00000034541) ENSDARG00000113139 stt3b (ENSDARG00000001890) OSBPL10 (ENSDARG00000040027) gpd1l (ENSDARG00000040024) Characiphysae ANCESTRAL SPECIES 172 ENSGT00940000163253.a.a.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e ENSGT00390000002661.b.ub.a ENSGT00940000162855.a.a.a.b ENSGT00940000162855.a.b ENSGT00390000009358 ENSGT00400000024940 ENSGT00390000003774.b ENSGT00390000003774.a.a.c ENSGT00940000157616.j.a ENSGT00940000157071 ENSGT00940000159356.a.b Channel catfish DUPLICATION Channel catfish MODERN SPECIES 11 ENSIPUG00000010807 rpl3 (ENSIPUG00000010685) cacng2a (ENSIPUG00000010668) ENSIPUG00000010660 rpl23 (ENSIPUG00000010633) ccdc103 (ENSIPUG00000010622) FAM187A (ENSIPUG00000010618) abi3a (ENSIPUG00000010559) Mpp2 (ENSIPUG00000010516) pyya (ENSIPUG00000010498) hspb9 (ENSIPUG00000010493) ENSIPUG00000010454 ##22 ENSIPUG00000010432 ENSIPUG00000010403 ##22 ENSIPUG00000010383 ##22 ENSIPUG00000010370 ##22 ENSIPUG00000010236 ENSIPUG00000010217 ENSIPUG00000010206 ENSIPUG00000010190 ##22 ENSIPUG00000010176 ##22 ENSIPUG00000010162 ##22 ENSIPUG00000010132 aoc2 (ENSIPUG00000010118) slc25a39 (ENSIPUG00000010088) rpl27 (ENSIPUG00000010054) rundc1 (ENSIPUG00000010030) ENSIPUG00000009927 ifi35 (ENSIPUG00000009902) BCAT1 (ENSIPUG00000009853) hsd17b14 (ENSIPUG00000009835) Channel catfish MODERN SPECIES 16 ENSIPUG00000001625 ENSIPUG00000001649 tmem54 (ENSIPUG00000001661) hpca (ENSIPUG00000001669) nt5c1aa (ENSIPUG00000001699) stk3 (ENSIPUG00000001766) rida (ENSIPUG00000001793) rpl30 (ENSIPUG00000001810) Laptm4b (ENSIPUG00000001831) mtdh (ENSIPUG00000001853) rrm2b (ENSIPUG00000001867) AZIN1 (ENSIPUG00000001874) ENSIPUG00000001889 ints8 (ENSIPUG00000001910) CCNE2 (ENSIPUG00000001954) ENSIPUG00000001966 ##22 gdf6b (ENSIPUG00000001980) pkhd1l1.2 (ENSIPUG00000002034) nudcd1 (ENSIPUG00000002139) trhrb (ENSIPUG00000002162) TMEM74 (ENSIPUG00000002171) eif3eb (ENSIPUG00000002187) pleca (ENSIPUG00000002350) fbxl6 (ENSIPUG00000002871) ENSIPUG00000002886 SLC52A1 (ENSIPUG00000002893) rft2 (ENSIPUG00000002914) nfatc1 (ENSIPUG00000002936) atp9b (ENSIPUG00000002960) sall3b (ENSIPUG00000003006) GALR1 (ENSIPUG00000003021) Characiphysae_b ANCESTRAL SPECIES 2 ENSGT00950000183108.b.a.b ENSGT00950000182991.A.a.c.a.b ENSGT00390000014242.l ENSGT00940000161462 ENSGT00930000151038 ENSGT00390000017282 ENSGT00940000159740 ENSGT00730000112261 ENSGT00940000164400 ENSGT00940000156934.l ENSGT00530000063829.A ENSGT01030000234566.e.a ENSGT00510000048688 ENSGT01050000244937.b ENSGT00940000156408 ENSGT00950000183145.C ##22 ENSGT00390000006173 ENSGT00510000051337 ENSGT00940000167743 ENSGT00390000004886 ENSGT00390000016225 ENSGT01030000235163 ENSGT00940000155619.j.a ENSGT00940000155892 ENSGT00390000018500.b.b.a ENSGT00940000156679 ENSGT00940000167456 ENSGT00940000157432.B.c ENSGT00940000169325 ENSGT00390000009631 ENSGT00650000093438 Characoidei ANCESTRAL SPECIES 172 ENSGT00950000183108.b.a.b ENSGT00950000182991.A.a.c.a.b ENSGT00390000014242.l ENSGT00940000161462 ENSGT00930000151038 ENSGT00390000017282 ENSGT00940000159740 ENSGT00730000112261 ENSGT00940000164400 ENSGT00940000156934.l ENSGT00530000063829.A ENSGT01030000234566.e.a ENSGT00510000048688 ENSGT01050000244937.b ENSGT00940000156408 ENSGT00950000183145.C ##22 ENSGT00390000006173 ENSGT00510000051337 ENSGT00940000167743 ENSGT00390000004886 ENSGT00390000016225 ENSGT00940000155619.j.a ENSGT00940000155892 ENSGT00390000018500.b.b.a ENSGT00940000156679 Red-bellied piranha MODERN SPECIES 231 pnp4b (ENSPNAG00000022141) ENSPNAG00000022162 KIAA0319 (ENSPNAG00000022182) aldh5a1 (ENSPNAG00000022230) dek (ENSPNAG00000022282) KCNV1 (ENSPNAG00000004715) gbp (ENSPNAG00000022333) ENSPNAG00000022471 ccne2 (ENSPNAG00000022486) tp53inp1 (ENSPNAG00000022509) ENSPNAG00000022523 nagpa (ENSPNAG00000022544) NDUFAF6 (ENSPNAG00000022572) ENSPNAG00000022579 plekhf2 (ENSPNAG00000022588) ENSPNAG00000022634 ##22 ENSPNAG00000022675 ENSPNAG00000022687 zgc:113232 (ENSPNAG00000022769) snrnp48 (ENSPNAG00000022828) PIK3R4 (ENSPNAG00000003747) ENSPNAG00000022984 capn7 (ENSPNAG00000023104) sh3bp5b (ENSPNAG00000023118) mettl6 (ENSPNAG00000023163) Electric eel DUPLICATION Electric eel MODERN SPECIES 2009 ENSEEEG00000000343 ##22 Electric eel MODERN SPECIES 504 nkiras1 (ENSEEEG00000022812) rpl15 (ENSEEEG00000022809) nr1d2b (ENSEEEG00000022807) thrb (ENSEEEG00000022743) RARB (ENSEEEG00000022733) top2b (ENSEEEG00000022197) ngly1 (ENSEEEG00000022154) nutf2l (ENSEEEG00000022152) adnp2b (ENSEEEG00000022149) txnl4a (ENSEEEG00000022148) ENSEEEG00000022147 ints8 (ENSEEEG00000022138) CCNE2 (ENSEEEG00000022127) ENSEEEG00000022124 ##22 Clupeiformes ANCESTRAL SPECIES 357 ENSGT00940000160798 ENSGT00940000155188.A ENSGT00940000155565.b ENSGT00940000161047 ENSGT00530000063023.A.b ENSGT00390000007597 ENSGT00940000156934.k ENSGT00950000183145.C ##22 ENSGT00940000160140.a.a ENSGT00940000157594 ENSGT00390000011748.ab ENSGT00390000007776 ENSGT01100000263484.B.b.b.a.a ENSGT00530000063880.b.e Denticle herring MODERN SPECIES 12 ENSDCDG00000020098 ENSDCDG00000020091 ENSDCDG00000020082 ENSDCDG00000020073 dhrs12 (ENSDCDG00000020069) GBP2 (ENSDCDG00000020065) eif3eb (ENSDCDG00000020045) ENSDCDG00000020034 ENSDCDG00000020032 ENSDCDG00000020015 ENSDCDG00000019999 ENSDCDG00000019995 psmb10 (ENSDCDG00000019992) DPY19L4 (ENSDCDG00000019743) CCNE2 (ENSDCDG00000019633) ENSDCDG00000019628 ##22 gdf6b (ENSDCDG00000019622) ENY2 (ENSDCDG00000019619) nudcd1 (ENSDCDG00000019603) trhrb (ENSDCDG00000019598) TMEM74 (ENSDCDG00000019597) ENSDCDG00000019594 lgals17 (ENSDCDG00000019584) VPS52 (ENSDCDG00000019535) rps18 (ENSDCDG00000019506) RING1 (ENSDCDG00000019489) slc39a7 (ENSDCDG00000019481) TRAPPC9 (ENSDCDG00000019463) kcnk9 (ENSDCDG00000019437) COL22A1 (ENSDCDG00000019430) FAM135B (ENSDCDG00000019383) Atlantic herring DUPLICATION Atlantic herring MODERN SPECIES 16 ENSCHAG00000009681 PARP11 (ENSCHAG00000009689) METRNL (ENSCHAG00000009699) ENSCHAG00000009702 ENSCHAG00000009711 ENSCHAG00000009717 ENSCHAG00000009731 ##22 ENSCHAG00000009778 ENSCHAG00000009792 ENSCHAG00000009820 ENSCHAG00000009832 ENSCHAG00000009843 ENSCHAG00000009867 ENSCHAG00000009890 ENSCHAG00000009917 ENSCHAG00000009962 ##22 ENSCHAG00000009991 ENSCHAG00000010041 ENSCHAG00000010066 ENSCHAG00000010101 ENSCHAG00000010116 ENSCHAG00000010134 ENSCHAG00000010160 ENSCHAG00000010186 ENSCHAG00000010195 ENSCHAG00000010207 ENSCHAG00000010232 ENSCHAG00000010252 ENSCHAG00000010334 ENSCHAG00000010346 ENSCHAG00000010382 Atlantic herring MODERN SPECIES 10 ptp4a2b (ENSCHAG00000006473) ENSCHAG00000006537 ENSCHAG00000006581 ENSCHAG00000006606 ENSCHAG00000006743 col9a2 (ENSCHAG00000006760) atp5if1a (ENSCHAG00000006792) ENSCHAG00000006821 ENSCHAG00000006924 ENSCHAG00000006949 ENSCHAG00000000559 psmb10 (ENSCHAG00000000659) DPY19L4 (ENSCHAG00000001096) ints8 (ENSCHAG00000001734) CCNE2 (ENSCHAG00000002021) ENSCHAG00000002102 ##22 gdf6b (ENSCHAG00000002150) atxn1a (ENSCHAG00000002466) gmpr (ENSCHAG00000002578) thrb (ENSCHAG00000003500) RARB (ENSCHAG00000004943) top2b (ENSCHAG00000005470) ngly1 (ENSCHAG00000010610) OXSM (ENSCHAG00000010728) SEPTIN7 (ENSCHAG00000010779) eepd1 (ENSCHAG00000012590) MATCAP2 (ENSCHAG00000012641) anln (ENSCHAG00000012650) ENSCHAG00000012707 ccdc126 (ENSCHAG00000012713) tra2a (ENSCHAG00000012717) Spotted gar DUPLICATION Spotted gar MODERN SPECIES 671 ENSLOCG00000001738 ENSLOCG00000001755 ENSLOCG00000001762 lig1 (ENSLOCG00000001777) ENSLOCG00000001796 ENSLOCG00000001813 ENSLOCG00000001844 ENSLOCG00000001856 NCSTN (ENSLOCG00000001868) copa (ENSLOCG00000001891) ENSLOCG00000001928 ENSLOCG00000001944 ENSLOCG00000001960 ENSLOCG00000001976 ENSLOCG00000002030 ENSLOCG00000002044 ##22 MYADM (ENSLOCG00000018221) ENSLOCG00000002063 ENSLOCG00000002075 ENSLOCG00000002099 casq1b (ENSLOCG00000002107) ENSLOCG00000018222 PEA15 (ENSLOCG00000002124) ENSLOCG00000002131 ENSLOCG00000002147 ENSLOCG00000002167 ENSLOCG00000002194 ENSLOCG00000002211 ENSLOCG00000002218 ENSLOCG00000002234 ENSLOCG00000002245 #22 Spotted gar MODERN SPECIES 647 gdi1 (ENSLOCG00000015477) ENSLOCG00000015482 tafazzin (ENSLOCG00000015485) atp6ap1a (ENSLOCG00000015488) dnase1l1 (ENSLOCG00000015492) dnase1l1l (ENSLOCG00000015497) rpl10 (ENSLOCG00000015500) ENSLOCG00000015504 FLNA (ENSLOCG00000015505) si:ch211-150o23.2 (ENSLOCG00000015513) ENSLOCG00000017984 ENSLOCG00000015515 ##22 bgna (ENSLOCG00000015519) si:dkey-6n6.1 (ENSLOCG00000015522) tnnc1b (ENSLOCG00000015523) ENSLOCG00000015526 ##22 ENSLOCG00000015527 ENSLOCG00000015529 dedd (ENSLOCG00000015531) cfap126 (ENSLOCG00000015532) ENSLOCG00000015533 DUSP9 (ENSLOCG00000015534) ccnq (ENSLOCG00000015536) atp2b3a (ENSLOCG00000015538) HAUS7 (ENSLOCG00000015550) ENSLOCG00000015554 ENSLOCG00000015557 ENSLOCG00000015558 ENSLOCG00000015560 tktb (ENSLOCG00000015562) ENSLOCG00000015565 Spotted gar MODERN SPECIES 675 ENSLOCG00000008235 SSH3 (ENSLOCG00000008248) ANKRD13D (ENSLOCG00000008259) kdm2aa (ENSLOCG00000008268) ENSLOCG00000008279 ENSLOCG00000008291 ENSLOCG00000008300 ENSLOCG00000008311 ENSLOCG00000008320 CLCF1 (ENSLOCG00000008329) ssrp1a (ENSLOCG00000008342) ENSLOCG00000008356 ENSLOCG00000008366 LRRC24 (ENSLOCG00000008376) ENSLOCG00000008387 ENSLOCG00000008396 ##22 ENSLOCG00000008408 ENSLOCG00000008417 ENSLOCG00000008428 them6 (ENSLOCG00000008438) C8orf82 (ENSLOCG00000008450) ARHGAP39 (ENSLOCG00000008461) gfus.1 (ENSLOCG00000008481) bmb (ENSLOCG00000008496) pycr3 (ENSLOCG00000008510) EEF1D (ENSLOCG00000008527) ENSLOCG00000008541 ENSLOCG00000008578 RHPN1 (ENSLOCG00000008592) mafaa (ENSLOCG00000018124) ZC3H3 (ENSLOCG00000008621) Spotted gar MODERN SPECIES 649 brd9 (ENSLOCG00000008095) trip13 (ENSLOCG00000008122) NKD2 (ENSLOCG00000008140) ENSLOCG00000008155 lrrc14b (ENSLOCG00000008169) si:ch211-269k10.5 (ENSLOCG00000008189) uqcrb (ENSLOCG00000008199) mterf3 (ENSLOCG00000008210) ptdss1a (ENSLOCG00000008222) NHLRC1 (ENSLOCG00000018335) KIF13A (ENSLOCG00000008249) nup153 (ENSLOCG00000008267) NDUFAF6 (ENSLOCG00000008276) ENSLOCG00000018336 plekhf2 (ENSLOCG00000018337) ENSLOCG00000008287 ##22 CFAP418 (ENSLOCG00000008299) mylipb (ENSLOCG00000008309) dtnbp1a (ENSLOCG00000008322) jarid2b (ENSLOCG00000008335) zgc:136493 (ENSLOCG00000008362) pard6gb (ENSLOCG00000008371) bloc1s4 (ENSLOCG00000008379) nutf2l (ENSLOCG00000008390) adnp2b (ENSLOCG00000008400) ENSLOCG00000008411 txnl4a (ENSLOCG00000008419) ENSLOCG00000008429 SLC66A2 (ENSLOCG00000008439) KCNG2 (ENSLOCG00000008447) ctdp1 (ENSLOCG00000008457) Elephant shark DUPLICATION Elephant shark MODERN SPECIES 2071 ENSCMIG00000008901 ##22 Elephant shark MODERN SPECIES 2464 ENSCMIG00000006978 ##22 Elephant shark MODERN SPECIES 860 ENSCMIG00000003442 ##22 Vertebrata ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Cyclostomata ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Hagfish DUPLICATION Hagfish DUPLICATION Hagfish MODERN SPECIES 1465 ENSEBUG00000001054 ENSEBUG00000009599 ENSEBUG00000005701 ENSEBUG00000016569 mcm4 (ENSEBUG00000004100) ENSEBUG00000001432 ENSEBUG00000015833 ENSEBUG00000006494 ENSEBUG00000009717 fkbp9 (ENSEBUG00000014180) NT5C3B (ENSEBUG00000012808) ENSEBUG00000002231 ENSEBUG00000009030 ENSEBUG00000001937 ctnna2 (ENSEBUG00000003965) ENSEBUG00000005110 ##22 ENSEBUG00000009908 ENSEBUG00000016921 zgc:136930 (ENSEBUG00000007060) ENSEBUG00000000530 ENSEBUG00000005594 ENSEBUG00000007323 ENSEBUG00000002980 ENSEBUG00000013395 ENSEBUG00000014290 ENSEBUG00000001827 ENSEBUG00000011926 ENSEBUG00000014030 Hagfish MODERN SPECIES 989 ENSEBUG00000015207 ENSEBUG00000011728 ENSEBUG00000011764 icmt (ENSEBUG00000012389) ENSEBUG00000004287 rap1gapa (ENSEBUG00000013589) ENSEBUG00000002286 eif5a2 (ENSEBUG00000015151) taf10 (ENSEBUG00000002668) ENSEBUG00000009554 ENSEBUG00000014668 ints11 (ENSEBUG00000003190) ENSEBUG00000010981 ENSEBUG00000008380 ENSEBUG00000014387 ENSEBUG00000000419 ##22 Hagfish MODERN SPECIES 311 ENSEBUG00000015415 ENSEBUG00000014963 ENSEBUG00000011776 ENSEBUG00000014902 ENSEBUG00000005982 ENSEBUG00000008445 ENSEBUG00000016866 ##22 ENSEBUG00000011453 si:cabz01085950.1 (ENSEBUG00000004331) ENSEBUG00000003052 ENSEBUG00000015305 ENSEBUG00000005113 ENSEBUG00000012940 ENSEBUG00000005369 ENSEBUG00000002013 ENSEBUG00000004650 ENSEBUG00000007294 rab21 (ENSEBUG00000002375) tbc1d17 (ENSEBUG00000012472) nfya (ENSEBUG00000015438) ENSEBUG00000011257 Lamprey DUPLICATION Lamprey MODERN SPECIES 1443 ENSPMAG00000007723 ##22 Lamprey DUPLICATION Lamprey MODERN SPECIES 2849 ENSPMAG00000003198 ##22 Lamprey MODERN SPECIES 881 ENSPMAG00000010353 ENSPMAG00000007227 ENSPMAG00000007232 ENSPMAG00000007238 ENSPMAG00000007249 ##22 ENSPMAG00000007251 Lamprey MODERN SPECIES 5928 ENSPMAG00000008100 ##22 Gnathostomata ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Euteleostomi ANCESTRAL SPECIES 754 ENSGT00950000183145.D ##22 ENSGT01090000260061.c.a.c.a ENSGT00940000155882.a.a ENSGT00940000162625 Sarcopterygii ANCESTRAL SPECIES 676 ENSGT00950000183145.D ##22 ENSGT01090000260061.c.a.c.a ENSGT00940000155882.a.a ENSGT00940000162625 Coelacanth MODERN SPECIES 342 ENSLACG00000000202 ENSLACG00000001707 ENSLACG00000004521 ##22 YWHAG (ENSLACG00000005482) HSPB1 (ENSLACG00000007283) SRRM3 (ENSLACG00000008008) orai2 (ENSLACG00000011817) ENSLACG00000012004 ENSLACG00000012251 ENSLACG00000012518 ABHD11 (ENSLACG00000013733) ENSLACG00000013897 ENSLACG00000014293 MTMR4 (ENSLACG00000014570) hpda (ENSLACG00000015263) HSF5 (ENSLACG00000015426) RNF43 (ENSLACG00000016277) SUPT4H1 (ENSLACG00000016364) Tetrapoda ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Amniota ANCESTRAL SPECIES 10 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Mammalia ANCESTRAL SPECIES 14 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000165188 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Platypus MODERN SPECIES 7 CDC73 (ENSOANG00000002964) B3GALT2 (ENSOANG00000002965) ENSOANG00000011956 KCNT2 (ENSOANG00000049291) ENSOANG00000001407 ENSOANG00000007875 ENSOANG00000049896 ENSOANG00000044965 ENSOANG00000007864 ENSOANG00000031768 #19 PLEKHA1 (ENSOANG00000007865) #20 HTRA1 (ENSOANG00000045001) #21 ENSOANG00000002000 #22 ENSOANG00000049858 ##22 ENSOANG00000045064 #22 ENSOANG00000020984 ##22 ENSOANG00000047128 #25 CUZD1 (ENSOANG00000001997) #27 ENSOANG00000043341 #29 PSTK (ENSOANG00000001995) IKZF5 (ENSOANG00000001994) ACADSB (ENSOANG00000013324) HMX3 (ENSOANG00000037629) HMX2 (ENSOANG00000036447) BUB3 (ENSOANG00000041516) CPXM2 (ENSOANG00000038396) ENSOANG00000030444 #18 ENSOANG00000002087 #17 ATE1 (ENSOANG00000047065) #15 FGFR2 (ENSOANG00000029096) #14 WDR11 (ENSOANG00000002737) #13 Theria ANCESTRAL SPECIES 26 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Eutheria ANCESTRAL SPECIES 13 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384 #29 ENSGT00940000164044 #30 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Boreoeutheria ANCESTRAL SPECIES 16 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 Laurasiatheria ANCESTRAL SPECIES 14 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005 #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 Laurasiatheria_a ANCESTRAL SPECIES 15 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.a #25 ENSGT00940000162108.sb.b #25 ENSGT00940000165716 #26 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00940000163005.a #28 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Carnivora ANCESTRAL SPECIES 16 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.b #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00390000017384.hb #29 ENSGT00940000163005.a #28 ENSGT00390000017384.ib #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 Caniformia ANCESTRAL SPECIES 13 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT01010000224541 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.b #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00390000017384.hb #29 ENSGT00940000163005.a #28 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a Canidae ANCESTRAL SPECIES 16 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000163657 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.b #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00390000017384.hb.f #29 ENSGT00390000017384.hb.e #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Red fox MODERN SPECIES INPP5F (ENSVVUG00000011092) #9 MCMBP (ENSVVUG00000011144) #10 SEC23IP (ENSVVUG00000011215) #11 ENSVVUG00000011255 PLPP4 (ENSVVUG00000011275) #12 ENSVVUG00000011295 WDR11 (ENSVVUG00000011299) #13 FGFR2 (ENSVVUG00000011385) #14 ATE1 (ENSVVUG00000011469) #15 ENSVVUG00000011488 #16 NSMCE4A (ENSVVUG00000011499) #17 TACC2 (ENSVVUG00000011536) #18 BTBD16 (ENSVVUG00000011562) #19 PLEKHA1 (ENSVVUG00000011580) #20 HTRA1 (ENSVVUG00000011603) #21 ENSVVUG00000011630 ##22 ENSVVUG00000011639 #22 ENSVVUG00000011643 #22 Artiodactyla ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Artiodactyla_a ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Artiodactyla_b ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Pecora ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Yarkand deer MODERN SPECIES 6 SEC23IP (ENSCHYG00000008365) #11 PLPP4 (ENSCHYG00000008482) #12 ENSCHYG00000008531 WDR11 (ENSCHYG00000008551) #13 FGFR2 (ENSCHYG00000008730) #14 ATE1 (ENSCHYG00000010156) #15 ENSCHYG00000010624 #16 NSMCE4A (ENSCHYG00000010654) #17 TACC2 (ENSCHYG00000010835) #18 BTBD16 (ENSCHYG00000011865) #19 PLEKHA1 (ENSCHYG00000012229) #20 HTRA1 (ENSCHYG00000012466) #21 ENSCHYG00000012574 #22 ENSCHYG00000012694 #25 C10orf120 (ENSCHYG00000012768) #24 ENSCHYG00000012814 ##22 ENSCHYG00000012970 #28 ENSCHYG00000013013 #29 ENSCHYG00000013157 #29 ENSCHYG00000013211 #28 IKZF5 (ENSCHYG00000013253) ACADSB (ENSCHYG00000013318) HMX3 (ENSCHYG00000013451) HMX2 (ENSCHYG00000013483) BUB3 (ENSCHYG00000013530) GPR26 (ENSCHYG00000013748) CPXM2 (ENSCHYG00000013812) CHST15 (ENSCHYG00000014028) OAT (ENSCHYG00000014322) ENSCHYG00000014425 LHPP (ENSCHYG00000014469) Percora_a ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Bovidae ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Caprinae ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Rambouillet Sheep MODERN SPECIES 14 MCMBP (ENSOARG00020017074) #10 SEC23IP (ENSOARG00020017426) #11 ENSOARG00020018045 ENSOARG00020018072 PLPP4 (ENSOARG00020018154) #12 WDR11 (ENSOARG00020018347) #13 ENSOARG00020018691 FGFR2 (ENSOARG00020018761) #14 ENSOARG00020019110 ATE1 (ENSOARG00020019169) #15 NSMCE4A (ENSOARG00020019481) #17 BTBD16 (ENSOARG00020021862) #19 PLEKHA1 (ENSOARG00020021950) #20 HTRA1 (ENSOARG00020022118) #21 ENSOARG00020022216 #22 ENSOARG00020022252 ##22 ENSOARG00020022296 #23 ENSOARG00020022322 #23 ENSOARG00020022345 #23 C10orf120 (ENSOARG00020022395) #24 ENSOARG00020022445 #25 ENSOARG00020022472 #25 ENSOARG00020022490 #28 ENSOARG00020022507 ENSOARG00020022531 #29 ENSOARG00020022621 #28 ENSOARG00020022651 #29 PSTK (ENSOARG00020022690) IKZF5 (ENSOARG00020022735) ACADSB (ENSOARG00020022775) HMX3 (ENSOARG00020022802) Marsupialia ANCESTRAL SPECIES ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00940000157351.j ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00940000165188 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00950000183145.D ##22 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00950000182946.d.a ENSGT00950000182946.c.a.b ENSGT00950000182946.c.a.a ENSGT00940000156169 Opossum MODERN SPECIES WDR11 (ENSMODG00000008627) #13 FGFR2 (ENSMODG00000008525) #14 ENSMODG00000008447 ENSMODG00000036472 ENSMODG00000044877 ATE1 (ENSMODG00000008434) #15 ENSMODG00000008405 ENSMODG00000008327 #18 ENSMODG00000038482 #18 BTBD16 (ENSMODG00000008285) #19 PLEKHA1 (ENSMODG00000008263) #20 HTRA1 (ENSMODG00000008235) #21 ENSMODG00000008170 #22 ENSMODG00000007900 #24 ENSMODG00000007895 #22 ENSMODG00000040843 ##22 CUZD1 (ENSMODG00000007863) #27 C10orf88 (ENSMODG00000007814) #29 PSTK (ENSMODG00000007808) IKZF5 (ENSMODG00000038834) ACADSB (ENSMODG00000007778) HMX3 (ENSMODG00000007552) HMX2 (ENSMODG00000007548) ENSMODG00000007542 GPR26 (ENSMODG00000007533) CPXM2 (ENSMODG00000007502) CHST15 (ENSMODG00000007407) ENSMODG00000038857 ENSMODG00000024882 ENSMODG00000007358 ENSMODG00000045416 Marsupialia_b ANCESTRAL SPECIES ENSGT00940000158288 #12 ENSGT00940000157351.j ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00950000183145.D ##22 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00950000182946.d.a ENSGT00950000182946.c.a.b ENSGT00950000182946.c.a.a ENSGT00940000156169 Diprotodontia ANCESTRAL SPECIES 6 ENSGT00940000158288 #12 ENSGT00940000157351.j ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00950000183145.D ##22 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00950000182946.d.a ENSGT00950000182946.c.a.b ENSGT00950000182946.c.a.a ENSGT00940000156169 Diprotodontia_a ANCESTRAL SPECIES 7 ENSGT00940000158288 #12 ENSGT00940000157351.j ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00390000012112 #23 ENSGT00390000005511 #24 ENSGT00940000162108 #25 ENSGT00950000183145.D ##22 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a.f ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00950000182946.d.b ENSGT00950000182946.d.a ENSGT00950000182946.c.a.b ENSGT00950000182946.c.a.a Common wonbat MODERN SPECIES 1067 SEC23IP (ENSVURG00010017493) #11 PLPP4 (ENSVURG00010017515) #12 ENSVURG00010017529 WDR11 (ENSVURG00010017552) #13 FGFR2 (ENSVURG00010017618) #14 ATE1 (ENSVURG00010017712) #15 ENSVURG00010017748 #17 ENSVURG00010017780 #18 BTBD16 (ENSVURG00010018157) #19 ENSVURG00010018198 PLEKHA1 (ENSVURG00010018214) #20 HTRA1 (ENSVURG00010018270) #21 ENSVURG00010018555 #22 ENSVURG00010018628 #25 ENSVURG00010018656 ENSVURG00010018659 ##22 CUZD1 (ENSVURG00010018665) #27 C10orf88 (ENSVURG00010018674) #29 ENSVURG00010018686 IKZF5 (ENSVURG00010018688) ACADSB (ENSVURG00010018698) ENSVURG00010018711 GPR26 (ENSVURG00010018721) CPXM2 (ENSVURG00010018730) CHST15 (ENSVURG00010018756) ENSVURG00010018775 ENSVURG00010018780 ENSVURG00010018781 ENSVURG00010018787 SLC16A12 (ENSVURG00010018792) PANK1 (ENSVURG00010018800) koala MODERN SPECIES 150 ENSPCIG00000025829 #23 ENSPCIG00000025831 #24 ENSPCIG00000025834 #25 ENSPCIG00000032747 ##22 CUZD1 (ENSPCIG00000025837) #27 C10orf88 (ENSPCIG00000025838) #29 PSTK (ENSPCIG00000025839) IKZF5 (ENSPCIG00000025840) ENSPCIG00000025841 HMX3 (ENSPCIG00000025842) HMX2 (ENSPCIG00000025843) ENSPCIG00000025845 ENSPCIG00000026830 GPR26 (ENSPCIG00000026831) CPXM2 (ENSPCIG00000026833) ENSPCIG00000028203 CHST15 (ENSPCIG00000014522) ENSPCIG00000009126 ENSPCIG00000009123 Tasmanian devil MODERN SPECIES 1 PLPP4 (ENSSHAG00000022918) #12 ENSSHAG00000013721 WDR11 (ENSSHAG00000012828) #13 FGFR2 (ENSSHAG00000006217) #14 ATE1 (ENSSHAG00000028389) #15 ENSSHAG00000013127 #16 ENSSHAG00000012962 #17 ENSSHAG00000009993 #18 ENSSHAG00000011665 #18 BTBD16 (ENSSHAG00000010960) #19 PLEKHA1 (ENSSHAG00000024626) #20 HTRA1 (ENSSHAG00000009284) #21 ENSSHAG00000007803 #22 ENSSHAG00000007217 #24 ENSSHAG00000022182 #25 ENSSHAG00000023839 ##22 ENSSHAG00000028811 #27 ENSSHAG00000011736 #27 C10orf88 (ENSSHAG00000024427) #29 ENSSHAG00000030670 IKZF5 (ENSSHAG00000011508) ACADSB (ENSSHAG00000000928) HMX3 (ENSSHAG00000031226) HMX2 (ENSSHAG00000029091) BUB3 (ENSSHAG00000010372) GPR26 (ENSSHAG00000030669) CPXM2 (ENSSHAG00000023947) ENSSHAG00000009520 ENSSHAG00000001370 ENSSHAG00000002618 ENSSHAG00000021228 Sauria ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Archelosauria ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Archosauria ANCESTRAL SPECIES 7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000163882 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a Aves ANCESTRAL SPECIES 6 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000163882.e.a ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b.a ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a Neognathae ANCESTRAL SPECIES 7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000163882.e.a ENSGT00950000183145.A.b.a ##22 ENSGT00940000154525.b.a #27 ENSGT00940000163882.f ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a Galloanserae ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Phasianidae ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Phasianidae_b ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Turkey MODERN SPECIES 13 ENSMGAG00000020918 ENSMGAG00000002131 ABHD11 (ENSMGAG00000002220) ENSMGAG00000001992 ENSMGAG00000001986 ENSMGAG00000001086 ENSMGAG00000001084 ENSMGAG00000019517 ENSMGAG00000018092 ENSMGAG00000001111 ENSMGAG00000020302 ENSMGAG00000001134 ENSMGAG00000001160 TBL2 (ENSMGAG00000001178) ENSMGAG00000001187 ENSMGAG00000001704 ##22 ENSMGAG00000001697 ENSMGAG00000019801 ENSMGAG00000001120 ENSMGAG00000001728 FKBP6 (ENSMGAG00000016672) TRIM50 (ENSMGAG00000001234) ENSMGAG00000001664 ENSMGAG00000001654 ENSMGAG00000001707 ENSMGAG00000001867 ENSMGAG00000001793 ENSMGAG00000001784 ENSMGAG00000001768 ENSMGAG00000001746 ENSMGAG00000001909 Neognathae_b ANCESTRAL SPECIES 8 ENSGT00940000160482 #7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000163882.e.a ENSGT00940000154525.b.a #27 ENSGT00940000163882.f ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Neognathae_c ANCESTRAL SPECIES 22 ENSGT00390000015063 ENSGT00530000063743.b ENSGT00390000013187 ENSGT00940000159751 ENSGT00940000163742 ENSGT00950000183191.a.b ENSGT00390000005003 ENSGT00390000015354.c.b.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT00550000074975 ENSGT00940000160149 ENSGT00940000153392.b.b.a ENSGT00940000153392.b.b.b ENSGT00940000157641 ENSGT00950000183145.D ##22 ENSGT01090000260061.c.a.c.a ENSGT00940000155882.a.a ENSGT01030000235453 ENSGT00940000162625 ENSGT00390000016686 ENSGT00940000164883 ENSGT00390000007848.a ENSGT00940000156847 ENSGT00390000000699 ENSGT00940000156438 ENSGT00940000159596 ENSGT00940000154849.a ENSGT00940000160764 ENSGT00940000155206 ENSGT00390000016209 Kakapo MODERN SPECIES 58 COL26A1 (ENSSHBG00005012425) ENSSHBG00005012468 ENSSHBG00005012710 CUX1 (ENSSHBG00005012729) ENSSHBG00005012775 SH2B2 (ENSSHBG00005012803) PRKRIP1 (ENSSHBG00005012822) ORAI2 (ENSSHBG00005012839) ALKBH4 (ENSSHBG00005012852) LRWD1 (ENSSHBG00005012877) ENSSHBG00005012895 ENSSHBG00005012906 UPK3B (ENSSHBG00005012933) DTX2 (ENSSHBG00005012960) ENSSHBG00005012984 ##22 ENSSHBG00005012997 ##22 YWHAG (ENSSHBG00005013017) HSPB1 (ENSSHBG00005013023) ENSSHBG00005013030 SRRM3 (ENSSHBG00005013038) MDH2 (ENSSHBG00005000746) ENSSHBG00005000755 TMEM120A (ENSSHBG00005000765) POR (ENSSHBG00005005716) RHBDD2 (ENSSHBG00005005771) TAF15 (ENSSHBG00005005797) MMP28 (ENSSHBG00005005940) ENSSHBG00005005958 RASL10B (ENSSHBG00005006000) AP2B1 (ENSSHBG00005006021) PEX12 (ENSSHBG00005006156) Golden eagle MODERN SPECIES 1 IFT22 (ENSACCG00020010732) COL26A1 (ENSACCG00020010750) ENSACCG00020004009 ENSACCG00020004054 ENSACCG00020004067 SH2B2 (ENSACCG00020004080) PRKRIP1 (ENSACCG00020004090) ORAI2 (ENSACCG00020004101) ALKBH4 (ENSACCG00020004109) LRWD1 (ENSACCG00020004124) ENSACCG00020004132 ENSACCG00020004143 ENSACCG00020004162 UPK3B (ENSACCG00020004189) DTX2 (ENSACCG00020004215) ENSACCG00020004237 ##22 YWHAG (ENSACCG00020004244) ENSACCG00020004250 HSPB1 (ENSACCG00020004255) ENSACCG00020004262 ENSACCG00020004279 MDH2 (ENSACCG00020004291) ENSACCG00020004308 TMEM120A (ENSACCG00020004328) POR (ENSACCG00020004354) ENSACCG00020004375 RHBDD2 (ENSACCG00020004381) TAF15 (ENSACCG00020004390) MMP28 (ENSACCG00020004423) ENSACCG00020004447 RASL10B (ENSACCG00020004455) Passeriformes ANCESTRAL SPECIES 10 ENSGT00940000160482 #7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000154525.b.a #27 ENSGT00940000163882.f ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Passeriformes_d ANCESTRAL SPECIES 7 ENSGT00940000160482 #7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000154525.b.a #27 ENSGT00940000163882.f ENSGT00940000163882.e.a ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Flycatcher MODERN SPECIES 9 IFT22 (ENSFALG00000028680) COL26A1 (ENSFALG00000009371) ENSFALG00000009375 ENSFALG00000009380 CUX1 (ENSFALG00000009409) SH2B2 (ENSFALG00000009471) PRKRIP1 (ENSFALG00000026614) ORAI2 (ENSFALG00000025629) ALKBH4 (ENSFALG00000028280) LRWD1 (ENSFALG00000009512) ENSFALG00000009523 ENSFALG00000009533 ENSFALG00000009540 ENSFALG00000027894 DTX2 (ENSFALG00000009561) ENSFALG00000009575 ##22 ENSFALG00000028705 #22 YWHAG (ENSFALG00000026928) HSPB1 (ENSFALG00000009587) ENSFALG00000026877 SRRM3 (ENSFALG00000009603) MDH2 (ENSFALG00000009620) TMEM120A (ENSFALG00000009669) POR (ENSFALG00000009688) ENSFALG00000009693 ENSFALG00000009696 MMP28 (ENSFALG00000009701) ENSFALG00000027238 RASL10B (ENSFALG00000027159) AP2B1 (ENSFALG00000009715) PEX12 (ENSFALG00000009719) Passeriformes_g ANCESTRAL SPECIES 8 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00940000154525.b.a #27 ENSGT00940000163882.f ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00950000182865.b.b.b.c.b ENSGT00630000089895 Passeroidea ANCESTRAL SPECIES 7 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00940000163882.e.a ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00950000182865.b.b.b.c.b ENSGT00630000089895 ENSGT00940000159002 Zebra finch MODERN SPECIES 28 GRK5 (ENSTGUG00000011126) RGS10 (ENSTGUG00000023661) ENSTGUG00000011148 BAG3 (ENSTGUG00000011164) #8 INPP5F (ENSTGUG00000011167) #9 MCMBP (ENSTGUG00000011183) #10 SEC23IP (ENSTGUG00000011192) #11 PLPP4 (ENSTGUG00000011201) #12 WDR11 (ENSTGUG00000011203) #13 FGFR2 (ENSTGUG00000011228) #14 ATE1 (ENSTGUG00000011274) #15 NSMCE4A (ENSTGUG00000011287) #17 TACC2 (ENSTGUG00000011300) #18 PLEKHA1 (ENSTGUG00000011311) #20 HTRA1 (ENSTGUG00000011319) #21 ENSTGUG00000011310 ##22 ENSTGUG00000019976 ENSTGUG00000018513 #29 ENSTGUG00000011344 PSTK (ENSTGUG00000011358) IKZF5 (ENSTGUG00000023212) ACADSB (ENSTGUG00000011363) HMX3 (ENSTGUG00000011379) HMX2 (ENSTGUG00000011380) BUB3 (ENSTGUG00000011382) GPR26 (ENSTGUG00000019570) CPXM2 (ENSTGUG00000011397) CHST15 (ENSTGUG00000011423) ENSTGUG00000011432 OAT (ENSTGUG00000011436) ENSTGUG00000022969 Medium ground finch MODERN SPECIES 90 IFT22 (ENSGFOG00000013899) COL26A1 (ENSGFOG00000013903) ENSGFOG00000013915 ENSGFOG00000000405 CUX1 (ENSGFOG00000000418) ENSGFOG00000000438 SH2B2 (ENSGFOG00000000451) PRKRIP1 (ENSGFOG00000000469) ORAI2 (ENSGFOG00000000479) ALKBH4 (ENSGFOG00000000485) LRWD1 (ENSGFOG00000000491) ENSGFOG00000000503 ENSGFOG00000000512 ENSGFOG00000000529 DTX2 (ENSGFOG00000000543) ENSGFOG00000000570 ##22 YWHAG (ENSGFOG00000000583) HSPB1 (ENSGFOG00000000587) ENSGFOG00000000595 SRRM3 (ENSGFOG00000000606) MDH2 (ENSGFOG00000000621) ENSGFOG00000000640 TMEM120A (ENSGFOG00000000663) POR (ENSGFOG00000000818) ENSGFOG00000000852 TAF15 (ENSGFOG00000000872) ENSGFOG00000000894 MMP28 (ENSGFOG00000000904) ENSGFOG00000000917 RASL10B (ENSGFOG00000000933) AP2B1 (ENSGFOG00000000948) Lepidosauria ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Episquamata ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Laterata ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Common wall lizard MODERN SPECIES 6 RABEP1 (ENSPMRG00000016237) NUP88 (ENSPMRG00000016474) ENSPMRG00000016830 MIS12 (ENSPMRG00000016833) DERL2 (ENSPMRG00000016840) DHX33 (ENSPMRG00000016862) C1QBP (ENSPMRG00000016881) CAMKK1 (ENSPMRG00000016892) P2RX1 (ENSPMRG00000016916) ATP2A3 (ENSPMRG00000017017) ENSPMRG00000017620 ENSPMRG00000017629 UPK3B (ENSPMRG00000017647) DTX2 (ENSPMRG00000017658) ENSPMRG00000017665 ENSPMRG00000017670 ##22 YWHAG (ENSPMRG00000017676) ENSPMRG00000017686 HSPB1 (ENSPMRG00000017688) ENSPMRG00000017723 ENSPMRG00000017732 ENSPMRG00000017737 MDH2 (ENSPMRG00000017750) STYXL1 (ENSPMRG00000017774) TMEM120A (ENSPMRG00000017797) POR (ENSPMRG00000017929) RHBDD2 (ENSPMRG00000018356) PEX12 (ENSPMRG00000018371) AP2B1 (ENSPMRG00000018527) RASL10B (ENSPMRG00000018960) ENSPMRG00000018970 Toxicofera ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Elapidae ANCESTRAL SPECIES ENSGT00950000183145.D ##22 Indian cobra DUPLICATION Indian cobra MODERN SPECIES ENSNNAG00000002161 ENSNNAG00000002167 ENSNNAG00000002170 ENSNNAG00000002178 ENSNNAG00000002180 ENSNNAG00000002189 ENSNNAG00000002198 BAAT (ENSNNAG00000002206) ENSNNAG00000002209 ZP1 (ENSNNAG00000002223) ENSNNAG00000002234 ENSNNAG00000002312 TMEM109 (ENSNNAG00000002317) TMEM132A (ENSNNAG00000002324) SLC15A3 (ENSNNAG00000002332) ENSNNAG00000002346 ##22 ENSNNAG00000002362 ENSNNAG00000002381 ENSNNAG00000002423 ENSNNAG00000002446 ENSNNAG00000002458 ENSNNAG00000000291 DDB1 (ENSNNAG00000000380) TKFC (ENSNNAG00000000422) CYB561A3 (ENSNNAG00000000440) TMEM138 (ENSNNAG00000000451) TMEM216 (ENSNNAG00000000466) ENSNNAG00000000478 CPSF7 (ENSNNAG00000000495) SDHAF2 (ENSNNAG00000000510) PPP1R32 (ENSNNAG00000000524) Indian cobra MODERN SPECIES IFT22 (ENSNNAG00000007132) RABEP1 (ENSNNAG00000007180) NUP88 (ENSNNAG00000008142) RPAIN (ENSNNAG00000008684) MIS12 (ENSNNAG00000008724) DERL2 (ENSNNAG00000008736) DHX33 (ENSNNAG00000008768) C1QBP (ENSNNAG00000008867) CAMKK1 (ENSNNAG00000008900) P2RX1 (ENSNNAG00000009018) ATP2A3 (ENSNNAG00000009196) ZZEF1 (ENSNNAG00000011285) ENSNNAG00000013484 DTX2 (ENSNNAG00000013501) ENSNNAG00000013536 ENSNNAG00000013557 ##22 ENSNNAG00000013575 YWHAG (ENSNNAG00000013591) HSPB1 (ENSNNAG00000013601) MDH2 (ENSNNAG00000013654) ENSNNAG00000013666 TMEM120A (ENSNNAG00000013725) POR (ENSNNAG00000013759) ENSNNAG00000013799 ENSNNAG00000013812 TAF15 (ENSNNAG00000013821) ENSNNAG00000013856 ENSNNAG00000013864 RASL10B (ENSNNAG00000013950) AP2B1 (ENSNNAG00000013966) PEX12 (ENSNNAG00000014026) Actinopterygii ANCESTRAL SPECIES 100 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D ##22 ENSGT01090000260061.c.a.c.a ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000154757 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00940000156747 ENSGT00940000154890.a ENSGT01020000230351.C ENSGT00940000155668 ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000176156 Reedfish MODERN SPECIES 16 ggnbp2 (ENSECRG00000014003) pigw (ENSECRG00000014034) MYO19 (ENSECRG00000014070) znhit3 (ENSECRG00000014189) ca4a (ENSECRG00000014210) mpx (ENSECRG00000014456) GUSB (ENSECRG00000016834) vkorc1l1 (ENSECRG00000016871) nupr1a (ENSECRG00000016890) MTMR4 (ENSECRG00000016928) hpda (ENSECRG00000017044) ENSECRG00000017205 ENSECRG00000017279 supt4h1 (ENSECRG00000017339) ENSECRG00000017409 ENSECRG00000017611 ##22 ywhag1 (ENSECRG00000018164) hspb1 (ENSECRG00000018180) SRRM3 (ENSECRG00000018204) mpx (ENSECRG00000018252) ENSECRG00000018301 ENSECRG00000018330 ENSECRG00000018364 ENSECRG00000018382 ENSECRG00000018405 ENSECRG00000018445 rpain (ENSECRG00000018481) c1qbp (ENSECRG00000018496) dhx33 (ENSECRG00000018515) camkk1a (ENSECRG00000018554) p2rx1 (ENSECRG00000018633) Neopterygii ANCESTRAL SPECIES 98 ENSGT00940000159426 ENSGT00940000159414 ENSGT00940000160349 ENSGT00940000160149 ENSGT00940000153392.b.b ENSGT00940000157641 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00940000158976 ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D ##22 ENSGT01090000260061.c.a.c.a ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000163443 ENSGT00940000154757 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00940000156747 ENSGT00940000154890.a ENSGT01020000230351.C ENSGT00940000155668 ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 Osteoglossocephalai DUPLICATION Osteoglossocephalai DUPLICATION Osteoglossocephalai ANCESTRAL SPECIES 952 ENSGT00950000183145.D.h.a ##22 ENSGT01090000260061.c.a.c.a.a.a Clupeocephala ANCESTRAL SPECIES ENSGT00950000183145.D.h.a ##22 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000183145.D.h.a ##22 Protacanthopterygii ANCESTRAL SPECIES 105 ENSGT00390000006633.a ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044.o ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.h.a ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00980000199127 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT01060000250877 ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 Salmoninae ANCESTRAL SPECIES 277 ENSGT00950000183145.D.h.a ##22 ENSGT01090000260061.c.a.c.a.a.b.b ENSGT00980000199127.b ENSGT00940000155882.a.a.d ENSGT00940000162625 ENSGT00940000159210.l ENSGT01010000224314 ENSGT00390000018406.a ENSGT00940000156747.l ENSGT01020000230351.C.f ENSGT00940000154890.a.a.d ENSGT00940000155668.j.c.b ENSGT00940000155045 ENSGT00940000156179.d ENSGT00940000155228.e ENSGT00940000154735.c.e Salmoninae_a ANCESTRAL SPECIES 4 ENSGT00940000161111.a ENSGT00390000006633.a.r ENSGT00390000009552.i ENSGT00940000157044.p ENSGT00390000001752.r ENSGT00940000155690.b.a.f ENSGT00940000158976.h.b ENSGT00940000154006.b.e ENSGT00390000018559.g ENSGT00950000183203.d.d.l.a ENSGT00950000183145.D.h.a ##22 ENSGT01090000260061.c.a.c.a.a.b.b ENSGT00980000199127.b ENSGT00940000155882.a.a.d ENSGT00940000162625.c ENSGT00940000159210.l ENSGT01010000224314 ENSGT00390000018406.a ENSGT00940000156747.l ENSGT01020000230351.C.f ENSGT00940000154890.a.a.d ENSGT00940000155668.j.c.b ENSGT00940000155045 ENSGT00990000212862 ENSGT00940000156179.d ENSGT00940000155228.e Salmo ANCESTRAL SPECIES 44 ENSGT00940000161111.a ENSGT00390000006633.a.r ENSGT00390000009552.i ENSGT00940000157044.p ENSGT00390000001752.r ENSGT00940000155690.b.a.f ENSGT00940000158976.h.b ENSGT00940000154006.b.e ENSGT00510000048674.i ENSGT00390000018559.g ENSGT00950000183203.d.d.l.a ENSGT00950000183145.D.h.a ##22 ENSGT01090000260061.c.a.c.a.a.b.b ENSGT00940000155882.a.a.d ENSGT00940000162625.c ENSGT00940000159210.l ENSGT01010000224314 ENSGT00390000018406.a ENSGT01020000230351.C.f ENSGT00940000154890.a.a.d ENSGT00940000155668.j.c.b ENSGT00940000155045 ENSGT00990000212862 ENSGT00940000156179.d ENSGT00940000155228.e ENSGT00940000154735.c.e ENSGT01100000263892.b.a Atlantic salmon MODERN SPECIES 4 ENSSSAG00000093906 ENSSSAG00000100062 ENSSSAG00000064552 ENSSSAG00000108420 ENSSSAG00000084076 sp30l (ENSSSAG00000069942) ENSSSAG00000069957 ENSSSAG00000096234 ENSSSAG00000108195 ENSSSAG00000070051 ENSSSAG00000111810 ENSSSAG00000070458 ENSSSAG00000073513 supt4h1 (ENSSSAG00000073514) ENSSSAG00000073527 ENSSSAG00000119650 ##22 143g1 (ENSSSAG00000038870) hspb1 (ENSSSAG00000101076) srrm3 (ENSSSAG00000039179) ENSSSAG00000086270 ENSSSAG00000039257 ENSSSAG00000039636 c1qbp (ENSSSAG00000039711) ENSSSAG00000115502 p2rx1 (ENSSSAG00000039817) camkk1a (ENSSSAG00000040052) ATP2A3 (ENSSSAG00000040294) ZZEF1 (ENSSSAG00000041149) ENSSSAG00000042927 ENSSSAG00000086033 ankfy1 (ENSSSAG00000042993) River trout MODERN SPECIES 6 ENSSTUG00000012462 ENSSTUG00000012478 ENSSTUG00000012569 ENSSTUG00000012586 HAND1 (ENSSTUG00000012604) ENSSTUG00000012613 ggnbp2 (ENSSTUG00000012629) GUSB (ENSSTUG00000012723) vkorc1l1 (ENSSTUG00000013236) ENSSTUG00000013258 MTMR4 (ENSSTUG00000013379) RNF43 (ENSSTUG00000016472) ENSSTUG00000016481 ENSSTUG00000016495 ENSSTUG00000016517 ENSSTUG00000016687 ##22 YWHAG (ENSSTUG00000016703) hspb1 (ENSSTUG00000016717) SRRM3 (ENSSTUG00000016738) ENSSTUG00000016772 ENSSTUG00000017131 c1qbp (ENSSTUG00000017143) p2rx1 (ENSSTUG00000017171) camkk1a (ENSSTUG00000017272) ATP2A3 (ENSSTUG00000017361) ENSSTUG00000017545 ZZEF1 (ENSSTUG00000017555) ENSSTUG00000017628 ankfy1 (ENSSTUG00000017652) ube2g1a (ENSSTUG00000017825) hnrnpabb (ENSSTUG00000017846) Oncorhynchus ANCESTRAL SPECIES 4 ENSGT00940000161843 ENSGT00530000067117.a ENSGT00940000156198.c.a ENSGT00390000003354.e ENSGT00950000183073.a.a.b.f.a ENSGT00940000161111.a ENSGT00390000006633.a.r ENSGT00390000009552.i ENSGT00940000157044.p ENSGT00390000001752.r ENSGT00940000155690.b.a.f ENSGT00940000158976.h.b ENSGT00940000154006.b.e ENSGT01060000250101 ENSGT00950000183203.d.d.l.a ENSGT00950000183145.D.h.a ##22 ENSGT01090000260061.c.a.c.a.a.b.b ENSGT00980000199127.b ENSGT00940000155882.a.a.d ENSGT00940000162625.c ENSGT00940000159210.l ENSGT01010000224314 ENSGT00390000018406.a ENSGT00940000156747.l ENSGT01020000230351.C.f ENSGT00940000154890.a.a.d ENSGT00940000155668.j.c.b ENSGT00940000155045 ENSGT00990000212862 ENSGT00940000156179.d ENSGT00940000155228.e Oncorhynchus_a ANCESTRAL SPECIES 2 ENSGT00940000161843 ENSGT00530000067117.a ENSGT00940000156198.c.a ENSGT00390000003354.e ENSGT00950000183073.a.a.b.f.a ENSGT00940000161111.a ENSGT00390000006633.a.r ENSGT00390000009552.i ENSGT00940000157044.p ENSGT00390000001752.r ENSGT00940000155690.b.a.f ENSGT00940000158976.h.b ENSGT00940000154006.b.e ENSGT01060000250101 ENSGT00950000183203.d.d.l.a ENSGT00950000183145.D.h.a ##22 ENSGT01090000260061.c.a.c.a.a.b.b ENSGT00980000199127.b ENSGT00940000155882.a.a.d ENSGT00940000162625.c ENSGT00940000159210.l ENSGT01010000224314 ENSGT00390000018406.a ENSGT00940000156747.l ENSGT01020000230351.C.f ENSGT00940000154890.a.a.d ENSGT00940000155668.j.c.b ENSGT00940000155045 ENSGT00990000212862 ENSGT00940000156179.d ENSGT00940000155228.e Coho salmon MODERN SPECIES 26 slc30a9 (ENSOKIG00005010432) RAB28 (ENSOKIG00005010411) NKX3-2 (ENSOKIG00005010403) ENSOKIG00005010392 COPS6 (ENSOKIG00005010315) HAND1 (ENSOKIG00005010299) SAP30L (ENSOKIG00005010288) GGNBP2 (ENSOKIG00005010255) vkorc1l1 (ENSOKIG00005010236) GUSB (ENSOKIG00005009847) ca4a (ENSOKIG00005009773) MTMR4 (ENSOKIG00005009483) RNF43 (ENSOKIG00005009430) ENSOKIG00005009393 ENSOKIG00005009330 ENSOKIG00005009303 ##22 YWHAG (ENSOKIG00005009289) ENSOKIG00005009271 hspb1 (ENSOKIG00005009254) SRRM3 (ENSOKIG00005009227) ENSOKIG00005009083 ENSOKIG00005009043 c1qbp (ENSOKIG00005009024) DHX33 (ENSOKIG00005008981) p2rx1 (ENSOKIG00005008860) ENSOKIG00005008821 camkk1a (ENSOKIG00005008776) ATP2A3 (ENSOKIG00005008618) ZZEF1 (ENSOKIG00005007501) ENSOKIG00005007455 ankfy1 (ENSOKIG00005007385) Chinook salmon MODERN SPECIES 33 slc30a9 (ENSOTSG00005033724) NKX3-2 (ENSOTSG00005033723) ENSOTSG00005033722 ENSOTSG00005033719 COPS6 (ENSOTSG00005033701) HAND1 (ENSOTSG00005033696) SAP30L (ENSOTSG00005033695) ggnbp2 (ENSOTSG00005033693) vkorc1l1 (ENSOTSG00005033689) GUSB (ENSOTSG00005033286) ca4a (ENSOTSG00005033283) MTMR4 (ENSOTSG00005022167) RNF43 (ENSOTSG00005022137) ENSOTSG00005022136 ENSOTSG00005022132 ENSOTSG00005022131 ##22 YWHAG (ENSOTSG00005022130) ENSOTSG00005022128 hspb1 (ENSOTSG00005022126) SRRM3 (ENSOTSG00005022122) ENSOTSG00005022074 ENSOTSG00005022066 ENSOTSG00005022064 c1qbp (ENSOTSG00005022061) dhx33 (ENSOTSG00005022058) p2rx1 (ENSOTSG00005022050) camkk1a (ENSOTSG00005022048) ATP2A3 (ENSOTSG00005021980) ENSOTSG00005021742 ankfy1 (ENSOTSG00005019906) ube2g1a (ENSOTSG00005019902) Huchen MODERN SPECIES 2413 ENSHHUG00000038382 ENSHHUG00000038376 ##22 ENSHHUG00000038375 YWHAG (ENSHHUG00000038341) ENSHHUG00000038332 hspb1 (ENSHHUG00000038322) Northern pike MODERN SPECIES 6 znhit3 (ENSELUG00000000856) nupr1a (ENSELUG00000019495) vkorc1l1 (ENSELUG00000019523) GUSB (ENSELUG00000019564) ca4a (ENSELUG00000000861) MTMR4 (ENSELUG00000019662) hpda (ENSELUG00000019714) ENSELUG00000019770 ENSELUG00000019733 ENSELUG00000019748 ENSELUG00000019791 supt4h1 (ENSELUG00000019831) ENSELUG00000019930 ENSELUG00000029372 ENSELUG00000034168 ENSELUG00000019966 ##22 YWHAG (ENSELUG00000019980) hspb1 (ENSELUG00000000880) ENSELUG00000020024 SRRM3 (ENSELUG00000030395) ENSELUG00000030474 ENSELUG00000020086 rpain (ENSELUG00000020160) c1qbp (ENSELUG00000020217) dhx33 (ENSELUG00000020257) ENSELUG00000029668 p2rx1 (ENSELUG00000020285) camkk1a (ENSELUG00000020319) ENSELUG00000026241 ENSELUG00000020396 ENSELUG00000033003 Osteoglossiformes ANCESTRAL SPECIES 27 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044.s ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.h.a ##22 ENSGT01090000260061.c.a.c.a.a.a ENSGT00940000155882.a.a.b ENSGT00940000154890.a.b ENSGT00940000155882.a.a.a ENSGT00980000199127 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000174983 ENSGT00940000155668 ENSGT00940000155045 Asian bonytongue MODERN SPECIES 17 dhrs11a (ENSSFOG00015022856) ggnbp2 (ENSSFOG00015022866) pigw (ENSSFOG00015000054) MYO19 (ENSSFOG00015000055) znhit3 (ENSSFOG00015028576) nupr1a (ENSSFOG00015000060) vkorc1l1 (ENSSFOG00015029965) GUSB (ENSSFOG00015000080) ca4a (ENSSFOG00015000184) MTMR4 (ENSSFOG00015000323) hpda (ENSSFOG00015000487) ENSSFOG00015000547 ENSSFOG00015029855 supt4h1 (ENSSFOG00015030696) ENSSFOG00015001262 ENSSFOG00015001530 ##22 YWHAG (ENSSFOG00015005117) HSPB1 (ENSSFOG00015032567) ENSSFOG00015001582 SRRM3 (ENSSFOG00015001696) ENSSFOG00015001703 rpain (ENSSFOG00015001717) c1qbp (ENSSFOG00015025738) dhx33 (ENSSFOG00015001783) p2rx1 (ENSSFOG00015001843) camkk1a (ENSSFOG00015001875) ATP2A3 (ENSSFOG00015001908) ZZEF1 (ENSSFOG00015002015) cyb5d2 (ENSSFOG00015030114) ankfy1 (ENSSFOG00015002252) UBE2G1 (ENSSFOG00015002389) P. kingsleyae MODERN SPECIES 28 ggnbp2 (ENSPKIG00000016390) pigw (ENSPKIG00000016463) MYO19 (ENSPKIG00000016488) znhit3 (ENSPKIG00000016556) nupr1a (ENSPKIG00000016570) vkorc1l1 (ENSPKIG00000016585) GUSB (ENSPKIG00000016604) ca4a (ENSPKIG00000016649) MTMR4 (ENSPKIG00000016725) hpda (ENSPKIG00000016911) RNF43 (ENSPKIG00000016965) ENSPKIG00000016985 ENSPKIG00000016994 supt4h1 (ENSPKIG00000017008) ENSPKIG00000017060 ENSPKIG00000017182 ##22 YWHAG (ENSPKIG00000017195) hspb1 (ENSPKIG00000017205) SRRM3 (ENSPKIG00000017233) MLXIPL (ENSPKIG00000017285) rpain (ENSPKIG00000017333) c1qbp (ENSPKIG00000017376) dhx33 (ENSPKIG00000017401) p2rx1 (ENSPKIG00000017459) camkk1a (ENSPKIG00000017515) ENSPKIG00000017538 ATP2A3 (ENSPKIG00000017593) ENSPKIG00000017699 ZZEF1 (ENSPKIG00000017736) cyb5d2 (ENSPKIG00000017813) ankfy1 (ENSPKIG00000017845) Osteoglossocephalai ANCESTRAL SPECIES 870 ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.b Clupeocephala ANCESTRAL SPECIES 782 ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.b Otomorpha ANCESTRAL SPECIES 23 ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.b ENSGT00940000155882.a.a ENSGT00980000199127.d ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000155228 Otophysi ANCESTRAL SPECIES 14 ENSGT00940000157272.h ENSGT01030000234517.E.c ENSGT00940000158557.l ENSGT00390000017839 ENSGT00940000156747 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.b.c ENSGT00980000199127.d ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00390000010822 ENSGT00940000157382 ENSGT00390000013520 ENSGT00390000009552 ENSGT00840000129887.g.b ENSGT00940000166243 ENSGT00560000077232.B.g.b ENSGT00940000164254.b Characiphysae ANCESTRAL SPECIES 65 ENSGT01030000234517.E.c ENSGT00940000158557.l ENSGT00390000017839 ENSGT00940000156747 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.b.c ENSGT00940000155882.a.a ENSGT00980000199127.d ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00390000010822 ENSGT00940000157382 ENSGT00390000013520 ENSGT00390000009552 ENSGT00840000129887.g.b ENSGT00940000166243 ENSGT00560000077232.B.g.b ENSGT00940000164254.b Characiphysae_b ANCESTRAL SPECIES 43 ENSGT01030000234517.E.c ENSGT00940000158557.l ENSGT00390000017839 ENSGT00940000156747 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.b.c ENSGT00980000199127.d ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00390000010822 ENSGT00940000157382 ENSGT00390000013520 ENSGT00390000009552 ENSGT00840000129887.g.b ENSGT00940000166243 ENSGT00560000077232.B.g.b ENSGT00940000164254.b ENSGT00390000013800 Characoidei ANCESTRAL SPECIES 146 ENSGT00390000001752 ENSGT00940000157044 ENSGT00940000167280 ENSGT00940000156747 ENSGT00940000155690.b.a.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.b.c ENSGT00980000199127.d ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00390000010822 ENSGT00940000157382 ENSGT00390000013520 ENSGT00390000009552 ENSGT00840000129887.g.b ENSGT00940000166243 ENSGT00560000077232.B.g.b ENSGT00940000164254.b ENSGT00390000013800 Red-bellied piranha MODERN SPECIES 240 ENSPNAG00000009399 supt4h1 (ENSPNAG00000009422) ENSPNAG00000009526 ENSPNAG00000009574 ##22 ywhag1 (ENSPNAG00000009594) ENSPNAG00000009606 hspb1 (ENSPNAG00000004945) SRRM3 (ENSPNAG00000009621) ENSPNAG00000009635 rpain (ENSPNAG00000009665) c1qbp (ENSPNAG00000009689) znhit3 (ENSPNAG00000009703) MYO19 (ENSPNAG00000009723) pigw (ENSPNAG00000009728) ggnbp2 (ENSPNAG00000009772) dhrs11a (ENSPNAG00000009804) ENSPNAG00000009819 flot2a (ENSPNAG00000001344) ENSPNAG00000009914 Mexicana tetra MODERN SPECIES 111 CIT (ENSAMXG00000015739) RAB35 (ENSAMXG00000040604) rplp0 (ENSAMXG00000032613) GUSB (ENSAMXG00000042392) vkorc1l1 (ENSAMXG00000015856) nupr1a (ENSAMXG00000024841) dhx33 (ENSAMXG00000015875) ca4a (ENSAMXG00000043073) ENSAMXG00000024842 MTMR4 (ENSAMXG00000015899) hpda (ENSAMXG00000015913) ENSAMXG00000015935 ENSAMXG00000030920 supt4h1 (ENSAMXG00000041272) ENSAMXG00000015980 ENSAMXG00000016010 ##22 ywhag1 (ENSAMXG00000035383) hspb1 (ENSAMXG00000016037) ENSAMXG00000031070 SRRM3 (ENSAMXG00000016051) MLXIPL (ENSAMXG00000016067) rpain (ENSAMXG00000016087) c1qbp (ENSAMXG00000016100) znhit3 (ENSAMXG00000042020) MYO19 (ENSAMXG00000016118) pigw (ENSAMXG00000024844) ggnbp2 (ENSAMXG00000016123) SSR4 (ENSAMXG00000032687) dhrs11a (ENSAMXG00000030213) ENSAMXG00000016157 flot2a (ENSAMXG00000016179) Channel catfish MODERN SPECIES 20 GUSB (ENSIPUG00000011688) ca4a (ENSIPUG00000011729) ca4a (ENSIPUG00000011745) mtmr4 (ENSIPUG00000011795) hpda (ENSIPUG00000011930) rnf43 (ENSIPUG00000012016) ENSIPUG00000012036 ENSIPUG00000012053 supt4h1 (ENSIPUG00000012062) ENSIPUG00000012129 zgc:112001 (ENSIPUG00000012267) ENSIPUG00000012287 ENSIPUG00000012304 zgc:112001 (ENSIPUG00000012310) zgc:112001 (ENSIPUG00000012340) ENSIPUG00000012354 ##22 ywhag1 (ENSIPUG00000012397) hspb1 (ENSIPUG00000012429) ENSIPUG00000012445 ENSIPUG00000012451 srrm3 (ENSIPUG00000012467) ENSIPUG00000012479 rpain (ENSIPUG00000012533) c1qbp (ENSIPUG00000012598) znhit3 (ENSIPUG00000012609) myo19 (ENSIPUG00000012625) PIGW (ENSIPUG00000012660) GGNBP2 (ENSIPUG00000012675) dhrs11 (ENSIPUG00000012723) flot2a (ENSIPUG00000013356) tbx6l (ENSIPUG00000013387) Cyprinoidei ANCESTRAL SPECIES 16 ENSGT00530000063974.b ENSGT00530000063404.a.m ENSGT01030000234606.a.b.p ENSGT00390000017839 ENSGT00940000156747 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.b.c ENSGT00940000155882.a.a ENSGT00980000199127.d ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00390000010822 ENSGT00940000157382 ENSGT00390000013520 ENSGT00390000009552 ENSGT00840000129887.g.b ENSGT00940000166243 ENSGT00940000165297.k.a.a ENSGT00940000165297.k.a.b Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 25 ENSGT00940000158976.j.a ENSGT00950000183116.b.a.a.a.a.f ENSGT00940000167280.b ENSGT00940000157044.q.b ENSGT00390000001752.d ENSGT00940000155690.b.a.c ENSGT00940000158976.j.b ENSGT00530000063474.B.e.b ENSGT00940000154006.b.c.b ENSGT00390000018559.a ENSGT00950000183203.d.d.o ENSGT00940000154006.b.c.a ENSGT00510000048674 ENSGT00390000018559.b ENSGT00950000183203.d.d.p ENSGT00950000183145.D.h.b.a ##22 ENSGT01090000260061.c.a.c.a.b.c.b ENSGT00940000155882.a.a.l ENSGT00980000199127.d ENSGT00940000162625 ENSGT00940000159210.i ENSGT00390000006416 ENSGT00390000018406.d ENSGT00390000010822.a ENSGT00940000157382.o ENSGT00940000159210.j ENSGT00390000018406.c ENSGT00390000010822.b ENSGT00940000157382.n.b ENSGT00390000013520.e ENSGT00940000157382.n.a Cyprininae_a ANCESTRAL SPECIES 306 ENSGT00390000001752.c ENSGT00940000155690.b.a.d ENSGT00940000158976.j.a ENSGT00950000183116.b.a.a.a.a.f ENSGT00940000167280.b ENSGT00940000157044.q.b ENSGT00390000001752.d ENSGT00940000155690.b.a.c ENSGT00940000158976.j.b ENSGT00530000063474.B.e.b ENSGT00940000154006.b.c.b ENSGT00940000154006.b.d ENSGT00510000048674 ENSGT00390000018559.b ENSGT00950000183203.d.d.p ENSGT00950000183145.D.h.b.a ##22 ENSGT01090000260061.c.a.c.a.b.c.b ENSGT00940000155882.a.a.l ENSGT00940000159210.i ENSGT00390000006416 ENSGT00390000018406.d ENSGT00390000010822.a ENSGT00940000157382.o ENSGT00390000018406.c ENSGT00390000010822.b ENSGT00940000157382.n.a ENSGT00390000013520.f ENSGT00390000009552.a ENSGT00840000129887.g.b.a Common carp reference MODERN SPECIES 15 rplp0 (ENSCCRG00000080758) dhx33 (ENSCCRG00000072284) nupr1a (ENSCCRG00000062347) ENSCCRG00000005946 vkorc1l1 (ENSCCRG00000079493) ENSCCRG00000032437 ca4a (ENSCCRG00000030049) MTMR4 (ENSCCRG00000030066) ENSCCRG00000008625 hpda (ENSCCRG00000024723) ENSCCRG00000024714 ENSCCRG00000049876 supt4h1 (ENSCCRG00000049874) ENSCCRG00000049864 hspb1 (ENSCCRG00000066100) ENSCCRG00000053391 ##22 ywhag1 (ENSCCRG00000067981) ENSCCRG00000060619 ENSCCRG00000074337 ENSCCRG00000073926 rpain (ENSCCRG00000030523) c1qbp (ENSCCRG00000058149) znhit3 (ENSCCRG00000077670) MYO19 (ENSCCRG00000032677) pigw (ENSCCRG00000032662) ggnbp2 (ENSCCRG00000034598) dhrs11a (ENSCCRG00000055687) ENSCCRG00000034609 srrt (ENSCCRG00000010285) prdx4 (ENSCCRG00000067453) sat1a.2 (ENSCCRG00000021595) Golden-line barbel MODERN SPECIES 3280 ENSSGRG00000006283 ##22 Cyprininae ANCESTRAL SPECIES 1141 ENSGT00950000183145.D.h.b.b ##22 ENSGT01090000260061.c.a.c.a.b.c.a ENSGT00940000155882.a.a.k Goldfish MODERN SPECIES 44 zgc:73226 (ENSCARG00000000937) ENSCARG00000001084 TRAF2 (ENSCARG00000001854) ENSCARG00000001864 RABL6 (ENSCARG00000001866) ENSCARG00000001871 MAPKAP1 (ENSCARG00000001874) ENSCARG00000001890 mvb12ba (ENSCARG00000001907) lmx1ba (ENSCARG00000001912) zbtb43 (ENSCARG00000001917) RALGPS1 (ENSCARG00000002209) ENSCARG00000003140 ENSCARG00000003161 ENSCARG00000003164 ENSCARG00000003167 ##22 ywhag1 (ENSCARG00000003174) hspb1 (ENSCARG00000003177) SRRM3 (ENSCARG00000003184) ENSCARG00000003208 ENSCARG00000003226 c1qbp (ENSCARG00000003270) znhit3 (ENSCARG00000003273) MYO19 (ENSCARG00000003294) ggnbp2 (ENSCARG00000003392) dhrs11a (ENSCARG00000003420) ENSCARG00000003428 ENSCARG00000003444 mvb12ba (ENSCARG00000003449) ENSCARG00000003452 ENSCARG00000003454 Cyprininae_a ANCESTRAL SPECIES 701 ENSGT00950000183145.D.h.b.b ##22 ENSGT01090000260061.c.a.c.a.b.c.a ENSGT00980000199127.d ENSGT00940000155882.a.a.k ENSGT00940000162625 ENSGT00940000159210.j Golden-line barbel MODERN SPECIES 809 ENSSGRG00000041193 ##22 ywhag1 (ENSSGRG00000041195) hspb1 (ENSSGRG00000041206) ENSSGRG00000041212 ENSSGRG00000041216 srrt (ENSSGRG00000041231) ENSSGRG00000041299 ENSSGRG00000041306 dhrs11a (ENSSGRG00000041308) ggnbp2 (ENSSGRG00000041311) pigw (ENSSGRG00000041348) ENSSGRG00000041359 znhit3 (ENSSGRG00000041374) sat1a.2 (ENSSGRG00000041380) apooa (ENSSGRG00000041404) ENSSGRG00000041405 Common carp reference MODERN SPECIES 7 ENSCCRG00000018809 ENSCCRG00000054094 ENSCCRG00000066146 ENSCCRG00000068913 ENSCCRG00000066708 rplp0 (ENSCCRG00000047627) nupr1a (ENSCCRG00000059775) vkorc1l1 (ENSCCRG00000056254) ENSCCRG00000062140 ca4a (ENSCCRG00000067028) ENSCCRG00000020705 hpda (ENSCCRG00000032574) ENSCCRG00000032564 supt4h1 (ENSCCRG00000062668) ENSCCRG00000026968 ENSCCRG00000079192 ##22 ywhag1 (ENSCCRG00000055965) ENSCCRG00000035029 hspb1 (ENSCCRG00000069777) SRRM3 (ENSCCRG00000078835) ENSCCRG00000004896 c1qbp (ENSCCRG00000030531) znhit3 (ENSCCRG00000055115) pigw (ENSCCRG00000059201) ggnbp2 (ENSCCRG00000034572) dhrs11a (ENSCCRG00000034601) ENSCCRG00000035241 ENSCCRG00000035246 ENSCCRG00000035256 ENSCCRG00000057331 srrt (ENSCCRG00000034646) Clupeiformes ANCESTRAL SPECIES 215 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.b ENSGT00940000155882.a.a ENSGT00980000199127.d ENSGT00940000162625 ENSGT00950000183145.D.h.b ##22 Denticle herring MODERN SPECIES 16 ggnbp2 (ENSDCDG00000007910) pigw (ENSDCDG00000007844) MYO19 (ENSDCDG00000007794) znhit3 (ENSDCDG00000007763) nupr1a (ENSDCDG00000007759) vkorc1l1 (ENSDCDG00000007757) GUSB (ENSDCDG00000007658) GUSB (ENSDCDG00000007078) ca4a (ENSDCDG00000006968) MTMR4 (ENSDCDG00000005559) hpda (ENSDCDG00000005319) RNF43 (ENSDCDG00000005289) RSPH6A (ENSDCDG00000005287) supt4h1 (ENSDCDG00000005283) ENSDCDG00000005273 ENSDCDG00000005260 ##22 YWHAG (ENSDCDG00000005258) hspb1 (ENSDCDG00000005255) ENSDCDG00000005253 ENSDCDG00000005249 ENSDCDG00000005246 ENSDCDG00000005238 arfip2b (ENSDCDG00000005217) fhdc3 (ENSDCDG00000005195) trim3b (ENSDCDG00000004975) ENSDCDG00000004965 trim47 (ENSDCDG00000004963) frem2a (ENSDCDG00000004818) ufm1 (ENSDCDG00000004781) trpc4a (ENSDCDG00000004760) POSTN (ENSDCDG00000004746) Atlantic herring MODERN SPECIES 24 fam222ba (ENSCHAG00000014529) trpv1 (ENSCHAG00000014199) ggnbp2 (ENSCHAG00000014003) pigw (ENSCHAG00000013980) MYO19 (ENSCHAG00000013412) nupr1a (ENSCHAG00000013373) vkorc1l1 (ENSCHAG00000013357) GUSB (ENSCHAG00000013308) ca4a (ENSCHAG00000013297) MTMR4 (ENSCHAG00000007664) hpda (ENSCHAG00000007096) RNF43 (ENSCHAG00000007072) HSF5 (ENSCHAG00000007039) supt4h1 (ENSCHAG00000006986) ENSCHAG00000006898 ENSCHAG00000006811 ##22 ywhag1 (ENSCHAG00000006782) ENSCHAG00000006754 hspb1 (ENSCHAG00000006742) ENSCHAG00000006582 c1qbp (ENSCHAG00000006549) dhx33 (ENSCHAG00000006024) p2rx1 (ENSCHAG00000005574) camkk1a (ENSCHAG00000005451) ATP2A3 (ENSCHAG00000001494) ZZEF1 (ENSCHAG00000019997) ruvbl2 (ENSCHAG00000019655) SPNS2 (ENSCHAG00000019374) ABCG4 (ENSCHAG00000018688) bhlha9 (ENSCHAG00000018632) WSCD1 (ENSCHAG00000018625) Euteleosteomorpha ANCESTRAL SPECIES 617 ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.b Acanthomorphata ANCESTRAL SPECIES 14 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.b ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00980000199127 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000174983 ENSGT00940000155668.j ENSGT01060000250877 ENSGT00940000155045 Cod MODERN SPECIES 20 flot2a (ENSGMOG00000014172) ENSGMOG00000014132 DHRS11 (ENSGMOG00000014113) ggnbp2 (ENSGMOG00000014074) pigw (ENSGMOG00000020067) MYO19 (ENSGMOG00000014015) znhit3 (ENSGMOG00000013995) nupr1a (ENSGMOG00000020066) vkorc1l1 (ENSGMOG00000034892) ENSGMOG00000013942 ca4a (ENSGMOG00000013920) ENSGMOG00000013873 ENSGMOG00000013287 supt4h1 (ENSGMOG00000014619) ENSGMOG00000033590 ENSGMOG00000013242 ##22 ywhag1 (ENSGMOG00000026114) ENSGMOG00000009601 ENSGMOG00000026427 fam53c (ENSGMOG00000036282) ENSGMOG00000003044 zmat2 (ENSGMOG00000003032) NUP98 (ENSGMOG00000001450) ENSGMOG00000030352 ENSGMOG00000024147 ENSGMOG00000027141 ENSGMOG00000001539 ENSGMOG00000036509 ENSGMOG00000032086 ENSGMOG00000026503 ENSGMOG00000009596 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00950000183145.D.h.b ##22 Percomorphaceae ANCESTRAL SPECIES ENSGT00950000183145.D.h.b ##22 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00950000183145.D.h.b ##22 Ovalentaria ANCESTRAL SPECIES ENSGT00950000183145.D.h.b ##22 Atherinomorphae ANCESTRAL SPECIES ENSGT00950000183145.D.h.b ##22 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00950000183145.D.h.b ##22 Aplocheiloidei ANCESTRAL SPECIES ENSGT00950000183145.D.h.b ##22 Mangrove rivulus MODERN SPECIES 22 dhrs11a (ENSKMAG00000012612) ggnbp2 (ENSKMAG00000012643) pigw (ENSKMAG00000012688) MYO19 (ENSKMAG00000012705) znhit3 (ENSKMAG00000012759) nupr1a (ENSKMAG00000012775) vkorc1l1 (ENSKMAG00000012786) GUSB (ENSKMAG00000012823) ENSKMAG00000012887 ca4a (ENSKMAG00000012903) MTMR4 (ENSKMAG00000012965) hpda (ENSKMAG00000013060) ENSKMAG00000013104 supt4h1 (ENSKMAG00000013119) ENSKMAG00000013190 ENSKMAG00000013416 ##22 YWHAG (ENSKMAG00000013441) hspb1 (ENSKMAG00000013453) SRRM3 (ENSKMAG00000013495) ENSKMAG00000013527 c1qbp (ENSKMAG00000013558) dhx33 (ENSKMAG00000013595) p2rx1 (ENSKMAG00000013653) camkk1a (ENSKMAG00000013707) ATP2A3 (ENSKMAG00000013769) ZZEF1 (ENSKMAG00000013876) cyb5d2 (ENSKMAG00000013997) ankfy1 (ENSKMAG00000014039) ube2g1a (ENSKMAG00000014121) spns3 (ENSKMAG00000014148) SPNS2 (ENSKMAG00000014193) Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000183145.D.h.b ##22 Salmoninae ANCESTRAL SPECIES 312 ENSGT00390000006633.a.q ENSGT00390000009552.j ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044.o ENSGT00390000001752.q ENSGT00940000155690.b.a.e ENSGT00940000158976.h.a ENSGT00530000063474.B.e.b ENSGT00940000154006.b.f ENSGT00510000048674 ENSGT00390000018559.h ENSGT00950000183203.d.d.l.b ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.a.b.a ENSGT00940000155882.a.a.c ENSGT00980000199127.a ENSGT00940000159210.k.a ENSGT00940000159210.k.b ENSGT00390000006416 ENSGT00390000018406.b ENSGT00940000156747.k ENSGT01020000230351.C.e ENSGT00940000154890.a.a.c ENSGT00940000155668.j.c.a ENSGT00940000160156 ENSGT00940000156179.c ENSGT00940000155228.f ENSGT00390000005976.a.a.a Salmoninae_a ANCESTRAL SPECIES 44 ENSGT00390000006633.a.q ENSGT00390000009552.j ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044.o ENSGT00390000001752.q ENSGT00940000155690.b.a.e ENSGT00940000158976.h.a ENSGT00530000063474.B.e.b ENSGT00940000154006.b.f ENSGT00510000048674 ENSGT00390000018559.h ENSGT00950000183203.d.d.l.b ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.a.b.a ENSGT00940000155882.a.a.c ENSGT00940000167838 ENSGT00980000199127.a ENSGT00940000162625.d ENSGT00940000159210.k.a ENSGT00390000006416 ENSGT00390000018406.b ENSGT00940000156747.k ENSGT01020000230351.C.e ENSGT00940000154890.a.a.c ENSGT00940000155668.j.c.a ENSGT00940000160156 ENSGT00940000156179.c ENSGT00940000155228.f Salmo ANCESTRAL SPECIES 17 ENSGT00390000006633.a.q ENSGT00390000009552.j.a ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044.o ENSGT00390000001752.q ENSGT00940000155690.b.a.e ENSGT00940000158976.h.a ENSGT00530000063474.B.e.b ENSGT00940000154006.b.f ENSGT00510000048674.j ENSGT00390000018559.h ENSGT00950000183203.d.d.l.b ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.a.b.a ENSGT00980000199127.a ENSGT00940000155882.a.a.c ENSGT00940000162625.d ENSGT00940000159210.k.a ENSGT00390000006416 ENSGT00390000018406.b ENSGT00940000156747.k ENSGT01020000230351.C.e ENSGT00940000154890.a.a.c ENSGT00940000155668.j.c.a ENSGT00940000160156 ENSGT00940000156179.c ENSGT00940000155228.f ENSGT00390000005976.a.a.a River trout MODERN SPECIES 10 pigw (ENSSTUG00000021387) MYO19 (ENSSTUG00000021399) znhit3 (ENSSTUG00000021500) nupr1a (ENSSTUG00000021511) vkorc1l1 (ENSSTUG00000021517) GUSB (ENSSTUG00000021537) ca4a (ENSSTUG00000022230) MTMR4 (ENSSTUG00000022258) hpda (ENSSTUG00000022568) ENSSTUG00000023675 ENSSTUG00000023687 supt4h1 (ENSSTUG00000023710) ENSSTUG00000023733 ENSSTUG00000023784 ENSSTUG00000023786 ENSSTUG00000023800 ##22 YWHAG (ENSSTUG00000023899) hspb1 (ENSSTUG00000023907) ENSSTUG00000023922 ENSSTUG00000023923 ENSSTUG00000023946 rpain (ENSSTUG00000024111) c1qbp (ENSSTUG00000024132) dhx33 (ENSSTUG00000024151) p2rx1 (ENSSTUG00000024252) ENSSTUG00000024297 camkk1a (ENSSTUG00000024334) ATP2A3 (ENSSTUG00000024544) ENSSTUG00000026426 cyb5d2 (ENSSTUG00000026434) ankfy1 (ENSSTUG00000026462) Atlantic salmon MODERN SPECIES 23 SAP30L (ENSSSAG00000064652) ggnbp2 (ENSSSAG00000064606) pigw (ENSSSAG00000064599) myo19 (ENSSSAG00000064331) znhit3 (ENSSSAG00000064315) vkorc1l1 (ENSSSAG00000101858) ENSSSAG00000063558 ca4a (ENSSSAG00000062204) MTMR4 (ENSSSAG00000061898) hpda (ENSSSAG00000062406) ENSSSAG00000062256 ENSSSAG00000063520 supt4h1 (ENSSSAG00000063502) ENSSSAG00000105652 ENSSSAG00000061595 ENSSSAG00000038823 ##22 YWHAG (ENSSSAG00000093880) ENSSSAG00000061449 hspb1 (ENSSSAG00000088803) SRRM3 (ENSSSAG00000090322) rpain (ENSSSAG00000061383) c1qbp (ENSSSAG00000061401) DHX33 (ENSSSAG00000061210) ENSSSAG00000061168 p2rx1 (ENSSSAG00000061104) ENSSSAG00000095623 camkk1a (ENSSSAG00000061029) atp2a3 (ENSSSAG00000020900) cyb5d2 (ENSSSAG00000015825) ankfy1 (ENSSSAG00000015511) ube2g1a (ENSSSAG00000015419) Oncorhynchus ANCESTRAL SPECIES 41 ENSGT00390000006633.a.q ENSGT00390000009552.j ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044.o ENSGT00390000001752.q ENSGT00940000155690.b.a.e ENSGT00940000158976.h.a ENSGT00530000063474.B.e.b ENSGT00940000154006.b.f ENSGT00510000048674 ENSGT00390000018559.h ENSGT00950000183203.d.d.l.b ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.a.b.a ENSGT00980000199127.a ENSGT00940000155882.a.a.c ENSGT00940000167838 ENSGT00390000006416 ENSGT00390000018406.b ENSGT00940000156747.k ENSGT01020000230351.C.e ENSGT00940000154890.a.a.c ENSGT00940000155668.j.c.a ENSGT00940000160156 ENSGT00940000156179.c ENSGT00940000155228.f ENSGT00390000005976.a.a.a ENSGT00940000154735.c.f Oncorhynchus_a ANCESTRAL SPECIES 43 ENSGT00940000161111.b ENSGT00390000006633.a.q ENSGT00390000009552.j ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044.o ENSGT00390000001752.q ENSGT00940000155690.b.a.e ENSGT00940000158976.h.a ENSGT00530000063474.B.e.b ENSGT00940000154006.b.f ENSGT00510000048674 ENSGT00390000018559.h ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.a.b.a ENSGT00980000199127.a ENSGT00940000155882.a.a.c ENSGT00940000167838 ENSGT00390000006416 ENSGT00390000018406.b ENSGT00940000156747.k ENSGT01020000230351.C.e ENSGT00940000154890.a.a.c ENSGT00940000155668.j.c.a ENSGT00940000160156 ENSGT00940000156179.c ENSGT00940000155228.f ENSGT00390000005976.a.a.a ENSGT00940000154735.c.f Chinook salmon MODERN SPECIES 23 hnrnph1l (ENSOTSG00005039622) zgc:110540 (ENSOTSG00005039619) ENSOTSG00005039618 ankhd1 (ENSOTSG00005035483) eif4ebp3 (ENSOTSG00005035463) mat2b (ENSOTSG00005035459) TENM2 (ENSOTSG00005035455) fnip1 (ENSOTSG00005032634) ENSOTSG00005014821 irf1b (ENSOTSG00005014793) slc22a4 (ENSOTSG00005014781) ENSOTSG00005014779 slc22a21 (ENSOTSG00005014778) ENSOTSG00005014774 YWHAG (ENSOTSG00005014773) ENSOTSG00005014771 ##22 ENSOTSG00005014766 GUSB (ENSOTSG00005014740) vkorc1l1 (ENSOTSG00005014737) znhit3 (ENSOTSG00005014736) MYO19 (ENSOTSG00005014730) pigw (ENSOTSG00005014726) ggnbp2 (ENSOTSG00005014725) SAP30L (ENSOTSG00005014724) HAND1 (ENSOTSG00005014723) pitx1 (ENSOTSG00005014673) ENSOTSG00005014669 PCBD2 (ENSOTSG00005014663) txndc15 (ENSOTSG00005014662) zgc:77058 (ENSOTSG00005014660) ddx46 (ENSOTSG00005013757) Coho salmon MODERN SPECIES 20 MYO19 (ENSOKIG00005037734) znhit3 (ENSOKIG00005037678) nupr1a (ENSOKIG00005037652) vkorc1l1 (ENSOKIG00005037628) ENSOKIG00005037621 GUSB (ENSOKIG00005037088) ca4a (ENSOKIG00005037012) MTMR4 (ENSOKIG00005031326) hpda (ENSOKIG00005029330) ENSOKIG00005029203 ENSOKIG00005029168 supt4h1 (ENSOKIG00005029125) ENSOKIG00005029108 ENSOKIG00005029099 ENSOKIG00005029084 ENSOKIG00005029035 ##22 YWHAG (ENSOKIG00005029011) ENSOKIG00005029002 hspb1 (ENSOKIG00005028984) ENSOKIG00005028954 rpain (ENSOKIG00005028939) c1qbp (ENSOKIG00005028920) dhx33 (ENSOKIG00005028861) p2rx1 (ENSOKIG00005028810) camkk1a (ENSOKIG00005028794) ATP2A3 (ENSOKIG00005028180) cyb5d2 (ENSOKIG00005028140) ankfy1 (ENSOKIG00005027816) ube2g1a (ENSOKIG00005027766) spns3 (ENSOKIG00005027568) HNRNPAB (ENSOKIG00005027535) Rainbow trout MODERN SPECIES 1 vkorc1l1 (ENSOMYG00000012271) ENSOMYG00000012284 ca4a (ENSOMYG00000012310) ENSOMYG00000058807 MTMR4 (ENSOMYG00000050775) hpda (ENSOMYG00000012394) ENSOMYG00000012405 ENSOMYG00000068894 ENSOMYG00000012338 supt4h1 (ENSOMYG00000012356) ENSOMYG00000066677 ENSOMYG00000064225 ENSOMYG00000058389 ENSOMYG00000073703 ENSOMYG00000059200 ENSOMYG00000064853 ##22 YWHAG (ENSOMYG00000012532) ENSOMYG00000068171 hspb1 (ENSOMYG00000048428) ENSOMYG00000056928 ENSOMYG00000048882 SRRM3 (ENSOMYG00000071000) C1QBP (ENSOMYG00000012574) rpain (ENSOMYG00000012555) ENSOMYG00000012586 p2rx1 (ENSOMYG00000060599) camkk1a (ENSOMYG00000057855) ENSOMYG00000055996 ENSOMYG00000012654 ATP2A3 (ENSOMYG00000073064) cyb5d2 (ENSOMYG00000012681) Huchen MODERN SPECIES 6550 ENSHHUG00000005024 ##22 ENSHHUG00000005014 ##22 Osteoglossocephalai ANCESTRAL SPECIES 7 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00980000199127 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000174983 ENSGT00940000155668 ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 Clupeocephala ANCESTRAL SPECIES 33 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00980000199127 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000174983 ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 Euteleosteomorpha ANCESTRAL SPECIES 35 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00980000199127 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000174983 ENSGT00940000155668.j ENSGT01060000250877 ENSGT00940000155045 ENSGT00940000160156 Acanthomorphata ANCESTRAL SPECIES 14 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.b ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00980000199127 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000174983 ENSGT00940000155668.j ENSGT01060000250877 ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 Euacanthomorphacea ANCESTRAL SPECIES 19 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00980000199127 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000174983 ENSGT00940000155668.j ENSGT01060000250877 ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 Percomorphaceae ANCESTRAL SPECIES 9 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000169226 ENSGT00980000199127 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000174983 ENSGT00940000155668.j ENSGT01060000250877 ENSGT00940000155045 ENSGT00940000160156 Tiger tail seahorse MODERN SPECIES 455 ENSHCOG00000010333 ENSHCOG00000010358 stip1 (ENSHCOG00000010419) rps6ka4 (ENSHCOG00000010506) FLRT1 (ENSHCOG00000010522) zfpl1 (ENSHCOG00000010546) rom1a (ENSHCOG00000010559) frmd8 (ENSHCOG00000010570) ENSHCOG00000010580 ca4a (ENSHCOG00000010648) MTMR4 (ENSHCOG00000010677) hpda (ENSHCOG00000010695) ENSHCOG00000010722 supt4h1 (ENSHCOG00000010739) ENSHCOG00000011006 ENSHCOG00000011053 ##22 YWHAG (ENSHCOG00000011071) hspb1 (ENSHCOG00000011077) ENSHCOG00000011092 ENSHCOG00000011104 c1qbp (ENSHCOG00000011124) dhx33 (ENSHCOG00000011161) p2rx1 (ENSHCOG00000011183) camkk1a (ENSHCOG00000011215) ATP2A3 (ENSHCOG00000011269) ZZEF1 (ENSHCOG00000011860) cyb5d2 (ENSHCOG00000011921) ankfy1 (ENSHCOG00000011942) ube2g1a (ENSHCOG00000011959) spns3 (ENSHCOG00000011991) SPNS2 (ENSHCOG00000012022) Percomorphaceae_B ANCESTRAL SPECIES 10 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00960000186914 ENSGT00980000199127 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000174983 ENSGT00940000155668.j ENSGT01060000250877 ENSGT00940000155045 ENSGT00940000160156 Ovalentaria ANCESTRAL SPECIES 11 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00960000186914 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000174983 ENSGT00940000155668.j ENSGT01060000250877 ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 Ovalentaria_B ANCESTRAL SPECIES 26 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000155228 ENSGT00390000005976.a.a.a ENSGT00940000178429 Cichlidae ANCESTRAL SPECIES 4 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179.f ENSGT00940000155228 ENSGT00390000005976.a.a.a ENSGT00940000178429 Pseudocrenilabrinae ANCESTRAL SPECIES 14 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752.f ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000159210 Pseudocrenilabrinae_A ANCESTRAL SPECIES 21 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752.f ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000159210 Haplochromini ANCESTRAL SPECIES 8 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752.f ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000159210 Burton s mouthbrooder MODERN SPECIES 366 dhrs11a (ENSHBUG00000022109) ggnbp2 (ENSHBUG00000022155) pigw (ENSHBUG00000022160) MYO19 (ENSHBUG00000022172) znhit3 (ENSHBUG00000022191) nupr1a (ENSHBUG00000022221) vkorc1l1 (ENSHBUG00000022231) GUSB (ENSHBUG00000022277) ca4a (ENSHBUG00000022287) MTMR4 (ENSHBUG00000022409) hpda (ENSHBUG00000022467) RNF43 (ENSHBUG00000022487) ENSHBUG00000022507 supt4h1 (ENSHBUG00000022528) ENSHBUG00000022627 ENSHBUG00000022677 ##22 Haplochromini_A ANCESTRAL SPECIES 6 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752.f ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00960000186914 ENSGT00940000169226 ENSGT00940000162625 ENSGT00940000159210 P. nyererei MODERN SPECIES 375 ggnbp2 (ENSPNYG00000017152) pigw (ENSPNYG00000017136) MYO19 (ENSPNYG00000017112) znhit3 (ENSPNYG00000017092) nupr1a (ENSPNYG00000017053) vkorc1l1 (ENSPNYG00000017038) GUSB (ENSPNYG00000017001) ca4a (ENSPNYG00000016968) MTMR4 (ENSPNYG00000016931) hpda (ENSPNYG00000016877) RNF43 (ENSPNYG00000016870) ENSPNYG00000016853 supt4h1 (ENSPNYG00000016837) ENSPNYG00000016804 ENSPNYG00000016783 ENSPNYG00000016764 ##22 YWHAG (ENSPNYG00000016757) hspb1 (ENSPNYG00000016744) ENSPNYG00000016724 ENSPNYG00000016708 Haplochromini_B ANCESTRAL SPECIES 26 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752.f ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00960000186914 ENSGT00940000169226 ENSGT00940000162625 ENSGT00940000159210 Eastern happy MODERN SPECIES 1 ENSACLG00000006354 dhrs11a (ENSACLG00000006348) ggnbp2 (ENSACLG00000006317) pigw (ENSACLG00000006310) MYO19 (ENSACLG00000006286) znhit3 (ENSACLG00000006281) nupr1a (ENSACLG00000006268) vkorc1l1 (ENSACLG00000006263) GUSB (ENSACLG00000005864) ca4a (ENSACLG00000005855) MTMR4 (ENSACLG00000005778) hpda (ENSACLG00000005754) ENSACLG00000005743 supt4h1 (ENSACLG00000005475) ENSACLG00000005363 ENSACLG00000005349 ##22 YWHAG (ENSACLG00000005342) hspb1 (ENSACLG00000005318) ENSACLG00000005306 ENSACLG00000005304 SRRM3 (ENSACLG00000005269) ENSACLG00000005111 ZPLD1 (ENSACLG00000005045) alcama (ENSACLG00000004991) ENSACLG00000004866 CBLB (ENSACLG00000004741) ENSACLG00000004726 akt2l (ENSACLG00000004632) ENSACLG00000004539 ENSACLG00000004523 ENSACLG00000004459 Nile tilapia MODERN SPECIES 1 pigw (ENSONIG00000020869) MYO19 (ENSONIG00000012773) znhit3 (ENSONIG00000012772) nupr1a (ENSONIG00000041561) ENSONIG00000031767 ENSONIG00000033753 vkorc1l1 (ENSONIG00000012771) GUSB (ENSONIG00000012762) ca4a (ENSONIG00000012757) MTMR4 (ENSONIG00000012753) hpda (ENSONIG00000012748) ENSONIG00000038681 ENSONIG00000039780 supt4h1 (ENSONIG00000043158) TSPOAP1 (ENSONIG00000012739) ENSONIG00000012737 ##22 YWHAG (ENSONIG00000012735) hspb1 (ENSONIG00000012734) SRRM3 (ENSONIG00000012732) ENSONIG00000039009 ENSONIG00000037491 ENSONIG00000035301 ENSONIG00000012854 ENSONIG00000030243 ENSONIG00000012860 msna (ENSONIG00000012861) ZC3H12B (ENSONIG00000012867) amer1 (ENSONIG00000040456) ENSONIG00000031583 ENSONIG00000012870 aifm1 (ENSONIG00000012871) Pomacentridae ANCESTRAL SPECIES 42 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00940000164475 ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT01060000250877 ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000155228 ENSGT00390000005976.a.a.a Pomacentridae_A ANCESTRAL SPECIES 3 ENSGT00940000159359 ENSGT00940000157189.c ENSGT00940000156631.B ENSGT00940000156881.h ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000155228 ENSGT00390000005976.a.a.a ENSGT00390000005976.a.a.b Amphiprion ANCESTRAL SPECIES 72 ENSGT00940000159359 ENSGT00940000182231 ENSGT00940000157189.c ENSGT00940000156631.B ENSGT00940000156881.h ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000169226 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000155228 ENSGT00390000005976.a.a.a ENSGT00390000005976.a.a.b Clown anemonefish MODERN SPECIES 786 ENSAOCG00000022578 alcama (ENSAOCG00000022564) ENSAOCG00000022549 ca4a (ENSAOCG00000022543) MTMR4 (ENSAOCG00000022510) ENSAOCG00000022451 hpda (ENSAOCG00000022425) ENSAOCG00000022381 ENSAOCG00000022362 supt4h1 (ENSAOCG00000022349) ENSAOCG00000022317 ENSAOCG00000022205 ##22 YWHAG (ENSAOCG00000022183) hspb1 (ENSAOCG00000002578) TMEM70 (ENSAOCG00000022127) ENSAOCG00000022122 Orange clownfish MODERN SPECIES 6 ENSAPEG00000012630 akt2l (ENSAPEG00000012650) ENSAPEG00000012698 ENSAPEG00000012718 ENSAPEG00000012776 alcama (ENSAPEG00000012831) ENSAPEG00000012846 ca4a (ENSAPEG00000012858) MTMR4 (ENSAPEG00000012940) hpda (ENSAPEG00000013058) ENSAPEG00000013140 ENSAPEG00000013152 supt4h1 (ENSAPEG00000013170) ENSAPEG00000013189 ENSAPEG00000013231 ENSAPEG00000013272 ##22 YWHAG (ENSAPEG00000013287) hspb1 (ENSAPEG00000013295) ENSAPEG00000013307 ENSAPEG00000013328 c1qbp (ENSAPEG00000013414) dhx33 (ENSAPEG00000013599) p2rx1 (ENSAPEG00000013679) camkk1a (ENSAPEG00000013729) ENSAPEG00000013838 ATP2A3 (ENSAPEG00000013892) ZZEF1 (ENSAPEG00000013980) cyb5d2 (ENSAPEG00000014167) ankfy1 (ENSAPEG00000014177) ube2g1a (ENSAPEG00000014285) spns3 (ENSAPEG00000014311) Spiny chromis MODERN SPECIES 672 ENSAPOG00000009921 ##22 YWHAG (ENSAPOG00000009936) hspb1 (ENSAPOG00000009968) SRRM3 (ENSAPOG00000000288) ENSAPOG00000010036 c1qbp (ENSAPOG00000010074) dhx33 (ENSAPOG00000010132) p2rx1 (ENSAPOG00000010175) camkk1a (ENSAPOG00000010216) ENSAPOG00000010368 Atherinomorphae ANCESTRAL SPECIES 14 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00960000186914 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000174983 ENSGT00940000155668.j ENSGT01060000250877 ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 Oryzias ANCESTRAL SPECIES 14 ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01100000263514.A.f.w.b ENSGT00950000183089.c.a.k.b.b.j ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000174983 ENSGT00940000155668.j ENSGT01060000250877 ENSGT00940000155045 ENSGT00940000160156 Oryzias_a ANCESTRAL SPECIES 2 ENSGT00960000193219 ENSGT00390000009724.c ENSGT00940000166102 ENSGT00940000162978.a.a.b ENSGT00940000153556.B ENSGT01020000230351.E.d ENSGT00940000163900 ENSGT00940000157820.a.a ENSGT00940000162439 ENSGT00390000003183 ENSGT00390000018434 ENSGT00940000155093.b ENSGT00390000017523 ENSGT01030000234555.a.a.a.c.a ENSGT00940000153592.B.a ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT00990000203553.c.a.a.b.a.a.a.a.b.n ENSGT01100000263559.A ENSGT00950000183089.c.a.k.b.b.j ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000174983 ENSGT00940000155668.j ENSGT01060000250877 ENSGT00940000155045 Chinese medaka MODERN SPECIES 1129 cltca (ENSOSIG00000022291) ENSOSIG00000022224 atp5l (ENSOSIG00000022221) ftr82 (ENSOSIG00000022213) ftr83 (ENSOSIG00000022204) ruvbl2 (ENSOSIG00000022140) p2rx5 (ENSOSIG00000022107) ENSOSIG00000022095 UBB (ENSOSIG00000022094) CENPV (ENSOSIG00000022092) pigl (ENSOSIG00000022090) ncor1 (ENSOSIG00000022073) zswim7 (ENSOSIG00000022055) adora2b (ENSOSIG00000022048) SPECC1 (ENSOSIG00000022044) ENSOSIG00000022020 ##22 YWHAG (ENSOSIG00000022008) hspb1 (ENSOSIG00000022005) ENSOSIG00000022004 ENSOSIG00000021997 c1qbp (ENSOSIG00000021992) dhx33 (ENSOSIG00000021988) ENSOSIG00000021976 ENSOSIG00000021975 ENSOSIG00000021972 ENSOSIG00000021969 p2rx1 (ENSOSIG00000021966) camkk1a (ENSOSIG00000021963) ENSOSIG00000021956 ATP2A3 (ENSOSIG00000020170) ZZEF1 (ENSOSIG00000019949) Japanese Medaka HdrR MODERN SPECIES 5 ptrh2 (ENSORLG00000012183) cltca (ENSORLG00000012174) ENSORLG00000025547 atp5l (ENSORLG00000012113) ftr82 (ENSORLG00000012100) ftr83 (ENSORLG00000012084) ruvbl2 (ENSORLG00000012078) p2rx5 (ENSORLG00000012047) ubb (ENSORLG00000012032) CENPV (ENSORLG00000012007) pigl (ENSORLG00000029758) ncor1 (ENSORLG00000011992) zswim7 (ENSORLG00000011920) adora2b (ENSORLG00000011912) SPECC1 (ENSORLG00000011906) ENSORLG00000011875 ##22 ENSORLG00000025922 ENSORLG00000026558 ENSORLG00000026242 ENSORLG00000011864 c1qbp (ENSORLG00000011846) dhx33 (ENSORLG00000011817) ENSORLG00000029258 ENSORLG00000027210 ENSORLG00000000697 ENSORLG00000011785 p2rx1 (ENSORLG00000011773) camkk1a (ENSORLG00000011726) ATP2A3 (ENSORLG00000011700) ENSORLG00000022979 ZZEF1 (ENSORLG00000011663) Oryzias_b ANCESTRAL SPECIES 160 ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a Indian medaka MODERN SPECIES 4 spns3 (ENSOMEG00000009660) ube2g1a (ENSOMEG00000009858) ankfy1 (ENSOMEG00000009995) ENSOMEG00000010022 ZZEF1 (ENSOMEG00000010131) ENSOMEG00000010165 ENSOMEG00000010176 ATP2A3 (ENSOMEG00000010194) camkk1a (ENSOMEG00000010256) p2rx1 (ENSOMEG00000010296) ENSOMEG00000010316 ENSOMEG00000010325 ENSOMEG00000010370 ENSOMEG00000010388 dhx33 (ENSOMEG00000010438) ENSOMEG00000010471 ##22 YWHAG (ENSOMEG00000010491) SPECC1 (ENSOMEG00000010532) ENSOMEG00000010552 adora2b (ENSOMEG00000010566) ENSOMEG00000010582 ncor1 (ENSOMEG00000010603) CENPV (ENSOMEG00000010631) pigl (ENSOMEG00000010656) ENSOMEG00000010669 p2rx5 (ENSOMEG00000010703) ruvbl2 (ENSOMEG00000010777) ftr83 (ENSOMEG00000010804) ftr82 (ENSOMEG00000000262) atp5l (ENSOMEG00000010869) nherf4b (ENSOMEG00000010884) Javanese ricefish MODERN SPECIES 5 mogat2 (ENSOJAG00000010849) dgat2 (ENSOJAG00000010779) ENSOJAG00000010765 uvrag (ENSOJAG00000010249) wnt11 (ENSOJAG00000010187) ENSOJAG00000010176 PWWP2A (ENSOJAG00000009835) ENSOJAG00000009750 zgc:110540 (ENSOJAG00000009727) ENSOJAG00000009652 ENSOJAG00000009597 ENSOJAG00000009589 ints2 (ENSOJAG00000007280) ENSOJAG00000007156 ENSOJAG00000007132 ENSOJAG00000007119 ##22 YWHAG (ENSOJAG00000007090) ENSOJAG00000007021 ENSOJAG00000006907 hspb1 (ENSOJAG00000006902) ENSOJAG00000006886 ENSOJAG00000006871 ENSOJAG00000006864 pfdn1 (ENSOJAG00000006851) ttc1 (ENSOJAG00000006821) ENSOJAG00000006291 CSF1R (ENSOJAG00000006055) ENSOJAG00000006027 ENSOJAG00000006008 ENSOJAG00000005970 ENSOJAG00000016629 Cyprinodontiformes ANCESTRAL SPECIES 11 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00960000186914 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000176156 ENSGT00940000155228 Cyprinodontoidei ANCESTRAL SPECIES 5 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000175931 ENSGT00940000169226 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000176156 Poeciliinae ANCESTRAL SPECIES 17 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000175931 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000176156 ENSGT00940000155228 Platyfish MODERN SPECIES 2 dhrs11a (ENSXMAG00000029381) ggnbp2 (ENSXMAG00000005524) pigw (ENSXMAG00000020013) MYO19 (ENSXMAG00000005550) znhit3 (ENSXMAG00000005575) nupr1a (ENSXMAG00000020014) vkorc1l1 (ENSXMAG00000018219) GUSB (ENSXMAG00000018222) ca4a (ENSXMAG00000029936) MTMR4 (ENSXMAG00000005583) hpda (ENSXMAG00000005613) ENSXMAG00000005632 ENSXMAG00000027768 supt4h1 (ENSXMAG00000005633) ENSXMAG00000005635 ENSXMAG00000005653 ##22 YWHAG (ENSXMAG00000026649) hspb1 (ENSXMAG00000022192) ENSXMAG00000005659 SRRM3 (ENSXMAG00000005663) ENSXMAG00000005667 c1qbp (ENSXMAG00000005671) dhx33 (ENSXMAG00000005679) p2rx1 (ENSXMAG00000005701) camkk1a (ENSXMAG00000005744) ATP2A3 (ENSXMAG00000005755) ZZEF1 (ENSXMAG00000005834) cyb5d2 (ENSXMAG00000021541) ankfy1 (ENSXMAG00000005852) ENSXMAG00000023117 ube2g1a (ENSXMAG00000021404) Poecilia ANCESTRAL SPECIES 7 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000175931 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000176156 ENSGT00940000155228 NAME_6 ANCESTRAL SPECIES 16 ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00940000164475 ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000176156 ENSGT00940000155228 ENSGT00390000005976.a.a.a Amazon molly MODERN SPECIES 344 ENSPFOG00000023216 ##22 YWHAG (ENSPFOG00000008978) hspb1 (ENSPFOG00000008995) SRRM3 (ENSPFOG00000009007) MLXIPL (ENSPFOG00000009039) c1qbp (ENSPFOG00000009344) dhx33 (ENSPFOG00000009426) p2rx1 (ENSPFOG00000009666) camkk1a (ENSPFOG00000009838) ATP2A3 (ENSPFOG00000010142) ZZEF1 (ENSPFOG00000010928) cyb5d2 (ENSPFOG00000011722) ankfy1 (ENSPFOG00000011523) ube2g1a (ENSPFOG00000011752) spns3 (ENSPFOG00000011784) SPNS2 (ENSPFOG00000012057) NAME_4 ANCESTRAL SPECIES 5 ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00970000197055 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000175931 ENSGT00940000169226 ENSGT00940000159210 Sheepshead minnow MODERN SPECIES 403 ggnbp2 (ENSCVAG00000013910) pigw (ENSCVAG00000000897) MYO19 (ENSCVAG00000013931) ENSCVAG00000000352 nupr1a (ENSCVAG00000013970) vkorc1l1 (ENSCVAG00000013978) GUSB (ENSCVAG00000014013) ENSCVAG00000014022 ca4a (ENSCVAG00000014028) MTMR4 (ENSCVAG00000014065) hpda (ENSCVAG00000014147) ENSCVAG00000014156 ENSCVAG00000014169 supt4h1 (ENSCVAG00000014190) ENSCVAG00000014265 ENSCVAG00000014295 ##22 YWHAG (ENSCVAG00000014302) hspb1 (ENSCVAG00000014312) ENSCVAG00000014322 mat2b (ENSCVAG00000014345) slc23a1 (ENSCVAG00000014398) ENSCVAG00000014411 PWWP2A (ENSCVAG00000014414) ENSCVAG00000014433 zgc:110540 (ENSCVAG00000000642) Percomorphaceae_C ANCESTRAL SPECIES 10 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00960000186914 ENSGT00980000199127 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000176156 Percomorphaceae_D ANCESTRAL SPECIES 16 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00940000164475 ENSGT00940000162108 #25 ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00960000186914 ENSGT00980000199127 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000155228 Anabantaria ANCESTRAL SPECIES 13 ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00940000164475 ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00960000186914 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000155228 ENSGT00390000005976.a.a.a ENSGT00390000005976.a.a.b Anabantoidei ANCESTRAL SPECIES 12 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00960000186914 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000155228 ENSGT00390000005976.a.a.a ENSGT00390000005976.a.a.b Siamese fighting fish MODERN SPECIES 5 dhrs11a (ENSBSLG00000019603) ggnbp2 (ENSBSLG00000019615) pigw (ENSBSLG00000019631) MYO19 (ENSBSLG00000019637) znhit3 (ENSBSLG00000019660) nupr1a (ENSBSLG00000019662) vkorc1l1 (ENSBSLG00000019664) GUSB (ENSBSLG00000019670) ca4a (ENSBSLG00000019727) MTMR4 (ENSBSLG00000019757) hpda (ENSBSLG00000020674) ENSBSLG00000020749 supt4h1 (ENSBSLG00000020753) ENSBSLG00000020756 ENSBSLG00000020761 ENSBSLG00000020766 ##22 YWHAG (ENSBSLG00000020770) hspb1 (ENSBSLG00000020771) ENSBSLG00000020772 ENSBSLG00000020773 c1qbp (ENSBSLG00000020775) dhx33 (ENSBSLG00000020779) p2rx1 (ENSBSLG00000020792) camkk1a (ENSBSLG00000020815) ENSBSLG00000020824 ATP2A3 (ENSBSLG00000020850) ZZEF1 (ENSBSLG00000021871) cyb5d2 (ENSBSLG00000022432) ankfy1 (ENSBSLG00000022451) ube2g1a (ENSBSLG00000022583) spns3 (ENSBSLG00000022634) Carangaria ANCESTRAL SPECIES 16 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00980000199127 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000155228 ENSGT00390000005976.a.a.a Pleuronectoidei ANCESTRAL SPECIES 27 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000155228 ENSGT00390000005976.a.a.b ENSGT00940000153556.B Tongue sole MODERN SPECIES 10 klf8 (ENSCSEG00000010478) rbm41 (ENSCSEG00000010491) cldn2 (ENSCSEG00000010506) CLIP2 (ENSCSEG00000010519) GTF2IRD1 (ENSCSEG00000010605) dtx2 (ENSCSEG00000010666) tmem132e (ENSCSEG00000010685) ca4a (ENSCSEG00000010729) MTMR4 (ENSCSEG00000010749) hpda (ENSCSEG00000010853) ENSCSEG00000010880 ENSCSEG00000010885 ENSCSEG00000010890 supt4h1 (ENSCSEG00000010897) ENSCSEG00000010919 ENSCSEG00000010953 ##22 YWHAG (ENSCSEG00000010962) ENSCSEG00000010966 hspb1 (ENSCSEG00000010973) SRRM3 (ENSCSEG00000010978) ENSCSEG00000010991 c1qbp (ENSCSEG00000011004) dhx33 (ENSCSEG00000011017) p2rx1 (ENSCSEG00000011044) camkk1a (ENSCSEG00000011071) ATP2A3 (ENSCSEG00000011132) ZZEF1 (ENSCSEG00000011204) cyb5d2 (ENSCSEG00000011274) ankfy1 (ENSCSEG00000011282) ube2g1a (ENSCSEG00000011314) SPNS2 (ENSCSEG00000011335) Turbot MODERN SPECIES 16 dhrs11a (ENSSMAG00000027817) ggnbp2 (ENSSMAG00000000327) pigw (ENSSMAG00000000328) MYO19 (ENSSMAG00000000332) znhit3 (ENSSMAG00000034762) nupr1a (ENSSMAG00000000346) vkorc1l1 (ENSSMAG00000000351) ENSSMAG00000000354 ca4a (ENSSMAG00000000365) MTMR4 (ENSSMAG00000000372) hpda (ENSSMAG00000000394) ENSSMAG00000000408 ENSSMAG00000000413 supt4h1 (ENSSMAG00000037724) ENSSMAG00000000427 ENSSMAG00000000445 ##22 ENSSMAG00000000452 ##22 ENSSMAG00000022653 hspb1 (ENSSMAG00000000460) ENSSMAG00000000472 ENSSMAG00000000485 c1qbp (ENSSMAG00000000492) ENSSMAG00000000497 p2rx1 (ENSSMAG00000000512) camkk1a (ENSSMAG00000000541) ATP2A3 (ENSSMAG00000000561) ZZEF1 (ENSSMAG00000000586) cyb5d2 (ENSSMAG00000000640) ankfy1 (ENSSMAG00000000642) ube2g1a (ENSSMAG00000000657) SPNS2 (ENSSMAG00000000663) Eupercaria ANCESTRAL SPECIES 17 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00960000186914 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000176156 ENSGT00940000155228 Eupecaria_A ANCESTRAL SPECIES 17 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00960000186914 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000176156 ENSGT00940000155228 Ballan wrasse MODERN SPECIES 841 ENSLBEG00000018347 ENSLBEG00000018333 supt4h1 (ENSLBEG00000018308) ENSLBEG00000018117 ENSLBEG00000018011 ##22 Eupecaria_B ANCESTRAL SPECIES ENSGT00950000183145.D.i ##22 Eupecaria_C ANCESTRAL SPECIES ENSGT00950000183145.D.i ##22 Gilthead seabream MODERN SPECIES 4 ggnbp2 (ENSSAUG00010025240) pigw (ENSSAUG00010025244) MYO19 (ENSSAUG00010025247) znhit3 (ENSSAUG00010025319) nupr1a (ENSSAUG00010025320) vkorc1l1 (ENSSAUG00010001495) GUSB (ENSSAUG00010001515) GUSB (ENSSAUG00010001569) ca4a (ENSSAUG00010001721) MTMR4 (ENSSAUG00010001783) hpda (ENSSAUG00010002041) ENSSAUG00010002069 ENSSAUG00010002075 supt4h1 (ENSSAUG00010002081) ENSSAUG00010002091 ENSSAUG00010002112 ##22 YWHAG (ENSSAUG00010002117) hspb1 (ENSSAUG00010002121) SRRM3 (ENSSAUG00010002126) ENSSAUG00010002153 c1qbp (ENSSAUG00010002352) dhx33 (ENSSAUG00010002363) p2rx1 (ENSSAUG00010002372) camkk1a (ENSSAUG00010002379) ATP2A3 (ENSSAUG00010002421) ZZEF1 (ENSSAUG00010002682) cyb5d2 (ENSSAUG00010003511) ankfy1 (ENSSAUG00010003524) ube2g1a (ENSSAUG00010003552) spns3 (ENSSAUG00010003638) SPNS2 (ENSSAUG00010004050) Perciformes ANCESTRAL SPECIES 25 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT00940000164475 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00960000186914 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000155228 Cottioidei ANCESTRAL SPECIES 10 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT00940000164475 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00940000161127 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000155228 ENSGT00390000005976.a.a.a Lumpfish MODERN SPECIES 5 dhrs11a (ENSCLMG00005006816) ggnbp2 (ENSCLMG00005006818) pigw (ENSCLMG00005006819) MYO19 (ENSCLMG00005006826) znhit3 (ENSCLMG00005006895) nupr1a (ENSCLMG00005006896) vkorc1l1 (ENSCLMG00005006897) GUSB (ENSCLMG00005006899) ca4a (ENSCLMG00005006971) MTMR4 (ENSCLMG00005007015) hpda (ENSCLMG00005012571) ENSCLMG00005012575 ENSCLMG00005012577 supt4h1 (ENSCLMG00005012578) TSPOAP1 (ENSCLMG00005012580) ENSCLMG00005012594 ##22 ENSCLMG00005012598 YWHAG (ENSCLMG00005012599) hspb1 (ENSCLMG00005012600) ENSCLMG00005012601 c1qbp (ENSCLMG00005012602) dhx33 (ENSCLMG00005012603) p2rx1 (ENSCLMG00005012604) camkk1a (ENSCLMG00005012605) ATP2A3 (ENSCLMG00005012606) ZZEF1 (ENSCLMG00005014272) cyb5d2 (ENSCLMG00005015627) ankfy1 (ENSCLMG00005015633) ube2g1a (ENSCLMG00005015661) spns3 (ENSCLMG00005015673) SPNS2 (ENSCLMG00005015818) Perciformes_a ANCESTRAL SPECIES 26 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00960000186914 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 ENSGT00940000155228 ENSGT00390000005976.a.a.a Channel bull blenny MODERN SPECIES 5 dhrs11a (ENSCGOG00000021134) ggnbp2 (ENSCGOG00000021081) pigw (ENSCGOG00000021079) MYO19 (ENSCGOG00000021002) znhit3 (ENSCGOG00000021000) nupr1a (ENSCGOG00000020999) vkorc1l1 (ENSCGOG00000020997) GUSB (ENSCGOG00000020803) ca4a (ENSCGOG00000020775) MTMR4 (ENSCGOG00000019100) hpda (ENSCGOG00000019035) ENSCGOG00000019031 ENSCGOG00000019030 supt4h1 (ENSCGOG00000019024) ENSCGOG00000019019 ENSCGOG00000019016 ##22 YWHAG (ENSCGOG00000019009) hspb1 (ENSCGOG00000019001) ENSCGOG00000018999 MLXIPL (ENSCGOG00000018987) c1qbp (ENSCGOG00000018985) dhx33 (ENSCGOG00000018973) ENSCGOG00000018972 p2rx1 (ENSCGOG00000018828) camkk1a (ENSCGOG00000018815) ATP2A3 (ENSCGOG00000018525) ZZEF1 (ENSCGOG00000018390) cyb5d2 (ENSCGOG00000018382) ankfy1 (ENSCGOG00000018337) ube2g1a (ENSCGOG00000018326) spns3 (ENSCGOG00000018037) Tetraodontidae ANCESTRAL SPECIES 28 ENSGT00940000156179 ENSGT00840000129887.g.b ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00940000163549.i.a ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.a.b ENSGT00940000155882.a.a ENSGT00960000186914 ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000153592.B.a ENSGT01030000234555.a.a.a.c.a ENSGT00390000017523 Fugu MODERN SPECIES 8 TMC8 (ENSTRUG00000012697) TMC6 (ENSTRUG00000012500) NOTUM (ENSTRUG00000012438) NOTUM (ENSTRUG00000023602) aspscr1 (ENSTRUG00000012353) ENSTRUG00000012323 ENSTRUG00000012095 MAFG (ENSTRUG00000026437) ENSTRUG00000026592 SIRT7 (ENSTRUG00000011956) pcyt2 (ENSTRUG00000011781) gnav1 (ENSTRUG00000011603) npb (ENSTRUG00000011590) sgsh (ENSTRUG00000011472) slc26a11 (ENSTRUG00000011404) ENSTRUG00000021974 ##22 ENSTRUG00000011378 ##22 ENSTRUG00000028310 ENSTRUG00000027444 ##22 ENSTRUG00000023370 nanos3 (ENSTRUG00000027071) ENSTRUG00000019953 ENSTRUG00000011003 mri1 (ENSTRUG00000010929) c17h19orf53 (ENSTRUG00000025986) ENSTRUG00000020299 ENSTRUG00000010552 khsrp (ENSTRUG00000026489) RFX1 (ENSTRUG00000010058) DCAF15 (ENSTRUG00000010245) TNPO2 (ENSTRUG00000009453) Tetraodon DUPLICATION Tetraodon MODERN SPECIES 26 ENSTNIG00000000820 ENSTNIG00000004199 ENSTNIG00000004198 trim33 (ENSTNIG00000004197) slc66a1 (ENSTNIG00000004196) nr1h5 (ENSTNIG00000004195) ENSTNIG00000004194 TAAR1 (ENSTNIG00000000404) stard10 (ENSTNIG00000004193) ENSTNIG00000002324 LONRF1 (ENSTNIG00000004186) hdlbpa (ENSTNIG00000004185) ccm2 (ENSTNIG00000004176) fam167ab (ENSTNIG00000000402) sh3bgrl2 (ENSTNIG00000001189) ENSTNIG00000004175 ##22 setd7 (ENSTNIG00000004161) fignl1 (ENSTNIG00000004160) ikzf1 (ENSTNIG00000004159) nr2f1a (ENSTNIG00000004157) loxl5b (ENSTNIG00000000510) nmrk2 (ENSTNIG00000000297) ATCAY (ENSTNIG00000004156) ENSTNIG00000004155 ENSTNIG00000004154 PRDM15 (ENSTNIG00000004148) bcap31 (ENSTNIG00000004147) plxna3 (ENSTNIG00000004146) ENSTNIG00000004145 GGA1 (ENSTNIG00000004144) ENSTNIG00000002437 Tetraodon MODERN SPECIES 22 ube2g1a (ENSTNIG00000008566) ankfy1 (ENSTNIG00000008565) dhrs11a (ENSTNIG00000008564) pigw (ENSTNIG00000008563) MYO19 (ENSTNIG00000008562) znhit3 (ENSTNIG00000008561) vkorc1l1 (ENSTNIG00000008560) GUSB (ENSTNIG00000008559) ca4a (ENSTNIG00000008558) MTMR4 (ENSTNIG00000008557) hpda (ENSTNIG00000008556) ENSTNIG00000008555 ENSTNIG00000008554 supt4h1 (ENSTNIG00000008553) ENSTNIG00000008552 ENSTNIG00000008551 ##22 YWHAG (ENSTNIG00000000725) hspb1 (ENSTNIG00000008550) SRRM3 (ENSTNIG00000008549) ENSTNIG00000008548 c1qbp (ENSTNIG00000008547) dhx33 (ENSTNIG00000008546) p2rx1 (ENSTNIG00000008545) camkk1a (ENSTNIG00000008544) ATP2A3 (ENSTNIG00000008543) ZZEF1 (ENSTNIG00000008542) cyb5d2 (ENSTNIG00000008541) SPECC1 (ENSTNIG00000008540) adora2b (ENSTNIG00000008539) zswim7 (ENSTNIG00000008538) ncor1 (ENSTNIG00000008537) Otomorpha ANCESTRAL SPECIES 23 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.b ENSGT00940000155882.a.a ENSGT00980000199127.d ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00940000156747 ENSGT01020000230351.C ENSGT00940000154890.a.a ENSGT00940000155668.j ENSGT00940000155045 ENSGT00940000160156 ENSGT00940000156179 Otophysi ANCESTRAL SPECIES ENSGT00950000183145.D.i ##22 Characiphysae ANCESTRAL SPECIES 65 ENSGT00940000157272.h ENSGT01030000234517.E.c ENSGT00940000158557.l ENSGT00390000017839 ENSGT00940000156747 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.b.c ENSGT00940000155882.a.a ENSGT00980000199127.d ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00390000010822 ENSGT00940000157382 ENSGT00390000013520 ENSGT00390000009552 ENSGT00840000129887.g.b ENSGT00940000166243 ENSGT00560000077232.B.g.b Characiphysae_b ANCESTRAL SPECIES 43 ENSGT00940000157272.h ENSGT01030000234517.E.c ENSGT00940000158557.l ENSGT00390000017839 ENSGT00940000156747 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT00950000183145.D.h.b ##22 ENSGT01090000260061.c.a.c.a.b.c ENSGT00980000199127.d ENSGT00940000162625 ENSGT00940000159210 ENSGT00390000006416 ENSGT00390000018406 ENSGT00390000010822 ENSGT00940000157382 ENSGT00390000013520 ENSGT00390000009552 ENSGT00840000129887.g.b ENSGT00940000166243 ENSGT00560000077232.B.g.b ENSGT00940000164254.b Electric eel MODERN SPECIES 151 ENSEEEG00000002047 CIT (ENSEEEG00000002042) RAB35 (ENSEEEG00000002040) rplp0 (ENSEEEG00000002037) dhx33 (ENSEEEG00000002030) nupr1a (ENSEEEG00000002029) vkorc1l1 (ENSEEEG00000002028) GUSB (ENSEEEG00000002023) ca4a (ENSEEEG00000002021) MTMR4 (ENSEEEG00000000811) hpda (ENSEEEG00000000413) ENSEEEG00000000407 ENSEEEG00000000404 supt4h1 (ENSEEEG00000000394) ENSEEEG00000000257 ENSEEEG00000000182 ##22 ywhag1 (ENSEEEG00000000139) ENSEEEG00000000113 hspb1 (ENSEEEG00000000101) MLXIPL (ENSEEEG00000023773) rpain (ENSEEEG00000023771) c1qbp (ENSEEEG00000023762) znhit3 (ENSEEEG00000023757) MYO19 (ENSEEEG00000023754) pigw (ENSEEEG00000023751) ggnbp2 (ENSEEEG00000023748) dhrs11a (ENSEEEG00000023747) ENSEEEG00000023746 flot2a (ENSEEEG00000023743) ENSEEEG00000023735 eral1 (ENSEEEG00000023729) Clupeiformes ANCESTRAL SPECIES 215 ENSGT00840000129887.g.b ENSGT00390000009552 ENSGT00390000013520 ENSGT00940000157382 ENSGT00390000010822 ENSGT00940000167280 ENSGT00940000157044 ENSGT00390000001752 ENSGT00940000155690.b.a ENSGT00940000158976 ENSGT00530000063474.B.e.b ENSGT00940000154006.b ENSGT00510000048674 ENSGT00390000018559 ENSGT00950000183203.d.d ENSGT00950000183145.D.i ##22 ENSGT01090000260061.c.a.c.a.b ENSGT00940000155882.a.a ENSGT00980000199127.d ENSGT00940000162625 ENSGT00950000183145.D.h.b ##22 Denticle herring MODERN SPECIES 324 RSPH6A (ENSDCDG00000024753) supt4h1 (ENSDCDG00000024748) ENSDCDG00000024706 ENSDCDG00000024690 ##22 YWHAG (ENSDCDG00000024687) hspb1 (ENSDCDG00000024684) ENSDCDG00000024679 SRRM3 (ENSDCDG00000024674) Spotted gar DUPLICATION Spotted gar MODERN SPECIES 121 ENSLOCG00000000518 ##22 Spotted gar MODERN SPECIES 661 ggnbp2 (ENSLOCG00000003189) pigw (ENSLOCG00000017424) MYO19 (ENSLOCG00000003147) znhit3 (ENSLOCG00000003139) ENSLOCG00000003126 ca4a (ENSLOCG00000003098) GUSB (ENSLOCG00000003067) vkorc1l1 (ENSLOCG00000003060) nupr1a (ENSLOCG00000017423) hpda (ENSLOCG00000003037) RNF43 (ENSLOCG00000003019) MTMR4 (ENSLOCG00000003001) HSF5 (ENSLOCG00000002988) supt4h1 (ENSLOCG00000002970) TSPOAP1 (ENSLOCG00000002948) ENSLOCG00000002933 ##22 ywhag1 (ENSLOCG00000002919) hspb1 (ENSLOCG00000002907) SRRM3 (ENSLOCG00000002879) itln3 (ENSLOCG00000002870) ENSLOCG00000002849 MLXIPL (ENSLOCG00000002824) rpain (ENSLOCG00000002804) c1qbp (ENSLOCG00000002779) dhx33 (ENSLOCG00000002764) camkk1a (ENSLOCG00000002745) p2rx1 (ENSLOCG00000002716) ATP2A3 (ENSLOCG00000002683) ZZEF1 (ENSLOCG00000002640) cyb5d2 (ENSLOCG00000002621) ankfy1 (ENSLOCG00000002602) Vertebrata ANCESTRAL SPECIES ENSGT00950000183145.B ##22 Gnathostomata DUPLICATION Gnathostomata DUPLICATION Gnathostomata ANCESTRAL SPECIES 1642 ENSGT00940000164475 ENSGT00950000183145.B.a.a ##22 Euteleostomi ANCESTRAL SPECIES 625 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.B.a.a ##22 Actinopterygii ANCESTRAL SPECIES 528 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.B.a.a ##22 Reedfish MODERN SPECIES 648 kcnd1 (ENSECRG00000018209) ENSECRG00000018261 ##22 Neopterygii DUPLICATION Neopterygii DUPLICATION Neopterygii ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Spotted gar DUPLICATION Spotted gar MODERN SPECIES 253 ENSLOCG00000000271 ENSLOCG00000000246 ENSLOCG00000000222 ENSLOCG00000000203 ENSLOCG00000000176 ENSLOCG00000000162 ##22 ENSLOCG00000000151 ENSLOCG00000017660 ENSLOCG00000000140 Spotted gar MODERN SPECIES 539 ENSLOCG00000008730 ##22 Osteoglossocephalai ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Clupeocephala ANCESTRAL SPECIES 1090 ENSGT00950000183145.B.a.a.a.a ##22 ENSGT00950000183145.B.a.b.c ##22 Otomorpha ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Otophysi ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Characiphysae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Characiphysae_b ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Characoidei ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Mexicana tetra MODERN SPECIES 457 ENSAMXG00000001226 ##22 ENSAMXG00000029305 ##22 ENSAMXG00000038322 ENSAMXG00000033397 #25 ENSAMXG00000036003 ##22 ENSAMXG00000001259 aoc2 (ENSAMXG00000024339) G6PC1 (ENSAMXG00000031108) ENSAMXG00000037103 Clupeiformes ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Atlantic herring MODERN SPECIES 16 ENSCHAG00000010066 ENSCHAG00000010101 ENSCHAG00000010116 ENSCHAG00000010134 ENSCHAG00000010160 ENSCHAG00000010186 ENSCHAG00000010195 ENSCHAG00000010207 ENSCHAG00000010232 ENSCHAG00000010252 ENSCHAG00000010334 ENSCHAG00000010346 ENSCHAG00000010382 ENSCHAG00000010405 ENSCHAG00000010412 ENSCHAG00000010429 ##22 ENSCHAG00000010538 ENSCHAG00000010555 ENSCHAG00000010597 ENSCHAG00000002596 ENSCHAG00000002714 ENSCHAG00000002802 ENSCHAG00000002981 ENSCHAG00000003025 ENSCHAG00000003087 ENSCHAG00000003127 ENSCHAG00000003149 ENSCHAG00000003161 ENSCHAG00000003185 ENSCHAG00000003204 ENSCHAG00000003212 Euteleosteomorpha ANCESTRAL SPECIES 848 ENSGT00950000183145.B.a.a.a.a ##22 ENSGT00950000183145.B.a.b.c ##22 Protacanthopterygii ANCESTRAL SPECIES 625 ENSGT00950000183145.B.a.a.a.a ##22 ENSGT00950000183145.B.a.b.c ##22 Salmoninae DUPLICATION Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a.c.a ##22 Huchen DUPLICATION Huchen MODERN SPECIES 924 ENSHHUG00000029622 sema3gb (ENSHHUG00000029549) slc38a5b (ENSHHUG00000029465) ccdc22 (ENSHHUG00000029451) nt5dc2 (ENSHHUG00000029271) tbc1d25 (ENSHHUG00000029261) ENSHHUG00000029253 ndufb11 (ENSHHUG00000029251) ENSHHUG00000029021 ENSHHUG00000029017 tnnc1b (ENSHHUG00000028882) si:dkey-6n6.1 (ENSHHUG00000028867) bgna (ENSHHUG00000028855) dedd (ENSHHUG00000028849) ugt5e1 (ENSHHUG00000028847) ENSHHUG00000028834 ##22 Huchen MODERN SPECIES 1891 ENSHHUG00000026939 ##22 ENSHHUG00000026934 #25 atp2b3a (ENSHHUG00000025831) nr1h5 (ENSHHUG00000025798) slc66a1 (ENSHHUG00000025791) trim33 (ENSHHUG00000025005) bcas2 (ENSHHUG00000024972) DENND2C (ENSHHUG00000024949) ampd1 (ENSHHUG00000024760) ENSHHUG00000024753 csde1 (ENSHHUG00000024637) Salmoninae_a ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a.c.a ##22 Salmo ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a.c.a ##22 River trout MODERN SPECIES 20 ube4b (ENSSTUG00000036867) nmnat1 (ENSSTUG00000036830) lzic (ENSSTUG00000036796) clstn1 (ENSSTUG00000034081) ctnnbip1 (ENSSTUG00000033967) pik3cd (ENSSTUG00000030393) tmem201 (ENSSTUG00000030238) ENSSTUG00000029984 ndufb11 (ENSSTUG00000029961) ENSSTUG00000029927 tpk2 (ENSSTUG00000029915) tnnc1b (ENSSTUG00000029902) si:dkey-6n6.1 (ENSSTUG00000029886) bgna (ENSSTUG00000029875) dedd (ENSSTUG00000029868) ENSSTUG00000029864 ##22 ENSSTUG00000029849 ##22 atp2b3a (ENSSTUG00000029524) nr1h5 (ENSSTUG00000029484) slc66a1 (ENSSTUG00000029471) trim33 (ENSSTUG00000026996) bcas2 (ENSSTUG00000026929) DENND2C (ENSSTUG00000026891) ampd1 (ENSSTUG00000023265) csde1 (ENSSTUG00000019251) SIKE1 (ENSSTUG00000019109) ENSSTUG00000019100 TMCO4 (ENSSTUG00000019031) vwa1 (ENSSTUG00000019018) ENSSTUG00000019013 otud3 (ENSSTUG00000018995) Salmoninae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a.c.b ##22 Salmoninae_a ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a.c.b ##22 Salmo ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a.c.b ##22 River trout MODERN SPECIES 20 nmnat1 (ENSSTUG00000036830) lzic (ENSSTUG00000036796) clstn1 (ENSSTUG00000034081) ctnnbip1 (ENSSTUG00000033967) pik3cd (ENSSTUG00000030393) tmem201 (ENSSTUG00000030238) ENSSTUG00000029984 ndufb11 (ENSSTUG00000029961) ENSSTUG00000029927 tpk2 (ENSSTUG00000029915) tnnc1b (ENSSTUG00000029902) si:dkey-6n6.1 (ENSSTUG00000029886) bgna (ENSSTUG00000029875) dedd (ENSSTUG00000029868) ENSSTUG00000029864 ##22 ENSSTUG00000029849 ##22 atp2b3a (ENSSTUG00000029524) nr1h5 (ENSSTUG00000029484) slc66a1 (ENSSTUG00000029471) trim33 (ENSSTUG00000026996) bcas2 (ENSSTUG00000026929) DENND2C (ENSSTUG00000026891) ampd1 (ENSSTUG00000023265) csde1 (ENSSTUG00000019251) SIKE1 (ENSSTUG00000019109) ENSSTUG00000019100 TMCO4 (ENSSTUG00000019031) vwa1 (ENSSTUG00000019018) ENSSTUG00000019013 otud3 (ENSSTUG00000018995) TMEM240 (ENSSTUG00000018984) Salmoninae ANCESTRAL SPECIES 2178 ENSGT00950000183145.B.a.a.a.a.d ##22 ENSGT00950000183145.B.a.b.c ##22 Huchen MODERN SPECIES 2435 ENSHHUG00000044239 ENSHHUG00000044238 ##22 ENSHHUG00000044237 ##22 ENSHHUG00000044236 ENSHHUG00000044234 ENSHHUG00000044223 ENSHHUG00000044218 STUB1 (ENSHHUG00000044214) JMJD8 (ENSHHUG00000044187) tmem86b (ENSHHUG00000044184) hspbp1 (ENSHHUG00000044172) Salmoninae_a ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a.d ##22 Oncorhynchus DUPLICATION Oncorhynchus ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a.d.a ##22 Rainbow trout MODERN SPECIES 4 ENSOMYG00000066980 ENSOMYG00000049037 ENSOMYG00000016270 HID1 (ENSOMYG00000016277) ENSOMYG00000016299 ENSOMYG00000071209 USH1G (ENSOMYG00000007907) ENSOMYG00000007920 fa18b (ENSOMYG00000007985) ENSOMYG00000008078 ENSOMYG00000009464 ENSOMYG00000009520 ENSOMYG00000008366 ENSOMYG00000008392 ENSOMYG00000010150 ENSOMYG00000053146 ##22 ENSOMYG00000008456 ENSOMYG00000010279 ENSOMYG00000008575 ENSOMYG00000008710 ENSOMYG00000010436 ENSOMYG00000060503 ENSOMYG00000010487 ENSOMYG00000066516 tmem86b (ENSOMYG00000072088) aspdh (ENSOMYG00000066333) gys1 (ENSOMYG00000009091) pold1 (ENSOMYG00000033108) ENSOMYG00000035800 ENSOMYG00000035814 p-ras (ENSOMYG00000035864) Oncorhynchus_a ANCESTRAL SPECIES 9 ENSGT00940000165955.c.a ENSGT00940000165056.a.c ENSGT00940000166636.e ENSGT00390000003809.b ENSGT00940000164911.f.b ENSGT00940000159173.a ENSGT00440000038972.e ENSGT00390000003022.d ENSGT00950000182945.b.a.a.a.b.b.d.b ENSGT01010000223737 ENSGT00940000153541.B.l ENSGT00940000164248.b.a.d ENSGT00940000155311.C.d.d ENSGT00390000008714.a.z ENSGT00940000166720.c.a ENSGT00950000183145.B.a.a.a.a.d.a ##22 ENSGT00940000162108.b.a.a.b #25 ENSGT00940000165254.c.b.d ENSGT00940000166498.b ENSGT00390000003344.e ENSGT00940000156361.B.e ENSGT00390000014494.wb ENSGT00950000183011.c.a.a.e ENSGT00950000182839.B.a.b ENSGT00390000016950.nb ENSGT00940000168345 ENSGT00940000164988.e ENSGT00940000160734.d.c ENSGT00390000016392.o ENSGT00400000023987.d.c ENSGT00390000013558.a.b.a Chinook salmon DUPLICATION Chinook salmon MODERN SPECIES 19 RAB26 (ENSOTSG00005036058) ENSOTSG00005036059 HMOX2 (ENSOTSG00005036064) dnaja3a (ENSOTSG00005036069) ENSOTSG00005036072 GDE1 (ENSOTSG00005036073) ENSOTSG00005036136 trap1 (ENSOTSG00005036137) ENSOTSG00005036139 ENSOTSG00005036146 PCYT2 (ENSOTSG00005036159) lgals3bp.2 (ENSOTSG00005036172) KCNJ2 (ENSOTSG00005036173) MAP2K6 (ENSOTSG00005036174) BTBD17 (ENSOTSG00005036176) ENSOTSG00005036178 ##22 ENSOTSG00005036181 COG1 (ENSOTSG00005036182) rogdi (ENSOTSG00005036184) ENSOTSG00005036185 ENSOTSG00005002564 ppl (ENSOTSG00005002627) ENSOTSG00005002975 nfil3-6 (ENSOTSG00005003032) ENSOTSG00005003164 ENSOTSG00005003170 SLC44A2 (ENSOTSG00005003262) ENSOTSG00005012064 gcdhb (ENSOTSG00005012066) syce2 (ENSOTSG00005012145) farsa (ENSOTSG00005012149) Chinook salmon MODERN SPECIES 14 ENSOTSG00005039790 sema3gb (ENSOTSG00005039763) slc38a5b (ENSOTSG00005039760) ccdc22 (ENSOTSG00005039759) nt5dc2 (ENSOTSG00005034986) tbc1d25 (ENSOTSG00005034966) ENSOTSG00005034964 ndufb11 (ENSOTSG00005034962) ENSOTSG00005030376 ENSOTSG00005030374 tnnc1b (ENSOTSG00005030372) si:dkey-6n6.1 (ENSOTSG00005030370) bgna (ENSOTSG00005030367) dedd (ENSOTSG00005030365) ugt5e1 (ENSOTSG00005030364) ENSOTSG00005030363 ##22 ENSOTSG00005030362 ##22 ENSOTSG00005030361 #25 atp2b3a (ENSOTSG00005030255) nr1h5 (ENSOTSG00005030253) slc66a1 (ENSOTSG00005030250) trim33 (ENSOTSG00005025969) bcas2 (ENSOTSG00005025940) ampd1 (ENSOTSG00005025785) ENSOTSG00005025760 csde1 (ENSOTSG00005016703) ENSOTSG00005016669 ENSOTSG00005016668 vwa1 (ENSOTSG00005016667) otud3 (ENSOTSG00005016665) TMEM240 (ENSOTSG00005016663) Coho salmon MODERN SPECIES 16 ENSOKIG00005036695 sema3gb (ENSOKIG00005036473) slc38a5b (ENSOKIG00005036430) ccdc22 (ENSOKIG00005039987) nt5dc2 (ENSOKIG00005039515) tbc1d25 (ENSOKIG00005039430) ENSOKIG00005039252 ndufb11 (ENSOKIG00005039225) ENSOKIG00005039170 ENSOKIG00005039112 tnnc1b (ENSOKIG00005039030) si:dkey-6n6.1 (ENSOKIG00005038958) bgna (ENSOKIG00005038938) dedd (ENSOKIG00005038920) ugt5e1 (ENSOKIG00005038913) ENSOKIG00005038896 ##22 ENSOKIG00005038884 #25 ENSOKIG00005038591 nr1h5 (ENSOKIG00005038519) slc66a1 (ENSOKIG00005038499) trim33 (ENSOKIG00005035661) bcas2 (ENSOKIG00005035501) ampd1 (ENSOKIG00005033795) ENSOKIG00005033727 csde1 (ENSOKIG00005029477) ENSOKIG00005029250 ENSOKIG00005029199 ENSOKIG00005029184 otud3 (ENSOKIG00005029170) TMEM240 (ENSOKIG00005029151) ENSOKIG00005029135 Oncorhynchus ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a.d.b ##22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a.d.b ##22 Chinook salmon MODERN SPECIES 14 sema3gb (ENSOTSG00005039763) slc38a5b (ENSOTSG00005039760) ccdc22 (ENSOTSG00005039759) nt5dc2 (ENSOTSG00005034986) tbc1d25 (ENSOTSG00005034966) ENSOTSG00005034964 ndufb11 (ENSOTSG00005034962) ENSOTSG00005030376 ENSOTSG00005030374 tnnc1b (ENSOTSG00005030372) si:dkey-6n6.1 (ENSOTSG00005030370) bgna (ENSOTSG00005030367) dedd (ENSOTSG00005030365) ugt5e1 (ENSOTSG00005030364) ENSOTSG00005030363 ##22 ENSOTSG00005030362 ##22 ENSOTSG00005030361 #25 atp2b3a (ENSOTSG00005030255) nr1h5 (ENSOTSG00005030253) slc66a1 (ENSOTSG00005030250) trim33 (ENSOTSG00005025969) bcas2 (ENSOTSG00005025940) ampd1 (ENSOTSG00005025785) ENSOTSG00005025760 csde1 (ENSOTSG00005016703) ENSOTSG00005016669 ENSOTSG00005016668 vwa1 (ENSOTSG00005016667) otud3 (ENSOTSG00005016665) TMEM240 (ENSOTSG00005016663) SDHB (ENSOTSG00005016660) Acanthomorphata ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Percomorphaceae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Percomorphaceae_C ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Percomorphaceae_D ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Carangaria ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Pleuronectoidei ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Turbot DUPLICATION Turbot MODERN SPECIES 20 TMC6 (ENSSMAG00000005712) ENSSMAG00000005689 aspscr1 (ENSSMAG00000005618) ENSSMAG00000005606 ENSSMAG00000005576 MAFG (ENSSMAG00000028574) ENSSMAG00000022806 SIRT7 (ENSSMAG00000005491) pcyt2 (ENSSMAG00000005469) gnav1 (ENSSMAG00000005458) npb (ENSSMAG00000005425) sgsh (ENSSMAG00000005370) slc26a11 (ENSSMAG00000005312) ENSSMAG00000036348 ENSSMAG00000032899 ##22 ENSSMAG00000031859 ##22 ENSSMAG00000024312 nanos3 (ENSSMAG00000037642) CC2D1A (ENSSMAG00000004649) MRI1 (ENSSMAG00000004636) zgc:136864 (ENSSMAG00000029034) ENSSMAG00000004626 ENSSMAG00000004382 khsrp (ENSSMAG00000004167) DCAF15 (ENSSMAG00000004136) ENSSMAG00000004130 rln3b (ENSSMAG00000004103) ENSSMAG00000004050 ENSSMAG00000004029 ENSSMAG00000004015 ENSSMAG00000003898 Turbot MODERN SPECIES 20 TMC8 (ENSSMAG00000005735) TMC6 (ENSSMAG00000005712) ENSSMAG00000005689 aspscr1 (ENSSMAG00000005618) ENSSMAG00000005606 ENSSMAG00000005576 MAFG (ENSSMAG00000028574) ENSSMAG00000022806 SIRT7 (ENSSMAG00000005491) pcyt2 (ENSSMAG00000005469) gnav1 (ENSSMAG00000005458) npb (ENSSMAG00000005425) sgsh (ENSSMAG00000005370) slc26a11 (ENSSMAG00000005312) ENSSMAG00000036348 ENSSMAG00000032899 ##22 ENSSMAG00000031859 ##22 ENSSMAG00000024312 nanos3 (ENSSMAG00000037642) CC2D1A (ENSSMAG00000004649) MRI1 (ENSSMAG00000004636) zgc:136864 (ENSSMAG00000029034) ENSSMAG00000004626 ENSSMAG00000004382 khsrp (ENSSMAG00000004167) DCAF15 (ENSSMAG00000004136) ENSSMAG00000004130 rln3b (ENSSMAG00000004103) ENSSMAG00000004050 ENSSMAG00000004029 ENSSMAG00000004015 Ovalentaria ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Ovalentaria_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Pomacentridae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Pomacentridae_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Amphiprion ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Clown anemonefish MODERN SPECIES 3456 ENSAOCG00000004808 ENSAOCG00000004709 ENSAOCG00000004698 cntn4 (ENSAOCG00000004670) ENSAOCG00000004593 CFAP57 (ENSAOCG00000002184) ENSAOCG00000004431 cdk5rap1 (ENSAOCG00000004402) ghrh (ENSAOCG00000004390) rpn2 (ENSAOCG00000004375) mybl2b (ENSAOCG00000004342) ift52 (ENSAOCG00000004327) srsf6b (ENSAOCG00000004309) acot8 (ENSAOCG00000004294) ENSAOCG00000004278 ##22 ENSAOCG00000004260 ##22 Cichlidae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.a ##22 Midas cichlid MODERN SPECIES 1824 slc19a3b (ENSACIG00000011721) daw1 (ENSACIG00000011748) sphkap (ENSACIG00000011780) pid1 (ENSACIG00000011846) dner (ENSACIG00000011855) trip12 (ENSACIG00000011919) ENSACIG00000012005 ENSACIG00000012059 RASA2 (ENSACIG00000012064) ENSACIG00000012136 ENSACIG00000012159 ENSACIG00000012169 ENSACIG00000012204 rnf7 (ENSACIG00000012221) GRK7 (ENSACIG00000012233) ENSACIG00000012247 ##22 ccdc96 (ENSACIG00000012259) tada2b (ENSACIG00000012268) grpel1 (ENSACIG00000012282) SORCS2 (ENSACIG00000012327) AFAP1 (ENSACIG00000012422) ABLIM2 (ENSACIG00000012527) zcchc4 (ENSACIG00000012574) pde5ab (ENSACIG00000012649) mad2l1 (ENSACIG00000012709) ENSACIG00000012719 Neopterygii ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b ##22 Osteoglossocephalai ANCESTRAL SPECIES 556 ENSGT00940000163299.B.b.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.B.a.a.a.b ##22 Clupeocephala ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b ##22 Euteleosteomorpha DUPLICATION Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.a ##22 Acanthomorphata ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.a ##22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.a ##22 Percomorphaceae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.a ##22 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.a ##22 Ovalentaria ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.a ##22 Ovalentaria_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.a ##22 Pomacentridae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.a ##22 Bicolor damselfish MODERN SPECIES 1123 ENSSPAG00000022154 ENSSPAG00000022146 CFAP57 (ENSSPAG00000022123) ENSSPAG00000022118 ENSSPAG00000022072 cdk5rap1 (ENSSPAG00000022048) ghrh (ENSSPAG00000022036) rpn2 (ENSSPAG00000021979) mybl2b (ENSSPAG00000021957) ift52 (ENSSPAG00000021927) ENSSPAG00000021913 acot8 (ENSSPAG00000021910) ENSSPAG00000021893 ##22 phactr3b (ENSSPAG00000021853) PPP1R3D (ENSSPAG00000021828) ENSSPAG00000021818 Percomorphaceae_C ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.a ##22 Eupercaria ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.a ##22 Eupecaria_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.a ##22 Eupecaria_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.a ##22 Perciformes ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.a ##22 Perciformes_a ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.a ##22 Pike perch MODERN SPECIES 107 ENSSLUG00000016936 ##22 ENSSLUG00000016932 pyya (ENSSLUG00000016923) mpp2a (ENSSLUG00000016367) ENSSLUG00000016316 ENSSLUG00000016292 ENSSLUG00000016283 ENSSLUG00000016275 smarce1 (ENSSLUG00000016247) ENSSLUG00000016241 rpl23 (ENSSLUG00000016230) CA10 (ENSSLUG00000016198) ENSSLUG00000016187 ENSSLUG00000016183 timm29 (ENSSLUG00000016178) yipf2 (ENSSLUG00000016175) Euteleosteomorpha DUPLICATION Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.a ##22 Protacanthopterygii ANCESTRAL SPECIES 624 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.a.a.b.b.a ##22 Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.a.a ##22 Salmoninae_a ANCESTRAL SPECIES 26 ENSGT00940000165955.c.a ENSGT00940000165056.a.c ENSGT00940000166636.e ENSGT00390000003809.b ENSGT00940000164911.f.b ENSGT00940000159173.a ENSGT00440000038972.e ENSGT00390000003022.d ENSGT00950000182945.b.a.a.a.b.b.d.b ENSGT01010000223737 ENSGT00940000153541.B.l ENSGT00940000164248.b.a.d ENSGT00940000155311.C.d.d ENSGT00390000008714.a.z ENSGT00940000166720.c ENSGT00950000183145.B.a.a.a.b.b.a.a ##22 ENSGT00940000162108.b.a.a.b #25 ENSGT00940000165254.c.b.d ENSGT00940000166498.b ENSGT00390000003344.e ENSGT00940000156361.B.e ENSGT00390000014494.wb ENSGT00950000182931.B.a.b.i ENSGT00950000183011.c.a.a.e ENSGT00950000182839.B.a.b ENSGT00390000016950.nb ENSGT00940000168345 ENSGT00940000164988.e ENSGT00940000160734.d.c ENSGT00390000016392.o ENSGT00400000023987.d.c Salmo ANCESTRAL SPECIES 4 ENSGT00940000165955.c.a ENSGT00940000165056.a.c ENSGT00940000166636.e ENSGT00390000003809.b ENSGT00940000164911.f.b ENSGT00940000159173.a ENSGT00440000038972.e ENSGT00390000003022.d ENSGT00950000182945.b.a.a.a.b.b.d.b ENSGT01010000223737 ENSGT00940000153541.B.l ENSGT00940000164248.b.a.d ENSGT00940000155311.C.d.d ENSGT00390000008714.a.z ENSGT00940000166720.c ENSGT00950000183145.B.a.a.a.b.b.a.a ##22 ENSGT00940000162108.b.a.a.b #25 ENSGT00940000165254.c.b.d ENSGT00940000166498.b ENSGT00390000003344.e ENSGT00940000156361.B.e ENSGT00390000014494.wb ENSGT00950000182931.B.a.b.i ENSGT00950000183011.c.a.a.e ENSGT00950000182839.B.a.b ENSGT00390000016950.nb ENSGT00940000168345 ENSGT00940000164988.e ENSGT00940000160734.d.c ENSGT00390000016392.o ENSGT00400000023987.d.c Atlantic salmon MODERN SPECIES 4 ENSSSAG00000056415 slc38a5b (ENSSSAG00000090048) ccdc22 (ENSSSAG00000056072) nt5dc2 (ENSSSAG00000050813) tbc1d25 (ENSSSAG00000050744) ENSSSAG00000050710 ENSSSAG00000050723 ENSSSAG00000103887 ENSSSAG00000090804 ENSSSAG00000050694 TNNC1 (ENSSSAG00000050683) si:dkey-6n6.1 (ENSSSAG00000050669) bgna (ENSSSAG00000050657) ugt5e1 (ENSSSAG00000120375) dedd (ENSSSAG00000050645) ENSSSAG00000050294 ##22 ENSSSAG00000050244 #25 atp2b3a (ENSSSAG00000046326) nr1h5 (ENSSSAG00000046197) slc66a1 (ENSSSAG00000046165) trim33 (ENSSSAG00000044852) BCAS2 (ENSSSAG00000044819) DENND2C (ENSSSAG00000044715) ampd1 (ENSSSAG00000041446) ENSSSAG00000041387 CSDE1 (ENSSSAG00000040234) ENSSSAG00000100340 ENSSSAG00000040131 ENSSSAG00000040110 ENSSSAG00000040009 ENSSSAG00000098430 River trout MODERN SPECIES 23 ENSSTUG00000024213 sema3gb (ENSSTUG00000024027) slc38a5b (ENSSTUG00000023531) ccdc22 (ENSSTUG00000023508) nt5dc2 (ENSSTUG00000021777) tbc1d25 (ENSSTUG00000021677) ENSSTUG00000021614 ndufb11 (ENSSTUG00000021599) ENSSTUG00000021577 ENSSTUG00000021555 tnnc1b (ENSSTUG00000021543) si:dkey-6n6.1 (ENSSTUG00000021535) bgna (ENSSTUG00000021521) dedd (ENSSTUG00000021516) ugt5e1 (ENSSTUG00000021512) ENSSTUG00000021047 ##22 atp2b3a (ENSSTUG00000018031) nr1h5 (ENSSTUG00000017892) slc66a1 (ENSSTUG00000017887) trim33 (ENSSTUG00000017220) bcas2 (ENSSTUG00000017147) DENND2C (ENSSTUG00000017090) ampd1 (ENSSTUG00000015125) ENSSTUG00000015046 csde1 (ENSSTUG00000014028) ENSSTUG00000013986 ENSSTUG00000013975 vwa1 (ENSSTUG00000013963) otud3 (ENSSTUG00000013950) TMEM240 (ENSSTUG00000013941) SDHB (ENSSTUG00000013847) Oncorhynchus ANCESTRAL SPECIES 7 ENSGT00940000165955.c.a ENSGT00940000165056.a.c ENSGT00940000166636.e ENSGT00390000003809.b ENSGT00940000164911.f.b ENSGT00940000159173.a ENSGT00440000038972.e ENSGT00390000003022.d ENSGT00950000182945.b.a.a.a.b.b.d.b ENSGT01010000223737 ENSGT00940000153541.B.l ENSGT00940000164248.b.a.d ENSGT00940000155311.C.d.d ENSGT00390000008714.a.z ENSGT00940000166720.c.a ENSGT00950000183145.B.a.a.a.b.b.a.a ##22 ENSGT00940000162108.b.a.a.b #25 ENSGT00940000165254.c.b.d ENSGT00940000166498.b ENSGT00390000003344.e ENSGT00940000156361.B.e ENSGT00390000014494.wb ENSGT00950000182931.B.a.b.i ENSGT00950000183011.c.a.a.e ENSGT00950000182839.B.a.b ENSGT00390000016950.nb ENSGT00940000168345 ENSGT00940000164988.e ENSGT00940000160734.d.c ENSGT00390000016392.o ENSGT00400000023987.d.c Rainbow trout MODERN SPECIES 7 sema3gb (ENSOMYG00000015925) slc38a5b (ENSOMYG00000015755) ccdc22 (ENSOMYG00000015057) nt5dc2 (ENSOMYG00000011687) tbc1d25 (ENSOMYG00000011487) ENSOMYG00000011408 ENSOMYG00000011406 ENSOMYG00000011401 ENSOMYG00000011367 ENSOMYG00000011349 si:dkey-6n6.1 (ENSOMYG00000011334) bgna (ENSOMYG00000011324) ENSOMYG00000051380 dedd (ENSOMYG00000011301) ugt5e1 (ENSOMYG00000011300) ENSOMYG00000010978 ##22 ENSOMYG00000010761 nr1h5 (ENSOMYG00000010673) slc66a1 (ENSOMYG00000010662) trim33 (ENSOMYG00000008606) bcas2 (ENSOMYG00000007601) ENSOMYG00000007569 ampd1 (ENSOMYG00000007327) ENSOMYG00000007006 CSDE1 (ENSOMYG00000006470) ENSOMYG00000005690 ENSOMYG00000058425 ENSOMYG00000005577 ENSOMYG00000005553 ENSOMYG00000005510 DHSB (ENSOMYG00000005473) Huchen MODERN SPECIES 10315 ENSHHUG00000010372 ##22 Salmoninae ANCESTRAL SPECIES 166 ENSGT00950000183179.b.a ENSGT00940000159001 ENSGT00950000183086.a.a.a.l ENSGT00940000161133 ENSGT00940000159079 ENSGT00940000164281 ENSGT00440000038972.f ENSGT00390000003022.c ENSGT00950000182945.b.a.a.a.b.b.d.a ENSGT00390000016016.B ENSGT00940000153541.B.k ENSGT00940000164248.b.a.c ENSGT00940000155311.C.d.c ENSGT00390000008714.a.y ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.a.a.b.b.a.b ##22 ENSGT00940000165254.c.b.c ENSGT00940000166498.a ENSGT00390000003344.f ENSGT00940000156361.B.f ENSGT00390000014494.xb ENSGT00950000182931.B.a.b.j ENSGT00950000183011.c.a.a.f ENSGT00390000016950.ob ENSGT00390000018003.a ENSGT00940000154484.A ENSGT00390000001400 ENSGT00940000160734.d.d ENSGT00390000016392.p ENSGT00400000023987.d.d ENSGT00730000111059.b Salmoninae_a ANCESTRAL SPECIES 14 ENSGT00390000009300.a.g ENSGT00950000183179.b.a ENSGT00940000159001 ENSGT00950000183086.a.a.a.k.a.b ENSGT00940000161133 ENSGT00940000159079 ENSGT00940000164281 ENSGT00440000038972.f ENSGT00390000003022.c ENSGT00950000182945.b.a.a.a.b.b.d.a ENSGT00390000016016.B ENSGT00940000153541.B.k ENSGT00940000164248.b.a.c ENSGT00940000155311.C.d.c ENSGT00390000008714.a.y ENSGT00950000183145.B.a.a.a.b.b.a.b ##22 ENSGT00940000165254.c.b.c ENSGT00940000166498.a ENSGT00390000003344.f ENSGT00940000156361.B.f ENSGT00390000014494.xb ENSGT00950000182931.B.a.b.j ENSGT00950000183011.c.a.a.f ENSGT00390000016950.ob ENSGT00390000018003.a ENSGT00940000154484.A ENSGT00390000001400 ENSGT00940000160734.d.d ENSGT00390000016392.p ENSGT00400000023987.d.d ENSGT00730000111059.b Oncorhynchus ANCESTRAL SPECIES 20 ENSGT00950000183179.b.a ENSGT00940000159001 ENSGT00950000183086.a.a.a.k.a.b ENSGT00940000161133 ENSGT00940000159079 ENSGT00940000164281 ENSGT00440000038972.f ENSGT00390000003022.c ENSGT00950000182945.b.a.a.a.b.b.d.a ENSGT00390000016016.B ENSGT00940000153541.B.k ENSGT00940000164248.b.a.c ENSGT00940000155311.C.d.c ENSGT00390000008714.a.y ENSGT00940000166720.c.b ENSGT00950000183145.B.a.a.a.b.b.a.b ##22 ENSGT00940000165254.c.b.c ENSGT00940000166498.a ENSGT00390000003344.f ENSGT00940000156361.B.f ENSGT00390000014494.xb ENSGT00950000182931.B.a.b.j ENSGT00950000183011.c.a.a.f ENSGT00390000016950.ob ENSGT00390000018003.a ENSGT00940000164988.f ENSGT00390000001400 ENSGT00940000160734.d.d ENSGT00390000016392.p ENSGT00400000023987.d.d ENSGT00730000111059.b Oncorhynchus_a ANCESTRAL SPECIES 7 ENSGT00390000009300.a.g ENSGT00950000183179.b.a ENSGT00940000159001 ENSGT00950000183086.a.a.a.k.a.a ENSGT00940000161133 ENSGT00940000159079 ENSGT00940000164281 ENSGT00440000038972.f ENSGT00390000003022.c ENSGT00950000182945.b.a.a.a.b.b.d.a ENSGT00390000016016.B ENSGT00940000153541.B.k ENSGT00940000164248.b.a.c ENSGT00940000155311.C.d.c ENSGT00390000008714.a.y ENSGT00950000183145.B.a.a.a.b.b.a.b ##22 ENSGT00940000165254.c.b.c ENSGT00940000166498.a ENSGT00390000003344.f ENSGT00940000156361.B.f ENSGT00390000014494.xb ENSGT00950000182931.B.a.b.j ENSGT00950000183011.c.a.a.f ENSGT00390000016950.ob ENSGT00390000018003.a ENSGT00940000164988.f ENSGT00390000001400 ENSGT00940000160734.d.d ENSGT00390000016392.p ENSGT00400000023987.d.d ENSGT00730000111059.b Coho salmon MODERN SPECIES 8 ube4b (ENSOKIG00005013102) ENSOKIG00005015503 nmnat1 (ENSOKIG00005015509) lzic (ENSOKIG00005015522) clstn1 (ENSOKIG00005015716) ctnnbip1 (ENSOKIG00005018953) pik3cd (ENSOKIG00005019186) tmem201 (ENSOKIG00005023079) ndufb11 (ENSOKIG00005023095) ENSOKIG00005023119 ENSOKIG00005023219 tpk2 (ENSOKIG00005023279) si:dkey-6n6.1 (ENSOKIG00005023298) bgna (ENSOKIG00005023311) dedd (ENSOKIG00005023393) ENSOKIG00005023421 ##22 atp2b3a (ENSOKIG00005023460) nr1h5 (ENSOKIG00005023937) slc66a1 (ENSOKIG00005023974) trim33 (ENSOKIG00005024124) bcas2 (ENSOKIG00005024913) DENND2C (ENSOKIG00005024971) ampd1 (ENSOKIG00005025384) CSDE1 (ENSOKIG00005028925) SIKE1 (ENSOKIG00005030031) ENSOKIG00005030049 ENSOKIG00005030087 vwa1 (ENSOKIG00005030211) otud3 (ENSOKIG00005030224) TMEM240 (ENSOKIG00005030252) ATAD3A (ENSOKIG00005030311) Chinook salmon MODERN SPECIES 37 ube4b (ENSOTSG00005046247) nmnat1 (ENSOTSG00005046240) lzic (ENSOTSG00005046239) clstn1 (ENSOTSG00005045540) ctnnbip1 (ENSOTSG00005045539) pik3cd (ENSOTSG00005043597) tmem201 (ENSOTSG00005043558) ENSOTSG00005043540 ndufb11 (ENSOTSG00005043538) ENSOTSG00005043536 tpk2 (ENSOTSG00005043535) tnnc1b (ENSOTSG00005043534) si:dkey-6n6.1 (ENSOTSG00005043532) bgna (ENSOTSG00005043524) dedd (ENSOTSG00005043522) ENSOTSG00005043516 ##22 atp2b3a (ENSOTSG00005043249) nr1h5 (ENSOTSG00005043242) slc66a1 (ENSOTSG00005043237) trim33 (ENSOTSG00005042943) bcas2 (ENSOTSG00005042938) DENND2C (ENSOTSG00005042936) ampd1 (ENSOTSG00005038526) csde1 (ENSOTSG00005031225) SIKE1 (ENSOTSG00005031191) ENSOTSG00005031187 TMCO4 (ENSOTSG00005031184) vwa1 (ENSOTSG00005031181) otud3 (ENSOTSG00005031179) TMEM240 (ENSOTSG00005031178) ATAD3A (ENSOTSG00005031116) Rainbow trout MODERN SPECIES 30 lzic (ENSOMYG00000022564) clstn1 (ENSOMYG00000023258) ctnnbip1 (ENSOMYG00000026962) pik3cd (ENSOMYG00000027661) tmem201 (ENSOMYG00000030924) ENSOMYG00000030982 ENSOMYG00000031076 ENSOMYG00000058175 ENSOMYG00000031085 tpk2 (ENSOMYG00000031104) ENSOMYG00000031114 si:dkey-6n6.1 (ENSOMYG00000031124) bgna (ENSOMYG00000031157) dedd (ENSOMYG00000031198) ugt5e1 (ENSOMYG00000064227) ENSOMYG00000031207 ##22 ENSOMYG00000031339 nr1h5 (ENSOMYG00000031711) slc66a1 (ENSOMYG00000031731) trim33 (ENSOMYG00000032150) bcas2 (ENSOMYG00000061830) DENND2C (ENSOMYG00000039900) ampd1 (ENSOMYG00000034377) CSDE1 (ENSOMYG00000040030) ENSOMYG00000040303 ENSOMYG00000040314 ENSOMYG00000040370 vwa1 (ENSOMYG00000040473) otud3 (ENSOMYG00000040481) ENSOMYG00000040487 ENSOMYG00000040535 Salmo ANCESTRAL SPECIES 16 ENSGT00390000009300.a.g ENSGT00950000183179.b.a ENSGT00940000159001 ENSGT00950000183086.a.a.a.l ENSGT00940000161133 ENSGT00940000159079 ENSGT00940000164281 ENSGT00440000038972.f ENSGT00390000003022.c ENSGT00950000182945.b.a.a.a.b.b.d.a ENSGT00390000016016.B ENSGT00940000153541.B.k ENSGT00940000164248.b.a.c ENSGT00940000155311.C.d.c ENSGT00390000008714.a.y ENSGT00950000183145.B.a.a.a.b.b.a.b ##22 ENSGT00940000165254.c.b.c ENSGT00940000166498.a ENSGT00390000003344.f ENSGT00940000156361.B.f ENSGT00390000014494.xb ENSGT00950000182931.B.a.b.j ENSGT00950000183011.c.a.a.f ENSGT00390000016950.ob ENSGT00390000018003.a ENSGT00940000154484.A ENSGT00390000001400 ENSGT00940000160734.d.d ENSGT00390000016392.p ENSGT00400000023987.d.d ENSGT00730000111059.b Atlantic salmon MODERN SPECIES 6 ube4b (ENSSSAG00000079808) ENSSSAG00000113638 nmnat1 (ENSSSAG00000080168) lzic (ENSSSAG00000080170) clstn1 (ENSSSAG00000080237) pik3cd (ENSSSAG00000005984) tmem201 (ENSSSAG00000007232) ENSSSAG00000007245 ENSSSAG00000007302 tpk2 (ENSSSAG00000007310) ENSSSAG00000007332 si:dkey-6n6.1 (ENSSSAG00000007349) ENSSSAG00000097196 bgna (ENSSSAG00000105101) dedd (ENSSSAG00000007365) ENSSSAG00000007370 ##22 atp2b3a (ENSSSAG00000007463) ENSSSAG00000085339 nr1h5 (ENSSSAG00000022951) ENSSSAG00000119583 pqlc2 (ENSSSAG00000023170) ENSSSAG00000114266 trim33 (ENSSSAG00000025557) dennd2c (ENSSSAG00000043382) ampd1 (ENSSSAG00000043594) CSDE1 (ENSSSAG00000048052) sike1 (ENSSSAG00000088203) ENSSSAG00000048754 tmco4 (ENSSSAG00000048800) vwa1 (ENSSSAG00000049613) otud3 (ENSSSAG00000049625) Huchen MODERN SPECIES 37 nmnat1 (ENSHHUG00000017044) lzic (ENSHHUG00000017052) ENSHHUG00000017060 clstn1 (ENSHHUG00000017074) ENSHHUG00000017132 ctnnbip1 (ENSHHUG00000017147) pik3cd (ENSHHUG00000017171) tmem201 (ENSHHUG00000018823) ENSHHUG00000018840 ENSHHUG00000019020 tpk2 (ENSHHUG00000019213) ENSHHUG00000019250 bgna (ENSHHUG00000019257) dedd (ENSHHUG00000019264) ENSHHUG00000019271 #22 ENSHHUG00000019279 ##22 atp2b3a (ENSHHUG00000019305) nr1h5 (ENSHHUG00000019636) slc66a1 (ENSHHUG00000019646) trim33 (ENSHHUG00000019655) bcas2 (ENSHHUG00000019878) DENND2C (ENSHHUG00000019892) ampd1 (ENSHHUG00000019906) csde1 (ENSHHUG00000020222) SIKE1 (ENSHHUG00000021017) ENSHHUG00000021025 TMCO4 (ENSHHUG00000021040) vwa1 (ENSHHUG00000021071) otud3 (ENSHHUG00000021079) TMEM240 (ENSHHUG00000021088) ATAD3A (ENSHHUG00000021100) Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.b ##22 Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.b ##22 Salmoninae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.b ##22 Salmoninae_a ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.b ##22 Oncorhynchus ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.b ##22 Oncorhynchus_a ANCESTRAL SPECIES 42 ENSGT00510000050089.a.a.p.a ENSGT00510000050089.a.a.o ENSGT00950000182858.A.b.b.g.a.i.c.a.c ENSGT00950000182858.A.b.b.g.a.i.c.a.d ENSGT00940000157746.f ENSGT00390000004038 ENSGT00530000063991.a.a ENSGT00940000154811.A.m.a ENSGT00940000155348.B.c.d ENSGT00940000160643.i.d ENSGT01050000245366.a ENSGT00940000165576.a.b.e.a ENSGT00950000183145.A.a.m.b ##22 ENSGT00950000183145.B.a.a.a.b.b.b ##22 ENSGT00940000154360.B.b ENSGT00940000153653.a.a.o ENSGT00390000017328.a.a.l ENSGT00940000175578.a.a ENSGT00940000158833.a.a.c ENSGT00940000156584.e.b.d.a ENSGT01100000263525.b.a.l ENSGT00390000006679.b.l ENSGT01030000234646.B.a.a.a.a.b.e ENSGT00940000153704.B.d.b.a.a ENSGT00940000157439.a.c ENSGT00940000154534.b.a.j ENSGT00390000004405.b.d.b.a.b ENSGT00950000182892.a.b.a.b.b.d ENSGT00940000154152.b.a.b Coho salmon MODERN SPECIES 26 ENSOKIG00005013790 ENSOKIG00005013834 ENSOKIG00005013849 ENSOKIG00005013870 ENSOKIG00005013884 GBGT1 (ENSOKIG00005013905) ITGA3 (ENSOKIG00005001715) ccdc103 (ENSOKIG00005001757) FAM187A (ENSOKIG00005001760) abi3a (ENSOKIG00005001762) mpp2a (ENSOKIG00005001791) pyya (ENSOKIG00005001834) ENSOKIG00005001847 rarab (ENSOKIG00005001924) ENSOKIG00005002125 ##22 ENSOKIG00005002162 ##22 ENSOKIG00005002185 ENSOKIG00005002224 ENSOKIG00005002298 ENSOKIG00005002309 PPP1R9B (ENSOKIG00005002344) col1a1a (ENSOKIG00005002517) ENSOKIG00005002573 ENSOKIG00005002598 pdk2b (ENSOKIG00005002702) ENSOKIG00005002828 prr15la (ENSOKIG00005002918) copz2 (ENSOKIG00005002937) nfe2l1a (ENSOKIG00005002972) ENSOKIG00005002979 cbx1a (ENSOKIG00005002994) Chinook salmon MODERN SPECIES 33 ENSOTSG00005010831 ENSOTSG00005010846 ENSOTSG00005010850 ENSOTSG00005010851 ENSOTSG00005010852 ENSOTSG00005010853 ENSOTSG00005010855 ENSOTSG00005010858 ITGA3 (ENSOTSG00005010859) ccdc103 (ENSOTSG00005010862) FAM187A (ENSOTSG00005010863) abi3a (ENSOTSG00005010864) mpp2a (ENSOTSG00005010868) ENSOTSG00005010915 rarab (ENSOTSG00005010921) ENSOTSG00005010934 ##22 ENSOTSG00005010962 psmd3 (ENSOTSG00005010966) ENSOTSG00005010987 PPP1R9B (ENSOTSG00005010989) col1a1a (ENSOTSG00005010996) ENSOTSG00005011182 ENSOTSG00005011183 pdk2b (ENSOTSG00005011186) ENSOTSG00005011317 OSBPL7 (ENSOTSG00005011327) prr15la (ENSOTSG00005011351) copz2 (ENSOTSG00005011352) nfe2l1a (ENSOTSG00005011359) cbx1a (ENSOTSG00005011360) hoxb1a (ENSOTSG00005011361) Acanthomorphata ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.b ##22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.b ##22 Percomorphaceae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.b ##22 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.b ##22 Ovalentaria ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.b ##22 Atherinomorphae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.b ##22 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.b ##22 Cyprinodontoidei ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.b ##22 NAME_4 ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b.b.b ##22 Sheepshead minnow MODERN SPECIES 2086 ENSCVAG00000018277 ##22 Otomorpha ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.a.b ##22 Clupeiformes ANCESTRAL SPECIES 970 ENSGT00940000164475 ENSGT00950000183145.B.a.a.a.b ##22 Atlantic herring DUPLICATION Atlantic herring DUPLICATION Atlantic herring DUPLICATION Atlantic herring DUPLICATION Atlantic herring MODERN SPECIES 16 ENSCHAG00000010134 ENSCHAG00000010116 ENSCHAG00000010101 ENSCHAG00000010066 ENSCHAG00000010041 ENSCHAG00000009991 ENSCHAG00000009962 ##22 ENSCHAG00000009917 ENSCHAG00000009890 ENSCHAG00000009867 ENSCHAG00000009843 ENSCHAG00000009832 ENSCHAG00000009820 ENSCHAG00000009792 ENSCHAG00000009778 ENSCHAG00000009731 ##22 ENSCHAG00000009717 ENSCHAG00000009711 ENSCHAG00000009702 METRNL (ENSCHAG00000009699) PARP11 (ENSCHAG00000009689) ENSCHAG00000009681 ENSCHAG00000009678 ENSCHAG00000009666 ENSCHAG00000009657 ENSCHAG00000009652 ENSCHAG00000009639 ENSCHAG00000009635 ENSCHAG00000009632 ENSCHAG00000009622 ENSCHAG00000009610 Atlantic herring MODERN SPECIES 8 ENSCHAG00000019247 ENSCHAG00000019264 ENSCHAG00000019270 ENSCHAG00000019277 ENSCHAG00000019287 ENSCHAG00000019295 ENSCHAG00000019305 ENSCHAG00000019316 PTCHD3 (ENSCHAG00000019334) ENSCHAG00000019342 rdh12l (ENSCHAG00000019492) ENSCHAG00000019604 STEAP1 (ENSCHAG00000019650) ENSCHAG00000019665 ENSCHAG00000019671 ##22 ENSCHAG00000019687 ##22 C1QL3 (ENSCHAG00000019694) RSU1 (ENSCHAG00000019718) CUBN (ENSCHAG00000019789) vim (ENSCHAG00000021373) PDE1C (ENSCHAG00000021426) ENSCHAG00000021730 ENSCHAG00000021745 neurod6a (ENSCHAG00000021758) EIF1B (ENSCHAG00000021761) ENSCHAG00000021773 riok3 (ENSCHAG00000021832) ENSCHAG00000022550 CABLES1 (ENSCHAG00000022563) ENSCHAG00000022587 ENSCHAG00000022605 Atlantic herring MODERN SPECIES 4 znhit1 (ENSCHAG00000003213) TWNK (ENSCHAG00000003234) lzts2a (ENSCHAG00000003255) pdzd7a (ENSCHAG00000003277) ENSCHAG00000003308 sfxn3 (ENSCHAG00000003340) ENSCHAG00000003531 ENSCHAG00000003568 selenou1a (ENSCHAG00000003586) mat1a (ENSCHAG00000003665) zgc:154058 (ENSCHAG00000004540) ENSCHAG00000004571 tlr4ba (ENSCHAG00000004588) ENSCHAG00000004944 ENSCHAG00000004980 ENSCHAG00000004993 ##22 ENSCHAG00000005021 reep3a (ENSCHAG00000005061) cyp26c1 (ENSCHAG00000005069) slc22a15 (ENSCHAG00000005090) kif11 (ENSCHAG00000005141) rgs7a (ENSCHAG00000005351) GREM2 (ENSCHAG00000005708) ENSCHAG00000005716 ENSCHAG00000005757 ENSCHAG00000005765 CHRM3 (ENSCHAG00000005774) p4ha1b (ENSCHAG00000005865) actn2b (ENSCHAG00000008103) ENSCHAG00000010078 tial1 (ENSCHAG00000017561) Atlantic herring MODERN SPECIES 9 ENSCHAG00000012761 ENSCHAG00000012683 ENSCHAG00000012654 ENSCHAG00000012637 ENSCHAG00000012623 ENSCHAG00000012571 lgi2a (ENSCHAG00000012478) sepsecs (ENSCHAG00000012397) ACO1 (ENSCHAG00000011991) ENSCHAG00000011968 mad2l1 (ENSCHAG00000011955) pde5ab (ENSCHAG00000011553) ENSCHAG00000011501 ENSCHAG00000011483 ENSCHAG00000011461 ENSCHAG00000011449 ##22 ENSCHAG00000011426 ENSCHAG00000011403 ENSCHAG00000011387 ENSCHAG00000011373 ENSCHAG00000011359 ENSCHAG00000011343 ENSCHAG00000011327 ENSCHAG00000011307 ENSCHAG00000011301 ENSCHAG00000011292 nitr2a (ENSCHAG00000010911) ENSCHAG00000010891 RAP1GDS1 (ENSCHAG00000010733) tspan5a (ENSCHAG00000010440) ENSCHAG00000008727 Atlantic herring MODERN SPECIES 8 ENSCHAG00000019193 ENSCHAG00000019247 ENSCHAG00000019264 ENSCHAG00000019270 ENSCHAG00000019277 ENSCHAG00000019287 ENSCHAG00000019295 ENSCHAG00000019305 ENSCHAG00000019316 PTCHD3 (ENSCHAG00000019334) ENSCHAG00000019342 rdh12l (ENSCHAG00000019492) ENSCHAG00000019604 STEAP1 (ENSCHAG00000019650) ENSCHAG00000019665 ENSCHAG00000019671 ##22 ENSCHAG00000019687 ##22 C1QL3 (ENSCHAG00000019694) RSU1 (ENSCHAG00000019718) CUBN (ENSCHAG00000019789) vim (ENSCHAG00000021373) PDE1C (ENSCHAG00000021426) ENSCHAG00000021730 ENSCHAG00000021745 neurod6a (ENSCHAG00000021758) EIF1B (ENSCHAG00000021761) ENSCHAG00000021773 riok3 (ENSCHAG00000021832) ENSCHAG00000022550 CABLES1 (ENSCHAG00000022563) ENSCHAG00000022587 Neopterygii ANCESTRAL SPECIES 432 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.B.a.a.b ##22 Spotted gar MODERN SPECIES 249 ENSLOCG00000000327 ENSLOCG00000000365 ENSLOCG00000000406 ENSLOCG00000000441 ENSLOCG00000017306 ENSLOCG00000000492 ##22 ENSLOCG00000017307 ENSLOCG00000000610 ENSLOCG00000000643 ENSLOCG00000017308 Osteoglossocephalai ANCESTRAL SPECIES 977 ENSGT00940000156038.a.a ENSGT00950000183145.B.a.a.b ##22 Osteoglossiformes ANCESTRAL SPECIES 779 ENSGT00940000156038.a.a ENSGT00950000183145.B.a.a.b ##22 Asian bonytongue MODERN SPECIES hgs (ENSSFOG00015023010) ENSSFOG00015027264 ENSSFOG00015023001 GBGT1 (ENSSFOG00015022970) ENSSFOG00015022695 ENSSFOG00015032170 ENSSFOG00015022621 EPN3 (ENSSFOG00015026511) ENSSFOG00015028679 b3gntl1 (ENSSFOG00015022591) metrnla (ENSSFOG00015022583) MPEG1 (ENSSFOG00015022578) ENSSFOG00015022566 ENSSFOG00015001400 ENSSFOG00015001333 ENSSFOG00015001382 ##22 ENSSFOG00015031888 ENSSFOG00015029626 ENSSFOG00015027173 ENSSFOG00015026415 ENSSFOG00015001270 ENSSFOG00015028020 ENSSFOG00015000522 ENSSFOG00015032726 MPEG1 (ENSSFOG00015000423) ENSSFOG00015000390 ENSSFOG00015000356 ENSSFOG00015000265 ENSSFOG00015024788 pdgfaa (ENSSFOG00015000125) mcrip2 (ENSSFOG00015030040) Clupeocephala ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b ##22 Otomorpha ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b ##22 Otophysi ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b ##22 Characiphysae ANCESTRAL SPECIES 105 ENSGT00390000007311 ENSGT00390000010721.b ENSGT00940000166739 ENSGT00390000017606.a.a ENSGT01070000253895 ENSGT01050000244893.c.a.b.g ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000154811.A ENSGT00940000163871.b ENSGT00940000155348.B.c ENSGT00940000160643.i ENSGT00670000098179.e ENSGT00950000183145.B.a.a.b ##22 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 Channel catfish MODERN SPECIES 11 rpl23 (ENSIPUG00000010633) ccdc103 (ENSIPUG00000010622) FAM187A (ENSIPUG00000010618) abi3a (ENSIPUG00000010559) Mpp2 (ENSIPUG00000010516) pyya (ENSIPUG00000010498) hspb9 (ENSIPUG00000010493) ENSIPUG00000010454 ##22 ENSIPUG00000010432 ENSIPUG00000010403 ##22 ENSIPUG00000010383 ##22 ENSIPUG00000010370 ##22 ENSIPUG00000010236 ENSIPUG00000010217 ENSIPUG00000010206 ENSIPUG00000010190 ##22 ENSIPUG00000010176 ##22 ENSIPUG00000010162 ##22 ENSIPUG00000010132 aoc2 (ENSIPUG00000010118) slc25a39 (ENSIPUG00000010088) rpl27 (ENSIPUG00000010054) rundc1 (ENSIPUG00000010030) ENSIPUG00000009927 ifi35 (ENSIPUG00000009902) BCAT1 (ENSIPUG00000009853) hsd17b14 (ENSIPUG00000009835) ENSIPUG00000009830 ENSIPUG00000009812 ENSIPUG00000009806 PPFIA3 (ENSIPUG00000009786) Euteleosteomorpha ANCESTRAL SPECIES 68 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a Acanthomorphata ANCESTRAL SPECIES 338 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b Cod DUPLICATION Cod DUPLICATION Cod MODERN SPECIES 21 ENSGMOG00000018566 ENSGMOG00000018551 ENSGMOG00000034805 ENSGMOG00000018531 ENSGMOG00000031815 ENSGMOG00000027783 ENSGMOG00000026533 ENSGMOG00000018506 ENSGMOG00000012123 ENSGMOG00000012121 ENSGMOG00000022941 ENSGMOG00000023324 ENSGMOG00000035848 ##22 ENSGMOG00000022448 ##22 ENSGMOG00000025397 ##22 ENSGMOG00000024875 ##22 ENSGMOG00000013289 ENSGMOG00000008152 ENSGMOG00000000536 ENSGMOG00000013992 ENSGMOG00000014041 ENSGMOG00000014082 ENSGMOG00000002104 ENSGMOG00000014218 ENSGMOG00000016516 ENSGMOG00000024488 ENSGMOG00000014109 ENSGMOG00000035897 ENSGMOG00000023916 ENSGMOG00000003546 ENSGMOG00000026904 Cod MODERN SPECIES 14 ENSGMOG00000000239 paqr7a (ENSGMOG00000018974) ENSGMOG00000000042 ENSGMOG00000007115 ENSGMOG00000007209 ENSGMOG00000007262 ENSGMOG00000011366 ENSGMOG00000011329 ENSGMOG00000027353 ENSGMOG00000001186 ENSGMOG00000023867 ENSGMOG00000001340 ENSGMOG00000029940 ENSGMOG00000013833 zgc:63863 (ENSGMOG00000009822) ENSGMOG00000036473 ##22 dgat1a (ENSGMOG00000016836) cfap20 (ENSGMOG00000016832) ENSGMOG00000029829 ENSGMOG00000034931 ENSGMOG00000016795 ENSGMOG00000022786 ENSGMOG00000031213 ENSGMOG00000003124 ENSGMOG00000007072 ENSGMOG00000002786 ENSGMOG00000029802 ENSGMOG00000035253 ENSGMOG00000023748 ENSGMOG00000002665 ENSGMOG00000002645 Cod DUPLICATION Cod MODERN SPECIES 21 ENSGMOG00000018593 ENSGMOG00000018566 ENSGMOG00000018551 ENSGMOG00000034805 ENSGMOG00000018531 ENSGMOG00000031815 ENSGMOG00000027783 ENSGMOG00000026533 ENSGMOG00000018506 ENSGMOG00000012123 ENSGMOG00000012121 ENSGMOG00000022941 ENSGMOG00000023324 ENSGMOG00000035848 ##22 ENSGMOG00000022448 ##22 ENSGMOG00000025397 ##22 ENSGMOG00000024875 ##22 ENSGMOG00000013289 ENSGMOG00000008152 ENSGMOG00000000536 ENSGMOG00000013992 ENSGMOG00000014041 ENSGMOG00000014082 ENSGMOG00000002104 ENSGMOG00000014218 ENSGMOG00000016516 ENSGMOG00000024488 ENSGMOG00000014109 ENSGMOG00000035897 ENSGMOG00000023916 ENSGMOG00000003546 Cod MODERN SPECIES 6 ENSGMOG00000018423 pgbd5 (ENSGMOG00000018460) KLF5 (ENSGMOG00000022863) PIBF1 (ENSGMOG00000018472) DIS3 (ENSGMOG00000018499) bora (ENSGMOG00000018544) mzt1 (ENSGMOG00000018573) dachc (ENSGMOG00000018576) ubac2 (ENSGMOG00000018608) ANK3 (ENSGMOG00000018620) CCDC6 (ENSGMOG00000018661) slc16a9a (ENSGMOG00000032652) ENSGMOG00000018693 ENSGMOG00000024160 phyhipla (ENSGMOG00000027963) ENSGMOG00000030842 ##22 BICC1 (ENSGMOG00000018749) ube2d1a (ENSGMOG00000018776) RGS7 (ENSGMOG00000018787) GREM2 (ENSGMOG00000018814) FMN2 (ENSGMOG00000025103) CHRM3 (ENSGMOG00000023917) actn2b (ENSGMOG00000018933) p4ha1b (ENSGMOG00000018948) ecd (ENSGMOG00000018964) fam149b1 (ENSGMOG00000018975) ENSGMOG00000030102 ENSGMOG00000026397 ENSGMOG00000029835 ENSGMOG00000009427 ENSGMOG00000034987 Euacanthomorphacea ANCESTRAL SPECIES 3 ENSGT00530000069282.A ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a Pinecone sodierfish DUPLICATION Pinecone sodierfish DUPLICATION Pinecone sodierfish DUPLICATION Pinecone sodierfish MODERN SPECIES TMC6 (ENSMMDG00005002968) NOTUM (ENSMMDG00005002962) aspscr1 (ENSMMDG00005002941) ENSMMDG00005002928 ENSMMDG00005002703 MAFG (ENSMMDG00005002644) ENSMMDG00005002633 SIRT7 (ENSMMDG00005017443) pcyt2 (ENSMMDG00005017411) gnav1 (ENSMMDG00005017406) npb (ENSMMDG00005017404) sgsh (ENSMMDG00005017401) slc26a11 (ENSMMDG00005017363) ENSMMDG00005017358 ##22 ENSMMDG00005017357 ##22 ENSMMDG00005017356 ##22 ENSMMDG00005017355 ##22 ENSMMDG00005017354 ENSMMDG00005017353 nanos3 (ENSMMDG00005017352) CC2D1A (ENSMMDG00005017343) mri1 (ENSMMDG00005017336) zgc:136864 (ENSMMDG00005017334) ENSMMDG00005017333 ENSMMDG00005017330 khsrp (ENSMMDG00005017285) DCAF15 (ENSMMDG00005017280) RFX1 (ENSMMDG00005016937) rln3b (ENSMMDG00005016933) TNPO2 (ENSMMDG00005016900) NHERF2 (ENSMMDG00005016890) Pinecone sodierfish MODERN SPECIES TMC8 (ENSMMDG00005002983) TMC6 (ENSMMDG00005002968) NOTUM (ENSMMDG00005002962) aspscr1 (ENSMMDG00005002941) ENSMMDG00005002928 ENSMMDG00005002703 MAFG (ENSMMDG00005002644) ENSMMDG00005002633 SIRT7 (ENSMMDG00005017443) pcyt2 (ENSMMDG00005017411) gnav1 (ENSMMDG00005017406) npb (ENSMMDG00005017404) sgsh (ENSMMDG00005017401) slc26a11 (ENSMMDG00005017363) ENSMMDG00005017358 ##22 ENSMMDG00005017357 ##22 ENSMMDG00005017356 ##22 ENSMMDG00005017355 ##22 ENSMMDG00005017354 ENSMMDG00005017353 nanos3 (ENSMMDG00005017352) CC2D1A (ENSMMDG00005017343) mri1 (ENSMMDG00005017336) zgc:136864 (ENSMMDG00005017334) ENSMMDG00005017333 ENSMMDG00005017330 khsrp (ENSMMDG00005017285) DCAF15 (ENSMMDG00005017280) RFX1 (ENSMMDG00005016937) rln3b (ENSMMDG00005016933) TNPO2 (ENSMMDG00005016900) Pinecone sodierfish MODERN SPECIES ENSMMDG00005003001 TMC8 (ENSMMDG00005002983) TMC6 (ENSMMDG00005002968) NOTUM (ENSMMDG00005002962) aspscr1 (ENSMMDG00005002941) ENSMMDG00005002928 ENSMMDG00005002703 MAFG (ENSMMDG00005002644) ENSMMDG00005002633 SIRT7 (ENSMMDG00005017443) pcyt2 (ENSMMDG00005017411) gnav1 (ENSMMDG00005017406) npb (ENSMMDG00005017404) sgsh (ENSMMDG00005017401) slc26a11 (ENSMMDG00005017363) ENSMMDG00005017358 ##22 ENSMMDG00005017357 ##22 ENSMMDG00005017356 ##22 ENSMMDG00005017355 ##22 ENSMMDG00005017354 ENSMMDG00005017353 nanos3 (ENSMMDG00005017352) CC2D1A (ENSMMDG00005017343) mri1 (ENSMMDG00005017336) zgc:136864 (ENSMMDG00005017334) ENSMMDG00005017333 ENSMMDG00005017330 khsrp (ENSMMDG00005017285) DCAF15 (ENSMMDG00005017280) RFX1 (ENSMMDG00005016937) rln3b (ENSMMDG00005016933) Pinecone sodierfish MODERN SPECIES NOTUM (ENSMMDG00005002962) aspscr1 (ENSMMDG00005002941) ENSMMDG00005002928 ENSMMDG00005002703 MAFG (ENSMMDG00005002644) ENSMMDG00005002633 SIRT7 (ENSMMDG00005017443) pcyt2 (ENSMMDG00005017411) gnav1 (ENSMMDG00005017406) npb (ENSMMDG00005017404) sgsh (ENSMMDG00005017401) slc26a11 (ENSMMDG00005017363) ENSMMDG00005017358 ##22 ENSMMDG00005017357 ##22 ENSMMDG00005017356 ##22 ENSMMDG00005017355 ##22 ENSMMDG00005017354 ENSMMDG00005017353 nanos3 (ENSMMDG00005017352) CC2D1A (ENSMMDG00005017343) mri1 (ENSMMDG00005017336) zgc:136864 (ENSMMDG00005017334) ENSMMDG00005017333 ENSMMDG00005017330 khsrp (ENSMMDG00005017285) DCAF15 (ENSMMDG00005017280) RFX1 (ENSMMDG00005016937) rln3b (ENSMMDG00005016933) TNPO2 (ENSMMDG00005016900) NHERF2 (ENSMMDG00005016890) NTHL1 (ENSMMDG00005016888) Percomorphaceae ANCESTRAL SPECIES 7 ENSGT00940000160830 ENSGT00940000153615.a.a.a ENSGT00730000114829 ENSGT00950000182805.a.a.a.a.b ENSGT00940000160409 ENSGT00940000156846 ENSGT00390000012992 ENSGT00950000183133.d ENSGT01030000234629.B ENSGT00940000158954 ENSGT00940000164475 ENSGT00940000165576.a.b ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00390000007688.b ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 ENSGT00940000162108 #25 ENSGT00510000050141.a ENSGT00950000182846.a.a.a.a.b ENSGT00940000160260 ENSGT00390000001958 ENSGT00940000158169.b ENSGT00940000157663 ENSGT00940000154679 ENSGT00950000183011.d.c ENSGT00940000158399 Percomorphaceae_B DUPLICATION Percomorphaceae_B DUPLICATION Percomorphaceae_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.a ##22 Ovalentaria ANCESTRAL SPECIES 102 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 ENSGT00940000156038.a.a.d.a.i.b Ovalentaria_B ANCESTRAL SPECIES 211 ENSGT00950000183145.B.a.a.b.e.a ##22 ENSGT00940000156038.a.a.d.a.i.b Pomacentridae ANCESTRAL SPECIES 20 ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.B.a.a.b.e.a ##22 ENSGT00940000156038.a.a.d.a.i.b ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a.r ENSGT00950000182849.B.c.a.a Bicolor damselfish MODERN SPECIES 425 ENSSPAG00000007473 ENSSPAG00000007743 TMC6 (ENSSPAG00000007771) NOTUM (ENSSPAG00000007812) aspscr1 (ENSSPAG00000007861) ENSSPAG00000007882 ENSSPAG00000007891 MAFG (ENSSPAG00000007915) ENSSPAG00000007929 SIRT7 (ENSSPAG00000007954) pcyt2 (ENSSPAG00000007988) gnav1 (ENSSPAG00000008034) npb (ENSSPAG00000008042) sgsh (ENSSPAG00000008059) slc26a11 (ENSSPAG00000008077) ENSSPAG00000008128 ##22 ENSSPAG00000008135 ENSSPAG00000008149 ENSSPAG00000008164 nanos3 (ENSSPAG00000008183) CC2D1A (ENSSPAG00000008203) mri1 (ENSSPAG00000008235) zgc:136864 (ENSSPAG00000008281) ENSSPAG00000008256 ENSSPAG00000008297 khsrp (ENSSPAG00000008349) DCAF15 (ENSSPAG00000008417) ENSSPAG00000008441 rln3b (ENSSPAG00000008492) TNPO2 (ENSSPAG00000008511) NHERF2 (ENSSPAG00000008551) Cichlidae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.a ##22 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.a ##22 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.a ##22 Haplochromini ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.a ##22 Haplochromini_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.a ##22 Haplochromini_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.a ##22 Eastern happy MODERN SPECIES 15 aimp1b (ENSACLG00000018982) ENSACLG00000019109 ENSACLG00000019154 ENSACLG00000019167 ENSACLG00000019256 ENSACLG00000019353 ENSACLG00000019494 ENSACLG00000019571 ENSACLG00000019699 ENSACLG00000019719 ENSACLG00000019744 ENSACLG00000019756 ENSACLG00000019802 cyp17a2 (ENSACLG00000019809) ENSACLG00000019841 ENSACLG00000019847 ##22 ENSACLG00000019855 ENSACLG00000019899 ENSACLG00000019912 prelid1b (ENSACLG00000019956) ENSACLG00000019982 ENSACLG00000019994 ENSACLG00000020028 ENSACLG00000020124 ENSACLG00000020147 ENSACLG00000020232 ENSACLG00000020246 ENSACLG00000020252 ENSACLG00000020312 ENSACLG00000020318 ENSACLG00000020325 Atherinomorphae ANCESTRAL SPECIES 96 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 Cyprinodontiformes ANCESTRAL SPECIES 106 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 Cyprinodontoidei ANCESTRAL SPECIES 140 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 Poeciliinae ANCESTRAL SPECIES 83 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 Poecilia ANCESTRAL SPECIES 181 ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 Guppy MODERN SPECIES 460 dctn5 (ENSPREG00000019465) ndufab1b (ENSPREG00000019420) TNRC6A (ENSPREG00000019388) ENSPREG00000019372 ENSPREG00000019360 ENSPREG00000019347 PRKCB (ENSPREG00000019286) CLEC16A (ENSPREG00000019220) dexi (ENSPREG00000019195) ENSPREG00000019107 nubp1 (ENSPREG00000019077) emp2 (ENSPREG00000019065) ENSPREG00000019049 ENSPREG00000019029 ##22 ENSPREG00000018958 ENSPREG00000018934 ##22 ENSPREG00000018930 ENSPREG00000018912 ENSPREG00000018904 ENSPREG00000018893 GRIN2A (ENSPREG00000018839) ENSPREG00000018806 adsl (ENSPREG00000018777) ENSPREG00000018760 atf4b (ENSPREG00000018746) ENSPREG00000018711 mief1 (ENSPREG00000018688) ENSPREG00000018679 ENSPREG00000018669 mpst (ENSPREG00000018653) mpst (ENSPREG00000018638) Percomorphaceae_C ANCESTRAL SPECIES 4 ENSGT01090000260139 ENSGT00940000155360.A ENSGT00940000157635 ENSGT00390000010057 ENSGT00940000160830 ENSGT00940000153615.a.a.a ENSGT00730000114829 ENSGT00950000182805.a.a.a.a.b ENSGT00940000160409 ENSGT00940000156846 ENSGT00390000012992 ENSGT00950000183133.d ENSGT01030000234629.B ENSGT00940000158954 ENSGT00940000164475 ENSGT00950000183145.B.a.a.b.e.a ##22 ENSGT00940000156038.a.a.d.a ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00940000162108 #25 ENSGT00510000050141.a ENSGT00950000182846.a.a.a.a.b ENSGT00940000160260 ENSGT00390000001958 ENSGT00940000158169.b ENSGT00940000157663 ENSGT00950000183011.d.c ENSGT00940000158399 ENSGT00940000153567.b.b ENSGT00950000182998.C.a.k ENSGT00950000183146.a.b.b ENSGT01030000239794 Eupercaria ANCESTRAL SPECIES 4 ENSGT00940000163056 ENSGT01090000260139 ENSGT00940000155360.A ENSGT00940000157635 ENSGT00390000010057 ENSGT00940000160830 ENSGT00940000153615.a.a.a ENSGT00950000182805.a.a.a.a.b ENSGT00940000160409 ENSGT00940000156846 ENSGT00390000012992 ENSGT00950000183133.d ENSGT01030000234629.B ENSGT00940000158954 ENSGT00940000164475 ENSGT00950000183145.B.a.a.b.e.a ##22 ENSGT00940000156038.a.a.d.a ENSGT00940000162108 #25 ENSGT00510000050141.a ENSGT00950000182846.a.a.a.a.b ENSGT00940000160260 ENSGT00390000001958 ENSGT00940000158169.b ENSGT00940000157663 ENSGT00940000154679 ENSGT00950000183011.d.c ENSGT00940000158399 ENSGT00940000153567.b.b ENSGT00950000182998.C.a.k ENSGT00950000183146.a.b.b ENSGT01030000239794 Eupecaria_A ANCESTRAL SPECIES 4 ENSGT00940000163056 ENSGT01090000260139 ENSGT00940000155360.A ENSGT00940000157635 ENSGT00390000010057 ENSGT00940000160830 ENSGT00940000153615.a.a.a ENSGT00950000182805.a.a.a.a.b ENSGT00940000160409 ENSGT00940000156846 ENSGT00390000012992 ENSGT00950000183133.d ENSGT01030000234629.B ENSGT00940000158954 ENSGT00940000164475 ENSGT00950000183145.B.a.a.b.e.a ##22 ENSGT00940000156038.a.a.d.a ENSGT00940000162108 #25 ENSGT00510000050141.a ENSGT00950000182846.a.a.a.a.b ENSGT00940000160260 ENSGT00390000001958 ENSGT00940000158169.b ENSGT00940000157663 ENSGT00950000183011.d.c ENSGT00940000158399 ENSGT00940000153567.b.b ENSGT00950000182998.C.a.k ENSGT00950000183146.a.b.b ENSGT01030000239794 ENSGT00940000159736.a Eupecaria_B ANCESTRAL SPECIES 1 ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 ENSGT00940000156038.a.a.d.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b Eupecaria_C ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.a ##22 Eupercaria_incertae_sedis ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.a ##22 Large yellow croaker MODERN SPECIES 481 ENSLCRG00005002396 MAFG (ENSLCRG00005022217) ENSLCRG00005022216 ENSLCRG00005022214 SIRT7 (ENSLCRG00005022213) pcyt2 (ENSLCRG00005022100) ENSLCRG00005022079 gnav1 (ENSLCRG00005022072) npb (ENSLCRG00005022067) sgsh (ENSLCRG00005022055) slc26a11 (ENSLCRG00005022046) ENSLCRG00005022043 ##22 ENSLCRG00005022040 ENSLCRG00005022036 ENSLCRG00005022034 ENSLCRG00005022025 ##22 ENSLCRG00005019000 MICU3 (ENSLCRG00005018912) FGF20 (ENSLCRG00005018910) kpna7 (ENSLCRG00005018836) ENSLCRG00005018825 xpa (ENSLCRG00005018816) slc24a2 (ENSLCRG00005018812) nansa (ENSLCRG00005018811) clta (ENSLCRG00005018803) gne (ENSLCRG00005018346) cplx2l (ENSLCRG00005018330) TMOD1 (ENSLCRG00005018317) tdrd7a (ENSLCRG00005018302) stra6l (ENSLCRG00005018293) stra6l (ENSLCRG00005018286) Perciformes ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.a ##22 Cottioidei ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.a ##22 Stickleback MODERN SPECIES 4 ENSGACG00000019059 TMC8 (ENSGACG00000019054) TMC6 (ENSGACG00000019048) NOTUM (ENSGACG00000019047) aspscr1 (ENSGACG00000019046) ENSGACG00000019045 ENSGACG00000019043 mafgb (ENSGACG00000019041) ENSGACG00000019039 SIRT7 (ENSGACG00000019035) pcyt2 (ENSGACG00000019032) gnav1 (ENSGACG00000019015) npb (ENSGACG00000019013) sgsh (ENSGACG00000019010) slc26a11 (ENSGACG00000019006) ENSGACG00000019004 ##22 nanos3 (ENSGACG00000019003) ENSGACG00000019002 CC2D1A (ENSGACG00000018999) mri1 (ENSGACG00000018995) zgc:136864 (ENSGACG00000018994) ENSGACG00000018993 ENSGACG00000018992 khsrp (ENSGACG00000018990) ENSGACG00000018989 RFX1 (ENSGACG00000018987) rln3b (ENSGACG00000018985) TNPO2 (ENSGACG00000018968) ENSGACG00000018966 NTHL1 (ENSGACG00000018961) TSC2 (ENSGACG00000018952) Percomorphaceae_D ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.a ##22 Carangaria ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.a ##22 Carangaria_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.a ##22 Barramundi perch DUPLICATION Barramundi perch MODERN SPECIES 1645 slc26a11 (ENSLCAG00010016782) ENSLCAG00010016825 ##22 ENSLCAG00010016830 ##22 ENSLCAG00010016832 ENSLCAG00010016836 nanos3 (ENSLCAG00010016841) Barramundi perch MODERN SPECIES 1645 slc26a11 (ENSLCAG00010016782) ENSLCAG00010016825 ##22 ENSLCAG00010016830 ##22 ENSLCAG00010016832 ENSLCAG00010016836 nanos3 (ENSLCAG00010016841) Percomorphaceae_B ANCESTRAL SPECIES ENSGT00530000069282.A ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00510000047513 Ovalentaria ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.b ##22 Ovalentaria_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.b ##22 Cichlidae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.b ##22 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.b ##22 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.b ##22 Haplochromini ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.b ##22 Haplochromini_A ANCESTRAL SPECIES 2 ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a Haplochromini_B ANCESTRAL SPECIES 23 ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.a ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b Eastern happy MODERN SPECIES 18 TMC8 (ENSACLG00000019683) TMC6 (ENSACLG00000019720) NOTUM (ENSACLG00000019776) aspscr1 (ENSACLG00000019805) ENSACLG00000019944 ENSACLG00000019960 ENSACLG00000019971 MAFG (ENSACLG00000019998) ENSACLG00000020013 SIRT7 (ENSACLG00000020038) pcyt2 (ENSACLG00000020079) gnav1 (ENSACLG00000020120) npb (ENSACLG00000020145) sgsh (ENSACLG00000020155) slc26a11 (ENSACLG00000020208) ENSACLG00000020227 ##22 ENSACLG00000020319 nanos3 (ENSACLG00000020332) ENSACLG00000020352 mri1 (ENSACLG00000020412) zgc:136864 (ENSACLG00000020422) ENSACLG00000020439 ENSACLG00000020456 khsrp (ENSACLG00000020487) DCAF15 (ENSACLG00000020575) RFX1 (ENSACLG00000020623) rln3b (ENSACLG00000020651) TNPO2 (ENSACLG00000020672) NHERF2 (ENSACLG00000020749) NTHL1 (ENSACLG00000020790) TSC2 (ENSACLG00000020810) Percomorphaceae_C ANCESTRAL SPECIES 4 ENSGT00940000157635 ENSGT00390000010057 ENSGT00940000160830 ENSGT00940000153615.a.a.a ENSGT00730000114829 ENSGT00950000182805.a.a.a.a.b ENSGT00940000160409 ENSGT00940000156846 ENSGT00390000012992 ENSGT00950000183133.d ENSGT01030000234629.B ENSGT00940000158954 ENSGT00940000164475 ENSGT00950000183145.B.a.a.b.e.a ##22 ENSGT00940000156038.a.a.d.a ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00940000162108 #25 ENSGT00510000050141.a ENSGT00950000182846.a.a.a.a.b ENSGT00940000160260 ENSGT00390000001958 ENSGT00940000158169.b ENSGT00940000157663 ENSGT00950000183011.d.c ENSGT00940000158399 ENSGT00940000153567.b.b ENSGT00950000182998.C.a.k ENSGT00950000183146.a.b.b ENSGT01030000239794 ENSGT00940000159736.a ENSGT01030000234637.a.a.a.a Eupercaria ANCESTRAL SPECIES 2 ENSGT00530000069282.A ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00950000182849.B.d Eupecaria_A ANCESTRAL SPECIES 3 ENSGT00530000069282.A ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00950000182849.B.d Ballan wrasse MODERN SPECIES 1358 ENSLBEG00000028264 ENSLBEG00000028270 ##22 ENSLBEG00000028274 Eupecaria_B ANCESTRAL SPECIES 1 ENSGT00530000069282.A ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 ENSGT00940000156038.a.a.d.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f Eupecaria_C ANCESTRAL SPECIES 22 ENSGT00530000069282.A ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a Eupercaria_incertae_sedis ANCESTRAL SPECIES 21 ENSGT00530000069282.B ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a Large yellow croaker MODERN SPECIES 481 TMC6 (ENSLCRG00005003214) NOTUM (ENSLCRG00005002461) aspscr1 (ENSLCRG00005002423) ENSLCRG00005002411 ENSLCRG00005002396 MAFG (ENSLCRG00005022217) ENSLCRG00005022216 ENSLCRG00005022214 SIRT7 (ENSLCRG00005022213) pcyt2 (ENSLCRG00005022100) ENSLCRG00005022079 gnav1 (ENSLCRG00005022072) npb (ENSLCRG00005022067) sgsh (ENSLCRG00005022055) slc26a11 (ENSLCRG00005022046) ENSLCRG00005022043 ##22 ENSLCRG00005022040 ENSLCRG00005022036 ENSLCRG00005022034 ENSLCRG00005022025 ##22 ENSLCRG00005019000 MICU3 (ENSLCRG00005018912) FGF20 (ENSLCRG00005018910) kpna7 (ENSLCRG00005018836) ENSLCRG00005018825 xpa (ENSLCRG00005018816) slc24a2 (ENSLCRG00005018812) nansa (ENSLCRG00005018811) clta (ENSLCRG00005018803) gne (ENSLCRG00005018346) cplx2l (ENSLCRG00005018330) Perciformes ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.b ##22 Cottioidei ANCESTRAL SPECIES 3 ENSGT00530000069282.B ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT01100000263525.a.b.a.a ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00510000047513 ENSGT00950000183139.C Lumpfish MODERN SPECIES tk1 (ENSCLMG00005014937) ENSCLMG00005014935 ENSCLMG00005014933 NOTUM (ENSCLMG00005014926) aspscr1 (ENSCLMG00005014918) ENSCLMG00005014916 ENSCLMG00005014849 MAFG (ENSCLMG00005014845) ENSCLMG00005014844 SIRT7 (ENSCLMG00005014808) pcyt2 (ENSCLMG00005014576) gnav1 (ENSCLMG00005014568) npb (ENSCLMG00005014567) sgsh (ENSCLMG00005014565) slc26a11 (ENSCLMG00005014361) ENSCLMG00005014360 ##22 ENSCLMG00005014359 CC2D1A (ENSCLMG00005014346) mri1 (ENSCLMG00005014341) zgc:136864 (ENSCLMG00005014340) ENSCLMG00005014339 ENSCLMG00005013535 khsrp (ENSCLMG00005013530) DCAF15 (ENSCLMG00005013512) RFX1 (ENSCLMG00005013511) rln3b (ENSCLMG00005013510) TNPO2 (ENSCLMG00005013504) ENSCLMG00005013490 NTHL1 (ENSCLMG00005013479) TSC2 (ENSCLMG00005009758) ENSCLMG00005009707 Percomorphaceae_D ANCESTRAL SPECIES ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00950000182849.B.d Carangaria ANCESTRAL SPECIES ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00390000007091 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00950000182849.B.d Carangaria_A ANCESTRAL SPECIES 24 ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00950000182849.B.d Seriola ANCESTRAL SPECIES 11 ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT01100000263525.a.b.a.a ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00950000182849.B.d ENSGT00510000047513 Greater amberjack MODERN SPECIES 84 TMC8 (ENSSDUG00000001533) TMC6 (ENSSDUG00000001594) NOTUM (ENSSDUG00000001646) aspscr1 (ENSSDUG00000001678) ENSSDUG00000001716 ENSSDUG00000001749 MAFG (ENSSDUG00000001779) SIRT7 (ENSSDUG00000001789) pcyt2 (ENSSDUG00000001820) gnav1 (ENSSDUG00000001865) npb (ENSSDUG00000001901) sgsh (ENSSDUG00000001936) slc26a11 (ENSSDUG00000001983) ENSSDUG00000002038 ##22 ENSSDUG00000002044 ENSSDUG00000002055 ##22 ENSSDUG00000002066 ##22 ENSSDUG00000002094 nanos3 (ENSSDUG00000002131) CC2D1A (ENSSDUG00000002160) mri1 (ENSSDUG00000002275) zgc:136864 (ENSSDUG00000002291) ENSSDUG00000002326 ENSSDUG00000002348 khsrp (ENSSDUG00000002390) DCAF15 (ENSSDUG00000002448) RFX1 (ENSSDUG00000002511) rln3b (ENSSDUG00000002552) TNPO2 (ENSSDUG00000002607) NHERF2 (ENSSDUG00000002671) ENSSDUG00000002684 Yellowtail amberjack MODERN SPECIES 3041 TMC6 (ENSSLDG00000012223) NOTUM (ENSSLDG00000012241) aspscr1 (ENSSLDG00000012283) ENSSLDG00000012314 ENSSLDG00000012331 MAFG (ENSSLDG00000012357) ENSSLDG00000012375 SIRT7 (ENSSLDG00000012403) pcyt2 (ENSSLDG00000012438) gnav1 (ENSSLDG00000012475) npb (ENSSLDG00000012517) sgsh (ENSSLDG00000012536) slc26a11 (ENSSLDG00000012566) ENSSLDG00000012608 ##22 ENSSLDG00000012617 ENSSLDG00000012628 ##22 ENSSLDG00000012639 nanos3 (ENSSLDG00000012674) CC2D1A (ENSSLDG00000012710) mri1 (ENSSLDG00000012900) zgc:136864 (ENSSLDG00000012924) ENSSLDG00000012935 ENSSLDG00000012965 khsrp (ENSSLDG00000012993) DCAF15 (ENSSLDG00000013026) RFX1 (ENSSLDG00000013063) rln3b (ENSSLDG00000013091) TNPO2 (ENSSLDG00000013107) NHERF2 (ENSSLDG00000013152) NTHL1 (ENSSLDG00000013160) TSC2 (ENSSLDG00000013236) Barramundi perch DUPLICATION Barramundi perch MODERN SPECIES 123 NOTUM (ENSLCAG00010005289) aspscr1 (ENSLCAG00010005295) CACNA1H (ENSLCAG00010005311) ENSLCAG00010005338 ENSLCAG00010005350 MAFG (ENSLCAG00010005385) ENSLCAG00010005390 SIRT7 (ENSLCAG00010005400) pcyt2 (ENSLCAG00010005411) gnav1 (ENSLCAG00010005435) npb (ENSLCAG00010005437) sgsh (ENSLCAG00010005440) slc26a11 (ENSLCAG00010005458) ENSLCAG00010005489 ##22 ENSLCAG00010005494 ENSLCAG00010005497 ##22 ENSLCAG00010005499 ENSLCAG00010005503 nanos3 (ENSLCAG00010005507) CC2D1A (ENSLCAG00010005511) mri1 (ENSLCAG00010005517) zgc:136864 (ENSLCAG00010005524) ENSLCAG00010005525 ENSLCAG00010005528 khsrp (ENSLCAG00010005531) DCAF15 (ENSLCAG00010005539) RFX1 (ENSLCAG00010005546) rln3b (ENSLCAG00010005555) TNPO2 (ENSLCAG00010005579) ENSLCAG00010005697 ENSLCAG00010005699 Barramundi perch MODERN SPECIES 123 ENSLCAG00010005188 TMC6 (ENSLCAG00010005217) NOTUM (ENSLCAG00010005289) aspscr1 (ENSLCAG00010005295) CACNA1H (ENSLCAG00010005311) ENSLCAG00010005338 ENSLCAG00010005350 MAFG (ENSLCAG00010005385) ENSLCAG00010005390 SIRT7 (ENSLCAG00010005400) pcyt2 (ENSLCAG00010005411) gnav1 (ENSLCAG00010005435) npb (ENSLCAG00010005437) sgsh (ENSLCAG00010005440) slc26a11 (ENSLCAG00010005458) ENSLCAG00010005489 ##22 ENSLCAG00010005494 ENSLCAG00010005497 ##22 ENSLCAG00010005499 ENSLCAG00010005503 nanos3 (ENSLCAG00010005507) CC2D1A (ENSLCAG00010005511) mri1 (ENSLCAG00010005517) zgc:136864 (ENSLCAG00010005524) ENSLCAG00010005525 ENSLCAG00010005528 khsrp (ENSLCAG00010005531) DCAF15 (ENSLCAG00010005539) RFX1 (ENSLCAG00010005546) rln3b (ENSLCAG00010005555) TNPO2 (ENSLCAG00010005579) Anabantaria ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.e.b ##22 Zig-zag eel MODERN SPECIES TMC6 (ENSMAMG00000011348) ENSMAMG00000011354 aspscr1 (ENSMAMG00000011385) MYADML2 (ENSMAMG00000026044) ENSMAMG00000011403 MAFG (ENSMAMG00000011427) ENSMAMG00000011439 SIRT7 (ENSMAMG00000011451) pcyt2 (ENSMAMG00000011472) gnav1 (ENSMAMG00000011521) npb (ENSMAMG00000011561) sgsh (ENSMAMG00000011541) slc26a11 (ENSMAMG00000011585) ENSMAMG00000028201 ENSMAMG00000028311 ENSMAMG00000011614 ##22 ENSMAMG00000011634 ENSMAMG00000026081 ENSMAMG00000011670 ENSMAMG00000011686 ENSMAMG00000011710 ENSMAMG00000011719 ENSMAMG00000011734 ENSMAMG00000011746 DCAF15 (ENSMAMG00000011813) ENSMAMG00000011826 rln3b (ENSMAMG00000011852) ENSMAMG00000011862 ENSMAMG00000011928 NTHL1 (ENSMAMG00000011946) ENSMAMG00000011960 Percomorphaceae_B ANCESTRAL SPECIES 6 ENSGT00390000010057 ENSGT00940000160830 ENSGT00940000153615.a.a.a ENSGT00730000114829 ENSGT00950000182805.a.a.a.a.b ENSGT00940000160409 ENSGT00940000156846 ENSGT00390000012992 ENSGT00950000183133.d ENSGT01030000234629.B ENSGT00940000158954 ENSGT00940000164475 ENSGT00940000163299.B.b.b.g.b ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 ENSGT00940000162108 #25 ENSGT00510000050141.a ENSGT00950000182846.a.a.a.a.b ENSGT00940000160260 ENSGT00390000001958 ENSGT00940000158169.b ENSGT00940000157663 ENSGT00940000154679 ENSGT00950000183011.d.c ENSGT00940000158399 ENSGT00940000153567.b.b ENSGT00950000182998.C.a.k Ovalentaria ANCESTRAL SPECIES ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a.i.a ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a.j ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a Ovalentaria_B ANCESTRAL SPECIES 4 ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a.i.a ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a.j ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a Pomacentridae ANCESTRAL SPECIES 20 ENSGT00950000182935.B.a.c ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.B.a.a.b.e.a ##22 ENSGT00940000156038.a.a.d.a.i.b ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b Pomacentridae_A DUPLICATION Pomacentridae_A DUPLICATION Pomacentridae_A ANCESTRAL SPECIES 13 ENSGT00950000182935.B.a.c ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.f.a.a ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a.r ENSGT00950000182849.B.c.a.a ENSGT00510000047513 Amphiprion ANCESTRAL SPECIES ENSGT00950000182935.B.a.c ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.f.a.a ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a.r ENSGT00950000182849.B.c.a.a ENSGT00510000047513 Orange clownfish DUPLICATION Orange clownfish MODERN SPECIES 17 TMC8 (ENSAPEG00000014347) TMC6 (ENSAPEG00000014297) NOTUM (ENSAPEG00000014253) aspscr1 (ENSAPEG00000014220) ENSAPEG00000014198 ENSAPEG00000014189 ENSAPEG00000014166 MAFG (ENSAPEG00000014143) ENSAPEG00000014129 SIRT7 (ENSAPEG00000014084) pcyt2 (ENSAPEG00000014036) gnav1 (ENSAPEG00000013991) npb (ENSAPEG00000013970) sgsh (ENSAPEG00000013894) slc26a11 (ENSAPEG00000013801) ENSAPEG00000013787 ##22 ENSAPEG00000013771 ##22 ENSAPEG00000013757 ENSAPEG00000013741 nanos3 (ENSAPEG00000013733) CC2D1A (ENSAPEG00000013670) ENSAPEG00000013610 ENSAPEG00000013584 mri1 (ENSAPEG00000013553) zgc:136864 (ENSAPEG00000013516) ENSAPEG00000013491 ENSAPEG00000013438 khsrp (ENSAPEG00000013411) DCAF15 (ENSAPEG00000013391) RFX1 (ENSAPEG00000013349) rln3b (ENSAPEG00000013377) Orange clownfish MODERN SPECIES 17 TMC6 (ENSAPEG00000014297) NOTUM (ENSAPEG00000014253) aspscr1 (ENSAPEG00000014220) ENSAPEG00000014198 ENSAPEG00000014189 ENSAPEG00000014166 MAFG (ENSAPEG00000014143) ENSAPEG00000014129 SIRT7 (ENSAPEG00000014084) pcyt2 (ENSAPEG00000014036) gnav1 (ENSAPEG00000013991) npb (ENSAPEG00000013970) sgsh (ENSAPEG00000013894) slc26a11 (ENSAPEG00000013801) ENSAPEG00000013787 ##22 ENSAPEG00000013771 ##22 ENSAPEG00000013757 ENSAPEG00000013741 nanos3 (ENSAPEG00000013733) CC2D1A (ENSAPEG00000013670) ENSAPEG00000013610 ENSAPEG00000013584 mri1 (ENSAPEG00000013553) zgc:136864 (ENSAPEG00000013516) ENSAPEG00000013491 ENSAPEG00000013438 khsrp (ENSAPEG00000013411) DCAF15 (ENSAPEG00000013391) RFX1 (ENSAPEG00000013349) rln3b (ENSAPEG00000013377) TNPO2 (ENSAPEG00000013268) Clown anemonefish MODERN SPECIES 1275 npb (ENSAOCG00000009645) sgsh (ENSAOCG00000002701) slc26a11 (ENSAOCG00000009713) ENSAOCG00000009730 ENSAOCG00000009767 ##22 ENSAOCG00000009779 ENSAOCG00000009794 ##22 ENSAOCG00000009806 ##22 ENSAOCG00000009827 ##22 ENSAOCG00000009839 ENSAOCG00000009862 nanos3 (ENSAOCG00000009870) CC2D1A (ENSAOCG00000009895) mri1 (ENSAOCG00000009931) zgc:136864 (ENSAOCG00000009948) ENSAOCG00000009971 ENSAOCG00000010018 khsrp (ENSAOCG00000010049) DCAF15 (ENSAOCG00000010062) RFX1 (ENSAOCG00000010080) rln3b (ENSAOCG00000002481) TNPO2 (ENSAOCG00000010152) NHERF2 (ENSAOCG00000010288) NTHL1 (ENSAOCG00000010339) Spiny chromis MODERN SPECIES 26 syngr2b (ENSAPOG00000010381) TMC8 (ENSAPOG00000010370) TMC6 (ENSAPOG00000010264) NOTUM (ENSAPOG00000010235) aspscr1 (ENSAPOG00000010186) ENSAPOG00000010174 ENSAPOG00000010152 MAFG (ENSAPOG00000010112) ENSAPOG00000010085 SIRT7 (ENSAPOG00000010057) pcyt2 (ENSAPOG00000010006) gnav1 (ENSAPOG00000009945) npb (ENSAPOG00000009877) sgsh (ENSAPOG00000009865) slc26a11 (ENSAPOG00000000758) ENSAPOG00000009799 ##22 ENSAPOG00000009794 ENSAPOG00000009778 nanos3 (ENSAPOG00000009762) CC2D1A (ENSAPOG00000009737) mri1 (ENSAPOG00000009673) zgc:136864 (ENSAPOG00000009647) ENSAPOG00000009638 ENSAPOG00000009597 khsrp (ENSAPOG00000009524) DCAF15 (ENSAPOG00000009405) RFX1 (ENSAPOG00000009380) rln3b (ENSAPOG00000009352) TNPO2 (ENSAPOG00000009339) ENSAPOG00000009241 NTHL1 (ENSAPOG00000009229) Pomacentridae_A ANCESTRAL SPECIES 317 ENSGT00950000183145.B.a.a.b.f.b ##22 ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.B.a.a.b.f.a.b ##22 Amphiprion ANCESTRAL SPECIES 343 ENSGT00950000183145.B.a.a.b.f.b ##22 ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.B.a.a.b.f.a.b ##22 Clown anemonefish MODERN SPECIES 1275 npb (ENSAOCG00000009645) sgsh (ENSAOCG00000002701) slc26a11 (ENSAOCG00000009713) ENSAOCG00000009730 ENSAOCG00000009767 ##22 ENSAOCG00000009779 ENSAOCG00000009794 ##22 ENSAOCG00000009806 ##22 ENSAOCG00000009827 ##22 ENSAOCG00000009839 ENSAOCG00000009862 nanos3 (ENSAOCG00000009870) CC2D1A (ENSAOCG00000009895) mri1 (ENSAOCG00000009931) zgc:136864 (ENSAOCG00000009948) ENSAOCG00000009971 ENSAOCG00000010018 khsrp (ENSAOCG00000010049) DCAF15 (ENSAOCG00000010062) RFX1 (ENSAOCG00000010080) rln3b (ENSAOCG00000002481) TNPO2 (ENSAOCG00000010152) Pomacentridae_A ANCESTRAL SPECIES 317 ENSGT00950000183145.B.a.a.b.f.b ##22 ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.B.a.a.b.f.a.b ##22 Amphiprion ANCESTRAL SPECIES 343 ENSGT00950000183145.B.a.a.b.f.b ##22 ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.B.a.a.b.f.a.b ##22 Clown anemonefish DUPLICATION Clown anemonefish MODERN SPECIES 1275 npb (ENSAOCG00000009645) sgsh (ENSAOCG00000002701) slc26a11 (ENSAOCG00000009713) ENSAOCG00000009730 ENSAOCG00000009767 ##22 ENSAOCG00000009779 ENSAOCG00000009794 ##22 ENSAOCG00000009806 ##22 ENSAOCG00000009827 ##22 ENSAOCG00000009839 ENSAOCG00000009862 nanos3 (ENSAOCG00000009870) CC2D1A (ENSAOCG00000009895) mri1 (ENSAOCG00000009931) zgc:136864 (ENSAOCG00000009948) ENSAOCG00000009971 ENSAOCG00000010018 khsrp (ENSAOCG00000010049) DCAF15 (ENSAOCG00000010062) RFX1 (ENSAOCG00000010080) Clown anemonefish MODERN SPECIES 1275 npb (ENSAOCG00000009645) sgsh (ENSAOCG00000002701) slc26a11 (ENSAOCG00000009713) ENSAOCG00000009730 ENSAOCG00000009767 ##22 ENSAOCG00000009779 ENSAOCG00000009794 ##22 ENSAOCG00000009806 ##22 ENSAOCG00000009827 ##22 ENSAOCG00000009839 ENSAOCG00000009862 nanos3 (ENSAOCG00000009870) CC2D1A (ENSAOCG00000009895) mri1 (ENSAOCG00000009931) zgc:136864 (ENSAOCG00000009948) ENSAOCG00000009971 ENSAOCG00000010018 khsrp (ENSAOCG00000010049) DCAF15 (ENSAOCG00000010062) RFX1 (ENSAOCG00000010080) rln3b (ENSAOCG00000002481) TNPO2 (ENSAOCG00000010152) NHERF2 (ENSAOCG00000010288) Cichlidae ANCESTRAL SPECIES 3 ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00510000047513 Midas cichlid DUPLICATION Midas cichlid MODERN SPECIES 808 ENSACIG00000016023 ENSACIG00000016182 nmnat2 (ENSACIG00000016329) ENSACIG00000016361 dhx9 (ENSACIG00000016431) ENSACIG00000016519 ##22 ENSACIG00000016795 ENSACIG00000016877 rps12 (ENSACIG00000016913) eya4 (ENSACIG00000016949) tcf21 (ENSACIG00000016997) tbpl1 (ENSACIG00000017023) slc2a12 (ENSACIG00000017034) SGK1 (ENSACIG00000017047) aldh8a1 (ENSACIG00000017065) hbs1l (ENSACIG00000017087) ENSACIG00000017111 myb (ENSACIG00000017117) PDE7B (ENSACIG00000017160) mtfr2 (ENSACIG00000017191) armc1l (ENSACIG00000017255) Midas cichlid MODERN SPECIES 1113 TMC8 (ENSACIG00000008565) TMC6 (ENSACIG00000008608) NOTUM (ENSACIG00000008639) aspscr1 (ENSACIG00000008662) ENSACIG00000008695 ENSACIG00000008706 ENSACIG00000008721 MAFG (ENSACIG00000008743) SIRT7 (ENSACIG00000008760) pcyt2 (ENSACIG00000008829) gnav1 (ENSACIG00000008859) npb (ENSACIG00000008888) sgsh (ENSACIG00000008934) slc26a11 (ENSACIG00000008967) ENSACIG00000009044 ENSACIG00000009065 ##22 ENSACIG00000009077 ENSACIG00000009089 nanos3 (ENSACIG00000009111) ENSACIG00000009129 mri1 (ENSACIG00000009199) zgc:136864 (ENSACIG00000009222) ENSACIG00000009257 ENSACIG00000009273 khsrp (ENSACIG00000009298) DCAF15 (ENSACIG00000009425) RFX1 (ENSACIG00000009456) rln3b (ENSACIG00000009521) TNPO2 (ENSACIG00000009586) ENSACIG00000009640 NTHL1 (ENSACIG00000009673) Pseudocrenilabrinae DUPLICATION Pseudocrenilabrinae DUPLICATION Pseudocrenilabrinae DUPLICATION Pseudocrenilabrinae ANCESTRAL SPECIES 3 ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.a ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00510000047513 Nile tilapia MODERN SPECIES 12 SRPK3 (ENSONIG00000000769) tsr2 (ENSONIG00000000763) grm6a (ENSONIG00000000755) abt1 (ENSONIG00000000750) rad51c (ENSONIG00000042488) CDK16 (ENSONIG00000000736) CCM2L (ENSONIG00000000732) ENSONIG00000000730 ENSONIG00000033261 ENSONIG00000039995 ENSONIG00000041257 ENSONIG00000040125 ENSONIG00000030712 ##22 ENSONIG00000014581 ENSONIG00000004087 ENSONIG00000033251 ##22 ENSONIG00000034031 ##22 ENSONIG00000031199 ##22 ENSONIG00000027297 ##22 ENSONIG00000040127 ENSONIG00000016583 ENSONIG00000039737 ENSONIG00000038119 hsd17b10 (ENSONIG00000027180) FAM120C (ENSONIG00000016575) IDH3G (ENSONIG00000016573) AVPR2 (ENSONIG00000016572) slc16a1b (ENSONIG00000016569) lima1a (ENSONIG00000016565) spryd3 (ENSONIG00000016562) igfbp6b (ENSONIG00000016561) Pseudocrenilabrinae_A ANCESTRAL SPECIES 5 ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.a ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00510000047513 Haplochromini ANCESTRAL SPECIES 3 ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.a ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00510000047513 Haplochromini_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.f.e.a.a ##22 Haplochromini_B ANCESTRAL SPECIES 23 ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.a ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00510000047513 Zebra mbuna MODERN SPECIES 1109 aspscr1 (ENSMZEG00005007985) ENSMZEG00005007980 ENSMZEG00005007974 ENSMZEG00005007964 MAFG (ENSMZEG00005007955) ENSMZEG00005007948 SIRT7 (ENSMZEG00005007936) pcyt2 (ENSMZEG00005007912) gnav1 (ENSMZEG00005007895) npb (ENSMZEG00005007885) sgsh (ENSMZEG00005007867) slc26a11 (ENSMZEG00005007858) ENSMZEG00005007843 ENSMZEG00005007755 ##22 ENSMZEG00005007722 ##22 ENSMZEG00005007712 ##22 ENSMZEG00005007707 ENSMZEG00005007701 nanos3 (ENSMZEG00005007690) CC2D1A (ENSMZEG00005007673) mri1 (ENSMZEG00005007657) zgc:136864 (ENSMZEG00005007631) ENSMZEG00005007622 ENSMZEG00005007598 DCAF15 (ENSMZEG00005007530) RFX1 (ENSMZEG00005007468) rln3b (ENSMZEG00005007510) TNPO2 (ENSMZEG00005007408) NHERF2 (ENSMZEG00005007390) NTHL1 (ENSMZEG00005007375) TSC2 (ENSMZEG00005007304) Pseudocrenilabrinae ANCESTRAL SPECIES 3 ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.a ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a Pseudocrenilabrinae_A ANCESTRAL SPECIES 5 ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.a ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a Haplochromini ANCESTRAL SPECIES 3 ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.a ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a Burton s mouthbrooder MODERN SPECIES 337 TMC6 (ENSHBUG00000019143) NOTUM (ENSHBUG00000019119) aspscr1 (ENSHBUG00000019095) ENSHBUG00000019081 ENSHBUG00000019074 ENSHBUG00000019060 MAFG (ENSHBUG00000019029) ENSHBUG00000019026 SIRT7 (ENSHBUG00000019019) pcyt2 (ENSHBUG00000018986) gnav1 (ENSHBUG00000018929) npb (ENSHBUG00000018889) sgsh (ENSHBUG00000018877) slc26a11 (ENSHBUG00000018824) ENSHBUG00000018807 ENSHBUG00000018798 ##22 ENSHBUG00000018759 ENSHBUG00000018742 nanos3 (ENSHBUG00000018730) ENSHBUG00000018697 mri1 (ENSHBUG00000018620) zgc:136864 (ENSHBUG00000018596) ENSHBUG00000000556 ENSHBUG00000018567 khsrp (ENSHBUG00000018543) DCAF15 (ENSHBUG00000001095) RFX1 (ENSHBUG00000001083) rln3b (ENSHBUG00000018339) TNPO2 (ENSHBUG00000018317) NHERF2 (ENSHBUG00000018254) NTHL1 (ENSHBUG00000018223) Haplochromini_A ANCESTRAL SPECIES 2 ENSGT00390000015892.a ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00510000047513 P. nyererei MODERN SPECIES 360 TMC6 (ENSPNYG00000002422) NOTUM (ENSPNYG00000002336) aspscr1 (ENSPNYG00000002321) ENSPNYG00000002307 ENSPNYG00000002275 ENSPNYG00000002243 MAFG (ENSPNYG00000002228) ENSPNYG00000002215 SIRT7 (ENSPNYG00000002181) pcyt2 (ENSPNYG00000002121) gnav1 (ENSPNYG00000002087) npb (ENSPNYG00000002038) sgsh (ENSPNYG00000002001) slc26a11 (ENSPNYG00000001883) ENSPNYG00000001850 ##22 ENSPNYG00000001825 ##22 ENSPNYG00000001814 nanos3 (ENSPNYG00000001788) CC2D1A (ENSPNYG00000001590) mri1 (ENSPNYG00000001542) zgc:136864 (ENSPNYG00000001528) ENSPNYG00000001504 ENSPNYG00000001464 khsrp (ENSPNYG00000001374) DCAF15 (ENSPNYG00000001330) RFX1 (ENSPNYG00000001317) rln3b (ENSPNYG00000001301) TNPO2 (ENSPNYG00000001235) NHERF2 (ENSPNYG00000001179) NTHL1 (ENSPNYG00000001147) TSC2 (ENSPNYG00000001025) Haplochromini_B ANCESTRAL SPECIES 23 ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.a ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a Zebra mbuna MODERN SPECIES 1109 TMC6 (ENSMZEG00005008039) NOTUM (ENSMZEG00005008014) aspscr1 (ENSMZEG00005007985) ENSMZEG00005007980 ENSMZEG00005007974 ENSMZEG00005007964 MAFG (ENSMZEG00005007955) ENSMZEG00005007948 SIRT7 (ENSMZEG00005007936) pcyt2 (ENSMZEG00005007912) gnav1 (ENSMZEG00005007895) npb (ENSMZEG00005007885) sgsh (ENSMZEG00005007867) slc26a11 (ENSMZEG00005007858) ENSMZEG00005007843 ENSMZEG00005007755 ##22 ENSMZEG00005007722 ##22 ENSMZEG00005007712 ##22 ENSMZEG00005007707 ENSMZEG00005007701 nanos3 (ENSMZEG00005007690) CC2D1A (ENSMZEG00005007673) mri1 (ENSMZEG00005007657) zgc:136864 (ENSMZEG00005007631) ENSMZEG00005007622 ENSMZEG00005007598 DCAF15 (ENSMZEG00005007530) RFX1 (ENSMZEG00005007468) rln3b (ENSMZEG00005007510) TNPO2 (ENSMZEG00005007408) NHERF2 (ENSMZEG00005007390) Nile tilapia MODERN SPECIES 18 TMC8 (ENSONIG00000018787) TMC6 (ENSONIG00000018785) NOTUM (ENSONIG00000018783) aspscr1 (ENSONIG00000018780) ENSONIG00000040220 ENSONIG00000031715 ENSONIG00000018774 MAFG (ENSONIG00000032504) ENSONIG00000025578 SIRT7 (ENSONIG00000017759) pcyt2 (ENSONIG00000017756) npb (ENSONIG00000027286) gnav1 (ENSONIG00000017752) sgsh (ENSONIG00000017748) slc26a11 (ENSONIG00000017745) ENSONIG00000017739 ##22 ENSONIG00000028581 ##22 ENSONIG00000039217 ENSONIG00000026626 nos (ENSONIG00000020588) CC2D1A (ENSONIG00000017736) mri1 (ENSONIG00000017732) zgc:136864 (ENSONIG00000043085) ENSONIG00000041822 ENSONIG00000017723 khsrp (ENSONIG00000017713) DCAF15 (ENSONIG00000017709) RFX1 (ENSONIG00000028286) rln3b (ENSONIG00000017708) TNPO2 (ENSONIG00000017706) ENSONIG00000028869 Pseudocrenilabrinae DUPLICATION Pseudocrenilabrinae DUPLICATION Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.f.e.b.a.a ##22 Nile tilapia DUPLICATION Nile tilapia MODERN SPECIES 12 gpr182 (ENSONIG00000021130) ENSONIG00000041197 igfbp6b (ENSONIG00000016561) spryd3 (ENSONIG00000016562) lima1a (ENSONIG00000016565) slc16a1b (ENSONIG00000016569) AVPR2 (ENSONIG00000016572) IDH3G (ENSONIG00000016573) FAM120C (ENSONIG00000016575) hsd17b10 (ENSONIG00000027180) ENSONIG00000038119 ENSONIG00000039737 ENSONIG00000016583 ENSONIG00000040127 ENSONIG00000027297 ##22 ENSONIG00000031199 ##22 ENSONIG00000034031 ##22 ENSONIG00000033251 ##22 ENSONIG00000004087 ENSONIG00000014581 ENSONIG00000030712 ##22 ENSONIG00000040125 ENSONIG00000041257 ENSONIG00000039995 ENSONIG00000033261 ENSONIG00000000730 CCM2L (ENSONIG00000000732) CDK16 (ENSONIG00000000736) rad51c (ENSONIG00000042488) abt1 (ENSONIG00000000750) grm6a (ENSONIG00000000755) Nile tilapia MODERN SPECIES 12 ZBTB39 (ENSONIG00000035885) gpr182 (ENSONIG00000021130) ENSONIG00000041197 igfbp6b (ENSONIG00000016561) spryd3 (ENSONIG00000016562) lima1a (ENSONIG00000016565) slc16a1b (ENSONIG00000016569) AVPR2 (ENSONIG00000016572) IDH3G (ENSONIG00000016573) FAM120C (ENSONIG00000016575) hsd17b10 (ENSONIG00000027180) ENSONIG00000038119 ENSONIG00000039737 ENSONIG00000016583 ENSONIG00000040127 ENSONIG00000027297 ##22 ENSONIG00000031199 ##22 ENSONIG00000034031 ##22 ENSONIG00000033251 ##22 ENSONIG00000004087 ENSONIG00000014581 ENSONIG00000030712 ##22 ENSONIG00000040125 ENSONIG00000041257 ENSONIG00000039995 ENSONIG00000033261 ENSONIG00000000730 CCM2L (ENSONIG00000000732) CDK16 (ENSONIG00000000736) rad51c (ENSONIG00000042488) abt1 (ENSONIG00000000750) Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.f.e.b.a.a ##22 Haplochromini ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.f.e.b.a.a ##22 Haplochromini_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.f.e.b.a.a ##22 Haplochromini_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.f.e.b.a.a ##22 Zebra mbuna MODERN SPECIES 125 ENSMZEG00005027861 ENSMZEG00005027863 ##22 ENSMZEG00005027864 ENSMZEG00005027866 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.f.e.b.a.b ##22 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.f.e.b.a.b ##22 Haplochromini ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.f.e.b.a.b ##22 Burton s mouthbrooder MODERN SPECIES 295 gpr182 (ENSHBUG00000009183) ENSHBUG00000009199 igfbp6b (ENSHBUG00000009215) spryd3 (ENSHBUG00000009269) lima1a (ENSHBUG00000009288) slc16a1b (ENSHBUG00000009304) AVPR2 (ENSHBUG00000009313) IDH3G (ENSHBUG00000009723) FAM120C (ENSHBUG00000009772) hsd17b10 (ENSHBUG00000009821) ENSHBUG00000009839 ENSHBUG00000009849 ENSHBUG00000009856 ENSHBUG00000009872 ENSHBUG00000009887 ENSHBUG00000009902 ##22 ENSHBUG00000009913 Haplochromini_A ANCESTRAL SPECIES 17 ENSGT00940000160722 ENSGT00940000154307.D ENSGT00940000156890.a.b ENSGT00940000160528.b ENSGT00940000158675.a ENSGT00940000158313.a.b ENSGT00940000154955.b ENSGT01050000244882.b.c.b.b ENSGT00950000182989.D.a.a.b ENSGT00530000063168.a.a.b ENSGT00940000155170 ENSGT00600000085659.b.db.d ENSGT00600000085659.b.cb.a ENSGT00950000182888.a.a.a.f ENSGT01030000234941.d.a ENSGT00950000183145.B.a.a.b.f.e.b.a.b ##22 ENSGT00940000154285.a.a.c.a.e.a ENSGT00940000156038.a.a.d.a.i.a ENSGT01030000234941.c.a ENSGT01030000234941.c.b ENSGT00400000022086.b.a.a ENSGT00390000016168.b ENSGT01070000253766.B.f.a ENSGT00940000156963.a.b ENSGT00390000002062 ENSGT00940000156805 ENSGT01030000234648.a.b.a.b.a.a ENSGT00390000012692 ENSGT00940000157877.b.g ENSGT01020000230394.e.a.a.b.a.b ENSGT00950000182955.a.b.a P. nyererei MODERN SPECIES 505 ENSPNYG00000019761 ##22 ENSPNYG00000019784 ENSPNYG00000019798 ENSPNYG00000019807 CABLES2 (ENSPNYG00000019819) ENSPNYG00000019834 ENSPNYG00000019847 xkr7b (ENSPNYG00000019858) CDK16 (ENSPNYG00000019878) abt1 (ENSPNYG00000019939) rad51c (ENSPNYG00000019952) grm6a (ENSPNYG00000019962) tsr2 (ENSPNYG00000019995) ENSPNYG00000020006 SRPK3 (ENSPNYG00000020031) ENSPNYG00000020080 Haplochromini_B ANCESTRAL SPECIES 14 ENSGT00940000158956.c ENSGT00940000160722 ENSGT00940000154307.D ENSGT00940000156890.a.b ENSGT00940000160528.b ENSGT00940000158675.a ENSGT00940000158313.a.b ENSGT00940000154955.b ENSGT01050000244882.b.c.b.b ENSGT00950000182989.D.a.a.b ENSGT00530000063168.a.a.b ENSGT00940000155170 ENSGT00600000085659.b.db.d ENSGT00600000085659.b.cb.b ENSGT00950000182888.a.a.a.f ENSGT00950000183145.B.a.a.b.f.e.b.a.b ##22 ENSGT00940000154285.a.a.c.a.e.a ENSGT00940000156038.a.a.d.a.i.a ENSGT01030000234941.c.a ENSGT01030000234941.c.b ENSGT00400000022086.b.a.a ENSGT00390000016168.b ENSGT01070000253766.B.f.a ENSGT00940000156963.a.b ENSGT00390000002062 ENSGT00940000156805 ENSGT01030000234648.a.b.a.b.a.a ENSGT00390000012692 ENSGT00940000157877.b.g ENSGT01020000230394.e.a.a.b.a.b ENSGT00950000182955.a.b.a Zebra mbuna MODERN SPECIES 1103 ZBTB39 (ENSMZEG00005026667) gpr182 (ENSMZEG00005026668) ENSMZEG00005026669 igfbp6b (ENSMZEG00005026673) spryd3 (ENSMZEG00005026676) lima1a (ENSMZEG00005026681) slc16a1b (ENSMZEG00005026686) AVPR2 (ENSMZEG00005026693) IDH3G (ENSMZEG00005026700) FAM120C (ENSMZEG00005026707) hsd17b10 (ENSMZEG00005026712) ENSMZEG00005026713 ENSMZEG00005026715 ENSMZEG00005026716 ENSMZEG00005026717 ENSMZEG00005026718 ##22 ENSMZEG00005026721 ENSMZEG00005026733 ENSMZEG00005026734 ENSMZEG00005026736 ENSMZEG00005026737 CABLES2 (ENSMZEG00005026739) CCM2L (ENSMZEG00005026740) xkr7b (ENSMZEG00005026742) CDK16 (ENSMZEG00005026744) abt1 (ENSMZEG00005026748) rad51c (ENSMZEG00005026750) grm6a (ENSMZEG00005026751) tsr2 (ENSMZEG00005026752) SRPK3 (ENSMZEG00005026753) ENSMZEG00005026754 Nile tilapia MODERN SPECIES 12 slc16a1b (ENSONIG00000016569) AVPR2 (ENSONIG00000016572) IDH3G (ENSONIG00000016573) FAM120C (ENSONIG00000016575) hsd17b10 (ENSONIG00000027180) ENSONIG00000038119 ENSONIG00000039737 ENSONIG00000016583 ENSONIG00000040127 ENSONIG00000027297 ##22 ENSONIG00000031199 ##22 ENSONIG00000034031 ##22 ENSONIG00000033251 ##22 ENSONIG00000004087 ENSONIG00000014581 ENSONIG00000030712 ##22 ENSONIG00000040125 ENSONIG00000041257 ENSONIG00000039995 ENSONIG00000033261 ENSONIG00000000730 CCM2L (ENSONIG00000000732) CDK16 (ENSONIG00000000736) rad51c (ENSONIG00000042488) abt1 (ENSONIG00000000750) grm6a (ENSONIG00000000755) tsr2 (ENSONIG00000000763) SRPK3 (ENSONIG00000000769) PLXNB3 (ENSONIG00000000783) abcd1 (ENSONIG00000000793) ENSONIG00000000800 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.f.e.b.b ##22 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.f.e.b.b ##22 Lyretail cichlid MODERN SPECIES 397 ENSNBRG00000007485 ##22 ENSNBRG00000007515 ENSNBRG00000007534 ENSNBRG00000007543 ENSNBRG00000007547 ENSNBRG00000007573 ENSNBRG00000007589 xkr7b (ENSNBRG00000007600) ENSNBRG00000007616 rad51c (ENSNBRG00000007632) GRM6 (ENSNBRG00000007667) tsr2 (ENSNBRG00000007965) ENSNBRG00000007974 SRPK3 (ENSNBRG00000007989) PLXNB3 (ENSNBRG00000008035) abcd1 (ENSNBRG00000008264) Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.f.f ##22 Nile tilapia MODERN SPECIES 12 ENSONIG00000041197 igfbp6b (ENSONIG00000016561) spryd3 (ENSONIG00000016562) lima1a (ENSONIG00000016565) slc16a1b (ENSONIG00000016569) AVPR2 (ENSONIG00000016572) IDH3G (ENSONIG00000016573) FAM120C (ENSONIG00000016575) hsd17b10 (ENSONIG00000027180) ENSONIG00000038119 ENSONIG00000039737 ENSONIG00000016583 ENSONIG00000040127 ENSONIG00000027297 ##22 ENSONIG00000031199 ##22 ENSONIG00000034031 ##22 ENSONIG00000033251 ##22 ENSONIG00000004087 ENSONIG00000014581 ENSONIG00000030712 ##22 ENSONIG00000040125 ENSONIG00000041257 ENSONIG00000039995 ENSONIG00000033261 ENSONIG00000000730 CCM2L (ENSONIG00000000732) CDK16 (ENSONIG00000000736) rad51c (ENSONIG00000042488) abt1 (ENSONIG00000000750) grm6a (ENSONIG00000000755) tsr2 (ENSONIG00000000763) Percomorphaceae_C ANCESTRAL SPECIES 3 ENSGT00530000069282.A ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00950000182849.B.d Eupercaria ANCESTRAL SPECIES 78 ENSGT00940000156038.a.a.d.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00950000183145.A.b.a ##22 Eupecaria_A ANCESTRAL SPECIES 85 ENSGT00940000156038.a.a.d.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00950000183145.A.b.a ##22 Ballan wrasse MODERN SPECIES 551 ENSLBEG00000009340 NOTUM (ENSLBEG00000009362) aspscr1 (ENSLBEG00000009416) ENSLBEG00000009467 ENSLBEG00000009499 MAFG (ENSLBEG00000009556) ENSLBEG00000009572 SIRT7 (ENSLBEG00000009603) pcyt2 (ENSLBEG00000009673) gnav1 (ENSLBEG00000009754) npb (ENSLBEG00000009804) sgsh (ENSLBEG00000009864) slc26a11 (ENSLBEG00000009932) ENSLBEG00000009971 ENSLBEG00000010070 ENSLBEG00000010174 ##22 ENSLBEG00000010199 ##22 Eupecaria_B ANCESTRAL SPECIES 1 ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 ENSGT00940000156038.a.a.d.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a Eupecaria_C ANCESTRAL SPECIES 22 ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a Eupercaria_incertae_sedis ANCESTRAL SPECIES 21 ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a European seabass MODERN SPECIES 20 tk1 (ENSDLAG00005030785) syngr2b (ENSDLAG00005033299) ENSDLAG00005025036 TMC8 (ENSDLAG00005028642) TMC6 (ENSDLAG00005025047) ENSDLAG00005025069 aspscr1 (ENSDLAG00005025150) ENSDLAG00005030103 ENSDLAG00005011813 ENSDLAG00005029633 ENSDLAG00005011862 pcyt2 (ENSDLAG00005011939) ENSDLAG00005034199 slc26a11 (ENSDLAG00005012116) ENSDLAG00005028750 ENSDLAG00005012373 ##22 ENSDLAG00005012377 ENSDLAG00005032130 ENSDLAG00005034268 ENSDLAG00005012419 mri1 (ENSDLAG00005032444) ENSDLAG00005012490 ENSDLAG00005032778 ENSDLAG00005012611 ENSDLAG00005012653 ENSDLAG00005012795 ENSDLAG00005013013 ENSDLAG00005013310 NTHL1 (ENSDLAG00005013367) ENSDLAG00005013572 ENSDLAG00005016525 Perciformes ANCESTRAL SPECIES 209 ENSGT00940000156038.a.a.d.b ENSGT00950000183145.B.a.a.b.f ##22 Perciformes_a ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.f ##22 Pike perch MODERN SPECIES 443 SLC4A2 (ENSSLUG00000003216) ENSSLUG00000003202 ENSSLUG00000003186 ENSSLUG00000003154 ENSSLUG00000003142 ENSSLUG00000003133 ENSSLUG00000003056 ##22 ENSSLUG00000023149 trim55a (ENSSLUG00000023147) ENSSLUG00000023143 Cottioidei ANCESTRAL SPECIES ENSGT00950000183145.B.a.a.b.f ##22 Lumpfish MODERN SPECIES 16 znf513a (ENSCLMG00005018942) ENSCLMG00005018940 ENSCLMG00005018939 FNDC4 (ENSCLMG00005018938) ENSCLMG00005017923 ENSCLMG00005017914 sox7 (ENSCLMG00005017912) ENSCLMG00005017897 tdh (ENSCLMG00005017896) mtmr9 (ENSCLMG00005017889) xkr6b (ENSCLMG00005017887) ccm2 (ENSCLMG00005017835) fam167ab (ENSCLMG00005017832) ENSCLMG00005017831 sh3bgrl2 (ENSCLMG00005017830) ENSCLMG00005017816 ##22 ENSCLMG00005017811 rps12 (ENSCLMG00005017809) eya4 (ENSCLMG00005017245) ENSCLMG00005017225 ENSCLMG00005017224 tcf21 (ENSCLMG00005017223) tbpl1 (ENSCLMG00005017222) slc2a12 (ENSCLMG00005017218) SGK1 (ENSCLMG00005017211) aldh8a1 (ENSCLMG00005017206) hbs1l (ENSCLMG00005015562) myb (ENSCLMG00005015556) PDE7B (ENSCLMG00005015554) mtfr2 (ENSCLMG00005015553) armc1l (ENSCLMG00005015552) Percomorphaceae_D ANCESTRAL SPECIES ENSGT00530000069282.A ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a Anabantaria ANCESTRAL SPECIES 1 ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00510000047513 Anabantoidei ANCESTRAL SPECIES ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a ENSGT00510000047513 Climbing perch MODERN SPECIES TMC8 (ENSATEG00000020004) TMC6 (ENSATEG00000019964) ENSATEG00000019940 aspscr1 (ENSATEG00000019927) ENSATEG00000019897 ENSATEG00000019873 MAFG (ENSATEG00000019866) ENSATEG00000019852 SIRT7 (ENSATEG00000019785) pcyt2 (ENSATEG00000019734) gnav1 (ENSATEG00000019693) npb (ENSATEG00000019653) sgsh (ENSATEG00000019621) slc26a11 (ENSATEG00000019534) ENSATEG00000019521 #22 ENSATEG00000019502 ##22 ENSATEG00000026831 ENSATEG00000025501 nanos3 (ENSATEG00000027158) CC2D1A (ENSATEG00000019431) mri1 (ENSATEG00000019410) zgc:136864 (ENSATEG00000025205) ENSATEG00000019388 ENSATEG00000019353 khsrp (ENSATEG00000019332) DCAF15 (ENSATEG00000019319) ENSATEG00000019287 rln3b (ENSATEG00000019231) ENSATEG00000019171 ENSATEG00000019157 NTHL1 (ENSATEG00000019126) Carangaria ANCESTRAL SPECIES ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00390000007091 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a Carangaria_A ANCESTRAL SPECIES 24 ENSGT00530000069282.B ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a Seriola ANCESTRAL SPECIES 11 ENSGT00950000182935.B.a.c ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT01100000263525.a.b.a.a ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a Greater amberjack DUPLICATION Greater amberjack MODERN SPECIES 84 tk1 (ENSSDUG00000001455) syngr2b (ENSSDUG00000001485) TMC8 (ENSSDUG00000001533) TMC6 (ENSSDUG00000001594) NOTUM (ENSSDUG00000001646) aspscr1 (ENSSDUG00000001678) ENSSDUG00000001716 ENSSDUG00000001749 MAFG (ENSSDUG00000001779) SIRT7 (ENSSDUG00000001789) pcyt2 (ENSSDUG00000001820) gnav1 (ENSSDUG00000001865) npb (ENSSDUG00000001901) sgsh (ENSSDUG00000001936) slc26a11 (ENSSDUG00000001983) ENSSDUG00000002038 ##22 ENSSDUG00000002044 ENSSDUG00000002055 ##22 ENSSDUG00000002066 ##22 ENSSDUG00000002094 nanos3 (ENSSDUG00000002131) CC2D1A (ENSSDUG00000002160) mri1 (ENSSDUG00000002275) zgc:136864 (ENSSDUG00000002291) ENSSDUG00000002326 ENSSDUG00000002348 khsrp (ENSSDUG00000002390) DCAF15 (ENSSDUG00000002448) RFX1 (ENSSDUG00000002511) rln3b (ENSSDUG00000002552) TNPO2 (ENSSDUG00000002607) Greater amberjack MODERN SPECIES 84 TMC6 (ENSSDUG00000001594) NOTUM (ENSSDUG00000001646) aspscr1 (ENSSDUG00000001678) ENSSDUG00000001716 ENSSDUG00000001749 MAFG (ENSSDUG00000001779) SIRT7 (ENSSDUG00000001789) pcyt2 (ENSSDUG00000001820) gnav1 (ENSSDUG00000001865) npb (ENSSDUG00000001901) sgsh (ENSSDUG00000001936) slc26a11 (ENSSDUG00000001983) ENSSDUG00000002038 ##22 ENSSDUG00000002044 ENSSDUG00000002055 ##22 ENSSDUG00000002066 ##22 ENSSDUG00000002094 nanos3 (ENSSDUG00000002131) CC2D1A (ENSSDUG00000002160) mri1 (ENSSDUG00000002275) zgc:136864 (ENSSDUG00000002291) ENSSDUG00000002326 ENSSDUG00000002348 khsrp (ENSSDUG00000002390) DCAF15 (ENSSDUG00000002448) RFX1 (ENSSDUG00000002511) rln3b (ENSSDUG00000002552) TNPO2 (ENSSDUG00000002607) NHERF2 (ENSSDUG00000002671) ENSSDUG00000002684 NTHL1 (ENSSDUG00000002707) Yellowtail amberjack MODERN SPECIES 3041 syngr2b (ENSSLDG00000012174) TMC8 (ENSSLDG00000012181) TMC6 (ENSSLDG00000012223) NOTUM (ENSSLDG00000012241) aspscr1 (ENSSLDG00000012283) ENSSLDG00000012314 ENSSLDG00000012331 MAFG (ENSSLDG00000012357) ENSSLDG00000012375 SIRT7 (ENSSLDG00000012403) pcyt2 (ENSSLDG00000012438) gnav1 (ENSSLDG00000012475) npb (ENSSLDG00000012517) sgsh (ENSSLDG00000012536) slc26a11 (ENSSLDG00000012566) ENSSLDG00000012608 ##22 ENSSLDG00000012617 ENSSLDG00000012628 ##22 ENSSLDG00000012639 nanos3 (ENSSLDG00000012674) CC2D1A (ENSSLDG00000012710) mri1 (ENSSLDG00000012900) zgc:136864 (ENSSLDG00000012924) ENSSLDG00000012935 ENSSLDG00000012965 khsrp (ENSSLDG00000012993) DCAF15 (ENSSLDG00000013026) RFX1 (ENSSLDG00000013063) rln3b (ENSSLDG00000013091) TNPO2 (ENSSLDG00000013107) NHERF2 (ENSSLDG00000013152) Protacanthopterygii ANCESTRAL SPECIES 67 ENSGT00950000182960.a.b ENSGT00940000160116.b ENSGT01090000260240 ENSGT00390000003070.a.a ENSGT00940000156691 ENSGT00390000017548.b.a ENSGT00940000161116.w.a ENSGT00390000007463 ENSGT00390000004428.a.a ENSGT00920000149199 ENSGT01080000257365.a.c ENSGT01030000234586.B.a.a.b ENSGT00940000157836.a ENSGT00950000182983.A.a.a.a ENSGT00950000183145.A.a.m.a ##22 ENSGT00950000183145.B.a.a.b ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00940000160377.g.a ENSGT00390000007688.b ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b.c ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b Northern pike MODERN SPECIES 10 BAHCC1 (ENSELUG00000013763) ENSELUG00000013756 HID1 (ENSELUG00000029719) OTOP2 (ENSELUG00000013719) USH1G (ENSELUG00000013709) ENSELUG00000013690 ENSELUG00000013658 zgc:112148 (ENSELUG00000025954) ENSELUG00000013617 ENSELUG00000013605 ENSELUG00000013587 KCNJ2 (ENSELUG00000013572) MAP2K6 (ENSELUG00000013563) BTBD17 (ENSELUG00000013524) ENSELUG00000025793 ##22 ENSELUG00000013514 ##22 ENSELUG00000013486 trub1 (ENSELUG00000000502) STUB1 (ENSELUG00000013462) JMJD8 (ENSELUG00000013430) tufm (ENSELUG00000013410) hspbp1 (ENSELUG00000034506) tmem86b (ENSELUG00000013383) aspdh (ENSELUG00000013356) gys1 (ENSELUG00000013344) pold1 (ENSELUG00000013313) ENSELUG00000024884 zgc:55558 (ENSELUG00000013260) SLC17A7 (ENSELUG00000013207) ENSELUG00000013148 eps8l1a (ENSELUG00000013057) Salmoninae ANCESTRAL SPECIES 1797 ENSGT00950000183145.B.a.a.b ##22 ENSGT00940000156038.a.a.d.a.b Huchen MODERN SPECIES 977 ENSHHUG00000033993 abi3a (ENSHHUG00000033998) mpp2a (ENSHHUG00000034002) pyya (ENSHHUG00000034047) hspb9 (ENSHHUG00000034053) rarab (ENSHHUG00000034059) ENSHHUG00000034286 ##22 ENSHHUG00000034298 ##22 ENSHHUG00000034304 Salmoninae_a ANCESTRAL SPECIES 717 ENSGT00950000183145.B.a.a.b ##22 ENSGT00940000156038.a.a.d.a.b.b Salmo ANCESTRAL SPECIES 619 ENSGT00950000183145.B.a.a.b ##22 ENSGT00940000156038.a.a.d.a.b.b Atlantic salmon MODERN SPECIES 25 ENSSSAG00000003142 HID1 (ENSSSAG00000042071) ENSSSAG00000042050 otop2 (ENSSSAG00000109219) USH1G (ENSSSAG00000082647) ENSSSAG00000103248 ENSSSAG00000001763 ENSSSAG00000107412 zgc:112148 (ENSSSAG00000041942) ENSSSAG00000041930 ENSSSAG00000041920 ENSSSAG00000099402 ENSSSAG00000103258 ENSSSAG00000043083 ENSSSAG00000121692 ENSSSAG00000108765 ##22 ENSSSAG00000003794 ENSSSAG00000100555 ENSSSAG00000037415 ENSSSAG00000092301 ENSSSAG00000114335 ENSSSAG00000038060 ENSSSAG00000105959 ENSSSAG00000109792 ENSSSAG00000038781 ENSSSAG00000038959 ENSSSAG00000039167 hpbp1 (ENSSSAG00000039100) tmem86b (ENSSSAG00000116204) aspdh (ENSSSAG00000110735) gys1 (ENSSSAG00000042664) Sarcopterygii ANCESTRAL SPECIES 13 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000165188 ENSGT00940000157052 #18 ENSGT00390000010398.A ENSGT00940000169682 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Tetrapoda ANCESTRAL SPECIES 17 ENSGT00940000161426 ENSGT00940000160482 #7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Amniota ANCESTRAL SPECIES 206 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 Sauria ANCESTRAL SPECIES 354 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 Lepidosauria ANCESTRAL SPECIES 388 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 Episquamata ANCESTRAL SPECIES 248 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 Toxicofera ANCESTRAL SPECIES 280 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 Elapidae ANCESTRAL SPECIES 252 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b.a ##22 Elapidae_a ANCESTRAL SPECIES 415 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b.a ##22 Acanthophiinae ANCESTRAL SPECIES 378 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b.a ##22 Eastern brown snake MODERN SPECIES 25 BAG3 (ENSPTXG00000011470) #8 INPP5F (ENSPTXG00000011471) #9 MCMBP (ENSPTXG00000011480) #10 SEC23IP (ENSPTXG00000011814) #11 PLPP4 (ENSPTXG00000011887) #12 WDR11 (ENSPTXG00000011888) #13 FGFR2 (ENSPTXG00000011890) #14 ATE1 (ENSPTXG00000011891) #15 NSMCE4A (ENSPTXG00000011892) #17 ENSPTXG00000011893 #18 BTBD16 (ENSPTXG00000011894) #19 PLEKHA1 (ENSPTXG00000011895) #20 HTRA1 (ENSPTXG00000011896) #21 ENSPTXG00000011897 ##22 ENSPTXG00000011898 ENSPTXG00000011899 ##22 ENSPTXG00000011900 ##22 ENSPTXG00000011901 ##22 ENSPTXG00000011902 ENSPTXG00000011903 #29 PSTK (ENSPTXG00000011904) IKZF5 (ENSPTXG00000011905) ACADSB (ENSPTXG00000011906) HMX3 (ENSPTXG00000011907) HMX2 (ENSPTXG00000011908) BUB3 (ENSPTXG00000011909) ENSPTXG00000011910 GPR26 (ENSPTXG00000011911) CPXM2 (ENSPTXG00000011912) CHST15 (ENSPTXG00000011913) OAT (ENSPTXG00000011914) Blue-lipped sea krait MODERN SPECIES 5156 ENSLLTG00000009471 ##22 Indian cobra MODERN SPECIES 3 ENSNNAG00000005871 BAG3 (ENSNNAG00000005857) #8 INPP5F (ENSNNAG00000005737) #9 MCMBP (ENSNNAG00000005668) #10 SEC23IP (ENSNNAG00000005588) #11 PLPP4 (ENSNNAG00000005540) #12 WDR11 (ENSNNAG00000005498) #13 FGFR2 (ENSNNAG00000005354) #14 ATE1 (ENSNNAG00000005291) #15 ENSNNAG00000005253 TACC2 (ENSNNAG00000004956) #18 BTBD16 (ENSNNAG00000004840) #19 PLEKHA1 (ENSNNAG00000004758) #20 HTRA1 (ENSNNAG00000004719) #21 ENSNNAG00000004693 ##22 ENSNNAG00000004671 ##22 ENSNNAG00000004649 ENSNNAG00000004527 #22 ENSNNAG00000004497 ##22 ENSNNAG00000003976 ##22 ENSNNAG00000003929 C10orf88 (ENSNNAG00000003898) #29 ENSNNAG00000003842 PSTK (ENSNNAG00000003820) IKZF5 (ENSNNAG00000003799) ACADSB (ENSNNAG00000003781) HMX3 (ENSNNAG00000003758) HMX2 (ENSNNAG00000003744) BUB3 (ENSNNAG00000003731) ENSNNAG00000003714 ENSNNAG00000003699 Archelosauria ANCESTRAL SPECIES ENSGT00950000183145.B.a.a ##22 Archosauria ANCESTRAL SPECIES ENSGT00950000183145.B.a.a ##22 Aves ANCESTRAL SPECIES ENSGT00950000183145.B.a.a ##22 Neognathae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a ##22 Galloanserae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a ##22 Phasianidae ANCESTRAL SPECIES ENSGT00950000183145.B.a.a ##22 Phasianidae_b ANCESTRAL SPECIES ENSGT00950000183145.B.a.a ##22 Chicken MODERN SPECIES 35 BAG3 (ENSGALG00010002371) #8 INPP5F (ENSGALG00010002383) #9 MCMBP (ENSGALG00010002387) #10 SEC23IP (ENSGALG00010002396) #11 PLPP4 (ENSGALG00010001287) #12 WDR11 (ENSGALG00010001398) #13 FGFR2 (ENSGALG00010001411) #14 ATE1 (ENSGALG00010001426) #15 NSMCE4A (ENSGALG00010001432) #17 TACC2 (ENSGALG00010001465) #18 PLEKHA1 (ENSGALG00010001702) #20 HTRA1 (ENSGALG00010001705) #21 ENSGALG00010001707 #22 ENSGALG00010001726 ENSGALG00010003199 #22 ENSGALG00010001743 ##22 CUZD1 (ENSGALG00010001755) #27 C10orf88 (ENSGALG00010001759) #29 ENSGALG00010001764 IKZF5 (ENSGALG00010001793) PSTK (ENSGALG00010001798) ACADSB (ENSGALG00010001811) HMX3 (ENSGALG00010001815) HMX2 (ENSGALG00010001821) BUB3 (ENSGALG00010001832) GPR26 (ENSGALG00010001842) CPXM2 (ENSGALG00010001852) CHST15 (ENSGALG00010001856) OAT (ENSGALG00010001877) ENSGALG00010001884 LHPP (ENSGALG00010001898) Coelacanth MODERN SPECIES 1184 ENSLACG00000011935 ENSLACG00000011435 ##22 ENSLACG00000011071 ENSLACG00000010543 samhd1 (ENSLACG00000010024) ENSLACG00000009914 ENSLACG00000009424 samhd1 (ENSLACG00000009199) ENSLACG00000008137 ENSLACG00000007842 ENSLACG00000006714 ENSLACG00000006085 ENSLACG00000005910 ENSLACG00000005411 ENSLACG00000004370 ENSLACG00000002961 ENSLACG00000000467 Elephant shark DUPLICATION Elephant shark DUPLICATION Elephant shark MODERN SPECIES 2441 ENSCMIG00000006881 ##22 ENSCMIG00000006878 ENSCMIG00000006876 ##22 ENSCMIG00000006870 ENSCMIG00000006869 Elephant shark MODERN SPECIES 2511 ENSCMIG00000001293 ENSCMIG00000001318 ##22 Elephant shark MODERN SPECIES 204 ENSCMIG00000001273 ##22 Elephant shark MODERN SPECIES 1705 ENSCMIG00000013761 ENSCMIG00000013765 ENSCMIG00000013767 ENSCMIG00000013768 ENSCMIG00000013771 ##22 ENSCMIG00000013773 ##22 ENSCMIG00000013776 ENSCMIG00000013782 ENSCMIG00000013791 ENSCMIG00000013793 ENSCMIG00000013796 ENSCMIG00000013800 ENSCMIG00000013801 ENSCMIG00000013803 ENSCMIG00000013805 ENSCMIG00000013807 ENSCMIG00000013808 ENSCMIG00000013809 ENSCMIG00000013811 ENSCMIG00000013813 ENSCMIG00000013816 Gnathostomata ANCESTRAL SPECIES ENSGT00950000183145.B.a.b ##22 Euteleostomi ANCESTRAL SPECIES 625 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.B.a.a ##22 Sarcopterygii ANCESTRAL SPECIES 13 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000165188 ENSGT00940000157052 #18 ENSGT00390000010398.A ENSGT00940000169682 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 Tetrapoda ANCESTRAL SPECIES 17 ENSGT00940000160482 #7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 ENSGT00940000159002 Anura ANCESTRAL SPECIES ENSGT00950000183145.B.a.b ##22 Leishan spiny toad MODERN SPECIES 9 OAT (ENSLLEG00000027829) ENSLLEG00000027933 CHST15 (ENSLLEG00000028004) ENSLLEG00000028167 CPXM2 (ENSLLEG00000028178) GPR26 (ENSLLEG00000028244) BUB3 (ENSLLEG00000028262) HMX2 (ENSLLEG00000028332) GBA2 (ENSLLEG00000028430) HMX3 (ENSLLEG00000029455) ACADSB (ENSLLEG00000029470) IKZF5 (ENSLLEG00000029492) PSTK (ENSLLEG00000029522) ENSLLEG00000029534 ENSLLEG00000029566 ENSLLEG00000029588 ##22 HTRA1 (ENSLLEG00000029621) #21 TACC2 (ENSLLEG00000029844) #18 NSMCE4A (ENSLLEG00000030045) #17 ENSLLEG00000030064 #29 ATE1 (ENSLLEG00000030100) #15 ENSLLEG00000030118 FGFR2 (ENSLLEG00000030188) #14 ENSLLEG00000030468 ENSLLEG00000030474 WDR11 (ENSLLEG00000030484) #13 ENSLLEG00000030509 #12 ENSLLEG00000030520 TMEM52B (ENSLLEG00000030541) ENSLLEG00000030548 ENSLLEG00000030564 Amniota ANCESTRAL SPECIES 206 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 Mammalia ANCESTRAL SPECIES 254 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 Theria ANCESTRAL SPECIES ENSGT00950000183145.B.a.b ##22 Eutheria ANCESTRAL SPECIES ENSGT00950000183145.B.a.b ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000183145.B.a.b ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000183145.B.a.b ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000183145.B.a.b ##22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000183145.B.a.b ##22 Carnivora ANCESTRAL SPECIES ENSGT00950000183145.B.a.b ##22 Caniformia ANCESTRAL SPECIES ENSGT00950000183145.B.a.b ##22 Canidae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b ##22 Canis_lupus ANCESTRAL SPECIES 20 ENSGT00940000156602 #11 ENSGT00390000004380.e.a.a ENSGT00940000163657.f ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000016534.B #16 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E.kb.b #22 ENSGT00950000183145.E.kb.a #22 ENSGT00950000183145.B.a.b ##22 ENSGT00950000183145.E.lb #22 ENSGT00390000005511 #24 ENSGT00940000162108.tb #25 ENSGT00940000162108.sb.b #25 ENSGT00940000154525.b.a #27 ENSGT00940000163005.b #28 ENSGT00390000017384.hb.f #29 ENSGT00390000017384.hb.e #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a Dog MODERN SPECIES 20 SEC23IP (ENSCAFG00845018243) #11 ENSCAFG00845018569 ENSCAFG00845018618 PLPP4 (ENSCAFG00845018703) #12 WDR11 (ENSCAFG00845018912) #13 FGFR2 (ENSCAFG00845019372) #14 ATE1 (ENSCAFG00845020272) #15 ATE1OS (ENSCAFG00845020507) #16 NSMCE4A (ENSCAFG00845020544) #17 TACC2 (ENSCAFG00845020783) #18 BTBD16 (ENSCAFG00845021873) #19 PLEKHA1 (ENSCAFG00845022104) #20 HTRA1 (ENSCAFG00845022222) #21 ENSCAFG00845022418 #22 ENSCAFG00845023612 #22 ENSCAFG00845023643 ##22 C10orf120 (ENSCAFG00845023695) #24 ENSCAFG00845023783 #25 CUZD1 (ENSCAFG00845024055) #27 ENSCAFG00845024126 #28 ENSCAFG00845024159 #29 ENSCAFG00845024221 #29 PSTK (ENSCAFG00845024287) IKZF5 (ENSCAFG00845024334) ACADSB (ENSCAFG00845024388) HMX3 (ENSCAFG00845024473) HMX2 (ENSCAFG00845024515) PSTK (ENSCAFG00845024586) GPR26 (ENSCAFG00845024706) CHST15 (ENSCAFG00845024829) ENSCAFG00845025131 Sauria ANCESTRAL SPECIES 354 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 Lepidosauria ANCESTRAL SPECIES 388 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 Episquamata ANCESTRAL SPECIES 248 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 Toxicofera ANCESTRAL SPECIES 280 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 Elapidae DUPLICATION Elapidae ANCESTRAL SPECIES 252 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b.a ##22 Elapidae_a ANCESTRAL SPECIES 415 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b.a ##22 Acanthophiinae ANCESTRAL SPECIES 378 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b.a ##22 Eastern brown snake DUPLICATION Eastern brown snake MODERN SPECIES 25 INPP5F (ENSPTXG00000011471) #9 MCMBP (ENSPTXG00000011480) #10 SEC23IP (ENSPTXG00000011814) #11 PLPP4 (ENSPTXG00000011887) #12 WDR11 (ENSPTXG00000011888) #13 FGFR2 (ENSPTXG00000011890) #14 ATE1 (ENSPTXG00000011891) #15 NSMCE4A (ENSPTXG00000011892) #17 ENSPTXG00000011893 #18 BTBD16 (ENSPTXG00000011894) #19 PLEKHA1 (ENSPTXG00000011895) #20 HTRA1 (ENSPTXG00000011896) #21 ENSPTXG00000011897 ##22 ENSPTXG00000011898 ENSPTXG00000011899 ##22 ENSPTXG00000011900 ##22 ENSPTXG00000011901 ##22 ENSPTXG00000011902 ENSPTXG00000011903 #29 PSTK (ENSPTXG00000011904) IKZF5 (ENSPTXG00000011905) ACADSB (ENSPTXG00000011906) HMX3 (ENSPTXG00000011907) HMX2 (ENSPTXG00000011908) BUB3 (ENSPTXG00000011909) ENSPTXG00000011910 GPR26 (ENSPTXG00000011911) CPXM2 (ENSPTXG00000011912) CHST15 (ENSPTXG00000011913) OAT (ENSPTXG00000011914) NKX1-2 (ENSPTXG00000011915) Eastern brown snake MODERN SPECIES 25 MCMBP (ENSPTXG00000011480) #10 SEC23IP (ENSPTXG00000011814) #11 PLPP4 (ENSPTXG00000011887) #12 WDR11 (ENSPTXG00000011888) #13 FGFR2 (ENSPTXG00000011890) #14 ATE1 (ENSPTXG00000011891) #15 NSMCE4A (ENSPTXG00000011892) #17 ENSPTXG00000011893 #18 BTBD16 (ENSPTXG00000011894) #19 PLEKHA1 (ENSPTXG00000011895) #20 HTRA1 (ENSPTXG00000011896) #21 ENSPTXG00000011897 ##22 ENSPTXG00000011898 ENSPTXG00000011899 ##22 ENSPTXG00000011900 ##22 ENSPTXG00000011901 ##22 ENSPTXG00000011902 ENSPTXG00000011903 #29 PSTK (ENSPTXG00000011904) IKZF5 (ENSPTXG00000011905) ACADSB (ENSPTXG00000011906) HMX3 (ENSPTXG00000011907) HMX2 (ENSPTXG00000011908) BUB3 (ENSPTXG00000011909) ENSPTXG00000011910 GPR26 (ENSPTXG00000011911) CPXM2 (ENSPTXG00000011912) CHST15 (ENSPTXG00000011913) OAT (ENSPTXG00000011914) NKX1-2 (ENSPTXG00000011915) LHPP (ENSPTXG00000011916) Indian cobra MODERN SPECIES 3 SEC23IP (ENSNNAG00000005588) #11 PLPP4 (ENSNNAG00000005540) #12 WDR11 (ENSNNAG00000005498) #13 FGFR2 (ENSNNAG00000005354) #14 ATE1 (ENSNNAG00000005291) #15 ENSNNAG00000005253 TACC2 (ENSNNAG00000004956) #18 BTBD16 (ENSNNAG00000004840) #19 PLEKHA1 (ENSNNAG00000004758) #20 HTRA1 (ENSNNAG00000004719) #21 ENSNNAG00000004693 ##22 ENSNNAG00000004671 ##22 ENSNNAG00000004649 ENSNNAG00000004527 #22 ENSNNAG00000004497 ##22 ENSNNAG00000003976 ##22 ENSNNAG00000003929 C10orf88 (ENSNNAG00000003898) #29 ENSNNAG00000003842 PSTK (ENSNNAG00000003820) IKZF5 (ENSNNAG00000003799) ACADSB (ENSNNAG00000003781) HMX3 (ENSNNAG00000003758) HMX2 (ENSNNAG00000003744) BUB3 (ENSNNAG00000003731) ENSNNAG00000003714 ENSNNAG00000003699 ENSNNAG00000003675 CPXM2 (ENSNNAG00000003642) CHST15 (ENSNNAG00000003620) ENSNNAG00000003603 Elapidae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.b ##22 Indian cobra MODERN SPECIES 3 MCMBP (ENSNNAG00000005668) #10 SEC23IP (ENSNNAG00000005588) #11 PLPP4 (ENSNNAG00000005540) #12 WDR11 (ENSNNAG00000005498) #13 FGFR2 (ENSNNAG00000005354) #14 ATE1 (ENSNNAG00000005291) #15 ENSNNAG00000005253 TACC2 (ENSNNAG00000004956) #18 BTBD16 (ENSNNAG00000004840) #19 PLEKHA1 (ENSNNAG00000004758) #20 HTRA1 (ENSNNAG00000004719) #21 ENSNNAG00000004693 ##22 ENSNNAG00000004671 ##22 ENSNNAG00000004649 ENSNNAG00000004527 #22 ENSNNAG00000004497 ##22 ENSNNAG00000003976 ##22 ENSNNAG00000003929 C10orf88 (ENSNNAG00000003898) #29 ENSNNAG00000003842 PSTK (ENSNNAG00000003820) IKZF5 (ENSNNAG00000003799) ACADSB (ENSNNAG00000003781) HMX3 (ENSNNAG00000003758) HMX2 (ENSNNAG00000003744) BUB3 (ENSNNAG00000003731) ENSNNAG00000003714 ENSNNAG00000003699 ENSNNAG00000003675 CPXM2 (ENSNNAG00000003642) CHST15 (ENSNNAG00000003620) Lizard MODERN SPECIES 2 ENSACAG00000045209 PPP2R2D (ENSACAG00000008068) BNIP3 (ENSACAG00000008046) JAKMIP3 (ENSACAG00000007932) DPYSL4 (ENSACAG00000007703) STK32C (ENSACAG00000007586) ENSACAG00000007576 PWWP2B (ENSACAG00000007567) INPP5A (ENSACAG00000005748) ENSACAG00000041088 ENSACAG00000027662 ENSACAG00000005789 ENSACAG00000037493 CFAP46 (ENSACAG00000005868) ENSACAG00000021034 ENSACAG00000043412 ##22 ENSACAG00000017438 #27 C10orf88 (ENSACAG00000017448) #29 ENSACAG00000042520 ENSACAG00000017452 PSTK (ENSACAG00000017467) IKZF5 (ENSACAG00000040076) ACADSB (ENSACAG00000017471) HMX3 (ENSACAG00000017490) HMX2 (ENSACAG00000017493) BUB3 (ENSACAG00000017494) GPR26 (ENSACAG00000017503) CPXM2 (ENSACAG00000017504) CHST15 (ENSACAG00000017532) ENSACAG00000040555 ENSACAG00000039920 Archelosauria ANCESTRAL SPECIES ENSGT00950000183145.B.a.b ##22 Archosauria ANCESTRAL SPECIES ENSGT00950000183145.B.a.b ##22 Australian saltwater crocodile MODERN SPECIES 68 ENSCPRG00005010403 PLPP4 (ENSCPRG00005010400) #12 WDR11 (ENSCPRG00005010238) #13 FGFR2 (ENSCPRG00005010191) #14 ATE1 (ENSCPRG00005010141) #15 NSMCE4A (ENSCPRG00005010129) #17 TACC2 (ENSCPRG00005010117) #18 ENSCPRG00005010107 BTBD16 (ENSCPRG00005010103) #19 PLEKHA1 (ENSCPRG00005010094) #20 HTRA1 (ENSCPRG00005010065) #21 ENSCPRG00005010058 ##22 ENSCPRG00005010028 ENSCPRG00005010020 ENSCPRG00005010017 ##22 ENSCPRG00005010015 ##22 ENSCPRG00005010013 ##22 ENSCPRG00005009997 CUZD1 (ENSCPRG00005009971) #27 C10orf88 (ENSCPRG00005009963) #29 ENSCPRG00005009952 PSTK (ENSCPRG00005009943) IKZF5 (ENSCPRG00005009941) ENSCPRG00005009939 ACADSB (ENSCPRG00005009928) HMX3 (ENSCPRG00005009925) HMX2 (ENSCPRG00005009921) BUB3 (ENSCPRG00005009920) GPR26 (ENSCPRG00005009894) CPXM2 (ENSCPRG00005009835) ENSCPRG00005009822 Actinopterygii ANCESTRAL SPECIES 528 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.B.a.a ##22 Neopterygii ANCESTRAL SPECIES 432 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.B.a.a.b ##22 Osteoglossocephalai ANCESTRAL SPECIES 716 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 Clupeocephala DUPLICATION Clupeocephala ANCESTRAL SPECIES 1090 ENSGT00950000183145.B.a.a.a.a ##22 ENSGT00950000183145.B.a.b.c ##22 Euteleosteomorpha ANCESTRAL SPECIES 848 ENSGT00950000183145.B.a.a.a.a ##22 ENSGT00950000183145.B.a.b.c ##22 Acanthomorphata ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.c ##22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.c ##22 Percomorphaceae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.c ##22 Percomorphaceae_B ANCESTRAL SPECIES 59 ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785 ENSGT00950000182995.e.a.b ENSGT00940000165576.a.b Percomorphaceae_C ANCESTRAL SPECIES 48 ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785 ENSGT00950000182995.e.a.b ENSGT00940000165576.a.b Eupercaria ANCESTRAL SPECIES 3 ENSGT00940000165079.b ENSGT00390000005602 ENSGT00390000006679.b ENSGT00940000173491 ENSGT00940000177154 ENSGT00940000156584.e.b ENSGT00940000164625.o.b.a.b ENSGT00940000164625.o.a ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00950000182995.e.a.b ENSGT00940000165576.a.b ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785 ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00940000164286.j.b.a.a.a ENSGT00940000165500.d.a ENSGT00390000003628.a.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT00940000155223.a.a ENSGT01030000234606.a.b.i.a ENSGT01030000234606.a.b.i.b ENSGT00390000018541 ENSGT00390000010157.b Eupecaria_A ANCESTRAL SPECIES 5 ENSGT00940000165079.b ENSGT00390000005602 ENSGT00390000006679.b ENSGT00940000173491 ENSGT00940000177154 ENSGT00940000156584.e.b ENSGT00940000164625.o.b.a.b ENSGT00940000164625.o.a ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00950000182995.e.a.b ENSGT00940000165576.a.b ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785 ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00940000164286.j.b.a.a.a ENSGT00940000165500.d.a ENSGT00390000003628.a.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT00940000155223.a.a ENSGT01030000234606.a.b.i.a ENSGT01030000234606.a.b.i.b ENSGT00390000018541 ENSGT00390000010157.b Eupecaria_B ANCESTRAL SPECIES ENSGT00940000165079.b ENSGT00390000005602 ENSGT00390000006679.b ENSGT00940000173491 ENSGT00940000177154 ENSGT00940000156584.e.b ENSGT00940000164625.o.b.a.b ENSGT00940000164625.o.a ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00950000182995.e.a.b ENSGT00940000165576.a.b ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785 ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00940000164286.j.b.a.a.a ENSGT00940000165500.d.a ENSGT00390000003628.a.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT00940000155223.a.a ENSGT01030000234606.a.b.i.a ENSGT01030000234606.a.b.i.b ENSGT00390000018541 ENSGT00390000010157.b Eupecaria_C ANCESTRAL SPECIES 105 ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785 ENSGT00950000182995.e.a.b Eupercaria_incertae_sedis ANCESTRAL SPECIES 139 ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785 ENSGT00950000182995.e.a.b Large yellow croaker MODERN SPECIES 1 ENSLCRG00005002182 inhbab (ENSLCRG00005002187) amph (ENSLCRG00005002197) ENSLCRG00005002580 bfsp2 (ENSLCRG00005002582) klhl18 (ENSLCRG00005002587) afg3l2 (ENSLCRG00005002651) ENSLCRG00005003365 fastk (ENSLCRG00005003388) ubtfl (ENSLCRG00005003995) asap1a (ENSLCRG00005004406) tmub1 (ENSLCRG00005004810) ENSLCRG00005004811 ttc19 (ENSLCRG00005004813) slc4a2a (ENSLCRG00005004880) ENSLCRG00005009759 ##22 ENSLCRG00005009761 ENSLCRG00005009766 ENSLCRG00005009874 ENSLCRG00005010053 adhfe1 (ENSLCRG00005010054) ENSLCRG00005010065 WDR33 (ENSLCRG00005010067) ENSLCRG00005010077 ENSLCRG00005010079 ENSLCRG00005010080 CYP7B1 (ENSLCRG00005010082) ENSLCRG00005010083 ENSLCRG00005010085 ENSLCRG00005010086 ENSLCRG00005010087 European seabass DUPLICATION European seabass DUPLICATION European seabass MODERN SPECIES 21 ENSDLAG00005013141 ENSDLAG00005015840 ENSDLAG00005034745 ENSDLAG00005002283 ENSDLAG00005024524 ENSDLAG00005024452 ENSDLAG00005024441 ENSDLAG00005033915 ENSDLAG00005030229 ENSDLAG00005028641 ##22 ENSDLAG00005027964 #25 ENSDLAG00005002383 #22 ENSDLAG00005027805 ENSDLAG00005033377 ENSDLAG00005024075 ENSDLAG00005030043 ##22 ENSDLAG00005034086 ENSDLAG00005024432 ENSDLAG00005031603 ENSDLAG00005031706 ##22 ENSDLAG00005024053 ENSDLAG00005030191 ENSDLAG00005024037 ENSDLAG00005034459 ENSDLAG00005019193 ENSDLAG00005031707 ENSDLAG00005024032 ENSDLAG00005023746 cyb561 (ENSDLAG00005023723) ENSDLAG00005017280 ENSDLAG00005033817 European seabass MODERN SPECIES 21 ENSDLAG00005024524 ENSDLAG00005024452 ENSDLAG00005024441 ENSDLAG00005033915 ENSDLAG00005030229 ENSDLAG00005028641 ##22 ENSDLAG00005027964 #25 ENSDLAG00005002383 #22 ENSDLAG00005027805 ENSDLAG00005033377 ENSDLAG00005024075 ENSDLAG00005030043 ##22 ENSDLAG00005034086 ENSDLAG00005024432 ENSDLAG00005031603 ENSDLAG00005031706 ##22 ENSDLAG00005024053 ENSDLAG00005030191 ENSDLAG00005024037 ENSDLAG00005034459 ENSDLAG00005019193 ENSDLAG00005031707 ENSDLAG00005024032 ENSDLAG00005023746 cyb561 (ENSDLAG00005023723) ENSDLAG00005017280 ENSDLAG00005033817 ENSDLAG00005006401 ENSDLAG00005023397 ENSDLAG00005027714 ENSDLAG00005023381 European seabass DUPLICATION European seabass MODERN SPECIES 21 ENSDLAG00005028641 ##22 ENSDLAG00005030229 ENSDLAG00005033915 ENSDLAG00005024441 ENSDLAG00005024452 ENSDLAG00005024524 ENSDLAG00005002283 ENSDLAG00005034745 ENSDLAG00005015840 ENSDLAG00005013141 ENSDLAG00005020571 ENSDLAG00005029541 ENSDLAG00005005891 ENSDLAG00005029231 ENSDLAG00005003089 ENSDLAG00005031171 ##22 ENSDLAG00005003072 ENSDLAG00005034927 ENSDLAG00005025373 ENSDLAG00005025370 ENSDLAG00005025367 timm29 (ENSDLAG00005025363) yipf2 (ENSDLAG00005028832) ENSDLAG00005025355 carm1 (ENSDLAG00005025319) si:dkey-204f11.64 (ENSDLAG00005033175) clpp (ENSDLAG00005025311) ENSDLAG00005026450 ENSDLAG00005033471 aldh3b1 (ENSDLAG00005025307) ENSDLAG00005025305 European seabass MODERN SPECIES 21 ENSDLAG00005019193 ENSDLAG00005034459 ENSDLAG00005024037 ENSDLAG00005030191 ENSDLAG00005024053 ENSDLAG00005031706 ##22 ENSDLAG00005031603 ENSDLAG00005024432 ENSDLAG00005034086 ENSDLAG00005030043 ##22 ENSDLAG00005024075 ENSDLAG00005033377 ENSDLAG00005027805 ENSDLAG00005002383 #22 ENSDLAG00005027964 #25 ENSDLAG00005028641 ##22 ENSDLAG00005030229 ENSDLAG00005033915 ENSDLAG00005024441 ENSDLAG00005024452 ENSDLAG00005024524 ENSDLAG00005002283 ENSDLAG00005034745 ENSDLAG00005015840 ENSDLAG00005013141 ENSDLAG00005020571 ENSDLAG00005029541 ENSDLAG00005005891 ENSDLAG00005029231 ENSDLAG00005003089 ENSDLAG00005031171 ##22 Percomorphaceae_D ANCESTRAL SPECIES 1 ENSGT00390000006416 ENSGT00530000063301.a.a.c.b ENSGT00940000158951.f ENSGT00940000165079.b ENSGT00390000005602 ENSGT00940000173491 ENSGT00940000156584.e.b ENSGT00940000164625.o.a ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00940000165576.a.b ENSGT00940000159997 ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785 ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00390000003628.a.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT00940000155223.a.a ENSGT01030000234606.a.b.i.a ENSGT00390000018541 ENSGT00390000010157.b ENSGT00940000160377 ENSGT01100000263525.a.b.a.b ENSGT00390000005830 Anabantaria ANCESTRAL SPECIES 6 ENSGT00530000064085.d ENSGT00390000008812.b.b.b ENSGT00390000006416 ENSGT00530000063301.a.a.c.b ENSGT00940000158951.f ENSGT00940000165079.b ENSGT00390000005602 ENSGT00940000156584.e.b ENSGT00940000164625.o.a ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00940000165576.a.b ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785 ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00940000164286.j.b.a.a.a ENSGT00390000003628.a.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT00940000167671 ENSGT01030000234606.a.b.i.a ENSGT00390000018541 ENSGT00390000010157.b ENSGT00950000183150.a.a.a.d ENSGT00390000016335.g Anabantoidei ANCESTRAL SPECIES 25 ENSGT00530000064085.d ENSGT00390000008812.b.b.b ENSGT00390000006416 ENSGT00530000063301.a.a.c.b ENSGT00940000158951.f ENSGT00940000165079.b ENSGT00390000005602 ENSGT00940000156584.e.b ENSGT00940000164625.o.a ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00940000165576.a.b ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785 ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00940000164286.j.b.a.a.a ENSGT00390000003628.a.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT00940000167671 ENSGT01030000234606.a.b.i.a ENSGT00390000018541 ENSGT00390000010157.b ENSGT00950000183150.a.a.a.d ENSGT00390000016335.g Climbing perch MODERN SPECIES 21 ENSATEG00000011989 ENSATEG00000011929 ENSATEG00000011914 ENSATEG00000011897 ENSATEG00000011890 ENSATEG00000011778 ENSATEG00000029173 ENSATEG00000011696 ENSATEG00000011672 ENSATEG00000011659 ENSATEG00000011624 cyb561 (ENSATEG00000011593) ENSATEG00000011514 ENSATEG00000011486 ENSATEG00000011472 ENSATEG00000030018 ##22 ENSATEG00000026298 ENSATEG00000011392 ENSATEG00000025727 ##22 ENSATEG00000025949 ##22 ENSATEG00000010928 ENSATEG00000029972 ENSATEG00000030080 #25 ENSATEG00000029291 ENSATEG00000025514 ENSATEG00000025452 #25 ENSATEG00000028299 ENSATEG00000010685 ENSATEG00000010638 ENSATEG00000010394 ENSATEG00000010369 Carangaria ANCESTRAL SPECIES 4 ENSGT00530000063301.a.a.c.b ENSGT00940000158951.f ENSGT00940000165079.b ENSGT00390000005602 ENSGT00940000173491 ENSGT00940000156584.e.b ENSGT00940000164625.o.a ENSGT00980000198722 ENSGT00940000164625.o.b.a.b ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00940000159997 ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785 ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00390000003628.a.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT00940000155223.a.a ENSGT01030000234606.a.b.i.a ENSGT00390000018541 ENSGT00390000010157.b ENSGT00940000160377 ENSGT01100000263525.a.b.a.b ENSGT00390000005830 Carangaria_A ANCESTRAL SPECIES 12 ENSGT00390000008812.b.b.b ENSGT00390000006416 ENSGT00530000063301.a.a.c.b ENSGT00940000158951.f ENSGT00940000165079.b ENSGT00390000005602 ENSGT00940000177154 ENSGT00970000198135 ENSGT00940000156584.e.b ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00940000159997 ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785 ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00390000003628.a.b ENSGT00940000166711 ENSGT00390000004690.a.a Seriola ANCESTRAL SPECIES 23 ENSGT00940000159512 ENSGT00940000157381.d ENSGT00940000164445.g.a ENSGT00390000005602 ENSGT00940000177154 ENSGT00940000173491 ENSGT00940000156584.e.b ENSGT00940000164625.o.a ENSGT00980000198722 ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00940000159997 ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785 ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00940000164286.j.b.a.a.a ENSGT00390000003628.a.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT00940000165079.b ENSGT00940000158951.f ENSGT00530000063301.a.a.c.b ENSGT00390000006416 ENSGT00390000008812.b.b.b ENSGT00530000064085.d Greater amberjack MODERN SPECIES 50 kat8 (ENSSDUG00000005784) xylt1 (ENSSDUG00000005816) ENSSDUG00000005873 ENSSDUG00000006287 nags (ENSSDUG00000006302) ENSSDUG00000006313 coa3b (ENSSDUG00000006324) ENSSDUG00000006335 ENSSDUG00000006352 pex12 (ENSSDUG00000006364) HDAC5 (ENSSDUG00000006379) cyb561 (ENSSDUG00000006425) TANC2 (ENSSDUG00000006452) ENSSDUG00000006484 RARA (ENSSDUG00000006498) ENSSDUG00000006537 ##22 ENSSDUG00000006550 ENSSDUG00000006557 pyya (ENSSDUG00000006560) mpp2a (ENSSDUG00000006569) ENSSDUG00000006592 ENSSDUG00000006614 smarce1 (ENSSDUG00000006627) ENSSDUG00000006658 rpl23 (ENSSDUG00000006698) ENSSDUG00000006740 ENSSDUG00000006757 DLX3 (ENSSDUG00000006765) PSMD11 (ENSSDUG00000006787) rpain (ENSSDUG00000006821) cdk5r1a (ENSSDUG00000006827) Yellowtail amberjack MODERN SPECIES 2955 xylt1 (ENSSLDG00000012358) ENSSLDG00000012388 nags (ENSSLDG00000012402) ENSSLDG00000012421 coa3b (ENSSLDG00000012428) ENSSLDG00000012463 ENSSLDG00000012554 ENSSLDG00000012581 ENSSLDG00000012593 pex12 (ENSSLDG00000012631) ENSSLDG00000012712 HDAC5 (ENSSLDG00000012743) cyb561 (ENSSLDG00000012777) TANC2 (ENSSLDG00000012929) RARA (ENSSLDG00000013339) ENSSLDG00000013369 ##22 ENSSLDG00000013393 ENSSLDG00000013406 pyya (ENSSLDG00000013426) mpp2a (ENSSLDG00000013449) ENSSLDG00000013486 ENSSLDG00000013513 smarce1 (ENSSLDG00000013531) ENSSLDG00000013555 rpl23 (ENSSLDG00000013573) ENSSLDG00000013635 ENSSLDG00000013653 ENSSLDG00000013663 DLX3 (ENSSLDG00000013683) PSMD11 (ENSSLDG00000013717) rpain (ENSSLDG00000013756) Ovalentaria ANCESTRAL SPECIES 1 ENSGT00940000158951.f ENSGT00940000165079.b ENSGT00390000005602 ENSGT01100000263513.a.a.b.b.b.b.b.a.b.b ENSGT00390000006679.b ENSGT00940000173491 ENSGT00940000177154 ENSGT00940000156584.e.b ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00950000182995.e.a.b ENSGT00940000165576.a.b ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785.j ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00390000003628.a.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT00940000155223.a.a ENSGT01030000234606.a.b.i.a ENSGT01030000234606.a.b.i.b ENSGT00390000018541 ENSGT00390000010157.b ENSGT00940000160377 ENSGT01100000263525.a.b.a.b Ovalentaria_B ANCESTRAL SPECIES ENSGT00940000165079.b ENSGT00390000005602 ENSGT01100000263513.a.a.b.b.b.b.b.a.b.b ENSGT00390000006679.b.n ENSGT00940000173491 ENSGT00940000177154 ENSGT00940000156584.e.b ENSGT00940000164625.o.a ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00950000182995.e.a.b ENSGT00940000165576.a.b ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785.j ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00390000003628.a.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT00940000155223.a.a ENSGT01030000234606.a.b.i.a ENSGT01030000234606.a.b.i.b ENSGT00390000018541 ENSGT00390000010157.b ENSGT00940000160377 ENSGT01100000263525.a.b.a.b Cichlidae ANCESTRAL SPECIES 19 ENSGT00390000005602 ENSGT00390000006679.b.m ENSGT00970000198135 ENSGT00940000156584.e.b ENSGT00980000198722.b ENSGT00940000166007.c.a.a.b ENSGT00940000174883.h ENSGT00940000177241 ENSGT00940000164625.o.a ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00950000182995.e.a.b ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785.j.d ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00390000003628.a.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT01090000260162.f ENSGT01100000263473.a.b.g.a.a.b.a.a.b ENSGT00940000155223.a.a ENSGT01030000234606.a.b.i.a ENSGT01030000234606.a.b.i.b ENSGT00390000018541 ENSGT00390000010157.b Pseudocrenilabrinae ANCESTRAL SPECIES 1 ENSGT00390000006416 ENSGT00530000063301.a.a.c.b ENSGT00940000158951.f ENSGT00940000165079.b ENSGT00390000005602 ENSGT00390000006679.b.m.a ENSGT00940000177154.d ENSGT00940000156584.e.b ENSGT00940000164625.o.a ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00950000182995.e.a.b ENSGT00950000183145.B.a.b.c ##22 ENSGT01030000234785.j.d ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00390000003628.a.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT01090000260162.f ENSGT01100000263473.a.b.g.a.a.b.a.a.b ENSGT00940000155223.a.a ENSGT01030000234606.a.b.i.a ENSGT01030000234606.a.b.i.b ENSGT00390000018541 ENSGT00390000010157.b Nile tilapia DUPLICATION Nile tilapia MODERN SPECIES 16 ENSONIG00000006292 ENSONIG00000006283 ENSONIG00000038224 ENSONIG00000039072 smarce1 (ENSONIG00000006293) ENSONIG00000006299 mpp2a (ENSONIG00000006302) pyya (ENSONIG00000038015) ENSONIG00000006308 ENSONIG00000031552 ##22 ENSONIG00000027337 ##22 ENSONIG00000031965 rarab (ENSONIG00000006314) ENSONIG00000034800 ENSONIG00000036608 ENSONIG00000030584 ##22 ENSONIG00000037795 ENSONIG00000034707 ENSONIG00000037062 ENSONIG00000030607 ##22 ENSONIG00000039250 ENSONIG00000030523 ENSONIG00000040970 ENSONIG00000032352 ENSONIG00000006333 ENSONIG00000006334 ENSONIG00000034573 TANC2 (ENSONIG00000006337) cyb561 (ENSONIG00000006341) HDAC5 (ENSONIG00000006345) pex12 (ENSONIG00000006361) Nile tilapia MODERN SPECIES 16 ENSONIG00000006333 ENSONIG00000032352 ENSONIG00000040970 ENSONIG00000030523 ENSONIG00000039250 ENSONIG00000030607 ##22 ENSONIG00000037062 ENSONIG00000034707 ENSONIG00000037795 ENSONIG00000030584 ##22 ENSONIG00000036608 ENSONIG00000034800 rarab (ENSONIG00000006314) ENSONIG00000031965 ENSONIG00000027337 ##22 ENSONIG00000031552 ##22 ENSONIG00000006308 pyya (ENSONIG00000038015) mpp2a (ENSONIG00000006302) ENSONIG00000006299 smarce1 (ENSONIG00000006293) ENSONIG00000039072 ENSONIG00000038224 ENSONIG00000006283 ENSONIG00000006292 ENSONIG00000030171 ENSONIG00000028252 CA10 (ENSONIG00000006280) ENSONIG00000006275 ENSONIG00000006272 timm29 (ENSONIG00000006271) Pseudocrenilabrinae_A DUPLICATION Pseudocrenilabrinae_A ANCESTRAL SPECIES 38 ENSGT00940000165079.b ENSGT00390000005602 ENSGT00390000006679.b.m.a ENSGT00390000006679.b.n.a.b ENSGT00390000006679.b.n.b.a ENSGT00940000173491 ENSGT00390000006679.b.n.a.a ENSGT00940000156584.e.b ENSGT00940000164625.o.a ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00950000182995.e.a.b ENSGT00950000183145.B.a.b.c.e ##22 ENSGT01030000234785.j.d ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00390000003628.a.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT01090000260162.f ENSGT01100000263473.a.b.g.a.a.a.b.c.a ENSGT00940000155223.a.a ENSGT01030000234606.a.b.i.a ENSGT01030000234606.a.b.i.b ENSGT00390000018541 ENSGT00390000010157.b Haplochromini ANCESTRAL SPECIES 56 ENSGT00950000183145.B.a.b.c.e ##22 ENSGT01030000234785.j.d ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00390000003628.a.b ENSGT01100000263473.a.b.g.a.a.a.b.c.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT01100000263473.a.b.g.a.a.a.b.c.a ENSGT00940000155223.a.a ENSGT01030000234606.a.b.i.a ENSGT01030000234606.a.b.i.b ENSGT00390000018541 ENSGT00390000010157.b Burton s mouthbrooder MODERN SPECIES 1022 ENSHBUG00000010162 ##22 ENSHBUG00000010149 ENSHBUG00000010135 pyya (ENSHBUG00000010125) mpp2a (ENSHBUG00000010101) ENSHBUG00000010021 smarce1 (ENSHBUG00000010012) ENSHBUG00000009999 ENSHBUG00000009993 rpl23 (ENSHBUG00000009987) ENSHBUG00000009973 Pseudocrenilabrinae_A ANCESTRAL SPECIES 284 ENSGT00950000183145.B.a.b.c.f ##22 ENSGT01030000234785.i.a Haplochromini ANCESTRAL SPECIES 186 ENSGT00940000165576.a.b ENSGT00950000183145.B.a.b.c.f ##22 ENSGT01030000234785.i.a Haplochromini_A ANCESTRAL SPECIES 43 ENSGT01030000234606.a.b.i.a ENSGT00940000155223.a.a ENSGT01100000263473.a.b.g.a.a.a.b.c.a ENSGT00390000004690.a.a ENSGT00940000166711 ENSGT01100000263473.a.b.g.a.a.a.b.c.b ENSGT00390000003628.a.b ENSGT00940000177763 ENSGT00940000163871.b ENSGT00940000155348.B.c ENSGT00940000160643.i ENSGT00940000168246 ENSGT00950000183145.A.b.a.t ##22 ENSGT01030000234785.j.d ENSGT00940000165576.a.b ENSGT00950000183145.B.a.b.c.f ##22 ENSGT01030000234785.i.a ENSGT00940000159997 ENSGT01030000234785.j.c.b ENSGT01030000234785.j.c.a.a ENSGT00950000182995.e.a.b ENSGT00940000156447.a.b ENSGT00950000183197.a ENSGT00940000160534 ENSGT00390000016209 ENSGT00940000155311.A.a ENSGT00940000164625.o.a ENSGT00940000174883.h ENSGT00940000177241 ENSGT01060000249103 ENSGT00940000156584.e.b Haplochromini_B ANCESTRAL SPECIES 31 ENSGT00390000018541 ENSGT01030000234606.a.b.i.b ENSGT01030000234606.a.b.i.a ENSGT00940000155223.a.a ENSGT01100000263473.a.b.g.a.a.a.b.c.a ENSGT00390000004690.a.a ENSGT00940000166711 ENSGT00390000003628.a.b ENSGT00940000177763 ENSGT00940000163871.b ENSGT00940000155348.B.c ENSGT00940000160643.i ENSGT00940000168246 ENSGT00950000183145.A.b.a.t ##22 ENSGT00940000165576.a.b ENSGT00950000183145.B.a.b.c.f ##22 ENSGT01030000234785.i.a ENSGT01030000234785.j.c.b ENSGT01030000234785.j.c.a.a ENSGT00950000182995.e.a.b ENSGT00940000156447.a.b ENSGT00950000183197.a ENSGT00940000160534 ENSGT00390000016209 ENSGT00940000155311.A.a ENSGT00940000164625.o.a ENSGT00940000174883.h ENSGT00940000177241 ENSGT01060000249103 ENSGT00940000156584.e.b ENSGT00390000006679.b.n.a.a Eastern happy MODERN SPECIES 16 ENSACLG00000005205 ENSACLG00000005212 smarce1 (ENSACLG00000005218) ENSACLG00000005252 ENSACLG00000005263 ENSACLG00000005277 mpp2a (ENSACLG00000005284) pyya (ENSACLG00000005316) ENSACLG00000005326 ENSACLG00000005738 ##22 ENSACLG00000005748 ENSACLG00000005751 ENSACLG00000005762 ENSACLG00000005770 rarab (ENSACLG00000005781) ENSACLG00000005789 ##22 ENSACLG00000005808 ENSACLG00000005817 ENSACLG00000005822 ENSACLG00000005830 ENSACLG00000005854 TANC2 (ENSACLG00000005865) cyb561 (ENSACLG00000005935) HDAC5 (ENSACLG00000005948) pex12 (ENSACLG00000006405) ENSACLG00000006407 ENSACLG00000006409 ENSACLG00000006419 ENSACLG00000006427 ENSACLG00000006438 col1a1a (ENSACLG00000006444) P. nyererei MODERN SPECIES 1225 ENSPNYG00000023751 ##22 Burton s mouthbrooder MODERN SPECIES 846 ENSHBUG00000013241 ENSHBUG00000013249 ##22 Lyretail cichlid MODERN SPECIES 146 ENSNBRG00000000224 ##22 Atherinomorphae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.c ##22 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.c ##22 Aplocheiloidei ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.c ##22 Mangrove rivulus MODERN SPECIES 800 ENSKMAG00000020632 ENSKMAG00000020642 ENSKMAG00000020650 ENSKMAG00000020663 ##22 Cyprinodontoidei ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.c ##22 Poeciliinae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.c ##22 Poecilia ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.c ##22 NAME_6 ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.c ##22 Sailfin molly MODERN SPECIES 3485 ENSPLAG00000011654 ENSPLAG00000011664 ##22 ENSPLAG00000011679 ##22 Guppy MODERN SPECIES 448 DNAH2 (ENSPREG00000014886) KDM6B (ENSPREG00000014835) tmem88b (ENSPREG00000014814) ENSPREG00000014755 tdrd7b (ENSPREG00000014720) dctn1a (ENSPREG00000014551) ENSPREG00000014441 ENSPREG00000014403 ENSPREG00000014393 ENSPREG00000014365 ENSPREG00000014356 ENSPREG00000014342 ENSPREG00000014335 ENSPREG00000014318 ##22 ENSPREG00000014310 ENSPREG00000014301 ##22 cldnd1a (ENSPREG00000014296) ACY3 (ENSPREG00000014281) osbp (ENSPREG00000014254) coro1b (ENSPREG00000014223) ENSPREG00000014209 dtx4a (ENSPREG00000014172) msantd1 (ENSPREG00000014159) ENSPREG00000014146 ENSPREG00000014122 HGFAC (ENSPREG00000014085) DOK7 (ENSPREG00000014070) ADRA2C (ENSPREG00000014061) ENSPREG00000014049 ENSPREG00000014038 CPZ (ENSPREG00000014023) Protacanthopterygii ANCESTRAL SPECIES 625 ENSGT00950000183145.B.a.a.a.a ##22 ENSGT00950000183145.B.a.b.c ##22 Salmoninae ANCESTRAL SPECIES 2178 ENSGT00950000183145.B.a.a.a.a.d ##22 ENSGT00950000183145.B.a.b.c ##22 Huchen MODERN SPECIES 2435 ENSHHUG00000044239 ENSHHUG00000044238 ##22 ENSHHUG00000044237 ##22 ENSHHUG00000044236 ENSHHUG00000044234 ENSHHUG00000044223 ENSHHUG00000044218 STUB1 (ENSHHUG00000044214) JMJD8 (ENSHHUG00000044187) tmem86b (ENSHHUG00000044184) hspbp1 (ENSHHUG00000044172) Salmoninae_a ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.c ##22 Salmo ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.c ##22 River trout MODERN SPECIES ENSSTUG00000000757 ENSSTUG00000000759 ENSSTUG00000000766 OTOP2 (ENSSTUG00000000769) OTOP2 (ENSSTUG00000000774) USH1G (ENSSTUG00000000795) ENSSTUG00000000798 ENSSTUG00000000801 zgc:112148 (ENSSTUG00000000805) ENSSTUG00000000820 ENSSTUG00000000885 KCNJ2 (ENSSTUG00000000888) MAP2K6 (ENSSTUG00000000895) BTBD17 (ENSSTUG00000000901) ENSSTUG00000000904 ENSSTUG00000000906 ##22 ENSSTUG00000000913 trub1 (ENSSTUG00000000925) STUB1 (ENSSTUG00000000932) JMJD8 (ENSSTUG00000000952) ENSSTUG00000000982 tufm (ENSSTUG00000001005) hspbp1 (ENSSTUG00000001032) tmem86b (ENSSTUG00000001038) aspdh (ENSSTUG00000001045) gys1 (ENSSTUG00000001081) ENSSTUG00000001163 pold1 (ENSSTUG00000001221) ENSSTUG00000001509 ENSSTUG00000001524 ENSSTUG00000001525 Otomorpha ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.c ##22 Otophysi ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.c ##22 Cyprinoidei ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.c ##22 Zebrafish MODERN SPECIES 18 ier2a (ENSDARG00000099195) NACC1 (ENSDARG00000099164) ELFN2 (ENSDARG00000110874) sgsm3 (ENSDARG00000019038) gtpbp1 (ENSDARG00000053467) ENSDARG00000053460 rpl23 (ENSDARG00000053457) ccdc103 (ENSDARG00000053455) abi3a (ENSDARG00000060072) ENSDARG00000104213 mpp2a (ENSDARG00000053453) pyya (ENSDARG00000053449) hspb9 (ENSDARG00000078674) rarab (ENSDARG00000034893) ENSDARG00000101017 ##22 ENSDARG00000111315 ##22 casp6b.2 (ENSDARG00000070368) casp6a (ENSDARG00000093405) casp6b.1 (ENSDARG00000025608) ENSDARG00000078772 aoc2 (ENSDARG00000014646) G6PC1 (ENSDARG00000014967) kat7a (ENSDARG00000070371) zgc:113090 (ENSDARG00000053260) rusf1 (ENSDARG00000059919) ENSDARG00000098191 ENSDARG00000089232 cd2bp2 (ENSDARG00000027357) pheta2 (ENSDARG00000110325) mylpfa (ENSDARG00000053254) tbc1d10b (ENSDARG00000078604) Clupeocephala ANCESTRAL SPECIES 990 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 Otomorpha ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d ##22 Otophysi ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d ##22 Characiphysae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d ##22 Characiphysae_b ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d ##22 Characoidei ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d ##22 Red-bellied piranha DUPLICATION Red-bellied piranha MODERN SPECIES 1372 ENSPNAG00000007286 ##22 Red-bellied piranha MODERN SPECIES 168 ENSPNAG00000029745 cacng2a (ENSPNAG00000029725) ENSPNAG00000029716 rpl23 (ENSPNAG00000029713) ccdc103 (ENSPNAG00000029695) FAM187A (ENSPNAG00000029682) abi3a (ENSPNAG00000029672) ENSPNAG00000005069 ENSPNAG00000006581 mpp2a (ENSPNAG00000029604) pyya (ENSPNAG00000006633) hspb9 (ENSPNAG00000004614) cldni (ENSPNAG00000029474) rarab (ENSPNAG00000029457) ENSPNAG00000029427 ENSPNAG00000029392 ##22 ENSPNAG00000029384 Euteleosteomorpha ANCESTRAL SPECIES 754 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d ##22 Salmoninae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d ##22 Huchen MODERN SPECIES 6550 ENSHHUG00000005024 ##22 ENSHHUG00000005014 ##22 Acanthomorphata ANCESTRAL SPECIES 719 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 Euacanthomorphacea ANCESTRAL SPECIES 455 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 Percomorphaceae ANCESTRAL SPECIES 7 ENSGT00940000156846 ENSGT00390000012992 ENSGT00950000183133.d ENSGT01030000234629.B ENSGT00940000158954 ENSGT00940000164475 ENSGT00940000165576.a.b ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00390000007688.b ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 ENSGT00940000162108 #25 ENSGT00510000050141.a ENSGT00950000182846.a.a.a.a.b ENSGT00940000160260 ENSGT00390000001958 ENSGT00940000158169.b ENSGT00940000157663 ENSGT00940000154679 ENSGT00950000183011.d.c ENSGT00940000158399 ENSGT00940000153567.b.b ENSGT00950000182998.C.a.k ENSGT00950000183146.a.b.b ENSGT00940000159736.a ENSGT01030000234637.a.a.a.a Percomorphaceae_B ANCESTRAL SPECIES 6 ENSGT00730000114829 ENSGT00950000182805.a.a.a.a.b ENSGT00940000160409 ENSGT00940000156846 ENSGT00390000012992 ENSGT00950000183133.d ENSGT01030000234629.B ENSGT00940000158954 ENSGT00940000164475 ENSGT00940000163299.B.b.b.g.b ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 ENSGT00940000162108 #25 ENSGT00510000050141.a ENSGT00950000182846.a.a.a.a.b ENSGT00940000160260 ENSGT00390000001958 ENSGT00940000158169.b ENSGT00940000157663 ENSGT00940000154679 ENSGT00950000183011.d.c ENSGT00940000158399 ENSGT00940000153567.b.b ENSGT00950000182998.C.a.k ENSGT00950000183146.a.b.b ENSGT00940000159736.a ENSGT01030000234637.a.a.a.a Percomorphaceae_C ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d ##22 Percomorphaceae_D ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d ##22 Anabantaria ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d ##22 Anabantoidei ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d ##22 Climbing perch MODERN SPECIES 21 ENSATEG00000010264 ENSATEG00000010281 ENSATEG00000025703 ENSATEG00000010285 ENSATEG00000010369 ENSATEG00000010394 ENSATEG00000010638 ENSATEG00000010685 ENSATEG00000028299 ENSATEG00000025452 #25 ENSATEG00000025514 ENSATEG00000029291 ENSATEG00000030080 #25 ENSATEG00000029972 ENSATEG00000010928 ENSATEG00000025949 ##22 ENSATEG00000025727 ##22 ENSATEG00000011392 ENSATEG00000026298 ENSATEG00000030018 ##22 ENSATEG00000011472 ENSATEG00000011486 ENSATEG00000011514 cyb561 (ENSATEG00000011593) ENSATEG00000011624 ENSATEG00000011659 ENSATEG00000011672 ENSATEG00000011696 ENSATEG00000029173 ENSATEG00000011778 ENSATEG00000011890 Eupercaria ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d ##22 Tetraodontidae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d ##22 Fugu MODERN SPECIES 8 NOTUM (ENSTRUG00000023602) aspscr1 (ENSTRUG00000012353) ENSTRUG00000012323 ENSTRUG00000012095 MAFG (ENSTRUG00000026437) ENSTRUG00000026592 SIRT7 (ENSTRUG00000011956) pcyt2 (ENSTRUG00000011781) gnav1 (ENSTRUG00000011603) npb (ENSTRUG00000011590) sgsh (ENSTRUG00000011472) slc26a11 (ENSTRUG00000011404) ENSTRUG00000021974 ##22 ENSTRUG00000011378 ##22 ENSTRUG00000028310 ENSTRUG00000027444 ##22 ENSTRUG00000023370 nanos3 (ENSTRUG00000027071) ENSTRUG00000019953 ENSTRUG00000011003 mri1 (ENSTRUG00000010929) c17h19orf53 (ENSTRUG00000025986) ENSTRUG00000020299 ENSTRUG00000010552 khsrp (ENSTRUG00000026489) RFX1 (ENSTRUG00000010058) DCAF15 (ENSTRUG00000010245) TNPO2 (ENSTRUG00000009453) ENSTRUG00000024458 NTHL1 (ENSTRUG00000009279) TSC2 (ENSTRUG00000008958) Eupecaria_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d ##22 Ballan wrasse DUPLICATION Ballan wrasse DUPLICATION Ballan wrasse MODERN SPECIES 1789 ENSLBEG00000022095 ##22 ENSLBEG00000022110 Ballan wrasse MODERN SPECIES 338 ENSLBEG00000004335 ##22 ENSLBEG00000004316 ##22 ENSLBEG00000004291 ENSLBEG00000004278 ENSLBEG00000004260 ENSLBEG00000004251 pyya (ENSLBEG00000004232) mpp2a (ENSLBEG00000004149) ENSLBEG00000004114 ENSLBEG00000004076 fbxl16 (ENSLBEG00000004049) ENSLBEG00000004021 ENSLBEG00000003989 smg1 (ENSLBEG00000003775) hao1 (ENSLBEG00000003692) ENSLBEG00000003682 JUP (ENSLBEG00000003603) Ballan wrasse MODERN SPECIES 338 ENSLBEG00000004335 ##22 ENSLBEG00000004316 ##22 ENSLBEG00000004291 ENSLBEG00000004278 ENSLBEG00000004260 ENSLBEG00000004251 pyya (ENSLBEG00000004232) mpp2a (ENSLBEG00000004149) ENSLBEG00000004114 ENSLBEG00000004076 fbxl16 (ENSLBEG00000004049) ENSLBEG00000004021 ENSLBEG00000003989 smg1 (ENSLBEG00000003775) hao1 (ENSLBEG00000003692) ENSLBEG00000003682 Eupecaria_B ANCESTRAL SPECIES 205 ENSGT00940000159997 ENSGT00950000183145.B.a.b.d ##22 Eupecaria_C ANCESTRAL SPECIES 206 ENSGT00940000159997 ENSGT00950000183145.B.a.b.d ##22 Eupercaria_incertae_sedis ANCESTRAL SPECIES 213 ENSGT00940000159997 ENSGT00950000183145.B.a.b.d ##22 Large yellow croaker MODERN SPECIES 483 ENSLCRG00005014300 aldh16a1 (ENSLCRG00005014294) fthl27 (ENSLCRG00005014290) syt5a (ENSLCRG00005014287) ENSLCRG00005014286 marveld2b (ENSLCRG00005014285) sdf2l1 (ENSLCRG00005014283) oclnb (ENSLCRG00005014280) gtf2h2 (ENSLCRG00005014279) dhfr (ENSLCRG00005014277) ENSLCRG00005014275 ENSLCRG00005014274 ENSLCRG00005014272 ENSLCRG00005014271 RARA (ENSLCRG00005014158) ENSLCRG00005014148 ##22 ENSLCRG00005014146 ENSLCRG00005014126 #25 ENSLCRG00005014123 pyya (ENSLCRG00005014120) mpp2a (ENSLCRG00005013419) ENSLCRG00005013398 ENSLCRG00005013395 ENSLCRG00005013393 ENSLCRG00005013391 ENSLCRG00005013388 ENSLCRG00005013387 smarce1 (ENSLCRG00005013365) ENSLCRG00005013360 rpl23 (ENSLCRG00005013347) CA10 (ENSLCRG00005013338) Perciformes ANCESTRAL SPECIES 208 ENSGT00940000159997 ENSGT00950000183145.B.a.b.d ##22 Perciformes_a ANCESTRAL SPECIES 298 ENSGT00940000159997 ENSGT00950000183145.B.a.b.d ##22 Channel bull blenny MODERN SPECIES 22 DLX3 (ENSCGOG00000017774) ENSCGOG00000017778 nags (ENSCGOG00000017779) ENSCGOG00000017783 coa3b (ENSCGOG00000017788) col1a1a (ENSCGOG00000017849) ENSCGOG00000020028 pex12 (ENSCGOG00000020030) HDAC5 (ENSCGOG00000020048) cyb561 (ENSCGOG00000020481) ENSCGOG00000020485 TANC2 (ENSCGOG00000020542) SLC18A2 (ENSCGOG00000021297) ENSCGOG00000021298 RARA (ENSCGOG00000021300) ENSCGOG00000021307 ##22 ENSCGOG00000021308 pyya (ENSCGOG00000021309) mpp2a (ENSCGOG00000021322) ENSCGOG00000021494 ENSCGOG00000021504 ENSCGOG00000021506 smarce1 (ENSCGOG00000021508) ENSCGOG00000021536 rpl23 (ENSCGOG00000021541) CA10 (ENSCGOG00000021567) ENSCGOG00000021577 cln3 (ENSCGOG00000021587) ENSCGOG00000021607 dus1l (ENSCGOG00000021611) slc16a3b (ENSCGOG00000000465) Pike perch MODERN SPECIES 548 ENSSLUG00000007307 ##22 Ovalentaria DUPLICATION Ovalentaria DUPLICATION Ovalentaria ANCESTRAL SPECIES 216 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d.e.a ##22 Atherinomorphae ANCESTRAL SPECIES 237 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d.e.a ##22 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.a ##22 Cyprinodontoidei ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.a ##22 Poeciliinae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.a ##22 Poecilia ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.a ##22 NAME_6 ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.a ##22 Sailfin molly MODERN SPECIES 3928 ENSPLAG00000018561 ENSPLAG00000018577 ##22 Amazon molly MODERN SPECIES 543 ENSPFOG00000021788 nubp1 (ENSPFOG00000017694) emp2 (ENSPFOG00000017680) ENSPFOG00000022550 ENSPFOG00000017619 ENSPFOG00000017655 ##22 ENSPFOG00000022000 GRIN2A (ENSPFOG00000017533) ENSPFOG00000017390 ENSPFOG00000024503 b9d1 (ENSPFOG00000017334) EPN2 (ENSPFOG00000017282) grapa (ENSPFOG00000017271) ENSPFOG00000017268 SPHK1 (ENSPFOG00000017256) Platyfish MODERN SPECIES itpr3 (ENSXMAG00000013373) ENSXMAG00000027329 SULF2 (ENSXMAG00000003257) mrgbp (ENSXMAG00000003291) hm13 (ENSXMAG00000003296) ENSXMAG00000003305 snx21 (ENSXMAG00000003313) ENSXMAG00000003316 ENSXMAG00000003317 edem2 (ENSXMAG00000029629) ENSXMAG00000028440 ENSXMAG00000029059 ENSXMAG00000029701 ENSXMAG00000028679 ENSXMAG00000027647 ENSXMAG00000024715 ##22 ENSXMAG00000027352 ENSXMAG00000021516 CDK16 (ENSXMAG00000003320) abt1 (ENSXMAG00000003341) rad51c (ENSXMAG00000003344) grm6a (ENSXMAG00000003346) tsr2 (ENSXMAG00000024827) SRPK3 (ENSXMAG00000003381) PLXNB3 (ENSXMAG00000003393) abcd1 (ENSXMAG00000003466) ENSXMAG00000024465 ENSXMAG00000021127 ENSXMAG00000003511 ENSXMAG00000021429 ENSXMAG00000025932 Oryzias ANCESTRAL SPECIES 209 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d.e.a ##22 Oryzias_a DUPLICATION Oryzias_a ANCESTRAL SPECIES 261 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d.e.a.a ##22 Chinese medaka MODERN SPECIES 79 ENSOSIG00000000636 ##22 ENSOSIG00000000634 ##22 ENSOSIG00000000632 ##22 Japanese Medaka HdrR MODERN SPECIES 12 rab18a (ENSORLG00000004624) itgb1a (ENSORLG00000004663) nrp1a (ENSORLG00000004717) ENSORLG00000004738 CUL2 (ENSORLG00000004776) CCNY (ENSORLG00000004790) GJD4 (ENSORLG00000024722) fzd8a (ENSORLG00000004795) klf6a (ENSORLG00000026971) PFKP (ENSORLG00000004933) ENSORLG00000028284 ENSORLG00000027308 ENSORLG00000029428 ENSORLG00000026410 ENSORLG00000027470 ENSORLG00000004947 ##22 ENSORLG00000026129 #22 ENSORLG00000029348 ADARB2 (ENSORLG00000027340) wdr37 (ENSORLG00000004980) idi1 (ENSORLG00000004991) cpne3 (ENSORLG00000005092) CPNE3 (ENSORLG00000029296) rmdn1 (ENSORLG00000029876) WWP1 (ENSORLG00000005146) ENSORLG00000025307 snx16 (ENSORLG00000005193) ENSORLG00000005218 adh5 (ENSORLG00000005183) ENSORLG00000024843 ENSORLG00000019355 Oryzias_a ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.a.b ##22 Chinese medaka MODERN SPECIES 79 ENSOSIG00000000636 ##22 ENSOSIG00000000634 ##22 ENSOSIG00000000632 ##22 Oryzias_b ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.a ##22 Javanese ricefish MODERN SPECIES 12 mpp7a (ENSOJAG00000017541) ODAD2 (ENSOJAG00000017301) mkxa (ENSOJAG00000017251) rab18a (ENSOJAG00000017204) itgb1a (ENSOJAG00000016103) nrp1a (ENSOJAG00000015437) ENSOJAG00000015363 ENSOJAG00000015274 CUL2 (ENSOJAG00000015176) CCNY (ENSOJAG00000015111) GJD4 (ENSOJAG00000015095) fzd8a (ENSOJAG00000015080) klf6a (ENSOJAG00000015052) PFKP (ENSOJAG00000011925) ENSOJAG00000011825 ENSOJAG00000011548 ##22 ENSOJAG00000011524 ADARB2 (ENSOJAG00000011416) wdr37 (ENSOJAG00000011131) idi1 (ENSOJAG00000011069) cpne3 (ENSOJAG00000010882) cpne3 (ENSOJAG00000006769) rmdn1 (ENSOJAG00000006157) WWP1 (ENSOJAG00000003634) ENSOJAG00000021778 snx16 (ENSOJAG00000021766) ENSOJAG00000021732 ENSOJAG00000021698 serpinb1l3 (ENSOJAG00000021687) polr2d (ENSOJAG00000021673) serpinb1l3 (ENSOJAG00000021639) Ovalentaria_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.a ##22 Cichlidae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.a ##22 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.a ##22 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.a ##22 Haplochromini ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.a ##22 Haplochromini_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.a ##22 P. nyererei MODERN SPECIES 675 ENSPNYG00000011597 rpl23 (ENSPNYG00000011622) ENSPNYG00000011656 ENSPNYG00000011663 smarce1 (ENSPNYG00000011674) ENSPNYG00000011705 ENSPNYG00000011788 mpp2a (ENSPNYG00000012012) pyya (ENSPNYG00000012056) ENSPNYG00000012139 ENSPNYG00000012154 ##22 ENSPNYG00000012192 ENSPNYG00000012207 ##22 Haplochromini_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.a ##22 Zebra mbuna MODERN SPECIES 120 pyya (ENSMZEG00005027778) ENSMZEG00005027779 ENSMZEG00005027780 ##22 ENSMZEG00005027782 ##22 ENSMZEG00005027786 ENSMZEG00005027788 KLHL10 (ENSMZEG00005027791) ENSMZEG00005027793 ENSMZEG00005027796 Nile tilapia MODERN SPECIES 16 ENSONIG00000006334 ENSONIG00000006333 ENSONIG00000032352 ENSONIG00000040970 ENSONIG00000030523 ENSONIG00000039250 ENSONIG00000030607 ##22 ENSONIG00000037062 ENSONIG00000034707 ENSONIG00000037795 ENSONIG00000030584 ##22 ENSONIG00000036608 ENSONIG00000034800 rarab (ENSONIG00000006314) ENSONIG00000031965 ENSONIG00000027337 ##22 ENSONIG00000031552 ##22 ENSONIG00000006308 pyya (ENSONIG00000038015) mpp2a (ENSONIG00000006302) ENSONIG00000006299 smarce1 (ENSONIG00000006293) ENSONIG00000039072 ENSONIG00000038224 ENSONIG00000006283 ENSONIG00000006292 ENSONIG00000030171 ENSONIG00000028252 CA10 (ENSONIG00000006280) ENSONIG00000006275 ENSONIG00000006272 Midas cichlid MODERN SPECIES 43 rarab (ENSACIG00000011168) ENSACIG00000011415 ##22 ENSACIG00000011424 ##22 ENSACIG00000011440 ENSACIG00000011451 Ovalentaria ANCESTRAL SPECIES 6 ENSGT00940000163056 ENSGT01090000260139 ENSGT00940000155360.A ENSGT00940000157635 ENSGT00390000010057 ENSGT00940000160830 ENSGT00940000153615.a.a.a ENSGT00730000114829 ENSGT00950000182805.a.a.a.a.b ENSGT00940000160409 ENSGT00940000156846 ENSGT00390000012992 ENSGT01030000234629.B ENSGT00940000158954 ENSGT00940000164475 ENSGT00950000183145.B.a.b.d.e.b ##22 ENSGT00940000162108 #25 ENSGT00510000050141.a ENSGT00950000182846.a.a.a.a.b ENSGT00940000160260 ENSGT00390000001958 ENSGT00940000158169.b ENSGT00940000157663 ENSGT00940000154679 ENSGT00950000183011.d.c ENSGT00940000158399 ENSGT00940000153567.b.b ENSGT01000000217803 ENSGT00950000182998.C.a.k ENSGT00950000183146.a.b.b ENSGT00940000159736.a Atherinomorphae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b ##22 Oryzias ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b ##22 Oryzias_b ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b ##22 Indian medaka MODERN SPECIES 14 rab18a (ENSOMEG00000020605) itgb1a (ENSOMEG00000020566) nrp1a (ENSOMEG00000020413) ENSOMEG00000020234 ENSOMEG00000020201 CUL2 (ENSOMEG00000020087) CCNY (ENSOMEG00000019995) GJD4 (ENSOMEG00000019900) fzd8a (ENSOMEG00000019892) klf6a (ENSOMEG00000019878) PFKP (ENSOMEG00000019824) ENSOMEG00000019655 ENSOMEG00000019645 ENSOMEG00000019614 ##22 ENSOMEG00000019574 ENSOMEG00000019559 ##22 ADARB2 (ENSOMEG00000019523) wdr37 (ENSOMEG00000019446) idi1 (ENSOMEG00000019396) cpne3 (ENSOMEG00000019357) cpne3 (ENSOMEG00000000778) rmdn1 (ENSOMEG00000019188) WWP1 (ENSOMEG00000019136) ENSOMEG00000019027 snx16 (ENSOMEG00000019013) ENSOMEG00000018983 ENSOMEG00000018953 polr2d (ENSOMEG00000018915) serpinb1l3 (ENSOMEG00000000497) pigm (ENSOMEG00000018851) ENSOMEG00000018814 Ovalentaria_B ANCESTRAL SPECIES 181 ENSGT00950000183145.B.a.b.d.e.b ##22 ENSGT00940000162108 #25 Cichlidae ANCESTRAL SPECIES 243 ENSGT00950000183145.B.a.b.d.e.b ##22 ENSGT00940000162108 #25 Midas cichlid MODERN SPECIES 207 ENSACIG00000010157 ##22 Pseudocrenilabrinae DUPLICATION Pseudocrenilabrinae DUPLICATION Pseudocrenilabrinae DUPLICATION Pseudocrenilabrinae ANCESTRAL SPECIES 365 ENSGT00950000183145.B.a.b.d.e.b.a.a.a ##22 ENSGT00940000162108.z.b.b.a.a.b #25 Pseudocrenilabrinae_A ANCESTRAL SPECIES 367 ENSGT00950000183145.B.a.b.d.e.b.a.a.a ##22 ENSGT00940000162108.z.b.b.a.a.b #25 Haplochromini ANCESTRAL SPECIES 39 ENSGT00940000159429 ENSGT00940000166278.B.b.b ENSGT00940000164406 ENSGT01060000248564.b.a.b.b.b.a ENSGT00950000182962.a.b.a.c ENSGT01050000244937.a.b.a.a ENSGT00940000163852.c.a.a.e.b ENSGT00940000163160.b.a.a.h.a.b ENSGT00940000163852.c.a.a.e.a.b ENSGT00940000160459 ENSGT01070000253816.a.a.a.d ENSGT00940000153763.a ENSGT00940000178616 ENSGT00940000159479 ENSGT00940000163160.b.a.a.h.a.a.b.a ENSGT00950000183145.B.a.b.d.e.b.a.a.a ##22 ENSGT00940000162108.z.b.b.a.a.b #25 ENSGT00940000154603.B.l.j.h.c ENSGT00940000160940 ENSGT00510000050937 ENSGT00950000183118.A.c.b.a ENSGT01090000260059.a.b.b.a.a.b.b.d.b.a.a ENSGT01090000260059.a.b.b.a.a.b.b.d.b.a.b ENSGT00940000160883.b ENSGT00940000165991 ENSGT00940000164592 ENSGT00940000153284.a.mc.a ENSGT00940000153904.b ENSGT00970000193381.a.a.a.a.a.a.a.b.b.a.a.a.a.a.b.b.b.b ENSGT00950000182963.b.b ENSGT00390000005569 Haplochromini_A DUPLICATION Haplochromini_A ANCESTRAL SPECIES 56 ENSGT00940000159429 ENSGT00940000166278.B.b.b.e.a.a ENSGT00940000164406 ENSGT01060000248564.b.a.b.b.b.a ENSGT00950000182962.a.b.a.c ENSGT01050000244937.a.b.a.a ENSGT00940000163852.c.a.a.e.b ENSGT00940000163160.b.a.a.h.a.b ENSGT00940000163852.c.a.a.e.a.b ENSGT00940000160459 ENSGT01070000253816.a.a.a.d ENSGT00940000153763.a ENSGT00940000178616 ENSGT00940000159479 ENSGT00940000163160.b.a.a.h.a.a.b.a ENSGT00950000183145.B.a.b.d.e.b.a.a.a.a ##22 ENSGT00940000162108.z.b.b.a.a.b #25 ENSGT00940000154603.B.l.j.h.c ENSGT00940000160940 ENSGT00510000050937 ENSGT00950000183118.A.c.b.a ENSGT01090000260059.a.b.b.a.a.b.b.d.b.a.a ENSGT01090000260059.a.b.b.a.a.b.b.d.b.a.b ENSGT00940000160883.b ENSGT00940000165991 ENSGT00940000164592 ENSGT00940000153284.a.mc.a ENSGT00940000153904.b ENSGT00970000193381.a.a.a.a.a.a.a.b.b.a.a.a.a.a.b.b.b.b ENSGT00950000182963.b.b ENSGT00390000005569 Haplochromini_B DUPLICATION Haplochromini_B ANCESTRAL SPECIES 65 ENSGT00940000158132.m.a.b ENSGT00940000165121.b ENSGT01060000248575.D.c.b.b.a.k.a.a.a.a.a.a.a.a ENSGT00950000183068.a.a.a.b ENSGT00940000159429 ENSGT00940000164406 ENSGT01060000248564.b.a.b.b.b.a ENSGT00950000182962.a.b.a.c ENSGT01050000244937.a.b.a.a ENSGT00940000163852.c.a.a.e.b ENSGT00940000163160.b.a.a.h.a.b ENSGT00940000163852.c.a.a.e.a.b ENSGT00940000160459 ENSGT01070000253816.a.a.a.d ENSGT00940000153763.a ENSGT00950000183145.B.a.b.d.e.b.a.a.a.a.a ##22 ENSGT00940000162108.z.b.b.a.a.b #25 ENSGT00940000154603.B.l.j.h.c ENSGT00940000154603.B.l.j.h.d ENSGT00950000183145.B.a.b.d.e.b.a.a.a.b ##22 ENSGT00950000183145.B.a.b.d.e.b.a.a.a.a.b ##22 ENSGT00940000160940 ENSGT00510000050937 ENSGT00950000183118.A.c.b.a ENSGT01090000260059.a.b.b.a.a.b.b.d.b.a.a ENSGT01090000260059.a.b.b.a.a.b.b.d.b.a.b ENSGT00940000160883.b ENSGT00940000165991 ENSGT00940000164592 ENSGT00940000153284.a.mc.a ENSGT00940000153904.b Eastern happy MODERN SPECIES 15 ENSACLG00000022115 zgc:109889 (ENSACLG00000022099) htr2cl1 (ENSACLG00000022071) ENSACLG00000022022 ENSACLG00000021371 ENSACLG00000020727 ccnb3 (ENSACLG00000020564) tnfsf10l (ENSACLG00000020528) CLCN5 (ENSACLG00000020445) ENSACLG00000020431 ENSACLG00000020421 ENSACLG00000020386 ENSACLG00000020377 ENSACLG00000020362 ENSACLG00000020344 ##22 ENSACLG00000020313 ##22 ENSACLG00000020284 #25 ENSACLG00000020273 ENSACLG00000020218 ENSACLG00000020211 ENSACLG00000020187 ##22 bmp15 (ENSACLG00000020179) leap2 (ENSACLG00000020172) PHKA1 (ENSACLG00000019567) ENSACLG00000019524 ENSACLG00000019515 ENSACLG00000019505 gc2 (ENSACLG00000019399) rasl11a (ENSACLG00000019293) ENSACLG00000019245 arhgap36 (ENSACLG00000019189) Zebra mbuna MODERN SPECIES 1106 zgc:109889 (ENSMZEG00005020270) htr2cl1 (ENSMZEG00005020265) ENSMZEG00005020206 ENSMZEG00005020176 ENSMZEG00005020174 ENSMZEG00005020170 ENSMZEG00005020168 ccnb3 (ENSMZEG00005020161) tnfsf10l (ENSMZEG00005020154) CLCN5 (ENSMZEG00005020148) ENSMZEG00005020144 ENSMZEG00005020137 ENSMZEG00005020133 ENSMZEG00005020130 ENSMZEG00005020125 ENSMZEG00005020116 ##22 ENSMZEG00005020110 #25 ENSMZEG00005020104 ENSMZEG00005020101 ENSMZEG00005020094 ##22 ENSMZEG00005020086 ##22 ENSMZEG00005020075 bmp15 (ENSMZEG00005020073) leap2 (ENSMZEG00005020070) PHKA1 (ENSMZEG00005020060) ENSMZEG00005020056 ENSMZEG00005020055 ENSMZEG00005020052 ENSMZEG00005020047 gc2 (ENSMZEG00005020035) rasl11a (ENSMZEG00005020026) Haplochromini_B ANCESTRAL SPECIES 65 ENSGT00940000157843 ENSGT00530000063624.B ENSGT00390000005569 ENSGT00950000182963.b.b ENSGT00970000193381.a.a.a.a.a.a.a.b.b.a.a.a.a.a.b.b.b.b ENSGT00940000153904.b ENSGT00940000153284.a.mc.a ENSGT00940000164592 ENSGT00940000165991 ENSGT00940000160883.b ENSGT01090000260059.a.b.b.a.a.b.b.d.b.a.b ENSGT01090000260059.a.b.b.a.a.b.b.d.b.a.a ENSGT00950000183118.A.c.b.a ENSGT00510000050937 ENSGT00940000160940 ENSGT00950000183145.B.a.b.d.e.b.a.a.a.a.b ##22 ENSGT00950000183145.B.a.b.d.e.b.a.a.a.b ##22 ENSGT00940000154603.B.l.j.h.d ENSGT00940000154603.B.l.j.h.c ENSGT00940000162108.z.b.b.a.a.b #25 ENSGT00950000183145.B.a.b.d.e.b.a.a.a.a.a ##22 ENSGT00940000153763.a ENSGT01070000253816.a.a.a.d ENSGT00940000160459 ENSGT00940000163852.c.a.a.e.a.b ENSGT00940000163160.b.a.a.h.a.b ENSGT00940000163852.c.a.a.e.b ENSGT01050000244937.a.b.a.a ENSGT00950000182962.a.b.a.c ENSGT01060000248564.b.a.b.b.b.a ENSGT00940000164406 Eastern happy MODERN SPECIES 15 hdac8 (ENSACLG00000018919) cited1 (ENSACLG00000019034) rps4x (ENSACLG00000019047) ENSACLG00000019148 ENSACLG00000019185 arhgap36 (ENSACLG00000019189) ENSACLG00000019245 rasl11a (ENSACLG00000019293) gc2 (ENSACLG00000019399) ENSACLG00000019505 ENSACLG00000019515 ENSACLG00000019524 PHKA1 (ENSACLG00000019567) leap2 (ENSACLG00000020172) bmp15 (ENSACLG00000020179) ENSACLG00000020187 ##22 ENSACLG00000020211 ENSACLG00000020218 ENSACLG00000020273 ENSACLG00000020284 #25 ENSACLG00000020313 ##22 ENSACLG00000020344 ##22 ENSACLG00000020362 ENSACLG00000020377 ENSACLG00000020386 ENSACLG00000020421 ENSACLG00000020431 CLCN5 (ENSACLG00000020445) tnfsf10l (ENSACLG00000020528) ccnb3 (ENSACLG00000020564) ENSACLG00000020727 Zebra mbuna MODERN SPECIES 1106 ENSMZEG00005019984 ENSMZEG00005019996 arhgap36 (ENSMZEG00005020002) ENSMZEG00005020018 rasl11a (ENSMZEG00005020026) gc2 (ENSMZEG00005020035) ENSMZEG00005020047 ENSMZEG00005020052 ENSMZEG00005020055 ENSMZEG00005020056 PHKA1 (ENSMZEG00005020060) leap2 (ENSMZEG00005020070) bmp15 (ENSMZEG00005020073) ENSMZEG00005020075 ENSMZEG00005020086 ##22 ENSMZEG00005020094 ##22 ENSMZEG00005020101 ENSMZEG00005020104 ENSMZEG00005020110 #25 ENSMZEG00005020116 ##22 ENSMZEG00005020125 ENSMZEG00005020130 ENSMZEG00005020133 ENSMZEG00005020137 ENSMZEG00005020144 CLCN5 (ENSMZEG00005020148) tnfsf10l (ENSMZEG00005020154) ccnb3 (ENSMZEG00005020161) ENSMZEG00005020168 ENSMZEG00005020170 ENSMZEG00005020174 Haplochromini_A ANCESTRAL SPECIES 169 ENSGT00950000183145.B.a.b.d.e.b.a.a.a.b ##22 ENSGT00940000154603.B.l.j.h.d ENSGT00940000161228 P. nyererei MODERN SPECIES 1050 ENSPNYG00000021035 ##22 Haplochromini_B ANCESTRAL SPECIES 65 ENSGT00530000063624.B ENSGT00390000005569 ENSGT00950000182963.b.b ENSGT00970000193381.a.a.a.a.a.a.a.b.b.a.a.a.a.a.b.b.b.b ENSGT00940000153904.b ENSGT00940000153284.a.mc.a ENSGT00940000164592 ENSGT00940000165991 ENSGT00940000160883.b ENSGT01090000260059.a.b.b.a.a.b.b.d.b.a.b ENSGT01090000260059.a.b.b.a.a.b.b.d.b.a.a ENSGT00950000183118.A.c.b.a ENSGT00510000050937 ENSGT00940000160940 ENSGT00950000183145.B.a.b.d.e.b.a.a.a.a.b ##22 ENSGT00950000183145.B.a.b.d.e.b.a.a.a.b ##22 ENSGT00940000154603.B.l.j.h.d ENSGT00940000154603.B.l.j.h.c ENSGT00940000162108.z.b.b.a.a.b #25 ENSGT00950000183145.B.a.b.d.e.b.a.a.a.a.a ##22 ENSGT00940000153763.a ENSGT01070000253816.a.a.a.d ENSGT00940000160459 ENSGT00940000163852.c.a.a.e.a.b ENSGT00940000163160.b.a.a.h.a.b ENSGT00940000163852.c.a.a.e.b ENSGT01050000244937.a.b.a.a ENSGT00950000182962.a.b.a.c ENSGT01060000248564.b.a.b.b.b.a ENSGT00940000164406 ENSGT00940000159429 Eastern happy MODERN SPECIES 15 ENSACLG00000022119 ENSACLG00000022115 zgc:109889 (ENSACLG00000022099) htr2cl1 (ENSACLG00000022071) ENSACLG00000022022 ENSACLG00000021371 ENSACLG00000020727 ccnb3 (ENSACLG00000020564) tnfsf10l (ENSACLG00000020528) CLCN5 (ENSACLG00000020445) ENSACLG00000020431 ENSACLG00000020421 ENSACLG00000020386 ENSACLG00000020377 ENSACLG00000020362 ENSACLG00000020344 ##22 ENSACLG00000020313 ##22 ENSACLG00000020284 #25 ENSACLG00000020273 ENSACLG00000020218 ENSACLG00000020211 ENSACLG00000020187 ##22 bmp15 (ENSACLG00000020179) leap2 (ENSACLG00000020172) PHKA1 (ENSACLG00000019567) ENSACLG00000019524 ENSACLG00000019515 ENSACLG00000019505 gc2 (ENSACLG00000019399) rasl11a (ENSACLG00000019293) ENSACLG00000019245 Zebra mbuna MODERN SPECIES 1106 rps4x (ENSMZEG00005019963) ENSMZEG00005019984 ENSMZEG00005019996 arhgap36 (ENSMZEG00005020002) ENSMZEG00005020018 rasl11a (ENSMZEG00005020026) gc2 (ENSMZEG00005020035) ENSMZEG00005020047 ENSMZEG00005020052 ENSMZEG00005020055 ENSMZEG00005020056 PHKA1 (ENSMZEG00005020060) leap2 (ENSMZEG00005020070) bmp15 (ENSMZEG00005020073) ENSMZEG00005020075 ENSMZEG00005020086 ##22 ENSMZEG00005020094 ##22 ENSMZEG00005020101 ENSMZEG00005020104 ENSMZEG00005020110 #25 ENSMZEG00005020116 ##22 ENSMZEG00005020125 ENSMZEG00005020130 ENSMZEG00005020133 ENSMZEG00005020137 ENSMZEG00005020144 CLCN5 (ENSMZEG00005020148) tnfsf10l (ENSMZEG00005020154) ccnb3 (ENSMZEG00005020161) ENSMZEG00005020168 ENSMZEG00005020170 Nile tilapia DUPLICATION Nile tilapia MODERN SPECIES 15 arhgap36 (ENSONIG00000011859) ENSONIG00000011862 rasl11a (ENSONIG00000011866) gc2 (ENSONIG00000011867) ENSONIG00000033231 ENSONIG00000037570 ENSONIG00000011881 ENSONIG00000028665 ENSONIG00000031857 ENSONIG00000021021 PHKA1 (ENSONIG00000011883) leap2 (ENSONIG00000033705) bmp15 (ENSONIG00000040905) ENSONIG00000031155 ##22 ENSONIG00000032883 ##22 ENSONIG00000029055 ##22 ENSONIG00000011893 ENSONIG00000031665 #25 ENSONIG00000033156 ##22 ENSONIG00000009714 ENSONIG00000028831 ##22 ENSONIG00000034330 ##22 ENSONIG00000041099 ENSONIG00000043063 ENSONIG00000041482 ENSONIG00000006907 ENSONIG00000033940 ENSONIG00000028412 ENSONIG00000006914 ENSONIG00000028628 CLCN5 (ENSONIG00000006919) Nile tilapia MODERN SPECIES 15 ENSONIG00000042813 arhgap36 (ENSONIG00000011859) ENSONIG00000011862 rasl11a (ENSONIG00000011866) gc2 (ENSONIG00000011867) ENSONIG00000033231 ENSONIG00000037570 ENSONIG00000011881 ENSONIG00000028665 ENSONIG00000031857 ENSONIG00000021021 PHKA1 (ENSONIG00000011883) leap2 (ENSONIG00000033705) bmp15 (ENSONIG00000040905) ENSONIG00000031155 ##22 ENSONIG00000032883 ##22 ENSONIG00000029055 ##22 ENSONIG00000011893 ENSONIG00000031665 #25 ENSONIG00000033156 ##22 ENSONIG00000009714 ENSONIG00000028831 ##22 ENSONIG00000034330 ##22 ENSONIG00000041099 ENSONIG00000043063 ENSONIG00000041482 ENSONIG00000006907 ENSONIG00000033940 ENSONIG00000028412 ENSONIG00000006914 ENSONIG00000028628 Pseudocrenilabrinae DUPLICATION Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b.a.a.b.a ##22 Pseudocrenilabrinae_A DUPLICATION Pseudocrenilabrinae_A ANCESTRAL SPECIES 461 ENSGT00950000183145.B.a.b.d.e.b.a.a.b.a.a ##22 ENSGT00940000163160.b.a.a.h.a.a.a.a.b Haplochromini ANCESTRAL SPECIES 478 ENSGT00950000183145.B.a.b.d.e.b.a.a.b.a.a ##22 ENSGT00940000163160.b.a.a.h.a.a.a.a.b Haplochromini_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b.a.a.b.a.a ##22 Haplochromini_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b.a.a.b.a.a ##22 Zebra mbuna MODERN SPECIES 239 CASQ1 (ENSMZEG00005014275) ENSMZEG00005014289 ENSMZEG00005014302 ENSMZEG00005014309 ENSMZEG00005014324 ##22 ENSMZEG00005014331 ENSMZEG00005014341 ENSMZEG00005014346 Burton s mouthbrooder MODERN SPECIES 1415 ENSHBUG00000012139 ##22 ENSHBUG00000000337 Lyretail cichlid MODERN SPECIES 531 supt16h (ENSNBRG00000011563) ENSNBRG00000011539 ENSNBRG00000011525 ENSNBRG00000011514 mrpl48 (ENSNBRG00000011494) ENSNBRG00000011480 ENSNBRG00000011467 PEA15 (ENSNBRG00000011459) casq1b (ENSNBRG00000011369) ENSNBRG00000011315 ENSNBRG00000011254 ENSNBRG00000011224 ##22 ENSNBRG00000011210 ENSNBRG00000011197 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b.a.a.b.a.b ##22 Haplochromini ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b.a.a.b.a.b ##22 Burton s mouthbrooder MODERN SPECIES 1261 ENSHBUG00000005955 ##22 ENSHBUG00000005984 Nile tilapia MODERN SPECIES 15 ENSONIG00000035588 ENSONIG00000000300 ENSONIG00000000307 ENSONIG00000038078 ENSONIG00000000311 ENSONIG00000015567 ENSONIG00000039564 ENSONIG00000000317 ENSONIG00000036803 ENSONIG00000034095 ENSONIG00000042682 ENSONIG00000041836 ENSONIG00000033294 ENSONIG00000035532 ##22 ENSONIG00000038468 #25 ENSONIG00000028522 ##22 ENSONIG00000031235 ENSONIG00000040272 vbp1 (ENSONIG00000006999) RAB39B (ENSONIG00000006997) zgc:162171 (ENSONIG00000006996) ENSONIG00000040012 ENSONIG00000040335 ENSONIG00000039627 ENSONIG00000038944 ENSONIG00000033633 ENSONIG00000006985 zgc:92429 (ENSONIG00000006980) ENSONIG00000006968 ENSONIG00000006967 zgc:109889 (ENSONIG00000029240) Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b.a.a.b.b ##22 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b.a.a.b.b ##22 Haplochromini ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b.a.a.b.b ##22 Haplochromini_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b.a.a.b.b ##22 P. nyererei MODERN SPECIES 70 ENSPNYG00000024088 ##22 Haplochromini_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b.a.a.b.b ##22 Zebra mbuna MODERN SPECIES 13 nop10 (ENSMZEG00005021139) lpcat4 (ENSMZEG00005021142) lpcat4 (ENSMZEG00005021145) emc4 (ENSMZEG00005021149) ENSMZEG00005021154 ENSMZEG00005021157 ENSMZEG00005021168 ENSMZEG00005021175 ENSMZEG00005021179 ENSMZEG00005021184 ENSMZEG00005021191 ENSMZEG00005021195 ENSMZEG00005021198 ##22 ENSMZEG00005021202 ##22 ENSMZEG00005021205 #25 ENSMZEG00005021210 ##22 vbp1 (ENSMZEG00005021217) RAB39B (ENSMZEG00005021222) zgc:162171 (ENSMZEG00005021226) ENSMZEG00005021228 ENSMZEG00005021231 Nile tilapia MODERN SPECIES 15 ENSONIG00000006946 ccnb3 (ENSONIG00000006939) tnfsf10l (ENSONIG00000006933) CLCN5 (ENSONIG00000006919) ENSONIG00000028628 ENSONIG00000006914 ENSONIG00000028412 ENSONIG00000033940 ENSONIG00000006907 ENSONIG00000041482 ENSONIG00000043063 ENSONIG00000041099 ENSONIG00000034330 ##22 ENSONIG00000028831 ##22 ENSONIG00000009714 ENSONIG00000033156 ##22 ENSONIG00000031665 #25 ENSONIG00000011893 ENSONIG00000029055 ##22 ENSONIG00000032883 ##22 ENSONIG00000031155 ##22 bmp15 (ENSONIG00000040905) leap2 (ENSONIG00000033705) PHKA1 (ENSONIG00000011883) ENSONIG00000021021 ENSONIG00000031857 ENSONIG00000028665 ENSONIG00000011881 ENSONIG00000037570 ENSONIG00000033231 gc2 (ENSONIG00000011867) Pseudocrenilabrinae ANCESTRAL SPECIES 191 ENSGT01100000263473.a.b.g.a.a.b.a.b.b ENSGT00950000183145.B.a.b.d.e.b.a.b ##22 ENSGT00940000162108.z.b.b.b #25 Pseudocrenilabrinae_A ANCESTRAL SPECIES 201 ENSGT01100000263473.a.b.g.a.a.b.a.b.b ENSGT00950000183145.B.a.b.d.e.b.a.b ##22 ENSGT00940000162108.z.b.b.b #25 Haplochromini ANCESTRAL SPECIES 205 ENSGT01100000263473.a.b.g.a.a.b.a.b.b ENSGT00950000183145.B.a.b.d.e.b.a.b ##22 ENSGT00940000162108.z.b.b.b #25 Burton s mouthbrooder MODERN SPECIES 595 ENSHBUG00000013671 ##22 vbp1 (ENSHBUG00000013644) RAB39B (ENSHBUG00000013570) zgc:162171 (ENSHBUG00000013548) ENSHBUG00000013501 ENSHBUG00000013426 zgc:92429 (ENSHBUG00000013378) ENSHBUG00000013370 ENSHBUG00000013353 ENSHBUG00000013328 ENSHBUG00000013025 zgc:109889 (ENSHBUG00000013021) htr2cl1 (ENSHBUG00000012966) Haplochromini_A ANCESTRAL SPECIES 213 ENSGT01100000263473.a.b.g.a.a.b.a.b.b ENSGT00950000183145.B.a.b.d.e.b.a.b ##22 ENSGT00940000162108.z.b.b.b #25 Haplochromini_B ANCESTRAL SPECIES 214 ENSGT01100000263473.a.b.g.a.a.b.a.b.b ENSGT00950000183145.B.a.b.d.e.b.a.b ##22 ENSGT00940000162108.z.b.b.b #25 Eastern happy MODERN SPECIES 15 lpcat4 (ENSACLG00000023416) lpcat4 (ENSACLG00000023396) ENSACLG00000023391 emc4 (ENSACLG00000023380) ENSACLG00000023274 ENSACLG00000023245 ENSACLG00000023145 ENSACLG00000023128 ENSACLG00000023115 ENSACLG00000023108 ENSACLG00000023105 ENSACLG00000023099 ENSACLG00000023095 ENSACLG00000023086 ENSACLG00000023073 ENSACLG00000023051 ##22 ENSACLG00000023036 #25 ENSACLG00000023027 ENSACLG00000022986 #25 vbp1 (ENSACLG00000022908) ENSACLG00000022902 RAB39B (ENSACLG00000022893) zgc:162171 (ENSACLG00000022882) ENSACLG00000022873 ENSACLG00000022867 ENSACLG00000022857 ENSACLG00000022825 ENSACLG00000022810 ENSACLG00000022791 ENSACLG00000022481 zgc:92429 (ENSACLG00000022391) Zebra mbuna MODERN SPECIES 13 SLC12A6 (ENSMZEG00005021123) ENSMZEG00005021137 nop10 (ENSMZEG00005021139) lpcat4 (ENSMZEG00005021142) lpcat4 (ENSMZEG00005021145) emc4 (ENSMZEG00005021149) ENSMZEG00005021154 ENSMZEG00005021157 ENSMZEG00005021168 ENSMZEG00005021175 ENSMZEG00005021179 ENSMZEG00005021184 ENSMZEG00005021191 ENSMZEG00005021195 ENSMZEG00005021198 ##22 ENSMZEG00005021202 ##22 ENSMZEG00005021205 #25 ENSMZEG00005021210 ##22 vbp1 (ENSMZEG00005021217) RAB39B (ENSMZEG00005021222) zgc:162171 (ENSMZEG00005021226) ENSMZEG00005021228 ENSMZEG00005021231 Nile tilapia MODERN SPECIES 15 lpcat4 (ENSONIG00000000292) emc4 (ENSONIG00000029923) ENSONIG00000035588 ENSONIG00000000300 ENSONIG00000000307 ENSONIG00000038078 ENSONIG00000000311 ENSONIG00000015567 ENSONIG00000039564 ENSONIG00000000317 ENSONIG00000036803 ENSONIG00000034095 ENSONIG00000042682 ENSONIG00000041836 ENSONIG00000033294 ENSONIG00000035532 ##22 ENSONIG00000038468 #25 ENSONIG00000028522 ##22 ENSONIG00000031235 ENSONIG00000040272 vbp1 (ENSONIG00000006999) RAB39B (ENSONIG00000006997) zgc:162171 (ENSONIG00000006996) ENSONIG00000040012 ENSONIG00000040335 ENSONIG00000039627 ENSONIG00000038944 ENSONIG00000033633 ENSONIG00000006985 zgc:92429 (ENSONIG00000006980) ENSONIG00000006968 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b.b ##22 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b.b ##22 Haplochromini ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b.b ##22 Haplochromini_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b.b ##22 Haplochromini_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.e.b.b ##22 Zebra mbuna MODERN SPECIES 13 tox4b (ENSMZEG00005021119) SLC12A6 (ENSMZEG00005021123) ENSMZEG00005021137 nop10 (ENSMZEG00005021139) lpcat4 (ENSMZEG00005021142) lpcat4 (ENSMZEG00005021145) emc4 (ENSMZEG00005021149) ENSMZEG00005021154 ENSMZEG00005021157 ENSMZEG00005021168 ENSMZEG00005021175 ENSMZEG00005021179 ENSMZEG00005021184 ENSMZEG00005021191 ENSMZEG00005021195 ENSMZEG00005021198 ##22 ENSMZEG00005021202 ##22 ENSMZEG00005021205 #25 ENSMZEG00005021210 ##22 vbp1 (ENSMZEG00005021217) RAB39B (ENSMZEG00005021222) zgc:162171 (ENSMZEG00005021226) ENSMZEG00005021228 ENSMZEG00005021231 Nile tilapia DUPLICATION Nile tilapia DUPLICATION Nile tilapia MODERN SPECIES 15 ENSONIG00000006955 ENSONIG00000006949 ENSONIG00000031949 ENSONIG00000006946 ccnb3 (ENSONIG00000006939) tnfsf10l (ENSONIG00000006933) CLCN5 (ENSONIG00000006919) ENSONIG00000028628 ENSONIG00000006914 ENSONIG00000028412 ENSONIG00000033940 ENSONIG00000006907 ENSONIG00000041482 ENSONIG00000043063 ENSONIG00000041099 ENSONIG00000034330 ##22 ENSONIG00000028831 ##22 ENSONIG00000009714 ENSONIG00000033156 ##22 ENSONIG00000031665 #25 ENSONIG00000011893 ENSONIG00000029055 ##22 ENSONIG00000032883 ##22 ENSONIG00000031155 ##22 bmp15 (ENSONIG00000040905) leap2 (ENSONIG00000033705) PHKA1 (ENSONIG00000011883) ENSONIG00000021021 ENSONIG00000031857 ENSONIG00000028665 ENSONIG00000011881 Nile tilapia MODERN SPECIES 15 ENSONIG00000006949 ENSONIG00000031949 ENSONIG00000006946 ccnb3 (ENSONIG00000006939) tnfsf10l (ENSONIG00000006933) CLCN5 (ENSONIG00000006919) ENSONIG00000028628 ENSONIG00000006914 ENSONIG00000028412 ENSONIG00000033940 ENSONIG00000006907 ENSONIG00000041482 ENSONIG00000043063 ENSONIG00000041099 ENSONIG00000034330 ##22 ENSONIG00000028831 ##22 ENSONIG00000009714 ENSONIG00000033156 ##22 ENSONIG00000031665 #25 ENSONIG00000011893 ENSONIG00000029055 ##22 ENSONIG00000032883 ##22 ENSONIG00000031155 ##22 bmp15 (ENSONIG00000040905) leap2 (ENSONIG00000033705) PHKA1 (ENSONIG00000011883) ENSONIG00000021021 ENSONIG00000031857 ENSONIG00000028665 ENSONIG00000011881 ENSONIG00000037570 Nile tilapia DUPLICATION Nile tilapia MODERN SPECIES 12 mfn2 (ENSONIG00000001607) ENSONIG00000031856 renbp (ENSONIG00000017949) ENSONIG00000038994 ENSONIG00000029390 ENSONIG00000017948 ENSONIG00000029506 dennd2da (ENSONIG00000017946) stk38a (ENSONIG00000017942) pex10 (ENSONIG00000017941) ENSONIG00000035062 plch2a (ENSONIG00000017939) ENSONIG00000038253 ENSONIG00000041292 ENSONIG00000027998 ENSONIG00000036295 ##22 ENSONIG00000043016 ENSONIG00000033185 ARHGEF10L (ENSONIG00000017306) ENSONIG00000034431 igsf21b (ENSONIG00000017309) ENSONIG00000040422 VPS13D (ENSONIG00000017312) ENSONIG00000029256 ENSONIG00000015140 ENSONIG00000032480 ENSONIG00000014407 ENSONIG00000015971 ENSONIG00000009069 ENSONIG00000029924 ENSONIG00000038805 Nile tilapia MODERN SPECIES 15 ENSONIG00000036430 ENSONIG00000042813 arhgap36 (ENSONIG00000011859) ENSONIG00000011862 rasl11a (ENSONIG00000011866) gc2 (ENSONIG00000011867) ENSONIG00000033231 ENSONIG00000037570 ENSONIG00000011881 ENSONIG00000028665 ENSONIG00000031857 ENSONIG00000021021 PHKA1 (ENSONIG00000011883) leap2 (ENSONIG00000033705) bmp15 (ENSONIG00000040905) ENSONIG00000031155 ##22 ENSONIG00000032883 ##22 ENSONIG00000029055 ##22 ENSONIG00000011893 ENSONIG00000031665 #25 ENSONIG00000033156 ##22 ENSONIG00000009714 ENSONIG00000028831 ##22 ENSONIG00000034330 ##22 ENSONIG00000041099 ENSONIG00000043063 ENSONIG00000041482 ENSONIG00000006907 ENSONIG00000033940 ENSONIG00000028412 ENSONIG00000006914 Ovalentaria ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f ##22 Atherinomorphae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f ##22 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f ##22 Cyprinodontoidei ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f ##22 Poeciliinae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f ##22 Poecilia ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f ##22 Guppy MODERN SPECIES 448 ENSPREG00000014049 ADRA2C (ENSPREG00000014061) DOK7 (ENSPREG00000014070) HGFAC (ENSPREG00000014085) ENSPREG00000014122 ENSPREG00000014146 msantd1 (ENSPREG00000014159) dtx4a (ENSPREG00000014172) ENSPREG00000014209 coro1b (ENSPREG00000014223) osbp (ENSPREG00000014254) ACY3 (ENSPREG00000014281) cldnd1a (ENSPREG00000014296) ENSPREG00000014301 ##22 ENSPREG00000014310 ENSPREG00000014318 ##22 ENSPREG00000014335 ENSPREG00000014342 ENSPREG00000014356 ENSPREG00000014365 ENSPREG00000014393 ENSPREG00000014403 ENSPREG00000014441 dctn1a (ENSPREG00000014551) tdrd7b (ENSPREG00000014720) ENSPREG00000014755 tmem88b (ENSPREG00000014814) KDM6B (ENSPREG00000014835) DNAH2 (ENSPREG00000014886) ENSPREG00000015023 serpinh2 (ENSPREG00000015028) Ovalentaria_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f ##22 Cichlidae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f ##22 Midas cichlid DUPLICATION Midas cichlid DUPLICATION Midas cichlid MODERN SPECIES 1066 ENSACIG00000004999 ##22 ENSACIG00000004975 ##22 ENSACIG00000004947 WDR47 (ENSACIG00000004914) Midas cichlid MODERN SPECIES 1066 ENSACIG00000004999 ##22 ENSACIG00000004975 ##22 ENSACIG00000004947 WDR47 (ENSACIG00000004914) Midas cichlid MODERN SPECIES 1561 ENSACIG00000000547 ##22 ENSACIG00000000562 Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f ##22 Nile tilapia DUPLICATION Nile tilapia MODERN SPECIES 9 ARMC6 (ENSONIG00000010159) SLC25A42 (ENSONIG00000010158) ENSONIG00000030949 ENSONIG00000010153 tm6sf2a (ENSONIG00000010150) ENSONIG00000010139 PRKAB2 (ENSONIG00000010137) ENSONIG00000010134 eeig2a (ENSONIG00000010131) prpf38b (ENSONIG00000028490) ENSONIG00000043125 ENSONIG00000033976 FNDC7 (ENSONIG00000010126) ENSONIG00000029113 ##22 ENSONIG00000038055 ENSONIG00000042792 ##22 ENSONIG00000010116 ENSONIG00000029099 ENSONIG00000039582 #25 ENSONIG00000039920 ENSONIG00000010101 WDR47 (ENSONIG00000010099) CAMSAP2 (ENSONIG00000010092) ENSONIG00000036148 ENSONIG00000038116 ENSONIG00000042340 ENSONIG00000027494 ENSONIG00000040812 ENSONIG00000041784 CAPN10 (ENSONIG00000010089) eif4e2 (ENSONIG00000010085) Nile tilapia MODERN SPECIES 9 ENSONIG00000010164 MAU2 (ENSONIG00000010160) ARMC6 (ENSONIG00000010159) SLC25A42 (ENSONIG00000010158) ENSONIG00000030949 ENSONIG00000010153 tm6sf2a (ENSONIG00000010150) ENSONIG00000010139 PRKAB2 (ENSONIG00000010137) ENSONIG00000010134 eeig2a (ENSONIG00000010131) prpf38b (ENSONIG00000028490) ENSONIG00000043125 ENSONIG00000033976 FNDC7 (ENSONIG00000010126) ENSONIG00000029113 ##22 ENSONIG00000038055 ENSONIG00000042792 ##22 ENSONIG00000010116 ENSONIG00000029099 ENSONIG00000039582 #25 ENSONIG00000039920 ENSONIG00000010101 WDR47 (ENSONIG00000010099) CAMSAP2 (ENSONIG00000010092) ENSONIG00000036148 ENSONIG00000038116 ENSONIG00000042340 ENSONIG00000027494 ENSONIG00000040812 ENSONIG00000041784 Pseudocrenilabrinae_A DUPLICATION Pseudocrenilabrinae_A DUPLICATION Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f.e.a ##22 Haplochromini ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f.e.a ##22 Haplochromini_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f.e.a ##22 Haplochromini_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f.e.a ##22 Zebra mbuna MODERN SPECIES 1100 MAU2 (ENSMZEG00005025570) ARMC6 (ENSMZEG00005025567) SLC25A42 (ENSMZEG00005025562) ENSMZEG00005025554 tm6sf2a (ENSMZEG00005025551) ENSMZEG00005025549 ENSMZEG00005025548 ENSMZEG00005025546 PRKAB2 (ENSMZEG00005025544) ENSMZEG00005025543 eeig2a (ENSMZEG00005025539) prpf38b (ENSMZEG00005025536) ENSMZEG00005025534 ENSMZEG00005025533 ENSMZEG00005025531 ENSMZEG00005025529 ##22 ENSMZEG00005025527 EPHB1 (ENSMZEG00005025526) gpc1b (ENSMZEG00005025525) ENSMZEG00005025524 NYAP2 (ENSMZEG00005025523) COL4A4 (ENSMZEG00005025522) ENSMZEG00005025521 fgf12a (ENSMZEG00005025520) parla (ENSMZEG00005025518) extl2 (ENSMZEG00005025517) zgc:110366 (ENSMZEG00005025516) RC3H1 (ENSMZEG00005025514) ENSMZEG00005025512 tal1 (ENSMZEG00005025511) otol1a (ENSMZEG00005025509) P. nyererei MODERN SPECIES 584 RARA (ENSPNYG00000015809) ENSPNYG00000015835 ENSPNYG00000015850 ##22 ENSPNYG00000015861 TANC2 (ENSPNYG00000015905) cyb561 (ENSPNYG00000016083) HDAC5 (ENSPNYG00000016109) pex12 (ENSPNYG00000016168) ENSPNYG00000016178 ENSPNYG00000016187 ENSPNYG00000016204 ENSPNYG00000016217 col1a1a (ENSPNYG00000016239) ENSPNYG00000016351 coa3b (ENSPNYG00000016373) ENSPNYG00000016392 ENSPNYG00000016420 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f.e.b ##22 Haplochromini ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f.e.b ##22 Burton s mouthbrooder MODERN SPECIES 1581 ENSHBUG00000020047 ##22 Haplochromini_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f.e.b ##22 P. nyererei MODERN SPECIES 525 ENSPNYG00000020851 ENSPNYG00000020839 ENSPNYG00000020833 ENSPNYG00000020822 ENSPNYG00000020817 mrpl48 (ENSPNYG00000020778) ENSPNYG00000020765 ENSPNYG00000020741 ENSPNYG00000020733 ENSPNYG00000020717 PEA15 (ENSPNYG00000020713) casq1b (ENSPNYG00000020615) ENSPNYG00000020557 ENSPNYG00000020537 ENSPNYG00000020488 ENSPNYG00000020480 ##22 ENSPNYG00000020468 Lyretail cichlid MODERN SPECIES 523 ENSNBRG00000005721 ENSNBRG00000005750 ENSNBRG00000005758 ENSNBRG00000005774 ENSNBRG00000005794 ENSNBRG00000005810 ENSNBRG00000005822 ##22 ENSNBRG00000005837 Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f.f ##22 Haplochromini ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f.f ##22 Haplochromini_A ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f.f ##22 Haplochromini_B ANCESTRAL SPECIES ENSGT00950000183145.B.a.b.d.f.f ##22 Eastern happy MODERN SPECIES 9 SLC25A42 (ENSACLG00000001966) ENSACLG00000001902 tm6sf2a (ENSACLG00000001874) ENSACLG00000001860 ENSACLG00000001845 ENSACLG00000001825 ENSACLG00000001819 PRKAB2 (ENSACLG00000001789) ENSACLG00000001741 eeig2a (ENSACLG00000001733) prpf38b (ENSACLG00000001712) ENSACLG00000001620 ENSACLG00000001614 ENSACLG00000001582 ENSACLG00000001558 ENSACLG00000001481 ##22 ENSACLG00000001471 ENSACLG00000001369 WDR47 (ENSACLG00000001300) CAMSAP2 (ENSACLG00000001238) ENSACLG00000001230 ENSACLG00000001216 ENSACLG00000001211 ENSACLG00000001202 ENSACLG00000001183 ENSACLG00000001175 ENSACLG00000001099 CAPN10 (ENSACLG00000001087) eif4e2 (ENSACLG00000001038) ENSACLG00000001023 chrng (ENSACLG00000000946) Gnathostomata ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Euteleostomi ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Actinopterygii ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Neopterygii ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Osteoglossocephalai ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Clupeocephala ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Acanthomorphata ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Percomorphaceae ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Ovalentaria ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Ovalentaria_B ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Pomacentridae ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Pomacentridae_A ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Amphiprion ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Clown anemonefish MODERN SPECIES 3456 ENSAOCG00000004880 ENSAOCG00000004808 ENSAOCG00000004709 ENSAOCG00000004698 cntn4 (ENSAOCG00000004670) ENSAOCG00000004593 CFAP57 (ENSAOCG00000002184) ENSAOCG00000004431 cdk5rap1 (ENSAOCG00000004402) ghrh (ENSAOCG00000004390) rpn2 (ENSAOCG00000004375) mybl2b (ENSAOCG00000004342) ift52 (ENSAOCG00000004327) srsf6b (ENSAOCG00000004309) acot8 (ENSAOCG00000004294) ENSAOCG00000004278 ##22 ENSAOCG00000004260 ##22 Spiny chromis MODERN SPECIES 186 cdk5rap1 (ENSAPOG00000023167) ghrh (ENSAPOG00000023181) rpn2 (ENSAPOG00000023276) mybl2b (ENSAPOG00000023327) ift52 (ENSAPOG00000023375) ENSAPOG00000023399 acot8 (ENSAPOG00000023448) ENSAPOG00000023472 #25 ENSAPOG00000023481 #25 ENSAPOG00000023505 ##22 phactr3b (ENSAPOG00000023584) PPP1R3D (ENSAPOG00000023689) SLC41A3 (ENSAPOG00000023742) CHST13 (ENSAPOG00000023757) txnrd3 (ENSAPOG00000023830) bin2b (ENSAPOG00000023852) ITGA5 (ENSAPOG00000023970) fbxo2 (ENSAPOG00000024022) svbp (ENSAPOG00000024032) wnt4 (ENSAPOG00000024052) ENSAPOG00000024073 snrpe (ENSAPOG00000024096) nuf2 (ENSAPOG00000024103) ENSAPOG00000024123 acad9 (ENSAPOG00000024168) Atherinomorphae ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Cyprinodontoidei ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Poeciliinae ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Poecilia ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 NAME_6 ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Sailfin molly MODERN SPECIES 1178 npb (ENSPLAG00000011025) sgsh (ENSPLAG00000010981) slc26a11 (ENSPLAG00000010935) ENSPLAG00000010919 ##22 ENSPLAG00000010903 ENSPLAG00000010888 nanos3 (ENSPLAG00000010871) ENSPLAG00000010861 mri1 (ENSPLAG00000010852) zgc:136864 (ENSPLAG00000010829) ENSPLAG00000010822 ENSPLAG00000010802 khsrp (ENSPLAG00000010763) DCAF15 (ENSPLAG00000010739) RFX1 (ENSPLAG00000010727) rln3b (ENSPLAG00000010703) TNPO2 (ENSPLAG00000010687) Percomorphaceae_C ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Percomorphaceae_D ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Anabantaria ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Anabantoidei ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Siamese fighting fish MODERN SPECIES 4 ENSBSLG00000009832 diabloa (ENSBSLG00000009825) ENSBSLG00000009821 ENSBSLG00000009807 ENSBSLG00000009785 ENSBSLG00000009776 ENSBSLG00000009771 ENSBSLG00000009764 ENSBSLG00000009755 ENSBSLG00000009693 ENSBSLG00000009664 ENSBSLG00000009655 P4HA3 (ENSBSLG00000009598) ENSBSLG00000009488 ENSBSLG00000009474 ENSBSLG00000009468 ##22 ENSBSLG00000009029 ENSBSLG00000008567 ENSBSLG00000008543 ENSBSLG00000008429 ENSBSLG00000008403 ENSBSLG00000025829 ENSBSLG00000025826 ENSBSLG00000025818 ENSBSLG00000025811 ENSBSLG00000025801 ENSBSLG00000025734 ENSBSLG00000025698 tbcela (ENSBSLG00000025661) usp2a (ENSBSLG00000025615) gemin4 (ENSBSLG00000025605) Otomorpha ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Otophysi ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Cyprinoidei ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Cyprininae ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Cyprininae_a ANCESTRAL SPECIES ENSGT00950000183145.B.b ##22 Common carp reference MODERN SPECIES 1 ENSCCRG00000061030 gtf2f1 (ENSCCRG00000043621) alkbh7 (ENSCCRG00000043617) ENSCCRG00000011544 ENSCCRG00000077933 ENSCCRG00000078596 sgsm3 (ENSCCRG00000024518) gtpbp1 (ENSCCRG00000023155) ENSCCRG00000024476 rpl23 (ENSCCRG00000073217) abi3a (ENSCCRG00000073201) mpp2a (ENSCCRG00000065115) pyya (ENSCCRG00000073767) hspb9 (ENSCCRG00000007869) rarab (ENSCCRG00000070551) ENSCCRG00000056654 ##22 ENSCCRG00000077207 ##22 ENSCCRG00000063386 ENSCCRG00000041983 ##22 ENSCCRG00000052811 ENSCCRG00000013183 aoc2 (ENSCCRG00000063375) ENSCCRG00000032099 ENSCCRG00000013229 rusf1 (ENSCCRG00000017991) ENSCCRG00000071035 ENSCCRG00000015331 pheta2 (ENSCCRG00000075166) mylpfa (ENSCCRG00000017709) tbc1d10b (ENSCCRG00000018014) hsd3b7 (ENSCCRG00000017958) Spotted gar MODERN SPECIES 647 tbc1d25 (ENSLOCG00000014341) ENSLOCG00000014340 ENSLOCG00000014337 uba1 (ENSLOCG00000014330) arhgef3l (ENSLOCG00000014322) CFP (ENSLOCG00000014318) tpk2 (ENSLOCG00000014316) ENSLOCG00000014313 tpk2 (ENSLOCG00000014312) RBM10 (ENSLOCG00000014304) rhoaa (ENSLOCG00000014301) ndufb11 (ENSLOCG00000014298) ENSLOCG00000014296 USP21 (ENSLOCG00000014293) lrrc23 (ENSLOCG00000014290) ENSLOCG00000014288 ##22 zgc:158263 (ENSLOCG00000014277) G6PD (ENSLOCG00000014269) ikbkg (ENSLOCG00000014262) ssr4 (ENSLOCG00000014259) sephs3 (ENSLOCG00000014256) Cyclostomata ANCESTRAL SPECIES ENSGT00950000183145.B ##22 Hagfish MODERN SPECIES 397 ENSEBUG00000011898 ##22 ENSEBUG00000015650 ENSEBUG00000004513 ENSEBUG00000009092 Lamprey MODERN SPECIES 527 ENSPMAG00000007502 ENSPMAG00000007504 ENSPMAG00000007505 ##22 Vertebrata ANCESTRAL SPECIES ENSGT00950000183145.A ##22 Gnathostomata DUPLICATION Gnathostomata ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Euteleostomi ANCESTRAL SPECIES 1428 ENSGT00950000183145.C ##22 ENSGT00950000183145.A.a ##22 Sarcopterygii ANCESTRAL SPECIES 252 ENSGT00390000017379 ENSGT00390000011596.a ENSGT00940000153653.a.b.a.b ENSGT00390000009864 ENSGT00390000004368 ENSGT00940000155286 ENSGT00390000013910 ENSGT00940000156623 ENSGT01030000234586.A.a.b ENSGT00940000160875 ENSGT00390000014840.a ENSGT00940000158171 ENSGT00390000006617 ENSGT00950000183145.C ##22 ENSGT00950000183145.A.a ##22 ENSGT00940000161663 Coelacanth DUPLICATION Coelacanth MODERN SPECIES 1349 U2AF2 (ENSLACG00000001648) ENSLACG00000003933 ENSLACG00000005264 ENSLACG00000006376 ENSLACG00000007310 CCDC106 (ENSLACG00000007684) ENSLACG00000009005 ENSLACG00000009642 ZNF581 (ENSLACG00000010025) ENSLACG00000010976 ##22 SBK2 (ENSLACG00000011970) ENSLACG00000012304 Coelacanth MODERN SPECIES 2876 ENSLACG00000003457 ##22 ENSLACG00000005302 Tetrapoda ANCESTRAL SPECIES 112 ENSGT00940000166296 ENSGT00910000144307 ENSGT00950000182932.A.b.b ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b ENSGT00940000163608 ENSGT00390000013183 ENSGT00940000155556.d ENSGT00940000160411 ENSGT00390000007786.b ENSGT01050000244893.c.b.a ENSGT01050000244961.b ENSGT00940000161219 ENSGT00940000154967.a.b.a.a ENSGT00950000182933.C ENSGT00940000153116.A ENSGT00950000182696.B.b ENSGT00940000154315.a ENSGT00950000182935.A Anura ANCESTRAL SPECIES 355 ENSGT00940000166296 ENSGT00910000144307 ENSGT00950000182932.A.b.b ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b.b Frog MODERN SPECIES 7 il4i1 (ENSXETG00000008901) ENSXETG00000008899 ENSXETG00000044173 ENSXETG00000008895 ENSXETG00000047711 ENSXETG00000015078 zswim9 (ENSXETG00000006768) ENSXETG00000037562 lig1 (ENSXETG00000008805) atf5.2 (ENSXETG00000008804) atf5 (ENSXETG00000008803) sbk1l2 (ENSXETG00000008802) znf628 (ENSXETG00000034966) ENSXETG00000037263 nat14 (ENSXETG00000049093) ENSXETG00000030648 ##22 sbk3 (ENSXETG00000016923) ENSXETG00000016907 ENSXETG00000048750 sbk2 (ENSXETG00000019143) ENSXETG00000048636 ENSXETG00000049232 znf865 (ENSXETG00000019138) ENSXETG00000037892 ENSXETG00000043772 ccdc106 (ENSXETG00000031266) ENSXETG00000044778 u2af2 (ENSXETG00000019128) epn1 (ENSXETG00000019123) mpv17l (ENSXETG00000038084) myh14 (ENSXETG00000019058) Amniota ANCESTRAL SPECIES 70 ENSGT00940000166296 ENSGT00910000144307 ENSGT00950000182932.A.b.b ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b ENSGT00940000161663 ENSGT00940000163608 ENSGT00390000013183 ENSGT00940000155556.d ENSGT00940000160411 ENSGT00390000007786.b ENSGT01050000244893.c.b.a ENSGT01050000244961.b ENSGT00940000161219 ENSGT00940000154967.a.b.a.a ENSGT00950000182933.C ENSGT00940000153116.A ENSGT00950000183364 ENSGT00950000182696.B.b Mammalia ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Theria ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Eutheria ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Carnivora ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Caniformia ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Caniformia_b ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Ursidae ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Ursus ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 American black bear MODERN SPECIES 4961 ENSUAMG00000019349 ##22 SBK2 (ENSUAMG00000019350) ENSUAMG00000019351 ZNF579 (ENSUAMG00000019352) FIZ1 (ENSUAMG00000019353) ZNF524 (ENSUAMG00000019354) Sauria ANCESTRAL SPECIES 38 ENSGT00950000183205.b.a.b.a.a ENSGT00940000160569 ENSGT00940000154318.B ENSGT00940000154700 ENSGT00940000168900 ENSGT00940000165851 ENSGT00390000017397 ENSGT00940000158989 ENSGT00530000063801.b ENSGT00940000157783 ENSGT00390000011694 ENSGT00940000167648 ENSGT00940000166296 ENSGT00910000144307 ENSGT00950000182932.A.b.b ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b ENSGT00940000161663 Archelosauria ANCESTRAL SPECIES 43 ENSGT00950000183205.b.a.b.a.a ENSGT00940000160569 ENSGT00940000154318.B ENSGT00940000154700 ENSGT00940000168900 ENSGT00940000165851 ENSGT00390000017397 ENSGT00940000158989 ENSGT00530000063801.b ENSGT00940000157783 ENSGT00390000011694 ENSGT00940000167648 ENSGT00940000166296 ENSGT00910000144307 ENSGT00950000182932.A.b.b ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b Cryptodira ANCESTRAL SPECIES 40 ENSGT00950000183205.b.a.b.a.a ENSGT00940000160569 ENSGT00940000154318.B ENSGT00940000154700 ENSGT00940000168900 ENSGT00940000165851 ENSGT00390000017397 ENSGT00940000158989 ENSGT00530000063801.b ENSGT00940000157783 ENSGT00390000011694 ENSGT00940000167648 ENSGT00940000166296 ENSGT00910000144307 ENSGT00950000182932.A.b.b ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b Testudinoidea ANCESTRAL SPECIES 85 ENSGT00530000063801.b ENSGT00940000157783 ENSGT00390000011694 ENSGT00940000167648 ENSGT00940000166296 ENSGT00910000144307 ENSGT00950000182932.A.b.b ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b ENSGT00940000163050.o.b Testudinidae DUPLICATION Testudinidae ANCESTRAL SPECIES 9 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT01030000235500.a ENSGT00940000163882.d ENSGT00950000183145.A.a.c ##22 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 ENSGT00940000159002 ENSGT00530000063371.B Abingdon island giant tortoise MODERN SPECIES 1955 ENSCABG00000014857 ENSCABG00000014856 ENSCABG00000014854 ##22 ENSCABG00000014853 #29 PSTK (ENSCABG00000014852) IKZF5 (ENSCABG00000014850) ACADSB (ENSCABG00000014847) HMX3 (ENSCABG00000014843) HMX2 (ENSCABG00000014840) BUB3 (ENSCABG00000014835) GPR26 (ENSCABG00000014830) CPXM2 (ENSCABG00000014723) CHST15 (ENSCABG00000014721) OAT (ENSCABG00000014677) NKX1-2 (ENSCABG00000014675) LHPP (ENSCABG00000014672) FAM53B (ENSCABG00000014667) EEF1AKMT2 (ENSCABG00000014664) Goode s thornscrub tortoise MODERN SPECIES 21 PLPP4 (ENSGEVG00005019965) #12 WDR11 (ENSGEVG00005019974) #13 ENSGEVG00005019994 ENSGEVG00005020010 #14 ENSGEVG00005020017 #14 ATE1 (ENSGEVG00005020042) #15 NSMCE4A (ENSGEVG00005020083) #17 ENSGEVG00005020092 #18 BTBD16 (ENSGEVG00005020101) #19 PLEKHA1 (ENSGEVG00005009217) #20 HTRA1 (ENSGEVG00005009396) #21 ENSGEVG00005009567 #22 ENSGEVG00005009616 #22 ENSGEVG00005009786 ENSGEVG00005009832 ENSGEVG00005009897 ##22 C10orf88 (ENSGEVG00005009973) #29 ENSGEVG00005009999 PSTK (ENSGEVG00005010124) IKZF5 (ENSGEVG00005010148) ACADSB (ENSGEVG00005010261) HMX3 (ENSGEVG00005011045) HMX2 (ENSGEVG00005011080) BUB3 (ENSGEVG00005011128) GPR26 (ENSGEVG00005011147) CPXM2 (ENSGEVG00005011196) CHST15 (ENSGEVG00005011451) OAT (ENSGEVG00005011512) NKX1-2 (ENSGEVG00005011543) LHPP (ENSGEVG00005011572) FAM53B (ENSGEVG00005011589) Testudinidae ANCESTRAL SPECIES 37 ENSGT00940000164475.a.b.a.a.d.b.b.a.b.b.b.a.b.b.a.b ENSGT00530000063801.b ENSGT00940000157783 ENSGT00390000011694 ENSGT00940000167648 ENSGT00940000166296 ENSGT00910000144307 ENSGT00950000182932.A.b.b ENSGT00950000183145.A.a.d ##22 ENSGT00940000154852.b ENSGT00940000163050.o.b ENSGT00390000018039 ENSGT00940000153892.A ENSGT00940000160230 ENSGT00530000063461.B ENSGT00510000048522 ENSGT00730000111268 ENSGT00940000159072 ENSGT00510000048375 ENSGT00940000156829 ENSGT00390000006580 ENSGT00940000164710 ENSGT00530000063651.b ENSGT00630000089942 Goode s thornscrub tortoise MODERN SPECIES 134 ENSGEVG00005017181 ENSGEVG00005017164 ENSGEVG00005017144 ENSGEVG00005017087 ENSGEVG00005017071 ENSGEVG00005016939 ENSGEVG00005016889 ENSGEVG00005016863 ATF5 (ENSGEVG00005016849) LIG1 (ENSGEVG00005014421) ZSWIM9 (ENSGEVG00005013939) ENSGEVG00005013912 ENSGEVG00005013860 ZNF628 (ENSGEVG00005013839) NAT14 (ENSGEVG00005013819) ENSGEVG00005013751 ##22 SBK3 (ENSGEVG00005013488) GEMIN7 (ENSGEVG00005013411) CLASRP (ENSGEVG00005013376) RELB (ENSGEVG00005013337) CLPTM1 (ENSGEVG00005013296) ENSGEVG00005013272 ERCC1 (ENSGEVG00005013251) ENSGEVG00005013236 PPP1R37 (ENSGEVG00005013199) ENSGEVG00005013133 NKPD1 (ENSGEVG00005013100) ENSGEVG00005013072 TRAPPC6A (ENSGEVG00005013046) BLOC1S3 (ENSGEVG00005016094) ENSGEVG00005016063 Emydidae ANCESTRAL SPECIES 6 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT01030000235500.a ENSGT00940000163882.d ENSGT00950000183145.A.a ##22 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 ENSGT00940000159002 ENSGT00530000063371.B painted turtle MODERN SPECIES 15 CACUL1 (ENSCPBG00000002191) NANOS1 (ENSCPBG00000002172) EIF3A (ENSCPBG00000001266) ENSCPBG00000001216 SFXN4 (ENSCPBG00000001202) PRDX3 (ENSCPBG00000001195) GRK5 (ENSCPBG00000001153) RGS10 (ENSCPBG00000001134) TIAL1 (ENSCPBG00000001103) #7 BAG3 (ENSCPBG00000001092) #8 PLEKHA1 (ENSCPBG00000001016) #20 HTRA1 (ENSCPBG00000000966) #21 ENSCPBG00000000282 #22 ENSCPBG00000000175 ENSCPBG00000000160 ENSCPBG00000000152 ##22 C10orf88 (ENSCPBG00000000128) #29 ENSCPBG00000000116 IKZF5 (ENSCPBG00000028099) ACADSB (ENSCPBG00000028097) HMX3 (ENSCPBG00000028093) HMX2 (ENSCPBG00000028090) BUB3 (ENSCPBG00000028089) GPR26 (ENSCPBG00000028085) CPXM2 (ENSCPBG00000028082) CHST15 (ENSCPBG00000028078) OAT (ENSCPBG00000028074) NKX1-2 (ENSCPBG00000028073) LHPP (ENSCPBG00000028072) FAM53B (ENSCPBG00000028070) EEF1AKMT2 (ENSCPBG00000028069) Archosauria ANCESTRAL SPECIES 91 ENSGT00730000111394 ENSGT00940000160859 ENSGT01100000263491.a.b.a.a.a.a.a.b.d.b.b ENSGT00940000160527 ENSGT00940000162814 ENSGT00950000182832.A ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b Aves ANCESTRAL SPECIES 177 ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b Neognathae ANCESTRAL SPECIES 30 ENSGT00390000011163 ENSGT00940000158908 ENSGT00940000156521.b ENSGT00390000000972 ENSGT00390000003450 ENSGT00940000160201 ENSGT00390000000020.b ENSGT00940000163889 ENSGT00940000162775 ENSGT00390000010641 ENSGT00940000159796 ENSGT00940000160334 ENSGT00940000161522 ENSGT00390000001289.a ENSGT00910000144307 ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b ENSGT00940000159520.h.r ENSGT00730000112245 ENSGT00940000165047 ENSGT00390000010778 ENSGT00390000017361 ENSGT00940000160990 ENSGT00940000153899.a.b ENSGT00940000159701 ENSGT00940000160974.b ENSGT00530000069101 ENSGT00940000164955 ENSGT00940000158912 ENSGT00940000156528 ENSGT00940000159326 Galloanserae ANCESTRAL SPECIES 100 ENSGT00910000144307 ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b Anatidae ANCESTRAL SPECIES 171 ENSGT00910000144307 ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b Pink-footed goose MODERN SPECIES 612 ENSABRG00000021278 ENSABRG00000021268 ##22 ENSABRG00000021264 Duck MODERN SPECIES 2001 LIG1 (ENSAPLG00000013201) ENSAPLG00000026423 ZNF628 (ENSAPLG00000021255) ENSAPLG00000024164 ##22 ENSAPLG00000021641 Phasianidae ANCESTRAL SPECIES 37 ENSGT00910000144307 ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b ENSGT00940000164286.b ENSGT00940000164475.a.a.b ENSGT00940000159269.g.b.b.c.a ENSGT00940000164475.a.b.a.a.a.a ENSGT01070000253822.D.b ENSGT01070000253822.D.a.l ENSGT01070000253822.D.a.m ENSGT01070000253822.G.f.a.a ENSGT01070000253822.F ENSGT01070000253822.G.e ENSGT00400000024875 ENSGT00950000182832.A ENSGT00940000162814 ENSGT00940000160527 Japanese quail MODERN SPECIES 498 ZNF628 (ENSCJPG00005004738) ENSCJPG00005004736 ##22 ENSCJPG00005004735 ENSCJPG00005004733 ENSCJPG00005004727 ENSCJPG00005004723 ENSCJPG00005004719 ENSCJPG00005004718 ENSCJPG00005004717 ENSCJPG00005004716 ENSCJPG00005004711 ENSCJPG00005004708 ENSCJPG00005004703 ENSCJPG00005004700 ENSCJPG00005004688 ENSCJPG00005004685 ENSCJPG00005004681 Phasianidae_b ANCESTRAL SPECIES 44 ENSGT00910000144307 ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b ENSGT00940000164286.b ENSGT00940000164475.a.b.a.a.b ENSGT00940000164475.a.a.a ENSGT01100000263521.a.b.a.b ENSGT00960000189972 ENSGT00940000159269.g.b.b.c.b ENSGT00940000164475.a.a.b ENSGT00940000159269.g.b.b.c.a ENSGT00940000164475.a.b.a.a.a.a ENSGT01070000253822.G.f.b ENSGT01070000253822.D.a.l.a ENSGT01070000253822.D.a.m ENSGT01070000253822.G.f.a.a ENSGT01070000253822.F Turkey MODERN SPECIES 25 ENSMGAG00000009192 ENSMGAG00000009202 ENSMGAG00000017401 LRP5 (ENSMGAG00000009268) PPP6R3 (ENSMGAG00000009324) GAL (ENSMGAG00000009367) TESMIN (ENSMGAG00000009374) ENSMGAG00000009377 ENSMGAG00000009437 ENSMGAG00000019769 ENSMGAG00000009449 ENSMGAG00000009519 RAB3IL1 (ENSMGAG00000009595) ENSMGAG00000009495 ENSMGAG00000009502 ENSMGAG00000009769 ##22 ENSMGAG00000018183 MPEG1 (ENSMGAG00000015790) DTX4 (ENSMGAG00000009754) CNTF (ENSMGAG00000009753) ZFP91 (ENSMGAG00000009741) LPXN (ENSMGAG00000009727) CTNND1 (ENSMGAG00000009685) ENSMGAG00000021283 TMX2 (ENSMGAG00000003554) ZDHHC5 (ENSMGAG00000009645) CLP1 (ENSMGAG00000009643) YPEL4 (ENSMGAG00000009641) SERPING1 (ENSMGAG00000009628) ENSMGAG00000017617 ENSMGAG00000018292 Chicken DUPLICATION Chicken MODERN SPECIES 24 ENSGALG00010004397 ENSGALG00010004406 ENSGALG00010004420 LIG1 (ENSGALG00010004489) ENSGALG00010004622 ENSGALG00010004630 ENSGALG00010004705 ##22 ENSGALG00010004729 ENSGALG00010004735 ENSGALG00010004765 ENSGALG00010004852 ENSGALG00010004962 ENSGALG00010004971 ENSGALG00010004985 ENSGALG00010004990 PIT54 (ENSGALG00010004995) ENSGALG00010005007 CD163L (ENSGALG00010005011) ENSGALG00010005058 ENSGALG00010006046 ENSGALG00010005073 ENSGALG00010005050 Chicken DUPLICATION Chicken DUPLICATION Chicken DUPLICATION Chicken DUPLICATION Chicken DUPLICATION Chicken MODERN SPECIES 34 CHKA (ENSGALG00010025635) KMT5B (ENSGALG00010025652) C11orf24 (ENSGALG00010025737) LRP5 (ENSGALG00010025790) PPP6R3 (ENSGALG00010025835) GAL (ENSGALG00010025881) TESMIN (ENSGALG00010025889) CPT1A (ENSGALG00010025905) ENSGALG00010025914 ENSGALG00010025937 ENSGALG00010025957 FADS2 (ENSGALG00010025968) RAB3IL1 (ENSGALG00010025986) BEST1 (ENSGALG00010025995) FTH1 (ENSGALG00010026002) ENSGALG00010026004 ##22 ENSGALG00010026019 ##22 ENSGALG00010026037 ##22 ENSGALG00010026043 ##22 ENSGALG00010026070 ##22 ENSGALG00010026079 ##22 MPEG1 (ENSGALG00010026061) DTX4 (ENSGALG00010026091) CNTF (ENSGALG00010026105) ZFP91 (ENSGALG00010026112) LPXN (ENSGALG00010026137) CTNND1 (ENSGALG00010026163) TMX2 (ENSGALG00010026203) MED19 (ENSGALG00010026209) ZDHHC5 (ENSGALG00010026234) CLP1 (ENSGALG00010026244) Chicken MODERN SPECIES 34 KMT5B (ENSGALG00010025652) C11orf24 (ENSGALG00010025737) LRP5 (ENSGALG00010025790) PPP6R3 (ENSGALG00010025835) GAL (ENSGALG00010025881) TESMIN (ENSGALG00010025889) CPT1A (ENSGALG00010025905) ENSGALG00010025914 ENSGALG00010025937 ENSGALG00010025957 FADS2 (ENSGALG00010025968) RAB3IL1 (ENSGALG00010025986) BEST1 (ENSGALG00010025995) FTH1 (ENSGALG00010026002) ENSGALG00010026004 ##22 ENSGALG00010026019 ##22 ENSGALG00010026037 ##22 ENSGALG00010026043 ##22 ENSGALG00010026070 ##22 ENSGALG00010026079 ##22 MPEG1 (ENSGALG00010026061) DTX4 (ENSGALG00010026091) CNTF (ENSGALG00010026105) ZFP91 (ENSGALG00010026112) LPXN (ENSGALG00010026137) CTNND1 (ENSGALG00010026163) TMX2 (ENSGALG00010026203) MED19 (ENSGALG00010026209) ZDHHC5 (ENSGALG00010026234) CLP1 (ENSGALG00010026244) YPEL4 (ENSGALG00010026249) Chicken DUPLICATION Chicken MODERN SPECIES 34 LRP5 (ENSGALG00010025790) PPP6R3 (ENSGALG00010025835) GAL (ENSGALG00010025881) TESMIN (ENSGALG00010025889) CPT1A (ENSGALG00010025905) ENSGALG00010025914 ENSGALG00010025937 ENSGALG00010025957 FADS2 (ENSGALG00010025968) RAB3IL1 (ENSGALG00010025986) BEST1 (ENSGALG00010025995) FTH1 (ENSGALG00010026002) ENSGALG00010026004 ##22 ENSGALG00010026019 ##22 ENSGALG00010026037 ##22 ENSGALG00010026043 ##22 ENSGALG00010026070 ##22 ENSGALG00010026079 ##22 MPEG1 (ENSGALG00010026061) DTX4 (ENSGALG00010026091) CNTF (ENSGALG00010026105) ZFP91 (ENSGALG00010026112) LPXN (ENSGALG00010026137) CTNND1 (ENSGALG00010026163) TMX2 (ENSGALG00010026203) MED19 (ENSGALG00010026209) ZDHHC5 (ENSGALG00010026234) CLP1 (ENSGALG00010026244) YPEL4 (ENSGALG00010026249) SERPING1 (ENSGALG00010026291) ENSGALG00010026316 Chicken MODERN SPECIES 34 GAL (ENSGALG00010025881) TESMIN (ENSGALG00010025889) CPT1A (ENSGALG00010025905) ENSGALG00010025914 ENSGALG00010025937 ENSGALG00010025957 FADS2 (ENSGALG00010025968) RAB3IL1 (ENSGALG00010025986) BEST1 (ENSGALG00010025995) FTH1 (ENSGALG00010026002) ENSGALG00010026004 ##22 ENSGALG00010026019 ##22 ENSGALG00010026037 ##22 ENSGALG00010026043 ##22 ENSGALG00010026070 ##22 ENSGALG00010026079 ##22 MPEG1 (ENSGALG00010026061) DTX4 (ENSGALG00010026091) CNTF (ENSGALG00010026105) ZFP91 (ENSGALG00010026112) LPXN (ENSGALG00010026137) CTNND1 (ENSGALG00010026163) TMX2 (ENSGALG00010026203) MED19 (ENSGALG00010026209) ZDHHC5 (ENSGALG00010026234) CLP1 (ENSGALG00010026244) YPEL4 (ENSGALG00010026249) SERPING1 (ENSGALG00010026291) ENSGALG00010026316 ENSGALG00010026329 TIMM10 (ENSGALG00010026344) Chicken MODERN SPECIES 34 C11orf24 (ENSGALG00010025737) LRP5 (ENSGALG00010025790) PPP6R3 (ENSGALG00010025835) GAL (ENSGALG00010025881) TESMIN (ENSGALG00010025889) CPT1A (ENSGALG00010025905) ENSGALG00010025914 ENSGALG00010025937 ENSGALG00010025957 FADS2 (ENSGALG00010025968) RAB3IL1 (ENSGALG00010025986) BEST1 (ENSGALG00010025995) FTH1 (ENSGALG00010026002) ENSGALG00010026004 ##22 ENSGALG00010026019 ##22 ENSGALG00010026037 ##22 ENSGALG00010026043 ##22 ENSGALG00010026070 ##22 ENSGALG00010026079 ##22 MPEG1 (ENSGALG00010026061) DTX4 (ENSGALG00010026091) CNTF (ENSGALG00010026105) ZFP91 (ENSGALG00010026112) LPXN (ENSGALG00010026137) CTNND1 (ENSGALG00010026163) TMX2 (ENSGALG00010026203) MED19 (ENSGALG00010026209) ZDHHC5 (ENSGALG00010026234) CLP1 (ENSGALG00010026244) YPEL4 (ENSGALG00010026249) SERPING1 (ENSGALG00010026291) Chicken MODERN SPECIES 34 PPP6R3 (ENSGALG00010025835) GAL (ENSGALG00010025881) TESMIN (ENSGALG00010025889) CPT1A (ENSGALG00010025905) ENSGALG00010025914 ENSGALG00010025937 ENSGALG00010025957 FADS2 (ENSGALG00010025968) RAB3IL1 (ENSGALG00010025986) BEST1 (ENSGALG00010025995) FTH1 (ENSGALG00010026002) ENSGALG00010026004 ##22 ENSGALG00010026019 ##22 ENSGALG00010026037 ##22 ENSGALG00010026043 ##22 ENSGALG00010026070 ##22 ENSGALG00010026079 ##22 MPEG1 (ENSGALG00010026061) DTX4 (ENSGALG00010026091) CNTF (ENSGALG00010026105) ZFP91 (ENSGALG00010026112) LPXN (ENSGALG00010026137) CTNND1 (ENSGALG00010026163) TMX2 (ENSGALG00010026203) MED19 (ENSGALG00010026209) ZDHHC5 (ENSGALG00010026234) CLP1 (ENSGALG00010026244) YPEL4 (ENSGALG00010026249) SERPING1 (ENSGALG00010026291) ENSGALG00010026316 ENSGALG00010026329 Chicken MODERN SPECIES 34 GPX2 (ENSGALG00010021537) CHURC1 (ENSGALG00010021558) SPTB (ENSGALG00010021604) PLEKHG3 (ENSGALG00010021640) NUP160 (ENSGALG00010024170) FNBP4 (ENSGALG00010021695) AGBL2 (ENSGALG00010021737) MTCH2 (ENSGALG00010021751) NUDT8 (ENSGALG00010021835) NDUFV1 (ENSGALG00010021892) ENSGALG00010021851 CABP2 (ENSGALG00010021938) CDK2AP2 (ENSGALG00010021947) PITPNM1 (ENSGALG00010021953) AIP (ENSGALG00010022042) ENSGALG00010022050 ##22 NLRP3 (ENSGALG00010022058) CEND1 (ENSGALG00010022130) PDDC1 (ENSGALG00010022137) TALDO1 (ENSGALG00010022148) EPS8L2 (ENSGALG00010022157) TMEM80 (ENSGALG00010022227) DEAF1 (ENSGALG00010022239) DRD4 (ENSGALG00010022249) SCT (ENSGALG00010022996) CDHR5 (ENSGALG00010023008) BUB1B (ENSGALG00010023017) PAK6 (ENSGALG00010023257) PLCB2 (ENSGALG00010023305) INAFM2 (ENSGALG00010023835) ENSGALG00010023441 Neognathae_b ANCESTRAL SPECIES 14 ENSGT00390000011163 ENSGT00940000158908 ENSGT00940000156521.b ENSGT00390000000972 ENSGT00390000003450 ENSGT00940000160201 ENSGT00390000000020.b ENSGT00940000163889 ENSGT00940000162775 ENSGT00390000010641 ENSGT00940000159796 ENSGT00940000160334 ENSGT00940000161522 ENSGT00390000001289.a ENSGT00910000144307 ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b ENSGT00940000159520.h.r ENSGT00730000112245 ENSGT00940000165047 ENSGT00390000010778 ENSGT00390000017361 ENSGT00940000160990 ENSGT00940000153899.a.b ENSGT00940000159701 ENSGT00940000160974.b ENSGT00530000069101 ENSGT00940000164955 ENSGT00940000158912 ENSGT00940000156528 ENSGT00940000159326 Neognathae_c ANCESTRAL SPECIES 52 ENSGT00440000037417.B ENSGT00390000015505 ENSGT00940000157947 ENSGT00730000111394 ENSGT00940000160859 ENSGT00940000160527 ENSGT00940000162814 ENSGT00950000182832.A ENSGT00400000024875 ENSGT00940000154715.b.k.b.a.b.b.b.a.b.b.a ENSGT00910000144307 ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b Golden eagle MODERN SPECIES 42 ENSACCG00020011656 ENSACCG00020011770 ENSACCG00020011810 ENSACCG00020011844 ENSACCG00020011872 ENSACCG00020011986 ENSACCG00020012106 ENSACCG00020012128 ENSACCG00020012139 ENSACCG00020012161 ENSACCG00020012270 ENSACCG00020012348 ENSACCG00020012392 ENSACCG00020012420 ENSACCG00020012465 ENSACCG00020012526 ##22 ENSACCG00020012548 ENSACCG00020012564 ENSACCG00020012610 ENSACCG00020012678 ENSACCG00020012690 ENSACCG00020012712 ENSACCG00020012739 ENSACCG00020012768 Kakapo MODERN SPECIES 18 ZBTB45 (ENSSHBG00005008753) TRIM28 (ENSSHBG00005008758) UBE2M (ENSSHBG00005008772) CHMP2A (ENSSHBG00005008783) ENSSHBG00005008787 ENSSHBG00005008795 ENSSHBG00005008800 ENSSHBG00005008804 ENSSHBG00005008810 ENSSHBG00005008827 ENSSHBG00005008847 ENSSHBG00005008852 ##22 ENSSHBG00005008865 ZNF628 (ENSSHBG00005008886) ENSSHBG00005008918 ENSSHBG00005008934 ##22 ENSSHBG00005008940 Passeriformes ANCESTRAL SPECIES 39 ENSGT00940000157848 ENSGT00940000160477 ENSGT00390000011163 ENSGT00940000158908 ENSGT00940000156521.b ENSGT00390000000972 ENSGT00390000003450 ENSGT00940000160201 ENSGT00390000000020.b ENSGT00940000163889 ENSGT00390000010641 ENSGT00940000159796 ENSGT00940000160334 ENSGT00940000161522 ENSGT00390000001289.a ENSGT00950000183145.A.a ##22 ENSGT00940000159520.h.r ENSGT00730000112245 ENSGT00940000165047 ENSGT00390000010778 ENSGT00390000017361 ENSGT00940000160990 ENSGT00940000153899.a.b ENSGT00940000159701 ENSGT00940000160974.b ENSGT00530000069101 ENSGT00940000164955 Passeriformes_d DUPLICATION Passeriformes_d ANCESTRAL SPECIES 24 ENSGT00950000183128.C ENSGT00940000157848 ENSGT00940000160477 ENSGT00390000011163 ENSGT00940000156521.b ENSGT00390000000972 ENSGT00390000003450 ENSGT00940000160201 ENSGT00390000000020.b ENSGT00390000010641 ENSGT00940000159796 ENSGT00940000164685 ENSGT00940000160334 ENSGT00940000161522 ENSGT00390000001289.a ENSGT00950000183145.A.a.g ##22 ENSGT00940000159520.h.r ENSGT00730000112245 ENSGT00390000010778 ENSGT00390000017361 ENSGT00940000160990 ENSGT00940000153899.a.b ENSGT00940000159701 ENSGT00940000160974.b ENSGT00530000069101 ENSGT00940000164955 ENSGT00390000008048 ENSGT00940000157122 ENSGT00420000029890 ENSGT00940000156393 ENSGT00940000160259.b Passeriformes_g ANCESTRAL SPECIES ENSGT00940000157848 ENSGT00940000160477 ENSGT00390000011163 ENSGT00940000156521.b ENSGT00390000000972 ENSGT00390000003450 ENSGT00940000160201 ENSGT00390000000020.b ENSGT00940000163889 ENSGT00390000010641 ENSGT00940000159796 ENSGT00940000161522 ENSGT00390000001289.a ENSGT00950000183145.A.a.h ##22 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.A.a.g ##22 ENSGT00940000159520.h.r ENSGT00730000112245 ENSGT00390000010778 ENSGT00390000017361 ENSGT00940000154675 ENSGT00390000005097 ENSGT00530000063722.b ENSGT00530000063822.a.b ENSGT00390000003145 ENSGT00950000183011.c.a.b ENSGT00940000154380.b ENSGT00940000155385 ENSGT00950000183017.b.a ENSGT00940000157939 ENSGT00940000157584 Passeroidea ANCESTRAL SPECIES 1 ENSGT00940000157848 ENSGT00940000160477 ENSGT00390000011163 ENSGT00940000156521.b ENSGT00390000000972 ENSGT00390000003450 ENSGT00940000160201 ENSGT00390000000020.b ENSGT00940000163889 ENSGT00390000010641 ENSGT00940000159796 ENSGT00940000161522 ENSGT00390000001289.a ENSGT00950000183145.A.a.h ##22 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.A.a.g ##22 ENSGT00940000159520.h.r ENSGT00730000112245 ENSGT00390000010778 ENSGT00390000017361 ENSGT00940000154675 ENSGT00390000005097 ENSGT00530000063722.b ENSGT00530000063822.a.b ENSGT00390000003145 ENSGT00950000183011.c.a.b ENSGT00940000154380.b ENSGT00940000155385 ENSGT00950000183017.b.a ENSGT00940000157939 ENSGT00940000157584 Zebra finch DUPLICATION Zebra finch MODERN SPECIES 27 ENSTGUG00000007446 MAX (ENSTGUG00000023132) FNTB (ENSTGUG00000007483) RAB15 (ENSTGUG00000020981) CHURC1 (ENSTGUG00000026206) PLEKHG3 (ENSTGUG00000007578) NUP160 (ENSTGUG00000007581) FNBP4 (ENSTGUG00000007629) AGBL2 (ENSTGUG00000007643) MTCH2 (ENSTGUG00000007652) NUDT8 (ENSTGUG00000007694) ENSTGUG00000007725 CDK2AP2 (ENSTGUG00000022260) AIP (ENSTGUG00000007764) ENSTGUG00000007776 ##22 ENSTGUG00000007792 ##22 ENSTGUG00000007810 ENSTGUG00000016693 ##22 ENSTGUG00000020021 ENSTGUG00000007815 TALDO1 (ENSTGUG00000007821) EIF4G2 (ENSTGUG00000007840) CTR9 (ENSTGUG00000007907) IRAG1 (ENSTGUG00000007955) LYVE1 (ENSTGUG00000007979) RNF141 (ENSTGUG00000020047) AMPD3 (ENSTGUG00000008001) ENSTGUG00000022953 ENSTGUG00000008020 SBF2 (ENSTGUG00000008025) SWAP70 (ENSTGUG00000008108) Zebra finch MODERN SPECIES 27 FNTB (ENSTGUG00000007483) RAB15 (ENSTGUG00000020981) CHURC1 (ENSTGUG00000026206) PLEKHG3 (ENSTGUG00000007578) NUP160 (ENSTGUG00000007581) FNBP4 (ENSTGUG00000007629) AGBL2 (ENSTGUG00000007643) MTCH2 (ENSTGUG00000007652) NUDT8 (ENSTGUG00000007694) ENSTGUG00000007725 CDK2AP2 (ENSTGUG00000022260) AIP (ENSTGUG00000007764) ENSTGUG00000007776 ##22 ENSTGUG00000007792 ##22 ENSTGUG00000007810 ENSTGUG00000016693 ##22 ENSTGUG00000020021 ENSTGUG00000007815 TALDO1 (ENSTGUG00000007821) EIF4G2 (ENSTGUG00000007840) CTR9 (ENSTGUG00000007907) IRAG1 (ENSTGUG00000007955) LYVE1 (ENSTGUG00000007979) RNF141 (ENSTGUG00000020047) AMPD3 (ENSTGUG00000008001) ENSTGUG00000022953 ENSTGUG00000008020 SBF2 (ENSTGUG00000008025) SWAP70 (ENSTGUG00000008108) WEE1 (ENSTGUG00000008127) ZNF143 (ENSTGUG00000008153) Flycatcher MODERN SPECIES 24 MAX (ENSFALG00000026119) FNTB (ENSFALG00000001199) RAB15 (ENSFALG00000001205) GPX2 (ENSFALG00000001208) CHURC1 (ENSFALG00000024378) PLEKHG3 (ENSFALG00000001267) NUP160 (ENSFALG00000001275) FNBP4 (ENSFALG00000001280) AGBL2 (ENSFALG00000001274) MTCH2 (ENSFALG00000001294) NDUFV1 (ENSFALG00000001321) ENSFALG00000001331 CDK2AP2 (ENSFALG00000024493) PITPNM1 (ENSFALG00000001333) AIP (ENSFALG00000001339) ENSFALG00000023299 ##22 ENSFALG00000010841 ENSFALG00000015296 ENSFALG00000027704 TALDO1 (ENSFALG00000026408) EPS8L2 (ENSFALG00000010891) TMEM80 (ENSFALG00000010901) ENSFALG00000022914 DRD4 (ENSFALG00000010941) ENSFALG00000010954 ENSFALG00000010961 MPEG1 (ENSFALG00000010968) DTX4 (ENSFALG00000010976) CNTF (ENSFALG00000010990) ZFP91 (ENSFALG00000025856) ENSFALG00000024882 Passeriformes_d ANCESTRAL SPECIES ENSGT00950000183145.A.a.h ##22 Flycatcher DUPLICATION Flycatcher DUPLICATION Flycatcher MODERN SPECIES 503 ENSFALG00000005344 ##22 Flycatcher MODERN SPECIES 123 ENSFALG00000007906 ##22 Flycatcher MODERN SPECIES 157 ENSFALG00000028807 ##22 Passeriformes_g ANCESTRAL SPECIES ENSGT00530000064011 ENSGT00950000183128.C ENSGT00940000157848 ENSGT00940000160477 ENSGT00390000011163 ENSGT00940000156521.b ENSGT00390000000972 ENSGT00390000003450 ENSGT00940000160201 ENSGT00390000000020.b ENSGT00940000163889 ENSGT00390000010641 ENSGT00940000159796 ENSGT00940000161522 ENSGT00390000001289.a ENSGT00950000183145.A.a.h ##22 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.A.a.g ##22 ENSGT00940000159520.h.r ENSGT00730000112245 ENSGT00390000010778 ENSGT00390000017361 ENSGT00940000154675 ENSGT00390000005097 ENSGT00530000063722.b ENSGT00530000063822.a.b ENSGT00390000003145 ENSGT00950000183011.c.a.b ENSGT00940000154380.b ENSGT00940000155385 ENSGT00950000183017.b.a Passeroidea ANCESTRAL SPECIES 1 ENSGT00530000064011 ENSGT00950000183128.C ENSGT00940000157848 ENSGT00940000160477 ENSGT00390000011163 ENSGT00940000156521.b ENSGT00390000000972 ENSGT00390000003450 ENSGT00940000160201 ENSGT00390000000020.b ENSGT00940000163889 ENSGT00390000010641 ENSGT00940000159796 ENSGT00940000161522 ENSGT00390000001289.a ENSGT00950000183145.A.a.h ##22 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.A.a.g ##22 ENSGT00940000159520.h.r ENSGT00730000112245 ENSGT00390000010778 ENSGT00390000017361 ENSGT00940000154675 ENSGT00390000005097 ENSGT00530000063722.b ENSGT00530000063822.a.b ENSGT00390000003145 ENSGT00950000183011.c.a.b ENSGT00940000154380.b ENSGT00940000155385 ENSGT00950000183017.b.a Common canary MODERN SPECIES 45 MAX (ENSSCAG00000011198) FNTB (ENSSCAG00000011191) RAB15 (ENSSCAG00000011186) GPX2 (ENSSCAG00000011181) CHURC1 (ENSSCAG00000011180) ENSSCAG00000010411 ENSSCAG00000010408 NUP160 (ENSSCAG00000010249) FNBP4 (ENSSCAG00000010207) AGBL2 (ENSSCAG00000010196) MTCH2 (ENSSCAG00000010124) NDUFV1 (ENSSCAG00000010109) CABP2 (ENSSCAG00000010107) PITPNM1 (ENSSCAG00000010097) AIP (ENSSCAG00000010091) ENSSCAG00000010089 ##22 ENSSCAG00000010082 ENSSCAG00000010080 GATD1 (ENSSCAG00000010075) TALDO1 (ENSSCAG00000010072) MPEG1 (ENSSCAG00000010068) DTX4 (ENSSCAG00000010060) CNTF (ENSSCAG00000010051) ZFP91 (ENSSCAG00000010044) LPXN (ENSSCAG00000010039) CTNND1 (ENSSCAG00000010027) ENSSCAG00000010016 MED19 (ENSSCAG00000010014) ZDHHC5 (ENSSCAG00000009995) CLP1 (ENSSCAG00000009980) YPEL4 (ENSSCAG00000009975) Great tit MODERN SPECIES 25 FNTB (ENSPMJG00000003875) RAB15 (ENSPMJG00000003880) GPX2 (ENSPMJG00000003949) CHURC1 (ENSPMJG00000003984) SPTB (ENSPMJG00000003988) PLEKHG3 (ENSPMJG00000003998) NUP160 (ENSPMJG00000004017) FNBP4 (ENSPMJG00000004890) AGBL2 (ENSPMJG00000004893) MTCH2 (ENSPMJG00000004897) NDUFV1 (ENSPMJG00000004898) CABP2 (ENSPMJG00000004899) CDK2AP2 (ENSPMJG00000004904) PITPNM1 (ENSPMJG00000004907) AIP (ENSPMJG00000005094) ENSPMJG00000005096 ##22 ENSPMJG00000005097 ENSPMJG00000005099 ENSPMJG00000005101 TALDO1 (ENSPMJG00000005127) EIF4G2 (ENSPMJG00000005130) CTR9 (ENSPMJG00000005691) ENSPMJG00000006038 IRAG1 (ENSPMJG00000006040) LYVE1 (ENSPMJG00000006161) RNF141 (ENSPMJG00000006162) AMPD3 (ENSPMJG00000006166) ADM (ENSPMJG00000006168) SBF2 (ENSPMJG00000006175) SWAP70 (ENSPMJG00000006194) WEE1 (ENSPMJG00000006199) Lepidosauria ANCESTRAL SPECIES 161 ENSGT00530000063801.b ENSGT00940000157783 ENSGT00390000011694 ENSGT00940000167648 ENSGT00940000166296 ENSGT00910000144307 ENSGT00950000182932.A.b.b ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b ENSGT00940000161663 Episquamata ANCESTRAL SPECIES 5 ENSGT01050000244815.A.c.a.a.b.h.b ENSGT00940000155138.i.b.b ENSGT00940000162662.u ENSGT00950000182872.f.b.b ENSGT00940000153875.d.a.a ENSGT00940000156397.a.b ENSGT00940000161599 ENSGT00940000159269.g.b.b ENSGT00530000063801.b ENSGT00940000157783 ENSGT00940000167648 ENSGT00940000154715.b.k.b.a.b.b.b.a.a.c ENSGT00940000166296 ENSGT00910000144307 ENSGT00950000182932.A.b.b ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b ENSGT00940000161663 ENSGT01050000244828.b.k.a.a.a.a ENSGT01050000244815.A.c.a.a.b.g ENSGT01060000248581.B.db.b.b.a ENSGT01060000248581.B.db.b.b.b.a ENSGT00940000164580.a ENSGT00950000182832.A ENSGT00940000162814 ENSGT00940000160527 ENSGT01100000263491.a.b.a.a.a.a.a.b.d.b.d ENSGT00940000160859 ENSGT00940000157947 ENSGT00940000153527.d.qb.a.a ENSGT00730000111394 Laterata ANCESTRAL SPECIES 82 ENSGT00940000164475.a.a ENSGT01100000263552.h.b.t.b.b.a ENSGT01100000263507.E.b ENSGT00940000166296 ENSGT00910000144307 ENSGT00950000182932.A.b.b ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b ENSGT00940000161663 ENSGT01050000244828.b.k.a.a.a.a Argentine black and white tegu DUPLICATION Argentine black and white tegu MODERN SPECIES 38 ENSSMRG00000007290 ENSSMRG00000007291 ENSSMRG00000007292 ENSSMRG00000007301 ENSSMRG00000007313 ENSSMRG00000007320 ENSSMRG00000007331 ENSSMRG00000007359 ENSSMRG00000007370 ENSSMRG00000007374 ENSSMRG00000007379 ENSSMRG00000007380 ENSSMRG00000007382 ZNF628 (ENSSMRG00000007383) NAT14 (ENSSMRG00000007398) ENSSMRG00000007403 ##22 ENSSMRG00000007417 SBK2 (ENSSMRG00000007420) ENSSMRG00000007422 ENSSMRG00000007430 ENSSMRG00000007446 ENSSMRG00000007465 ENSSMRG00000007470 Argentine black and white tegu MODERN SPECIES 58 ENSSMRG00000004482 ##22 ENSSMRG00000004488 ##22 ENSSMRG00000004505 ##22 C10orf88 (ENSSMRG00000004535) #29 ENSSMRG00000004550 PSTK (ENSSMRG00000004569) IKZF5 (ENSSMRG00000004571) ACADSB (ENSSMRG00000004574) HMX3 (ENSSMRG00000004577) HMX2 (ENSSMRG00000004581) BUB3 (ENSSMRG00000004592) ENSSMRG00000004627 GPR26 (ENSSMRG00000004632) CPXM2 (ENSSMRG00000004643) CHST15 (ENSSMRG00000004684) OAT (ENSSMRG00000004707) NKX1-2 (ENSSMRG00000004710) LHPP (ENSSMRG00000004798) Toxicofera ANCESTRAL SPECIES 13 ENSGT01050000244815.A.c.a.a.b.h.b ENSGT00940000155138.i.b.b ENSGT00940000162662.u ENSGT00950000182872.f.b.b ENSGT00940000153875.d.a.a ENSGT00940000156397.a.b ENSGT00940000161599 ENSGT00940000159269.g.b.b ENSGT00530000063801.b ENSGT00940000157783 ENSGT00940000167648 ENSGT00940000154715.b.k.b.a.b.b.b.a.a.c ENSGT00940000166296 ENSGT00910000144307 ENSGT00950000182932.A.b.b ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b ENSGT00940000161663 ENSGT01050000244828.b.k.a.a.a.a ENSGT01050000244828.b.l.a.a.b.a ENSGT00940000165513.b ENSGT01090000260086.C.a.b.c ENSGT00950000182788.a.b.b.a.a.a.b.a.a.a.a ENSGT00940000162974.e ENSGT01060000248581.B.db.b.a ENSGT01090000260086.C.a.a ENSGT01090000260086.C.a.b.d ENSGT01090000260045.C.e.a.b ENSGT01090000260024.A.a.a.b.b.a.a.a Lizard MODERN SPECIES 867 ENSACAG00000011292 ENSACAG00000024934 ENSACAG00000011085 ENSACAG00000025946 ENSACAG00000040614 ENSACAG00000011079 ENSACAG00000011059 ENSACAG00000044544 ENSACAG00000045059 ENSACAG00000023029 ENSACAG00000011044 ENSACAG00000029407 ENSACAG00000011023 ENSACAG00000036403 ENSACAG00000035155 ENSACAG00000034965 ##22 ENSACAG00000029080 ENSACAG00000011002 ENSACAG00000010990 ENSACAG00000023399 ENSACAG00000027540 ENSACAG00000010971 ENSACAG00000010956 ENSACAG00000010954 ENSACAG00000024209 ENSACAG00000027007 ENSACAG00000024155 ENSACAG00000026301 ENSACAG00000041224 ENSACAG00000010942 ENSACAG00000010940 Elapidae ANCESTRAL SPECIES 42 ENSGT00940000155138.i.b.b ENSGT00940000162662.u.f ENSGT00950000182872.f.b.b ENSGT00940000153875.d.a.a.a ENSGT00990000212138 ENSGT01030000234576.D.a.a.b.b.j ENSGT00940000156397.a.b ENSGT00940000161599 ENSGT00530000063801.b ENSGT00940000157783 ENSGT00940000154715.b.k.b.a.b.b.b.a.a.c.a ENSGT00940000162662.u.e ENSGT00940000166296 ENSGT00910000144307 ENSGT00950000182932.A.b.b ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b ENSGT00940000161663 ENSGT01050000244828.b.k.a.a.a.a.a.a ENSGT01050000244828.b.k.a.b.b.b.a.a.a.a.b.a ENSGT01050000244828.b.k.a.b.a.a ENSGT01050000244828.b.k.a.b.b.a.a.a.b.b.b ENSGT01050000244828.b.k.a.b.b.b.b ENSGT01050000244828.b.k.b.b.a.a.a ENSGT01050000244828.b.k.b.b.a.a.b ENSGT01050000244828.b.k.a.b.b.a.a.a.b.a.a ENSGT01050000244828.b.k.b.b.b ENSGT01050000244828.b.l.a.a.b.b.b ENSGT01050000244828.b.l.a.a.b.b.a ENSGT01050000244828.b.l.a.a.b.a ENSGT00940000165513.b Indian cobra MODERN SPECIES 337 ENSNNAG00000009652 ATF5 (ENSNNAG00000009641) LIG1 (ENSNNAG00000009492) ENSNNAG00000009458 ENSNNAG00000009439 ENSNNAG00000009379 ENSNNAG00000009359 ENSNNAG00000009324 ENSNNAG00000009260 ENSNNAG00000009214 ENSNNAG00000009112 ENSNNAG00000009079 ENSNNAG00000009051 ENSNNAG00000008994 NAT14 (ENSNNAG00000008956) ENSNNAG00000008943 ##22 SBK2 (ENSNNAG00000008843) ENSNNAG00000008813 ENSNNAG00000008792 ENSNNAG00000008784 ENSNNAG00000008765 ENSNNAG00000008752 ENSNNAG00000008725 ENSNNAG00000008711 ENSNNAG00000008687 ENSNNAG00000008671 ENSNNAG00000008592 ENSNNAG00000008580 ENSNNAG00000008560 ENSNNAG00000008545 ENSNNAG00000008527 Elapidae_a ANCESTRAL SPECIES 97 ENSGT00940000155138.i.b.b ENSGT00940000162662.u.f ENSGT00950000182872.f.b.b ENSGT00940000153875.d.a.a.a ENSGT00990000212138 ENSGT01030000234576.D.a.a.b.b.j ENSGT00940000156397.a.b.e ENSGT00940000161599 ENSGT00530000063801.b ENSGT00940000157783 ENSGT00940000154715.b.k.b.a.b.b.b.a.a.c.a ENSGT00940000162662.u.e ENSGT00940000166296 ENSGT00910000144307 ENSGT00950000182932.A.b.b ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b ENSGT00940000161663 ENSGT01050000244828.b.k.a.a.a.a.a.a ENSGT01050000244828.b.k.a.b.b.b.a.a.a.a.b.a ENSGT01050000244828.b.k.a.b.a.a ENSGT01050000244828.b.k.a.b.b.a.a.a.b.b.b ENSGT01050000244828.b.k.a.b.b.b.b ENSGT01050000244828.b.k.b.b.a.a.a ENSGT01050000244828.b.k.b.b.a.a.b ENSGT01050000244828.b.k.a.b.b.a.a.a.b.a.a ENSGT01050000244828.b.k.b.b.b ENSGT01050000244828.b.l.a.a.b.b.b ENSGT01050000244828.b.l.a.a.b.b.a ENSGT01050000244828.b.l.a.a.b.a ENSGT01090000260086.C.a.a Acanthophiinae ANCESTRAL SPECIES 82 ENSGT00940000162662.u.f ENSGT00950000182872.f.b.b ENSGT00940000153875.d.a.a.a ENSGT00990000212138 ENSGT01030000234576.D.a.a.b.b.j ENSGT00940000156397.a.b.e ENSGT00940000161599 ENSGT00530000063801.b ENSGT00940000157783 ENSGT00940000154715.b.k.b.a.b.b.b.a.a.c.a ENSGT00940000162662.u.e ENSGT00940000164475.a.a ENSGT00940000166296 ENSGT00910000144307 ENSGT00950000182932.A.b.b ENSGT00950000183145.A.a ##22 ENSGT00940000154852.b ENSGT00940000161663 ENSGT01050000244828.b.k.a.a.a.a.a.a ENSGT01050000244828.b.k.a.a.a.a.b ENSGT01050000244828.b.k.a.b.b.b.a.a.a.a.b.a ENSGT01050000244828.b.k.a.b.a.a ENSGT01050000244828.b.k.a.b.b.a.a.a.b.b.b ENSGT01050000244828.b.k.a.b.b.b.b ENSGT01050000244828.b.k.b.b.a.a.a ENSGT01050000244828.b.k.b.b.a.a.b ENSGT01050000244828.b.k.b.b.a.b ENSGT01050000244828.b.k.a.b.b.a.a.a.b.a.a ENSGT01050000244828.b.k.b.b.b ENSGT01050000244828.b.l.a.a.b.b.b ENSGT01050000244828.b.l.a.a.b.b.a Mainland tiger snake MODERN SPECIES 221 ENSNSUG00000012182 NDRG2 (ENSNSUG00000012181) ENSNSUG00000012180 ENSNSUG00000012179 ENSNSUG00000012178 ENSNSUG00000012176 ATF5 (ENSNSUG00000012175) LIG1 (ENSNSUG00000011994) ENSNSUG00000011992 ENSNSUG00000011991 ENSNSUG00000011990 ENSNSUG00000011989 ENSNSUG00000011988 ZNF628 (ENSNSUG00000011986) NAT14 (ENSNSUG00000011985) ENSNSUG00000011984 ##22 ENSNSUG00000011983 ENSNSUG00000011982 ENSNSUG00000011979 ENSNSUG00000011978 ENSNSUG00000011977 ENSNSUG00000011976 Eastern brown snake MODERN SPECIES 122 ENSPTXG00000010208 NDRG2 (ENSPTXG00000010205) TPPP2 (ENSPTXG00000010204) ENSPTXG00000010203 ENSPTXG00000010202 ENSPTXG00000010201 ENSPTXG00000010200 ATF5 (ENSPTXG00000010199) LIG1 (ENSPTXG00000009151) ENSPTXG00000009149 ENSPTXG00000009146 ENSPTXG00000009144 ENSPTXG00000009141 ZNF628 (ENSPTXG00000009139) NAT14 (ENSPTXG00000009138) ENSPTXG00000009137 ##22 ENSPTXG00000009136 SBK2 (ENSPTXG00000009134) ENSPTXG00000009131 ENSPTXG00000009129 ENSPTXG00000009128 ENSPTXG00000009127 ENSPTXG00000009120 ENSPTXG00000009118 ENSPTXG00000009117 ENSPTXG00000009116 ENSPTXG00000009113 ENSPTXG00000009112 ENSPTXG00000009111 ENSPTXG00000009110 ENSPTXG00000009109 Actinopterygii ANCESTRAL SPECIES 1194 ENSGT00950000183145.C ##22 ENSGT00950000183145.A.a ##22 Reedfish MODERN SPECIES polr1h (ENSECRG00000000374) ppp1r11 (ENSECRG00000000373) gtf2h4 (ENSECRG00000000372) sh3bp5la (ENSECRG00000000371) ilrun (ENSECRG00000000370) ENSECRG00000000369 GABBR1 (ENSECRG00000000368) ENSECRG00000000367 ENSECRG00000000366 ATP6V1G2 (ENSECRG00000000365) neu1 (ENSECRG00000000364) ENSECRG00000000363 ENSECRG00000000362 ##22 ENSECRG00000000361 ENSECRG00000000360 #25 ENSECRG00000000359 ##22 bag6l (ENSECRG00000000358) ENSECRG00000000357 ptges (ENSECRG00000000356) ENSECRG00000000355 ENSECRG00000000354 ENSECRG00000000353 ENSECRG00000000352 ENSECRG00000000351 vars1 (ENSECRG00000000350) ENSECRG00000000349 ENSECRG00000000348 ENSECRG00000000347 ENSECRG00000000346 ENSECRG00000000345 zgc:162193 (ENSECRG00000000344) Neopterygii ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Osteoglossocephalai ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Osteoglossiformes ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Asian bonytongue DUPLICATION Asian bonytongue DUPLICATION Asian bonytongue MODERN SPECIES 20 ENSSFOG00015028488 ETV6 (ENSSFOG00015010592) ENSSFOG00015010647 lrig3 (ENSSFOG00015010503) atp23 (ENSSFOG00015031983) rpap3 (ENSSFOG00015030819) ENSSFOG00015005081 ENSSFOG00015027594 ENSSFOG00015031648 ENSSFOG00015032830 ENSSFOG00015028347 ENSSFOG00015017243 ENSSFOG00015032787 ENSSFOG00015027127 ENSSFOG00015016638 ENSSFOG00015024250 ##22 ENSSFOG00015028790 ENSSFOG00015016825 ENSSFOG00015030791 ENSSFOG00015031669 ENSSFOG00015030329 ENSSFOG00015027147 ENSSFOG00015002038 nfyba (ENSSFOG00015002022) ENSSFOG00015002004 SLC41A2 (ENSSFOG00015001938) ttll12 (ENSSFOG00015001883) pex26 (ENSSFOG00015001864) itfg2 (ENSSFOG00015001816) ENSSFOG00015001734 ENSSFOG00015001610 Asian bonytongue MODERN SPECIES 20 lrig3 (ENSSFOG00015010503) ENSSFOG00015010647 ETV6 (ENSSFOG00015010592) ENSSFOG00015028488 zgc:165507 (ENSSFOG00015010553) lrig3 (ENSSFOG00015032543) atp23 (ENSSFOG00015032674) rpap3 (ENSSFOG00015010461) ENSSFOG00015010361 ENSSFOG00015024367 ENSSFOG00015024743 ENSSFOG00015031103 ##22 ENSSFOG00015024828 ENSSFOG00015033316 ENSSFOG00015030407 ENSSFOG00015031872 ##22 ENSSFOG00015032189 ENSSFOG00015028918 ENSSFOG00015027762 si:dkey-14d8.7 (ENSSFOG00015013829) mapk12b (ENSSFOG00015013781) ENSSFOG00015025380 mapk11 (ENSSFOG00015013508) ENSSFOG00015013443 ENSSFOG00015013400 ENSSFOG00015013380 selenoo1 (ENSSFOG00015013364) trabd (ENSSFOG00015028326) ENSSFOG00015029846 panx2 (ENSSFOG00015013318) cyp4v2b (ENSSFOG00015013275) Asian bonytongue DUPLICATION Asian bonytongue MODERN SPECIES 20 eps8a (ENSSFOG00015029836) ENSSFOG00015024510 ENSSFOG00015031078 ENSSFOG00015013867 ENSSFOG00015025940 RASSF8 (ENSSFOG00015026671) ENSSFOG00015011671 C11orf98 (ENSSFOG00015027202) lrp6 (ENSSFOG00015031283) borcs5 (ENSSFOG00015011808) crebl2 (ENSSFOG00015026854) gpr19 (ENSSFOG00015030532) eps8a (ENSSFOG00015011862) ENSSFOG00015007385 ENSSFOG00015027727 ENSSFOG00015026871 ##22 ENSSFOG00015026729 ##22 ENSSFOG00015024898 ENSSFOG00015024594 RASSF8 (ENSSFOG00015023901) kras (ENSSFOG00015023903) ENSSFOG00015029582 ENSSFOG00015023921 ENSSFOG00015031018 ENSSFOG00015023928 ENSSFOG00015010981 ENSSFOG00015028414 amdhd1 (ENSSFOG00015023930) hal (ENSSFOG00015023933) lta4h (ENSSFOG00015023940) elk3 (ENSSFOG00015023943) Asian bonytongue MODERN SPECIES 20 ENSSFOG00015024510 ENSSFOG00015031078 ENSSFOG00015013867 ENSSFOG00015025940 RASSF8 (ENSSFOG00015026671) ENSSFOG00015011671 C11orf98 (ENSSFOG00015027202) lrp6 (ENSSFOG00015031283) borcs5 (ENSSFOG00015011808) crebl2 (ENSSFOG00015026854) gpr19 (ENSSFOG00015030532) eps8a (ENSSFOG00015011862) ENSSFOG00015007385 ENSSFOG00015027727 ENSSFOG00015026871 ##22 ENSSFOG00015026729 ##22 ENSSFOG00015024898 ENSSFOG00015024594 RASSF8 (ENSSFOG00015023901) kras (ENSSFOG00015023903) ENSSFOG00015029582 ENSSFOG00015023921 ENSSFOG00015031018 ENSSFOG00015023928 ENSSFOG00015010981 ENSSFOG00015028414 amdhd1 (ENSSFOG00015023930) hal (ENSSFOG00015023933) lta4h (ENSSFOG00015023940) elk3 (ENSSFOG00015023943) cdk17 (ENSSFOG00015023946) Clupeocephala ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Euteleosteomorpha ANCESTRAL SPECIES 68 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a Protacanthopterygii DUPLICATION Protacanthopterygii DUPLICATION Protacanthopterygii ANCESTRAL SPECIES 67 ENSGT00950000183157.a.a.a.a ENSGT00950000182960.a.b ENSGT00940000160116.b ENSGT01090000260240 ENSGT00390000003070.a.a ENSGT00940000156691 ENSGT00390000017548.b.a ENSGT00940000161116.w.a ENSGT00390000007463 ENSGT00390000004428.a.a ENSGT00920000149199 ENSGT01080000257365.a.c ENSGT01030000234586.B.a.a.b ENSGT00940000157836.a ENSGT00950000182983.A.a.a.a ENSGT00950000183145.A.a.m.a ##22 ENSGT00950000183145.B.a.a.b ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00940000160377.g.a ENSGT00390000007688.b ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b.c ENSGT00390000011987 ENSGT01050000244879.a.b.f Northern pike MODERN SPECIES 10 ENSELUG00000013788 BAHCC1 (ENSELUG00000013763) ENSELUG00000013756 HID1 (ENSELUG00000029719) OTOP2 (ENSELUG00000013719) USH1G (ENSELUG00000013709) ENSELUG00000013690 ENSELUG00000013658 zgc:112148 (ENSELUG00000025954) ENSELUG00000013617 ENSELUG00000013605 ENSELUG00000013587 KCNJ2 (ENSELUG00000013572) MAP2K6 (ENSELUG00000013563) BTBD17 (ENSELUG00000013524) ENSELUG00000025793 ##22 ENSELUG00000013514 ##22 ENSELUG00000013486 trub1 (ENSELUG00000000502) STUB1 (ENSELUG00000013462) JMJD8 (ENSELUG00000013430) tufm (ENSELUG00000013410) hspbp1 (ENSELUG00000034506) tmem86b (ENSELUG00000013383) aspdh (ENSELUG00000013356) gys1 (ENSELUG00000013344) pold1 (ENSELUG00000013313) ENSELUG00000024884 zgc:55558 (ENSELUG00000013260) SLC17A7 (ENSELUG00000013207) ENSELUG00000013148 Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000183145.A.a.m.b ##22 Salmoninae ANCESTRAL SPECIES ENSGT00950000183145.A.a.m.b ##22 Salmoninae_a ANCESTRAL SPECIES ENSGT00950000183145.A.a.m.b ##22 Salmo ANCESTRAL SPECIES ENSGT00950000183145.A.a.m.b ##22 Atlantic salmon MODERN SPECIES 22 ENSSSAG00000087582 ENSSSAG00000088069 ENSSSAG00000113895 ENSSSAG00000105389 ENSSSAG00000098488 gbgt1 (ENSSSAG00000055156) ENSSSAG00000055161 ENSSSAG00000114204 abi3a (ENSSSAG00000055178) ENSSSAG00000055194 mpp2a (ENSSSAG00000115489) pyya (ENSSSAG00000106078) HSP30 (ENSSSAG00000055309) rarab (ENSSSAG00000055321) ENSSSAG00000055478 ##22 ENSSSAG00000087633 ##22 ENSSSAG00000115730 psd3 (ENSSSAG00000003553) ENSSSAG00000096416 ENSSSAG00000003600 ENSSSAG00000109575 ENSSSAG00000006759 ENSSSAG00000003820 ENSSSAG00000085080 ENSSSAG00000089054 ENSSSAG00000003916 ENSSSAG00000097020 ENSSSAG00000002431 ENSSSAG00000004103 prr15la (ENSSSAG00000109719) copz2 (ENSSSAG00000096429) Oncorhynchus ANCESTRAL SPECIES 33 ENSGT00970000197550.A.a ENSGT00510000050089.a.a.p.b ENSGT00970000197550.B ENSGT00510000050089.a.a.p.a ENSGT00510000050089.a.a.o ENSGT00950000182858.A.b.b.g.a.i.c.a.c ENSGT00950000182858.A.b.b.g.a.i.c.a.d ENSGT00940000157746.f ENSGT00390000004038 ENSGT00530000063991.a.a ENSGT00940000154811.A.m.a ENSGT00940000155348.B.c.d ENSGT00940000160643.i.d ENSGT01050000245366.a ENSGT00940000165576.a.b.e.a ENSGT00950000183145.A.a.m.b ##22 ENSGT00940000154360.B.b ENSGT00940000153653.a.a.o ENSGT00390000017328.a.a.l ENSGT00940000175578.a.a ENSGT00940000158833.a.a.c ENSGT00940000156584.e.b.d.a ENSGT01100000263525.b.a.l ENSGT00390000006679.b.l ENSGT01030000234646.B.a.a.a.a.b.e ENSGT00940000153704.B.d.b.a.a ENSGT00940000157439.a.c ENSGT00940000154534.b.a.j ENSGT00390000004405.b.c ENSGT00950000182892.a.b.a.b.b.d ENSGT00940000154152.b.a.b Oncorhynchus_a ANCESTRAL SPECIES 42 ENSGT00510000050089.a.a.p.a ENSGT00510000050089.a.a.o ENSGT00950000182858.A.b.b.g.a.i.c.a.c ENSGT00950000182858.A.b.b.g.a.i.c.a.d ENSGT00940000157746.f ENSGT00390000004038 ENSGT00530000063991.a.a ENSGT00940000154811.A.m.a ENSGT00940000155348.B.c.d ENSGT00940000160643.i.d ENSGT01050000245366.a ENSGT00940000165576.a.b.e.a ENSGT00950000183145.A.a.m.b ##22 ENSGT00950000183145.B.a.a.a.b.b.b ##22 ENSGT00940000154360.B.b ENSGT00940000153653.a.a.o ENSGT00390000017328.a.a.l ENSGT00940000175578.a.a ENSGT00940000158833.a.a.c ENSGT00940000156584.e.b.d.a ENSGT01100000263525.b.a.l ENSGT00390000006679.b.l ENSGT01030000234646.B.a.a.a.a.b.e ENSGT00940000153704.B.d.b.a.a ENSGT00940000157439.a.c ENSGT00940000154534.b.a.j ENSGT00390000004405.b.d.b.a.b ENSGT00950000182892.a.b.a.b.b.d Coho salmon MODERN SPECIES 26 ENSOKIG00005013771 ENSOKIG00005013790 ENSOKIG00005013834 ENSOKIG00005013849 ENSOKIG00005013870 ENSOKIG00005013884 GBGT1 (ENSOKIG00005013905) ITGA3 (ENSOKIG00005001715) ccdc103 (ENSOKIG00005001757) FAM187A (ENSOKIG00005001760) abi3a (ENSOKIG00005001762) mpp2a (ENSOKIG00005001791) pyya (ENSOKIG00005001834) ENSOKIG00005001847 rarab (ENSOKIG00005001924) ENSOKIG00005002125 ##22 ENSOKIG00005002162 ##22 ENSOKIG00005002185 ENSOKIG00005002224 ENSOKIG00005002298 ENSOKIG00005002309 PPP1R9B (ENSOKIG00005002344) col1a1a (ENSOKIG00005002517) ENSOKIG00005002573 ENSOKIG00005002598 pdk2b (ENSOKIG00005002702) ENSOKIG00005002828 prr15la (ENSOKIG00005002918) copz2 (ENSOKIG00005002937) nfe2l1a (ENSOKIG00005002972) ENSOKIG00005002979 Northern pike MODERN SPECIES 10 copz2 (ENSELUG00000014620) prr15la (ENSELUG00000014511) ENSELUG00000014464 TBKBP1 (ENSELUG00000014401) pdk2b (ENSELUG00000014339) nags (ENSELUG00000014289) ENSELUG00000014268 ENSELUG00000014247 col1a1a (ENSELUG00000014218) PPP1R9B (ENSELUG00000014166) ENSELUG00000014127 ENSELUG00000032826 psmd3 (ENSELUG00000014100) ENSELUG00000031826 ENSELUG00000014026 ##22 ENSELUG00000013984 ##22 rarab (ENSELUG00000013907) hspb9 (ENSELUG00000013852) pyya (ENSELUG00000013825) mpp2a (ENSELUG00000013743) ENSELUG00000013682 abi3a (ENSELUG00000013651) FAM187A (ENSELUG00000013593) ccdc103 (ENSELUG00000013582) ITGA3 (ENSELUG00000013550) ENSELUG00000028821 ENSELUG00000013465 ENSELUG00000013429 ENSELUG00000025363 ifnphi1 (ENSELUG00000026570) ifnphi1 (ENSELUG00000013358) Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000183145.A.a.n ##22 Salmoninae ANCESTRAL SPECIES 613 ENSGT00510000050089.a.a.o ENSGT00510000050089.b.e.b.a ENSGT00950000182858.A.b.b.g.a.i.d ENSGT00940000157746.f ENSGT00390000004038 ENSGT00530000063991.a.a ENSGT00940000154811.A.m.a ENSGT00940000176945 ENSGT00940000154811.A.m.b ENSGT00940000163871.b ENSGT00940000155348.B.c.d ENSGT00940000160643.i.d ENSGT01050000245366 ENSGT00940000165576.a.b.e ENSGT00950000183145.A.a.n ##22 Salmoninae_a ANCESTRAL SPECIES 77 ENSGT00510000050089.b.e.a ENSGT00940000179141.a.a ENSGT00970000197550.B ENSGT00510000050089.a.a.p ENSGT00510000050089.a.a.o ENSGT00950000182858.A.b.b.g.a.i.c.a ENSGT00940000157746.f ENSGT00390000004038 ENSGT00530000063991.a.a ENSGT00940000154811.A.m.a ENSGT00940000155348.B.c.d ENSGT00940000160643.i.d ENSGT01050000245366.a ENSGT00940000165576.a.b.e.a ENSGT00950000183145.A.a.n ##22 ENSGT00940000154360.B.b ENSGT00940000153653.a.a.o ENSGT00390000017328.a.a.l ENSGT00940000175578.a.b.b ENSGT00940000175578.a.a ENSGT00940000158833.a.a.c ENSGT00940000156584.e.b.d.a ENSGT01100000263525.b.a.l ENSGT00390000006679.b.l ENSGT01030000234646.B.a.a.a.a.b.e ENSGT00940000153704.B.d.b.a.a ENSGT00940000157439.a.c ENSGT00940000154534.b.a.j ENSGT00390000004405.b.c ENSGT00950000182892.a.b.a.b.b.d Salmo ANCESTRAL SPECIES 55 ENSGT00390000004038.j ENSGT00530000063991.a.a ENSGT00940000154811.A.m.a ENSGT00940000163871.b.a ENSGT00940000155348.B.c.d ENSGT00940000160643.i.d ENSGT01050000245366.a ENSGT00940000165576.a.b.e.a ENSGT00950000183145.A.a.n ##22 ENSGT00940000154360.B.b ENSGT00940000153653.a.a.o ENSGT00940000175578.a.b.b ENSGT00940000175578.a.a ENSGT00940000158833.a.a.c ENSGT00940000156584.e.b.d.a ENSGT01100000263525.b.a.l ENSGT00390000006679.b.l ENSGT01030000234646.B.a.a.a.a.b.e ENSGT00940000153704.B.d.b.b ENSGT00940000157439.a.c ENSGT00940000154534.b.a.j ENSGT00390000004405.b.c ENSGT00950000182892.a.b.a.b.b.d ENSGT00940000154152.b.a.b Atlantic salmon MODERN SPECIES 22 ENSSSAG00000097989 ENSSSAG00000087582 ENSSSAG00000088069 ENSSSAG00000113895 ENSSSAG00000105389 ENSSSAG00000098488 gbgt1 (ENSSSAG00000055156) ENSSSAG00000055161 ENSSSAG00000114204 abi3a (ENSSSAG00000055178) ENSSSAG00000055194 mpp2a (ENSSSAG00000115489) pyya (ENSSSAG00000106078) HSP30 (ENSSSAG00000055309) rarab (ENSSSAG00000055321) ENSSSAG00000055478 ##22 ENSSSAG00000087633 ##22 ENSSSAG00000115730 psd3 (ENSSSAG00000003553) ENSSSAG00000096416 ENSSSAG00000003600 ENSSSAG00000109575 ENSSSAG00000006759 ENSSSAG00000003820 ENSSSAG00000085080 ENSSSAG00000089054 ENSSSAG00000003916 ENSSSAG00000097020 ENSSSAG00000002431 ENSSSAG00000004103 prr15la (ENSSSAG00000109719) Acanthomorphata ANCESTRAL SPECIES 338 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b Cod DUPLICATION Cod MODERN SPECIES 13 ENSGMOG00000025678 ENSGMOG00000009960 ENSGMOG00000009969 ENSGMOG00000035608 sox7 (ENSGMOG00000022893) pinx1 (ENSGMOG00000010002) tdh (ENSGMOG00000010028) mtmr9 (ENSGMOG00000010038) xkr6b (ENSGMOG00000010050) ccm2 (ENSGMOG00000010055) fam167ab (ENSGMOG00000036214) ENSGMOG00000027198 ENSGMOG00000010093 ENSGMOG00000010205 #25 ENSGMOG00000032655 ENSGMOG00000025961 ##22 ENSGMOG00000030006 ENSGMOG00000023601 ENSGMOG00000033494 ism2b (ENSGMOG00000001750) sptlc2b (ENSGMOG00000001727) snw1 (ENSGMOG00000001706) nrxn3b (ENSGMOG00000015946) CEP128 (ENSGMOG00000015925) tshr (ENSGMOG00000015887) gtf2a1 (ENSGMOG00000015861) ches1 (ENSGMOG00000022839) kcnk13b (ENSGMOG00000027682) psmc1b (ENSGMOG00000009350) ENSGMOG00000036333 ENSGMOG00000009332 Cod MODERN SPECIES 21 ENSGMOG00000031099 ENSGMOG00000032689 ENSGMOG00000001572 ENSGMOG00000003142 ACADM (ENSGMOG00000002386) ENSGMOG00000001555 ST6GALNAC3 (ENSGMOG00000036570) ENSGMOG00000023243 pigk (ENSGMOG00000014349) ak5 (ENSGMOG00000014379) zzz3 (ENSGMOG00000003250) usp33 (ENSGMOG00000003277) miga1 (ENSGMOG00000003335) fubp1 (ENSGMOG00000003370) ENSGMOG00000032110 ENSGMOG00000022334 ##22 slc25a24l (ENSGMOG00000011914) dnajb4 (ENSGMOG00000036582) ENSGMOG00000024997 gipc2 (ENSGMOG00000011921) txndc12 (ENSGMOG00000011925) ENSGMOG00000011928 ENSGMOG00000011934 ENSGMOG00000011946 ENSGMOG00000032122 ENSGMOG00000018990 ENSGMOG00000018166 penka (ENSGMOG00000036334) ENSGMOG00000029867 ENSGMOG00000000767 ENSGMOG00000027120 Cod MODERN SPECIES 21 ENSGMOG00000018632 ENSGMOG00000018593 ENSGMOG00000018566 ENSGMOG00000018551 ENSGMOG00000034805 ENSGMOG00000018531 ENSGMOG00000031815 ENSGMOG00000027783 ENSGMOG00000026533 ENSGMOG00000018506 ENSGMOG00000012123 ENSGMOG00000012121 ENSGMOG00000022941 ENSGMOG00000023324 ENSGMOG00000035848 ##22 ENSGMOG00000022448 ##22 ENSGMOG00000025397 ##22 ENSGMOG00000024875 ##22 ENSGMOG00000013289 ENSGMOG00000008152 ENSGMOG00000000536 ENSGMOG00000013992 ENSGMOG00000014041 ENSGMOG00000014082 ENSGMOG00000002104 ENSGMOG00000014218 ENSGMOG00000016516 ENSGMOG00000024488 ENSGMOG00000014109 ENSGMOG00000035897 ENSGMOG00000023916 Euacanthomorphacea ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Percomorphaceae ANCESTRAL SPECIES 7 ENSGT00390000010057 ENSGT00940000160830 ENSGT00940000153615.a.a.a ENSGT00730000114829 ENSGT00950000182805.a.a.a.a.b ENSGT00940000160409 ENSGT00940000156846 ENSGT00390000012992 ENSGT00950000183133.d ENSGT01030000234629.B ENSGT00940000158954 ENSGT00940000164475 ENSGT00940000165576.a.b ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00390000007688.b ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 ENSGT00940000162108 #25 ENSGT00510000050141.a ENSGT00950000182846.a.a.a.a.b ENSGT00940000160260 ENSGT00390000001958 ENSGT00940000158169.b ENSGT00940000157663 ENSGT00940000154679 ENSGT00950000183011.d.c Percomorphaceae_B ANCESTRAL SPECIES 6 ENSGT00940000157635 ENSGT00390000010057 ENSGT00940000160830 ENSGT00940000153615.a.a.a ENSGT00730000114829 ENSGT00950000182805.a.a.a.a.b ENSGT00940000160409 ENSGT00940000156846 ENSGT00390000012992 ENSGT00950000183133.d ENSGT01030000234629.B ENSGT00940000158954 ENSGT00940000164475 ENSGT00940000163299.B.b.b.g.b ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 ENSGT00940000162108 #25 ENSGT00510000050141.a ENSGT00950000182846.a.a.a.a.b ENSGT00940000160260 ENSGT00390000001958 ENSGT00940000158169.b ENSGT00940000157663 ENSGT00940000154679 ENSGT00950000183011.d.c ENSGT00940000158399 ENSGT00940000153567.b.b Ovalentaria ANCESTRAL SPECIES 102 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 ENSGT00940000156038.a.a.d.a.i.b Ovalentaria_B ANCESTRAL SPECIES 4 ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a.i.a ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a.j ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a Cichlidae ANCESTRAL SPECIES 3 ENSGT01050000244894.a.a.a.b ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a Pseudocrenilabrinae ANCESTRAL SPECIES 3 ENSGT00390000015892.a ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.a ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a Pseudocrenilabrinae_A ANCESTRAL SPECIES 5 ENSGT00390000015892.a ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.a ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a Haplochromini ANCESTRAL SPECIES 3 ENSGT00390000015892.a ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00940000156038.a.a.d.a.j ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.a ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a Haplochromini_A ANCESTRAL SPECIES 2 ENSGT01050000244894.b.b.d.a ENSGT00390000015892.a ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a P. nyererei MODERN SPECIES 360 TMC8 (ENSPNYG00000002456) TMC6 (ENSPNYG00000002422) NOTUM (ENSPNYG00000002336) aspscr1 (ENSPNYG00000002321) ENSPNYG00000002307 ENSPNYG00000002275 ENSPNYG00000002243 MAFG (ENSPNYG00000002228) ENSPNYG00000002215 SIRT7 (ENSPNYG00000002181) pcyt2 (ENSPNYG00000002121) gnav1 (ENSPNYG00000002087) npb (ENSPNYG00000002038) sgsh (ENSPNYG00000002001) slc26a11 (ENSPNYG00000001883) ENSPNYG00000001850 ##22 ENSPNYG00000001825 ##22 ENSPNYG00000001814 nanos3 (ENSPNYG00000001788) CC2D1A (ENSPNYG00000001590) mri1 (ENSPNYG00000001542) zgc:136864 (ENSPNYG00000001528) ENSPNYG00000001504 ENSPNYG00000001464 khsrp (ENSPNYG00000001374) DCAF15 (ENSPNYG00000001330) RFX1 (ENSPNYG00000001317) rln3b (ENSPNYG00000001301) TNPO2 (ENSPNYG00000001235) NHERF2 (ENSPNYG00000001179) NTHL1 (ENSPNYG00000001147) Haplochromini_B ANCESTRAL SPECIES 23 ENSGT00390000015892.a ENSGT00940000156853 ENSGT00940000153212.p ENSGT00950000182933.A.a.b ENSGT00950000183044.a.a.a.b ENSGT00940000160070.b.c.b ENSGT00390000004090 ENSGT00940000159703 ENSGT00550000075065.b ENSGT00940000164753.b ENSGT00940000158204.d ENSGT00390000013080 ENSGT01070000253775.b ENSGT00950000183145.B.a.a.b.e.b ##22 ENSGT00950000183145.B.a.a.b.f.e.a.b ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f.e.a.a ##22 ENSGT01100000263525.a.b.a.a ENSGT00940000177102 ENSGT00950000183135.A.b ENSGT00390000009595.b ENSGT00390000013732 ENSGT00390000011740 ENSGT00940000161004 ENSGT00940000158786 ENSGT00940000156051.c.b ENSGT00390000011987 ENSGT01050000244879.a.b.f ENSGT00940000154396.b.a.a.b ENSGT00940000156708.a.a ENSGT00950000182849.B.c.a.a Zebra mbuna MODERN SPECIES 1109 NOTUM (ENSMZEG00005008014) aspscr1 (ENSMZEG00005007985) ENSMZEG00005007980 ENSMZEG00005007974 ENSMZEG00005007964 MAFG (ENSMZEG00005007955) ENSMZEG00005007948 SIRT7 (ENSMZEG00005007936) pcyt2 (ENSMZEG00005007912) gnav1 (ENSMZEG00005007895) npb (ENSMZEG00005007885) sgsh (ENSMZEG00005007867) slc26a11 (ENSMZEG00005007858) ENSMZEG00005007843 ENSMZEG00005007755 ##22 ENSMZEG00005007722 ##22 ENSMZEG00005007712 ##22 ENSMZEG00005007707 ENSMZEG00005007701 nanos3 (ENSMZEG00005007690) CC2D1A (ENSMZEG00005007673) mri1 (ENSMZEG00005007657) zgc:136864 (ENSMZEG00005007631) ENSMZEG00005007622 ENSMZEG00005007598 DCAF15 (ENSMZEG00005007530) RFX1 (ENSMZEG00005007468) rln3b (ENSMZEG00005007510) TNPO2 (ENSMZEG00005007408) NHERF2 (ENSMZEG00005007390) NTHL1 (ENSMZEG00005007375) Nile tilapia DUPLICATION Nile tilapia DUPLICATION Nile tilapia MODERN SPECIES 18 TMC6 (ENSONIG00000018785) NOTUM (ENSONIG00000018783) aspscr1 (ENSONIG00000018780) ENSONIG00000040220 ENSONIG00000031715 ENSONIG00000018774 MAFG (ENSONIG00000032504) ENSONIG00000025578 SIRT7 (ENSONIG00000017759) pcyt2 (ENSONIG00000017756) npb (ENSONIG00000027286) gnav1 (ENSONIG00000017752) sgsh (ENSONIG00000017748) slc26a11 (ENSONIG00000017745) ENSONIG00000017739 ##22 ENSONIG00000028581 ##22 ENSONIG00000039217 ENSONIG00000026626 nos (ENSONIG00000020588) CC2D1A (ENSONIG00000017736) mri1 (ENSONIG00000017732) zgc:136864 (ENSONIG00000043085) ENSONIG00000041822 ENSONIG00000017723 khsrp (ENSONIG00000017713) DCAF15 (ENSONIG00000017709) RFX1 (ENSONIG00000028286) rln3b (ENSONIG00000017708) TNPO2 (ENSONIG00000017706) ENSONIG00000028869 ENSONIG00000016474 Nile tilapia MODERN SPECIES 16 smarce1 (ENSONIG00000006293) ENSONIG00000006299 mpp2a (ENSONIG00000006302) pyya (ENSONIG00000038015) ENSONIG00000006308 ENSONIG00000031552 ##22 ENSONIG00000027337 ##22 ENSONIG00000031965 rarab (ENSONIG00000006314) ENSONIG00000034800 ENSONIG00000036608 ENSONIG00000030584 ##22 ENSONIG00000037795 ENSONIG00000034707 ENSONIG00000037062 ENSONIG00000030607 ##22 ENSONIG00000039250 ENSONIG00000030523 ENSONIG00000040970 ENSONIG00000032352 ENSONIG00000006333 ENSONIG00000006334 ENSONIG00000034573 TANC2 (ENSONIG00000006337) cyb561 (ENSONIG00000006341) HDAC5 (ENSONIG00000006345) pex12 (ENSONIG00000006361) ENSONIG00000006364 ENSONIG00000035250 ENSONIG00000032268 ENSONIG00000034782 Nile tilapia MODERN SPECIES 21 dph2 (ENSONIG00000004907) rgs9bp (ENSONIG00000004910) ENSONIG00000032235 ENSONIG00000034682 zgc:56231 (ENSONIG00000004912) ENSONIG00000017964 pigm (ENSONIG00000017965) ENSONIG00000017966 ANKS6 (ENSONIG00000017967) RPS20 (ENSONIG00000030586) ENSONIG00000037721 ENSONIG00000028889 si:ch211-196f5.2 (ENSONIG00000036995) ENSONIG00000037226 ENSONIG00000003570 ENSONIG00000036524 ##22 ENSONIG00000036124 ENSONIG00000040698 ENSONIG00000037145 ENSONIG00000039146 ENSONIG00000028720 ENSONIG00000035480 fen1 (ENSONIG00000004933) tm9sf1 (ENSONIG00000004935) ENSONIG00000034204 ENSONIG00000035182 ENSONIG00000028630 ENSONIG00000041393 ENSONIG00000016845 ENSONIG00000033417 ENSONIG00000042891 Atherinomorphae ANCESTRAL SPECIES 96 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 Oryzias ANCESTRAL SPECIES 262 ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 Oryzias_a ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Chinese medaka MODERN SPECIES 79 ENSOSIG00000000636 ##22 ENSOSIG00000000634 ##22 ENSOSIG00000000632 ##22 Oryzias_b ANCESTRAL SPECIES 16 ENSGT00440000037780.a ENSGT00940000156232.b.f ENSGT00940000156625 ENSGT00940000156227.f ENSGT00940000164184 ENSGT01090000259987.a.b.d.b.b ENSGT00940000157169.c ENSGT00950000183214.a.a.a.b ENSGT00940000154926 ENSGT00940000154453.a.b.b.e.a ENSGT01090000260098.B.b ENSGT00940000161191.A.a.a ENSGT00940000158085.b.a ENSGT00940000155002.b.e.a ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 ENSGT00940000157252.m.b ENSGT00930000150950.a.c ENSGT00390000008527 ENSGT00940000154968.g ENSGT00940000154968.h.a ENSGT00950000182992.a.b.b ENSGT00940000154635.a ENSGT00520000062345 ENSGT00390000005651.m ENSGT00940000154835.C.lb.a.p ENSGT00940000164379.e.b.b ENSGT00940000154835.C.lb.a.o ENSGT00390000004912 ENSGT00940000154835.C.lb.b ENSGT00390000017728 Indian medaka MODERN SPECIES 14 ODAD2 (ENSOMEG00000020718) mkxa (ENSOMEG00000020619) rab18a (ENSOMEG00000020605) itgb1a (ENSOMEG00000020566) nrp1a (ENSOMEG00000020413) ENSOMEG00000020234 ENSOMEG00000020201 CUL2 (ENSOMEG00000020087) CCNY (ENSOMEG00000019995) GJD4 (ENSOMEG00000019900) fzd8a (ENSOMEG00000019892) klf6a (ENSOMEG00000019878) PFKP (ENSOMEG00000019824) ENSOMEG00000019655 ENSOMEG00000019645 ENSOMEG00000019614 ##22 ENSOMEG00000019574 ENSOMEG00000019559 ##22 ADARB2 (ENSOMEG00000019523) wdr37 (ENSOMEG00000019446) idi1 (ENSOMEG00000019396) cpne3 (ENSOMEG00000019357) cpne3 (ENSOMEG00000000778) rmdn1 (ENSOMEG00000019188) WWP1 (ENSOMEG00000019136) ENSOMEG00000019027 snx16 (ENSOMEG00000019013) ENSOMEG00000018983 ENSOMEG00000018953 polr2d (ENSOMEG00000018915) serpinb1l3 (ENSOMEG00000000497) Cyprinodontiformes ANCESTRAL SPECIES 106 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 Aplocheiloidei ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Turquoise killifish MODERN SPECIES 1619 fkbp11 (ENSNFUG00015010413) arf3b (ENSNFUG00015010473) ERBB3 (ENSNFUG00015010558) PA2G4A (ENSNFUG00015011992) crbn (ENSNFUG00015012717) OLA.7339 (ENSNFUG00015012776) VHL (ENSNFUG00015012781) tatdn2 (ENSNFUG00015012793) ccdc174 (ENSNFUG00015012802) ENSNFUG00015012850 prkcda (ENSNFUG00015012984) RFT1 (ENSNFUG00015014367) mustn1a (ENSNFUG00015014567) RUVBL1 (ENSNFUG00015014618) EEFSEC (ENSNFUG00015014664) ENSNFUG00015014697 ##22 ENSNFUG00015014705 GATA2 (ENSNFUG00015014731) ENSNFUG00015014750 ENSNFUG00015014771 ENSNFUG00015014782 ENSNFUG00015014903 arpc4 (ENSNFUG00015014909) pfkfb4b (ENSNFUG00015015017) Nfu_g_1_021580 (ENSNFUG00015016247) ENSNFUG00015016404 ENSNFUG00015016418 SEC61A1 (ENSNFUG00015016424) IP6K2 (ENSNFUG00015016466) Nfu_g_1_021296 (ENSNFUG00015016474) ENSNFUG00015016475 Cyprinodontoidei ANCESTRAL SPECIES 140 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 Poeciliinae ANCESTRAL SPECIES 83 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 Platyfish MODERN SPECIES krt18a.1 (ENSXMAG00000026726) krt18a.2 (ENSXMAG00000016246) ENSXMAG00000026206 tmem106c (ENSXMAG00000027733) ENSXMAG00000016305 sars1 (ENSXMAG00000016138) ENSXMAG00000029856 fam50a (ENSXMAG00000023736) cav4b (ENSXMAG00000016311) ARHGAP4 (ENSXMAG00000016317) zgc:103759 (ENSXMAG00000016353) gss (ENSXMAG00000016356) pim1 (ENSXMAG00000021393) ENSXMAG00000026776 ENSXMAG00000027187 ##22 ENSXMAG00000028759 ##22 ENSXMAG00000025836 ENSXMAG00000016409 ENSXMAG00000020962 ENSXMAG00000030095 USP19 (ENSXMAG00000016414) lamb2 (ENSXMAG00000016442) ENSXMAG00000016516 ENSXMAG00000016526 ENSXMAG00000028546 TNNC2 (ENSXMAG00000028434) tnnc2.2 (ENSXMAG00000025748) taf13 (ENSXMAG00000019607) ENSXMAG00000025204 SNIP1 (ENSXMAG00000023091) dpm1 (ENSXMAG00000006459) Poecilia ANCESTRAL SPECIES 181 ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 Guppy MODERN SPECIES 460 USP7 (ENSPREG00000019533) ENSPREG00000019498 dctn5 (ENSPREG00000019465) ndufab1b (ENSPREG00000019420) TNRC6A (ENSPREG00000019388) ENSPREG00000019372 ENSPREG00000019360 ENSPREG00000019347 PRKCB (ENSPREG00000019286) CLEC16A (ENSPREG00000019220) dexi (ENSPREG00000019195) ENSPREG00000019107 nubp1 (ENSPREG00000019077) emp2 (ENSPREG00000019065) ENSPREG00000019049 ENSPREG00000019029 ##22 ENSPREG00000018958 ENSPREG00000018934 ##22 ENSPREG00000018930 ENSPREG00000018912 ENSPREG00000018904 ENSPREG00000018893 GRIN2A (ENSPREG00000018839) ENSPREG00000018806 adsl (ENSPREG00000018777) ENSPREG00000018760 atf4b (ENSPREG00000018746) ENSPREG00000018711 mief1 (ENSPREG00000018688) ENSPREG00000018679 ENSPREG00000018669 NAME_6 ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Sailfin molly MODERN SPECIES 3485 ENSPLAG00000011654 ENSPLAG00000011664 ##22 ENSPLAG00000011679 ##22 Amazon molly MODERN SPECIES 49 ENSPFOG00000024603 ##22 ENSPFOG00000006741 Percomorphaceae_C ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Eupercaria ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Tetraodontidae ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Fugu MODERN SPECIES 8 TMC6 (ENSTRUG00000012500) NOTUM (ENSTRUG00000012438) NOTUM (ENSTRUG00000023602) aspscr1 (ENSTRUG00000012353) ENSTRUG00000012323 ENSTRUG00000012095 MAFG (ENSTRUG00000026437) ENSTRUG00000026592 SIRT7 (ENSTRUG00000011956) pcyt2 (ENSTRUG00000011781) gnav1 (ENSTRUG00000011603) npb (ENSTRUG00000011590) sgsh (ENSTRUG00000011472) slc26a11 (ENSTRUG00000011404) ENSTRUG00000021974 ##22 ENSTRUG00000011378 ##22 ENSTRUG00000028310 ENSTRUG00000027444 ##22 ENSTRUG00000023370 nanos3 (ENSTRUG00000027071) ENSTRUG00000019953 ENSTRUG00000011003 mri1 (ENSTRUG00000010929) c17h19orf53 (ENSTRUG00000025986) ENSTRUG00000020299 ENSTRUG00000010552 khsrp (ENSTRUG00000026489) RFX1 (ENSTRUG00000010058) DCAF15 (ENSTRUG00000010245) TNPO2 (ENSTRUG00000009453) ENSTRUG00000024458 Percomorphaceae_D ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Carangaria ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Carangaria_A ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Barramundi perch MODERN SPECIES 222 ENSLCAG00010013980 ENSLCAG00010013983 ##22 ENSLCAG00010013984 pyya (ENSLCAG00010013986) mpp2a (ENSLCAG00010013988) ENSLCAG00010013991 smarce1 (ENSLCAG00010013992) ENSLCAG00010013994 rpl23 (ENSLCAG00010014003) ENSLCAG00010014028 fbxl16 (ENSLCAG00010014037) smg1 (ENSLCAG00010014104) hao1 (ENSLCAG00010014381) mettl22 (ENSLCAG00010014394) abat (ENSLCAG00010014427) rcn3 (ENSLCAG00010014539) nosip (ENSLCAG00010014549) Pleuronectoidei ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Turbot MODERN SPECIES 10 ENSSMAG00000017671 ENSSMAG00000017634 ENSSMAG00000036838 ENSSMAG00000017604 ENSSMAG00000017590 ENSSMAG00000025161 ENSSMAG00000017480 ENSSMAG00000017412 ENSSMAG00000017402 ENSSMAG00000017392 ENSSMAG00000017319 cyb561 (ENSSMAG00000017285) ENSSMAG00000034880 ENSSMAG00000017154 rarab (ENSSMAG00000017131) ENSSMAG00000017113 ##22 ENSSMAG00000035162 ENSSMAG00000017097 mpp2a (ENSSMAG00000017068) ENSSMAG00000017059 ENSSMAG00000036973 ENSSMAG00000017031 ENSSMAG00000017019 ENSSMAG00000016939 ENSSMAG00000016903 ENSSMAG00000016817 timm29 (ENSSMAG00000016806) yipf2 (ENSSMAG00000016778) carm1 (ENSSMAG00000016701) ENSSMAG00000026526 clpp (ENSSMAG00000024132) Anabantaria ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Anabantoidei ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Climbing perch MODERN SPECIES 21 ENSATEG00000011897 ENSATEG00000011890 ENSATEG00000011778 ENSATEG00000029173 ENSATEG00000011696 ENSATEG00000011672 ENSATEG00000011659 ENSATEG00000011624 cyb561 (ENSATEG00000011593) ENSATEG00000011514 ENSATEG00000011486 ENSATEG00000011472 ENSATEG00000030018 ##22 ENSATEG00000026298 ENSATEG00000011392 ENSATEG00000025727 ##22 ENSATEG00000025949 ##22 ENSATEG00000010928 ENSATEG00000029972 ENSATEG00000030080 #25 ENSATEG00000029291 ENSATEG00000025514 ENSATEG00000025452 #25 ENSATEG00000028299 ENSATEG00000010685 ENSATEG00000010638 ENSATEG00000010394 ENSATEG00000010369 ENSATEG00000010285 ENSATEG00000025703 ENSATEG00000010281 Otomorpha ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Clupeiformes ANCESTRAL SPECIES ENSGT00950000183145.A.a ##22 Atlantic herring MODERN SPECIES 18 BPTF (ENSCHAG00000021387) nol11 (ENSCHAG00000021822) PITPNC1 (ENSCHAG00000021899) TEX2 (ENSCHAG00000022001) ENSCHAG00000022023 AXIN2 (ENSCHAG00000022028) APOH (ENSCHAG00000022052) ENSCHAG00000022057 prkcaa (ENSCHAG00000022082) CACNG5 (ENSCHAG00000022869) CACNG4 (ENSCHAG00000002678) CACNG1 (ENSCHAG00000002770) psmd12 (ENSCHAG00000002861) ppp1r12c (ENSCHAG00000004027) ENSCHAG00000004165 ENSCHAG00000004197 ##22 ENSCHAG00000004230 ENSCHAG00000004250 gga1 (ENSCHAG00000004328) ddx17 (ENSCHAG00000006115) ENSCHAG00000009990 ENSCHAG00000010135 ENSCHAG00000010153 ENSCHAG00000010171 ENSCHAG00000010180 ENSCHAG00000010208 ENSCHAG00000010226 MPV17L (ENSCHAG00000010298) bmerb1 (ENSCHAG00000010319) MARF1 (ENSCHAG00000010402) SMARCA4 (ENSCHAG00000011670) Otophysi DUPLICATION Otophysi ANCESTRAL SPECIES ENSGT00950000183145.A.a.t ##22 Cyprinoidei ANCESTRAL SPECIES ENSGT00950000183145.A.a.t ##22 Cyprininae ANCESTRAL SPECIES 22 ENSGT00940000156054.d.j.a ENSGT00940000166711.a ENSGT00390000004690.a.a ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000154811.A.o.b ENSGT00940000155348.B.c.b ENSGT00940000160643.i.a ENSGT00670000098179.e.c ENSGT00940000165576.a.b.m.a ENSGT00940000154811.A.o.a ENSGT00940000155348.B.c.a ENSGT00940000160643.i.b ENSGT00670000098179.e.d ENSGT00940000165576.a.b.m.b.a ENSGT00950000183145.A.a.t ##22 ENSGT00940000155140.s.a ENSGT00390000016335.g.d ENSGT00950000183207.b.l ENSGT00950000183150.a.a.a.d.h ENSGT00940000157744.c.b ENSGT00940000161979.B.o.b ENSGT00950000183150.a.a.a.d.g ENSGT00940000157744.c.a ENSGT00390000000050 ENSGT00630000091000 ENSGT00520000055626.b.l ENSGT00390000012483.i ENSGT00940000164923.a.b.a ENSGT00940000159038.a.b.a.a ENSGT00940000159805.e Goldfish MODERN SPECIES 3059 ENSCARG00000042318 ##22 ENSCARG00000042335 Cyprininae_a ANCESTRAL SPECIES 253 ENSGT00940000156518.B.c.a ENSGT01100000263659.a ENSGT00940000159327.u.a.a.b ENSGT00940000159737.d.a ENSGT00940000157282.i ENSGT00940000156054.d.j.b ENSGT00940000166711.b ENSGT00390000004690.a.a ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000154811.A.o.a ENSGT00940000155348.B.c.a ENSGT00940000160643.i.b ENSGT00670000098179.e.d ENSGT00940000165576.a.b.m.b.a ENSGT00950000183145.A.a.t ##22 ENSGT00940000155140.s.a ENSGT00390000016335.g.d ENSGT00950000183207.b.l ENSGT00950000183150.a.a.a.d.h ENSGT00940000157744.c.b ENSGT00940000161979.B.o.b ENSGT00390000000050.c ENSGT00520000055626.b.k ENSGT00390000012483.j ENSGT00940000164923.a.b.a.b ENSGT00940000159038.a.b.b ENSGT00940000159038.a.b.a.b ENSGT00940000159805.f ENSGT00940000160236.c ENSGT00940000162290.`b Common carp reference MODERN SPECIES 36 ENSCCRG00000064934 ENSCCRG00000080799 ENSCCRG00000067530 ENSCCRG00000064156 ENSCCRG00000044296 ENSCCRG00000074712 ENSCCRG00000035021 ENSCCRG00000032481 ENSCCRG00000048394 ENSCCRG00000068093 ENSCCRG00000035921 ENSCCRG00000063821 ENSCCRG00000051891 ENSCCRG00000060174 ENSCCRG00000080972 ENSCCRG00000043923 ##22 ENSCCRG00000032974 ENSCCRG00000056842 ENSCCRG00000066525 ENSCCRG00000080256 ENSCCRG00000070629 ENSCCRG00000064609 ENSCCRG00000042866 ENSCCRG00000061911 ENSCCRG00000041592 ENSCCRG00000041598 ENSCCRG00000033499 ENSCCRG00000082400 ENSCCRG00000081927 ENSCCRG00000053954 ENSCCRG00000064214 Golden-line barbel MODERN SPECIES 490 ier2a (ENSSGRG00000042348) NACC1 (ENSSGRG00000042347) ELFN2 (ENSSGRG00000042346) sgsm3 (ENSSGRG00000041928) gtpbp1 (ENSSGRG00000041800) ENSSGRG00000041799 ccdc103 (ENSSGRG00000041798) ccdc103 (ENSSGRG00000041796) abi3a (ENSSGRG00000041794) mpp2a (ENSSGRG00000041791) pyya (ENSSGRG00000041789) hspb9 (ENSSGRG00000041787) rarab (ENSSGRG00000041778) ENSSGRG00000041773 ##22 CASP6 (ENSSGRG00000041772) ENSSGRG00000041771 aoc2 (ENSSGRG00000041770) G6PC1 (ENSSGRG00000041725) KAT7 (ENSSGRG00000041591) ENSSGRG00000041585 rusf1 (ENSSGRG00000041577) ENSSGRG00000041573 cd2bp2 (ENSSGRG00000041571) pheta2 (ENSSGRG00000041570) mylpfa (ENSSGRG00000041569) tbc1d10b (ENSSGRG00000041564) hsd3b7 (ENSSGRG00000041527) ENSSGRG00000041519 fus (ENSSGRG00000041515) Otophysi DUPLICATION Otophysi DUPLICATION Otophysi ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.a.a ##22 Characiphysae ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.a.a ##22 Characiphysae_b ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.a.a ##22 Characoidei DUPLICATION Characoidei ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.a.a.a ##22 Mexicana tetra MODERN SPECIES 22 TMEM178B (ENSAMXG00000043186) mrps33 (ENSAMXG00000043198) braf (ENSAMXG00000011513) ENSAMXG00000024989 btbd11a (ENSAMXG00000043749) ENSAMXG00000005431 cry1a (ENSAMXG00000005406) ENSAMXG00000043474 ENSAMXG00000031949 tnnt2c (ENSAMXG00000025742) si:dkey-222f8.3 (ENSAMXG00000005380) cyb5r3 (ENSAMXG00000037793) ENSAMXG00000005360 syt10 (ENSAMXG00000000324) ENSAMXG00000029987 ENSAMXG00000031709 ##22 ENSAMXG00000000926 ENSAMXG00000036009 ENSAMXG00000000922 ENSAMXG00000040305 ##22 ENSAMXG00000030640 ##22 ENSAMXG00000010368 prmt8b (ENSAMXG00000019502) tspan11 (ENSAMXG00000010362) sema3aa (ENSAMXG00000010349) ENSAMXG00000010328 ENSAMXG00000034903 ankrd16 (ENSAMXG00000010317) gdi2 (ENSAMXG00000035464) asb13a.1 (ENSAMXG00000030012) asb13a.2 (ENSAMXG00000035244) Red-bellied piranha MODERN SPECIES 1028 ENSPNAG00000015950 ##22 ENSPNAG00000015908 ENSPNAG00000015849 ##22 ENSPNAG00000015763 ENSPNAG00000015711 Characoidei ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.a.a.b ##22 Red-bellied piranha MODERN SPECIES 923 ENSPNAG00000013544 ENSPNAG00000004904 ##22 ENSPNAG00000002751 ENSPNAG00000013446 ENSPNAG00000002721 ENSPNAG00000013231 ENSPNAG00000002631 Otophysi ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.a.b ##22 Characiphysae ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.a.b ##22 Characiphysae_b ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.a.b ##22 Characoidei ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.a.b ##22 Red-bellied piranha DUPLICATION Red-bellied piranha DUPLICATION Red-bellied piranha MODERN SPECIES 905 ENSPNAG00000018743 ##22 ENSPNAG00000018776 ENSPNAG00000018999 ENSPNAG00000019094 Red-bellied piranha MODERN SPECIES 198 net1 (ENSPNAG00000029793) asb13a.1 (ENSPNAG00000029784) ENSPNAG00000029772 gdi2 (ENSPNAG00000029765) ankrd16 (ENSPNAG00000029740) ENSPNAG00000029679 sema3aa (ENSPNAG00000029239) tspan11 (ENSPNAG00000029161) prmt8b (ENSPNAG00000029141) CRACR2A (ENSPNAG00000029103) ccdc59 (ENSPNAG00000029087) mettl25 (ENSPNAG00000029077) tmtc2a (ENSPNAG00000029064) ENSPNAG00000004499 ENSPNAG00000004486 ENSPNAG00000028906 ##22 Red-bellied piranha MODERN SPECIES 1028 ENSPNAG00000015950 ##22 ENSPNAG00000015908 ENSPNAG00000015849 ##22 ENSPNAG00000015763 ENSPNAG00000015711 Mexicana tetra DUPLICATION Mexicana tetra MODERN SPECIES 22 btbd11a (ENSAMXG00000043749) ENSAMXG00000005431 cry1a (ENSAMXG00000005406) ENSAMXG00000043474 ENSAMXG00000031949 tnnt2c (ENSAMXG00000025742) si:dkey-222f8.3 (ENSAMXG00000005380) cyb5r3 (ENSAMXG00000037793) ENSAMXG00000005360 syt10 (ENSAMXG00000000324) ENSAMXG00000029987 ENSAMXG00000031709 ##22 ENSAMXG00000000926 ENSAMXG00000036009 ENSAMXG00000000922 ENSAMXG00000040305 ##22 ENSAMXG00000030640 ##22 ENSAMXG00000010368 prmt8b (ENSAMXG00000019502) tspan11 (ENSAMXG00000010362) sema3aa (ENSAMXG00000010349) ENSAMXG00000010328 ENSAMXG00000034903 ankrd16 (ENSAMXG00000010317) gdi2 (ENSAMXG00000035464) asb13a.1 (ENSAMXG00000030012) asb13a.2 (ENSAMXG00000035244) tmem178bb (ENSAMXG00000011478) cnot4b (ENSAMXG00000011473) mkrn1 (ENSAMXG00000032974) ENSAMXG00000043438 Mexicana tetra MODERN SPECIES 22 ENSAMXG00000005431 cry1a (ENSAMXG00000005406) ENSAMXG00000043474 ENSAMXG00000031949 tnnt2c (ENSAMXG00000025742) si:dkey-222f8.3 (ENSAMXG00000005380) cyb5r3 (ENSAMXG00000037793) ENSAMXG00000005360 syt10 (ENSAMXG00000000324) ENSAMXG00000029987 ENSAMXG00000031709 ##22 ENSAMXG00000000926 ENSAMXG00000036009 ENSAMXG00000000922 ENSAMXG00000040305 ##22 ENSAMXG00000030640 ##22 ENSAMXG00000010368 prmt8b (ENSAMXG00000019502) tspan11 (ENSAMXG00000010362) sema3aa (ENSAMXG00000010349) ENSAMXG00000010328 ENSAMXG00000034903 ankrd16 (ENSAMXG00000010317) gdi2 (ENSAMXG00000035464) asb13a.1 (ENSAMXG00000030012) asb13a.2 (ENSAMXG00000035244) tmem178bb (ENSAMXG00000011478) cnot4b (ENSAMXG00000011473) mkrn1 (ENSAMXG00000032974) ENSAMXG00000043438 TMEM121B (ENSAMXG00000036292) Cyprinoidei ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.a.b ##22 Cyprininae ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.a.b ##22 Cyprininae_a ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.a.b ##22 Golden-line barbel DUPLICATION Golden-line barbel MODERN SPECIES ENSSGRG00000000058 ENSSGRG00000000057 gdi2 (ENSSGRG00000000056) ankrd16 (ENSSGRG00000000055) ENSSGRG00000000054 sema3aa (ENSSGRG00000000053) tspan11 (ENSSGRG00000000052) prmt8b (ENSSGRG00000000051) ENSSGRG00000000050 ENSSGRG00000000048 ENSSGRG00000000047 ENSSGRG00000000046 ccdc59 (ENSSGRG00000000045) ENSSGRG00000000044 tmtc2a (ENSSGRG00000000041) ENSSGRG00000000040 ##22 ENSSGRG00000000039 Golden-line barbel MODERN SPECIES 1535 ENSSGRG00000028613 ##22 ENSSGRG00000028612 ccdc59 (ENSSGRG00000028604) mettl25 (ENSSGRG00000028603) tmtc2a (ENSSGRG00000028602) ENSSGRG00000028600 ENSSGRG00000028599 ENSSGRG00000028598 ENSSGRG00000028595 Otophysi DUPLICATION Otophysi ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.b.a ##22 Cyprinoidei ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.b.a ##22 Cyprininae ANCESTRAL SPECIES 1042 ENSGT00950000183145.A.a.u.b.a ##22 ENSGT00940000155140.s.b ENSGT00390000016335.g.c ENSGT00950000183207.b.k Cyprininae_a ANCESTRAL SPECIES 54 ENSGT00950000183145.A.a.u.b.a ##22 ENSGT00940000155140.s.b ENSGT00390000016335.g.c ENSGT00950000183207.b.k ENSGT00950000183150.a.a.a.d.g ENSGT00940000157744.c.a ENSGT00390000000050.d ENSGT00630000091000 ENSGT00520000055626.b.l ENSGT00390000012483.i ENSGT00940000164923.a.b.a.a ENSGT00940000159038.a.b.a.a ENSGT00940000159805.e ENSGT00940000160236.d ENSGT00940000162290.ab ENSGT00940000157290.hb Common carp reference MODERN SPECIES 1 ENSCCRG00000011544 ENSCCRG00000077933 ENSCCRG00000078596 sgsm3 (ENSCCRG00000024518) gtpbp1 (ENSCCRG00000023155) ENSCCRG00000024476 rpl23 (ENSCCRG00000073217) abi3a (ENSCCRG00000073201) mpp2a (ENSCCRG00000065115) pyya (ENSCCRG00000073767) hspb9 (ENSCCRG00000007869) rarab (ENSCCRG00000070551) ENSCCRG00000056654 ##22 ENSCCRG00000077207 ##22 ENSCCRG00000063386 ENSCCRG00000041983 ##22 ENSCCRG00000052811 ENSCCRG00000013183 aoc2 (ENSCCRG00000063375) ENSCCRG00000032099 ENSCCRG00000013229 rusf1 (ENSCCRG00000017991) ENSCCRG00000071035 ENSCCRG00000015331 pheta2 (ENSCCRG00000075166) mylpfa (ENSCCRG00000017709) tbc1d10b (ENSCCRG00000018014) hsd3b7 (ENSCCRG00000017958) ENSCCRG00000054069 fus (ENSCCRG00000065074) rnf25 (ENSCCRG00000018157) Goldfish MODERN SPECIES 20 ENSCARG00000016280 syt5a (ENSCARG00000016233) ENSCARG00000016184 ENSCARG00000016151 NACC1 (ENSCARG00000016130) ENSCARG00000016107 ELFN2 (ENSCARG00000016047) ENSCARG00000016002 tnnt1 (ENSCARG00000015967) ENSCARG00000015906 syt5a (ENSCARG00000015865) ENSCARG00000015822 aldh16a1 (ENSCARG00000015774) fus (ENSCARG00000015701) ENSCARG00000015679 ENSCARG00000015673 ##22 CASP6 (ENSCARG00000015642) ENSCARG00000015628 aoc2 (ENSCARG00000026368) G6PC1 (ENSCARG00000026311) ENSCARG00000025902 rusf1 (ENSCARG00000025740) ENSCARG00000025730 cd2bp2 (ENSCARG00000025721) pheta2 (ENSCARG00000025714) mylpfa (ENSCARG00000025685) tbc1d10b (ENSCARG00000025652) ENSCARG00000025627 fus (ENSCARG00000025604) ENSCARG00000025591 kat8 (ENSCARG00000025283) Otophysi ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.b.b ##22 Cyprinoidei ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.b.b ##22 Cyprininae ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.b.b ##22 Goldfish DUPLICATION Goldfish MODERN SPECIES 2084 ENSCARG00000050092 ##22 Goldfish MODERN SPECIES 22 ENSCARG00000010317 gtf2f1 (ENSCARG00000010355) CACNA1A (ENSCARG00000010966) ier2a (ENSCARG00000025080) NACC1 (ENSCARG00000025093) ELFN2 (ENSCARG00000025121) sgsm3 (ENSCARG00000025190) gtpbp1 (ENSCARG00000025409) ENSCARG00000026216 rpl23 (ENSCARG00000026222) abi3a (ENSCARG00000026245) mpp2a (ENSCARG00000026252) pyya (ENSCARG00000026323) hspb9 (ENSCARG00000026339) rarab (ENSCARG00000000146) ENSCARG00000000204 ##22 CASP6 (ENSCARG00000000253) ENSCARG00000000272 aoc2 (ENSCARG00000000287) KAT7 (ENSCARG00000000344) ENSCARG00000000367 ENSCARG00000000379 cd2bp2 (ENSCARG00000000391) pheta2 (ENSCARG00000000393) mylpfa (ENSCARG00000000401) tbc1d10b (ENSCARG00000000428) hsd3b7 (ENSCARG00000000474) ENSCARG00000000484 ENSCARG00000000491 rnf25 (ENSCARG00000000510) ENSCARG00000000544 Cyprininae_a ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.b.b ##22 Common carp reference DUPLICATION Common carp reference MODERN SPECIES 1 gtf2f1 (ENSCCRG00000043621) alkbh7 (ENSCCRG00000043617) ENSCCRG00000011544 ENSCCRG00000077933 ENSCCRG00000078596 sgsm3 (ENSCCRG00000024518) gtpbp1 (ENSCCRG00000023155) ENSCCRG00000024476 rpl23 (ENSCCRG00000073217) abi3a (ENSCCRG00000073201) mpp2a (ENSCCRG00000065115) pyya (ENSCCRG00000073767) hspb9 (ENSCCRG00000007869) rarab (ENSCCRG00000070551) ENSCCRG00000056654 ##22 ENSCCRG00000077207 ##22 ENSCCRG00000063386 ENSCCRG00000041983 ##22 ENSCCRG00000052811 ENSCCRG00000013183 aoc2 (ENSCCRG00000063375) ENSCCRG00000032099 ENSCCRG00000013229 rusf1 (ENSCCRG00000017991) ENSCCRG00000071035 ENSCCRG00000015331 pheta2 (ENSCCRG00000075166) mylpfa (ENSCCRG00000017709) tbc1d10b (ENSCCRG00000018014) hsd3b7 (ENSCCRG00000017958) ENSCCRG00000054069 Common carp reference MODERN SPECIES 1 scpep1 (ENSCCRG00000023350) coil (ENSCCRG00000026168) ENSCCRG00000058130 rab11fip4a (ENSCCRG00000052703) suz12a (ENSCCRG00000030954) crlf3 (ENSCCRG00000029036) ENSCCRG00000051831 traf7 (ENSCCRG00000051835) gng13b (ENSCCRG00000077704) dctn5 (ENSCCRG00000069775) rpusd1 (ENSCCRG00000074781) ndufab1b (ENSCCRG00000075422) TNRC6A (ENSCCRG00000051876) rbbp6 (ENSCCRG00000027226) ENSCCRG00000016632 ENSCCRG00000066688 ##22 prkcbb (ENSCCRG00000016641) smarce1 (ENSCCRG00000052746) ENSCCRG00000052752 ENSCCRG00000022691 cdk5r1a (ENSCCRG00000074527) psmd11a (ENSCCRG00000046026) nsfa (ENSCCRG00000045219) thraa (ENSCCRG00000040077) ENSCCRG00000015409 ENSCCRG00000015407 ENSCCRG00000055002 zgc:163143 (ENSCCRG00000031303) nmrk1 (ENSCCRG00000031301) septin9a (ENSCCRG00000045753) ENSCCRG00000064115 Zebrafish MODERN SPECIES 18 CACNA1A (ENSDARG00000037905) ier2a (ENSDARG00000099195) NACC1 (ENSDARG00000099164) ELFN2 (ENSDARG00000110874) sgsm3 (ENSDARG00000019038) gtpbp1 (ENSDARG00000053467) ENSDARG00000053460 rpl23 (ENSDARG00000053457) ccdc103 (ENSDARG00000053455) abi3a (ENSDARG00000060072) ENSDARG00000104213 mpp2a (ENSDARG00000053453) pyya (ENSDARG00000053449) hspb9 (ENSDARG00000078674) rarab (ENSDARG00000034893) ENSDARG00000101017 ##22 ENSDARG00000111315 ##22 casp6b.2 (ENSDARG00000070368) casp6a (ENSDARG00000093405) casp6b.1 (ENSDARG00000025608) ENSDARG00000078772 aoc2 (ENSDARG00000014646) G6PC1 (ENSDARG00000014967) kat7a (ENSDARG00000070371) zgc:113090 (ENSDARG00000053260) rusf1 (ENSDARG00000059919) ENSDARG00000098191 ENSDARG00000089232 cd2bp2 (ENSDARG00000027357) pheta2 (ENSDARG00000110325) mylpfa (ENSDARG00000053254) Characiphysae ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.b.b ##22 Characiphysae_b ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.b.b ##22 Characoidei ANCESTRAL SPECIES ENSGT00950000183145.A.a.u.b.b ##22 Mexicana tetra MODERN SPECIES 500 ENSAMXG00000032293 ##22 ENSAMXG00000042467 Spotted gar DUPLICATION Spotted gar MODERN SPECIES 647 ENSLOCG00000015557 ENSLOCG00000015554 HAUS7 (ENSLOCG00000015550) atp2b3a (ENSLOCG00000015538) ccnq (ENSLOCG00000015536) DUSP9 (ENSLOCG00000015534) ENSLOCG00000015533 cfap126 (ENSLOCG00000015532) dedd (ENSLOCG00000015531) ENSLOCG00000015529 ENSLOCG00000015527 ENSLOCG00000015526 ##22 tnnc1b (ENSLOCG00000015523) si:dkey-6n6.1 (ENSLOCG00000015522) bgna (ENSLOCG00000015519) ENSLOCG00000015515 ##22 ENSLOCG00000017984 si:ch211-150o23.2 (ENSLOCG00000015513) FLNA (ENSLOCG00000015505) ENSLOCG00000015504 rpl10 (ENSLOCG00000015500) dnase1l1l (ENSLOCG00000015497) dnase1l1 (ENSLOCG00000015492) atp6ap1a (ENSLOCG00000015488) tafazzin (ENSLOCG00000015485) ENSLOCG00000015482 gdi1 (ENSLOCG00000015477) ITIH6 (ENSLOCG00000015473) ndnl2 (ENSLOCG00000015466) pfkfb1 (ENSLOCG00000015463) tnfrsfa (ENSLOCG00000015460) Spotted gar MODERN SPECIES 299 ENSLOCG00000000329 ENSLOCG00000000359 ENSLOCG00000000398 ##22 Spotted gar MODERN SPECIES 647 sema3ga (ENSLOCG00000014436) tspy (ENSLOCG00000014443) wasb (ENSLOCG00000014446) SLC38A5 (ENSLOCG00000014448) ccdc22 (ENSLOCG00000014464) apex2 (ENSLOCG00000014467) zgc:162200 (ENSLOCG00000014473) nt5dc2 (ENSLOCG00000014477) FAM107A (ENSLOCG00000014487) renbp (ENSLOCG00000014488) ENSLOCG00000014494 ptpn18 (ENSLOCG00000014499) MON1B (ENSLOCG00000014503) gripap1 (ENSLOCG00000014510) kcnd1 (ENSLOCG00000014523) ENSLOCG00000014533 ##22 ENSLOCG00000014538 alas2 (ENSLOCG00000014541) fam50a (ENSLOCG00000014548) ENSLOCG00000014554 ENSLOCG00000014555 comtb (ENSLOCG00000014559) abt1 (ENSLOCG00000014561) grm6a (ENSLOCG00000014563) ENSLOCG00000014568 zgc:86609 (ENSLOCG00000014569) uxt (ENSLOCG00000014570) ELK1 (ENSLOCG00000014572) ENSLOCG00000017978 otud5a (ENSLOCG00000014573) pim2 (ENSLOCG00000014577) Elephant shark DUPLICATION Elephant shark MODERN SPECIES 2441 ENSCMIG00000006881 ##22 ENSCMIG00000006878 ENSCMIG00000006876 ##22 ENSCMIG00000006870 ENSCMIG00000006869 Elephant shark DUPLICATION Elephant shark DUPLICATION Elephant shark DUPLICATION Elephant shark DUPLICATION Elephant shark DUPLICATION Elephant shark MODERN SPECIES 2636 ENSCMIG00000003233 ##22 Elephant shark MODERN SPECIES 126 ENSCMIG00000000398 ##22 Elephant shark MODERN SPECIES 521 ENSCMIG00000001842 ##22 Elephant shark MODERN SPECIES 1925 ENSCMIG00000014286 ENSCMIG00000014283 ##22 ENSCMIG00000014281 ENSCMIG00000014271 Elephant shark MODERN SPECIES 1794 ENSCMIG00000009640 ENSCMIG00000009625 ENSCMIG00000009612 ENSCMIG00000009607 ENSCMIG00000009604 ENSCMIG00000009603 ENSCMIG00000009602 ENSCMIG00000009599 ##22 Elephant shark MODERN SPECIES 288 ENSCMIG00000001939 ENSCMIG00000001934 ##22 Gnathostomata DUPLICATION Gnathostomata ANCESTRAL SPECIES 10 ENSGT00940000158936 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000169682 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00530000063371.B ENSGT00390000013399 ENSGT00530000063424.a ENSGT00530000063474.A ENSGT00940000158045 ENSGT00940000154430 Elephant shark MODERN SPECIES 1600 inpp5f (ENSCMIG00000004936) #9 mcmbp (ENSCMIG00000005029) #10 sec23ip (ENSCMIG00000005154) #11 PLPP4 (ENSCMIG00000005256) #12 wdr11 (ENSCMIG00000005340) #13 FGFR2 (ENSCMIG00000006245) #14 ATE1 (ENSCMIG00000007474) #15 ENSCMIG00000007523 #17 nsmce4a (ENSCMIG00000007525) ENSCMIG00000007530 #18 ly6pge (ENSCMIG00000007537) ENSCMIG00000007542 plekha1a (ENSCMIG00000007549) #20 htra1b (ENSCMIG00000007553) #21 ENSCMIG00000007557 ##22 ENSCMIG00000007561 C10orf88 (ENSCMIG00000007568) #29 ENSCMIG00000007576 PSTK (ENSCMIG00000007617) ikzf5 (ENSCMIG00000007619) ikzf5 (ENSCMIG00000007622) ACADSB (ENSCMIG00000007641) hmx3a (ENSCMIG00000007663) bub3 (ENSCMIG00000007668) GPR26 (ENSCMIG00000007672) CPXM2 (ENSCMIG00000007686) CHST15 (ENSCMIG00000007713) oat (ENSCMIG00000007767) ENSCMIG00000007805 abraxas2 (ENSCMIG00000007814) Euteleostomi ANCESTRAL SPECIES 625 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.B.a.a ##22 Actinopterygii ANCESTRAL SPECIES 528 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.B.a.a ##22 Reedfish DUPLICATION Reedfish DUPLICATION Reedfish DUPLICATION Reedfish MODERN SPECIES 254 ENSECRG00000018116 ##22 ENSECRG00000018440 ##22 Reedfish MODERN SPECIES 254 ENSECRG00000018116 ##22 ENSECRG00000018440 ##22 Reedfish MODERN SPECIES mgat1b (ENSECRG00000000377) vars2 (ENSECRG00000000376) ENSECRG00000000375 polr1h (ENSECRG00000000374) ppp1r11 (ENSECRG00000000373) gtf2h4 (ENSECRG00000000372) sh3bp5la (ENSECRG00000000371) ilrun (ENSECRG00000000370) ENSECRG00000000369 GABBR1 (ENSECRG00000000368) ENSECRG00000000367 ENSECRG00000000366 ATP6V1G2 (ENSECRG00000000365) neu1 (ENSECRG00000000364) ENSECRG00000000363 ENSECRG00000000362 ##22 ENSECRG00000000361 ENSECRG00000000360 #25 ENSECRG00000000359 ##22 bag6l (ENSECRG00000000358) ENSECRG00000000357 ptges (ENSECRG00000000356) ENSECRG00000000355 ENSECRG00000000354 ENSECRG00000000353 ENSECRG00000000352 ENSECRG00000000351 vars1 (ENSECRG00000000350) ENSECRG00000000349 ENSECRG00000000348 ENSECRG00000000347 Reedfish MODERN SPECIES 14 RHPN1 (ENSECRG00000011227) ENSECRG00000011265 ENSECRG00000011348 naprt (ENSECRG00000011369) EEF1D (ENSECRG00000011405) pycr3 (ENSECRG00000011427) LRRC24 (ENSECRG00000011448) THEM6 (ENSECRG00000011463) ENSECRG00000011469 C8orf82 (ENSECRG00000011480) ARHGAP39 (ENSECRG00000011496) gfus.1 (ENSECRG00000011523) bmb (ENSECRG00000011552) ENSECRG00000011587 ENSECRG00000011649 ENSECRG00000011813 ##22 ENSECRG00000011903 ENSECRG00000011912 vmo1a (ENSECRG00000011919) ENSECRG00000011940 ENSECRG00000011969 ENSECRG00000011977 ENSECRG00000011990 ENSECRG00000012001 ENSECRG00000012008 ENSECRG00000012023 ENSECRG00000012038 ENSECRG00000012053 ENSECRG00000012077 LRRC14 (ENSECRG00000012089) maf1b (ENSECRG00000012104) Neopterygii ANCESTRAL SPECIES 432 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.B.a.a.b ##22 Spotted gar MODERN SPECIES 422 ENSLOCG00000000322 ENSLOCG00000000358 ##22 Osteoglossocephalai ANCESTRAL SPECIES 556 ENSGT00940000163299.B.b.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.B.a.a.a.b ##22 Osteoglossiformes ANCESTRAL SPECIES 830 ENSGT00940000163299.B.b.b ENSGT00950000183145.A.b.a ##22 P. kingsleyae MODERN SPECIES 1118 ENSPKIG00000018850 ##22 Asian bonytongue DUPLICATION Asian bonytongue MODERN SPECIES 23 ttyh2l (ENSSFOG00015016972) SDK2 (ENSSFOG00015017001) cdc42ep4a (ENSSFOG00015017093) ENSSFOG00015017098 ENSSFOG00015017137 rsad1 (ENSSFOG00015017148) rasd2a (ENSSFOG00015024504) ENSSFOG00015026083 arl16 (ENSSFOG00015030899) fn3krp (ENSSFOG00015030439) ENSSFOG00015017577 TBCD (ENSSFOG00015017305) METRNL (ENSSFOG00015017588) ENSSFOG00015017599 ENSSFOG00015004732 ENSSFOG00015029968 ##22 ENSSFOG00015024916 ENSSFOG00015017633 ENSSFOG00015031172 ##22 ATP5PD (ENSSFOG00015000131) kctd2 (ENSSFOG00015024024) SLC16A5 (ENSSFOG00015024021) acsf2 (ENSSFOG00015024020) ndel1b (ENSSFOG00015024019) RNF222 (ENSSFOG00015024018) ARHGAP44 (ENSSFOG00015024016) ENSSFOG00015024014 ENSSFOG00015021509 pmp22a (ENSSFOG00015031112) cldnk (ENSSFOG00015024004) hgs (ENSSFOG00015024001) Asian bonytongue MODERN SPECIES 23 ENSSFOG00015017098 ENSSFOG00015017137 rsad1 (ENSSFOG00015017148) rasd2a (ENSSFOG00015024504) ENSSFOG00015026083 arl16 (ENSSFOG00015030899) fn3krp (ENSSFOG00015030439) ENSSFOG00015017577 TBCD (ENSSFOG00015017305) METRNL (ENSSFOG00015017588) ENSSFOG00015017599 ENSSFOG00015004732 ENSSFOG00015029968 ##22 ENSSFOG00015024916 ENSSFOG00015017633 ENSSFOG00015031172 ##22 ATP5PD (ENSSFOG00015000131) kctd2 (ENSSFOG00015024024) SLC16A5 (ENSSFOG00015024021) acsf2 (ENSSFOG00015024020) ndel1b (ENSSFOG00015024019) RNF222 (ENSSFOG00015024018) ARHGAP44 (ENSSFOG00015024016) ENSSFOG00015024014 ENSSFOG00015021509 pmp22a (ENSSFOG00015031112) cldnk (ENSSFOG00015024004) hgs (ENSSFOG00015024001) mrpl12 (ENSSFOG00015023998) SLC25A10 (ENSSFOG00015023996) ENSSFOG00015023993 Clupeocephala ANCESTRAL SPECIES 585 ENSGT00670000098179.e ENSGT00940000165576.a.b ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 Euteleosteomorpha ANCESTRAL SPECIES 436 ENSGT00670000098179.e ENSGT00940000165576.a.b ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 Protacanthopterygii ANCESTRAL SPECIES 5 ENSGT00990000210186 ENSGT00940000160724 ENSGT00940000176123 ENSGT00940000158410.g.a.a ENSGT00950000182950.C ENSGT00530000063688.b.nb.b ENSGT00940000157746.f ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000154811.A ENSGT00940000163871.b ENSGT00940000155348.B.c ENSGT00940000160643.i ENSGT00670000098179.e ENSGT00940000165576.a.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000154360.B ENSGT00940000153653.a.a ENSGT00390000017328.a.a ENSGT00940000158833.a.a ENSGT00940000156584.e.b ENSGT01100000263525.b.a ENSGT00390000006679.b ENSGT00390000005602 ENSGT01030000234646.B.a.a.a.a.b ENSGT00940000153704.B.d ENSGT00940000157439.a ENSGT00940000154534.b.a ENSGT00390000004405.b ENSGT00950000182892.a.b.a.b.b ENSGT00940000154152.b.a Northern pike DUPLICATION Northern pike DUPLICATION Northern pike MODERN SPECIES 106 ENSELUG00000014049 ##22 Northern pike MODERN SPECIES 10 ifnphi1 (ENSELUG00000026570) ENSELUG00000025363 ENSELUG00000013429 ENSELUG00000013465 ENSELUG00000028821 ITGA3 (ENSELUG00000013550) ccdc103 (ENSELUG00000013582) FAM187A (ENSELUG00000013593) abi3a (ENSELUG00000013651) ENSELUG00000013682 mpp2a (ENSELUG00000013743) pyya (ENSELUG00000013825) hspb9 (ENSELUG00000013852) rarab (ENSELUG00000013907) ENSELUG00000013984 ##22 ENSELUG00000014026 ##22 ENSELUG00000031826 psmd3 (ENSELUG00000014100) ENSELUG00000032826 ENSELUG00000014127 PPP1R9B (ENSELUG00000014166) col1a1a (ENSELUG00000014218) ENSELUG00000014247 ENSELUG00000014268 nags (ENSELUG00000014289) pdk2b (ENSELUG00000014339) TBKBP1 (ENSELUG00000014401) ENSELUG00000014464 prr15la (ENSELUG00000014511) copz2 (ENSELUG00000014620) nfe2l1a (ENSELUG00000014683) Northern pike MODERN SPECIES 21 PCDH9 (ENSELUG00000003197) pou4f1 (ENSELUG00000003179) ENSELUG00000003168 RBM26 (ENSELUG00000003110) tpt1 (ENSELUG00000003046) gtf2f2a (ENSELUG00000003032) gpalpp1 (ENSELUG00000003016) ercc3 (ENSELUG00000000089) cyp27c1 (ENSELUG00000002997) chmp2bb (ENSELUG00000002984) ENSELUG00000002975 ENSELUG00000031368 arl13b (ENSELUG00000002930) nsun3 (ENSELUG00000002921) ENSELUG00000002908 ##22 ENSELUG00000002895 ENSELUG00000029467 ENSELUG00000002884 nop58 (ENSELUG00000002860) wdr12 (ENSELUG00000002831) ICA1L (ENSELUG00000002826) FAM117B (ENSELUG00000002816) bmpr2a (ENSELUG00000002804) ENSELUG00000002786 SLC15A1 (ENSELUG00000002755) stk24b (ENSELUG00000002743) FARP1 (ENSELUG00000002714) ggact.3 (ENSELUG00000002657) ENSELUG00000002648 ENSELUG00000030639 Salmoninae ANCESTRAL SPECIES 250 ENSGT00940000155348.B.c.c ENSGT00940000160643.i.c ENSGT00670000098179.e ENSGT00940000165576.a.b.f.b.a ENSGT00950000183145.A.b.a ##22 ENSGT00940000154360.B.a ENSGT00940000153653.a.a.p ENSGT00390000017328.a.a ENSGT00940000158833.a.a.d ENSGT00940000156584.e.b.d.b ENSGT01100000263525.b.a.k ENSGT00390000006679.b.k ENSGT00390000005602 ENSGT01030000234646.B.a.a.a.a.b.f ENSGT00940000153704.B.d.a ENSGT00940000157439.a.d ENSGT00940000154534.b.a.i ENSGT00390000004405.b.d.b.a.a ENSGT00390000004405.b.d.b.b ENSGT00950000182892.a.b.a.b.b.c Salmoninae_a ANCESTRAL SPECIES 92 ENSGT00940000176945 ENSGT00940000154811.A.m.b ENSGT00940000163871.b ENSGT00940000155348.B.c.c ENSGT00940000160643.i.c ENSGT01050000245366.b ENSGT00940000165576.a.b.e.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000154360.B.a ENSGT00940000153653.a.a.p ENSGT00390000017328.a.a.k ENSGT00940000158833.a.a.d ENSGT00940000156584.e.b.d.b ENSGT01100000263525.b.a.k ENSGT00390000006679.b.k ENSGT00390000005602 ENSGT01030000234646.B.a.a.a.a.b.f ENSGT00940000153704.B.d.a ENSGT00940000157439.a.d ENSGT00940000154534.b.a.i ENSGT00390000004405.b.d.b.a.a ENSGT00950000182892.a.b.a.b.b.c ENSGT00940000154152.b.a.a Salmo ANCESTRAL SPECIES 28 ENSGT00940000171795.b ENSGT00510000050089.b.e.b.b.a.b ENSGT00510000050089.b.e.a.a ENSGT00510000050089.a.a.p.c.b ENSGT00510000050089.a.a.p.d ENSGT00510000050089.a.a.o ENSGT00950000182858.A.b.b.g.a.i.c.a ENSGT00940000157746.f ENSGT00390000004038.i ENSGT00940000154811.A.m.b ENSGT00940000163871.b.b ENSGT00940000155348.B.c.c ENSGT00940000160643.i.c ENSGT01050000245366.b ENSGT00940000165576.a.b.e.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000154360.B.a ENSGT00940000153653.a.a.p ENSGT00390000017328.a.a.k ENSGT00940000158833.a.a.d ENSGT00940000156584.e.b.d.b ENSGT01100000263525.b.a.k ENSGT00390000006679.b.k ENSGT00390000005602 ENSGT01030000234646.B.a.a.a.a.b.f ENSGT00940000153704.B.d.a ENSGT00940000157439.a.d ENSGT00940000154534.b.a.i ENSGT00390000004405.b.d.a ENSGT00950000182892.a.b.a.b.b.c ENSGT00940000154152.b.a.a Atlantic salmon MODERN SPECIES 25 ENSSSAG00000106735 ENSSSAG00000083509 ENSSSAG00000090973 ENSSSAG00000118050 ENSSSAG00000100953 ENSSSAG00000104134 ENSSSAG00000096702 ENSSSAG00000008062 ccdc103 (ENSSSAG00000008050) abi3a (ENSSSAG00000008003) ENSSSAG00000007930 mpp2a (ENSSSAG00000114517) hsp11 (ENSSSAG00000094518) pyya (ENSSSAG00000007244) rarab (ENSSSAG00000006917) ENSSSAG00000006868 ##22 ENSSSAG00000106413 ENSSSAG00000006800 ENSSSAG00000109332 ENSSSAG00000003643 col1a1a (ENSSSAG00000006686) ENSSSAG00000006663 ENSSSAG00000003876 nags (ENSSSAG00000006619) ENSSSAG00000006444 ENSSSAG00000006408 ENSSSAG00000006340 prr15la (ENSSSAG00000109223) copz2 (ENSSSAG00000004196) nfe2l1a (ENSSSAG00000006129) cbx1a (ENSSSAG00000004291) River trout DUPLICATION River trout MODERN SPECIES 25 ENSSTUG00000041649 ENSSTUG00000041679 ENSSTUG00000041694 ENSSTUG00000041714 GBGT1 (ENSSTUG00000041752) ITGA3 (ENSSTUG00000041851) ccdc103 (ENSSTUG00000041900) FAM187A (ENSSTUG00000041944) abi3a (ENSSTUG00000041952) mpp2a (ENSSTUG00000042006) pyya (ENSSTUG00000042268) ENSSTUG00000042287 rarab (ENSSTUG00000042328) ENSSTUG00000042601 ENSSTUG00000042607 ENSSTUG00000042628 ##22 ENSSTUG00000042670 psmd3 (ENSSTUG00000042696) ENSSTUG00000042917 ENSSTUG00000042925 PPP1R9B (ENSSTUG00000042964) col1a1a (ENSSTUG00000043409) ENSSTUG00000043642 ENSSTUG00000043649 nags (ENSSTUG00000043665) pdk2b (ENSSTUG00000043683) OSBPL7 (ENSSTUG00000043790) prr15la (ENSSTUG00000043845) ENSSTUG00000043849 copz2 (ENSSTUG00000043854) nfe2l1a (ENSSTUG00000043916) River trout MODERN SPECIES ENSSTUG00000012935 ENSSTUG00000012950 ENSSTUG00000012970 ENSSTUG00000012978 ENSSTUG00000012999 ENSSTUG00000013009 ENSSTUG00000013029 GBGT1 (ENSSTUG00000013051) ccdc103 (ENSSTUG00000013069) abi3a (ENSSTUG00000013084) ENSSTUG00000013120 mpp2a (ENSSTUG00000013178) pyya (ENSSTUG00000013396) ENSSTUG00000013411 rarab (ENSSTUG00000013431) ENSSTUG00000013756 ##22 ENSSTUG00000013769 psmd3 (ENSSTUG00000013778) ENSSTUG00000013831 PPP1R9B (ENSSTUG00000013838) col1a1a (ENSSTUG00000013912) ENSSTUG00000013943 ENSSTUG00000013948 nags (ENSSTUG00000000237) pdk2b (ENSSTUG00000000275) TBKBP1 (ENSSTUG00000000547) ENSSTUG00000000562 prr15la (ENSSTUG00000000579) ENSSTUG00000000582 copz2 (ENSSTUG00000000592) nfe2l1a (ENSSTUG00000000656) Oncorhynchus ANCESTRAL SPECIES 64 ENSGT00950000182950.C.i ENSGT00530000063688.b.nb.b.c ENSGT00940000156597.b.a ENSGT01030000234570.d.b.a.b.b.a.a.d ENSGT00940000159417.l ENSGT00950000182818.D.o ENSGT00510000050089.b.e.a ENSGT00950000182858.A.b.b.g.a.i.d ENSGT00530000063991.a.b ENSGT00940000154811.A.m.b ENSGT00940000163871.b ENSGT00940000155348.B.c.c ENSGT00940000160643.i.c ENSGT01050000245366.b ENSGT00940000165576.a.b.e.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000154360.B.a ENSGT00940000153653.a.a.p ENSGT00390000017328.a.a.k ENSGT00940000158833.a.a.d ENSGT00940000156584.e.b.d.b ENSGT01100000263525.b.a.k ENSGT00390000006679.b.k ENSGT00390000005602 ENSGT01030000234646.B.a.a.a.a.b.f ENSGT00940000157439.a.d ENSGT00940000154534.b.a.i ENSGT00390000004405.b.d.b.a.a ENSGT00950000182892.a.b.a.b.b.c ENSGT00940000154152.b.a.a ENSGT00940000166856.k Oncorhynchus_a ANCESTRAL SPECIES 71 ENSGT00940000156597.b.a ENSGT01030000234570.d.b.a.b.b.a.a.d ENSGT00940000159417.l ENSGT00950000182818.D.o ENSGT01100000264143.A ENSGT00940000179141.b ENSGT00510000050089.b.e.a ENSGT00950000182858.A.b.b.g.a.i.d ENSGT00530000063991.a.b ENSGT00940000154811.A.m.b ENSGT00940000163871.b ENSGT00940000155348.B.c.c ENSGT00940000160643.i.c ENSGT01050000245366.b ENSGT00940000165576.a.b.e.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000154360.B.a ENSGT00940000153653.a.a.p ENSGT00390000017328.a.a.k ENSGT00940000158833.a.a.d ENSGT00940000156584.e.b.d.b ENSGT01100000263525.b.a.k ENSGT00390000006679.b.k ENSGT00390000005602 ENSGT01030000234646.B.a.a.a.a.b.f ENSGT00940000157439.a.d ENSGT00940000154534.b.a.i ENSGT00390000004405.b.d.b.a.a ENSGT00950000182892.a.b.a.b.b.c ENSGT00940000154152.b.a.a ENSGT00940000166856.k Coho salmon MODERN SPECIES 1 ENSOKIG00005006844 ENSOKIG00005006875 ENSOKIG00005006894 ENSOKIG00005006918 ENSOKIG00005006926 ENSOKIG00005006933 GBGT1 (ENSOKIG00005006945) ENSOKIG00005006967 abi3a (ENSOKIG00005006983) ENSOKIG00005007010 ENSOKIG00005007026 mpp2a (ENSOKIG00005007226) pyya (ENSOKIG00005007266) ENSOKIG00005007283 rarab (ENSOKIG00005007304) ENSOKIG00005007652 ##22 ENSOKIG00005007707 psmd3 (ENSOKIG00005007721) ENSOKIG00005007804 PPP1R9B (ENSOKIG00005007824) col1a1a (ENSOKIG00005007949) ENSOKIG00005008117 ENSOKIG00005008125 nags (ENSOKIG00005008137) PDK2 (ENSOKIG00005008185) ENSOKIG00005008464 prr15la (ENSOKIG00005008658) copz2 (ENSOKIG00005008689) nfe2l1a (ENSOKIG00005008857) cbx1a (ENSOKIG00005008868) hoxb1a (ENSOKIG00005008918) Chinook salmon MODERN SPECIES 19 SCN4A (ENSOTSG00005028845) gh1 (ENSOTSG00005037836) ENSOTSG00005037839 ENSOTSG00005037841 ENSOTSG00005037842 ENSOTSG00005037843 ENSOTSG00005037845 GBGT1 (ENSOTSG00005037848) FAM187A (ENSOTSG00005037849) abi3a (ENSOTSG00005037851) ENSOTSG00005037854 mpp2a (ENSOTSG00005037858) pyya (ENSOTSG00005038286) ENSOTSG00005038289 rarab (ENSOTSG00005038295) ENSOTSG00005038323 ##22 ENSOTSG00005038324 psmd3 (ENSOTSG00005038327) ENSOTSG00005038347 PPP1R9B (ENSOTSG00005038348) col1a1a (ENSOTSG00005038360) ENSOTSG00005038366 ENSOTSG00005038368 nags (ENSOTSG00005038371) pdk2b (ENSOTSG00005038384) ENSOTSG00005039805 prr15la (ENSOTSG00005039810) copz2 (ENSOTSG00005039812) nfe2l1a (ENSOTSG00005039819) cbx1a (ENSOTSG00005039820) hoxb1a (ENSOTSG00005039822) Rainbow trout DUPLICATION Rainbow trout MODERN SPECIES 3 ENSOMYG00000043973 ENSOMYG00000052444 ENSOMYG00000074826 IFNe7 (ENSOMYG00000053253) ENSOMYG00000044009 ENSOMYG00000045566 ENSOMYG00000068996 ENSOMYG00000044035 ccdc103 (ENSOMYG00000044084) ENSOMYG00000044085 abi3a (ENSOMYG00000044089) mpp2a (ENSOMYG00000044101) pyya (ENSOMYG00000020294) ENSOMYG00000063860 rarab (ENSOMYG00000020321) ENSOMYG00000020401 ##22 ENSOMYG00000020492 ENSOMYG00000020511 ENSOMYG00000020541 ENSOMYG00000020551 col1a1 (ENSOMYG00000020647) ENSOMYG00000055072 ENSOMYG00000021024 ENSOMYG00000055738 ENSOMYG00000052424 ENSOMYG00000021069 ENSOMYG00000077184 ENSOMYG00000021165 ENSOMYG00000059908 prr15la (ENSOMYG00000021184) copz2 (ENSOMYG00000021226) Rainbow trout MODERN SPECIES 4 ENSOMYG00000075294 ENSOMYG00000057113 ENSOMYG00000049474 ifn2 (ENSOMYG00000041047) ENSOMYG00000041053 ENSOMYG00000071703 ENSOMYG00000058391 abi3a (ENSOMYG00000041067) ENSOMYG00000041082 ENSOMYG00000041095 pyya (ENSOMYG00000041112) ENSOMYG00000065554 ENSOMYG00000041116 ENSOMYG00000041123 ENSOMYG00000076957 ENSOMYG00000041126 ##22 ENSOMYG00000041133 ENSOMYG00000041141 csf-3 (ENSOMYG00000041149) ENSOMYG00000041182 col1a1a (ENSOMYG00000041314) ENSOMYG00000048632 ENSOMYG00000041320 nags (ENSOMYG00000041323) ENSOMYG00000041374 ENSOMYG00000041335 ENSOMYG00000077846 prr15la (ENSOMYG00000041419) copz2 (ENSOMYG00000003419) nfe2l1a (ENSOMYG00000003587) cbx1a (ENSOMYG00000003629) Huchen DUPLICATION Huchen MODERN SPECIES 834 rarab (ENSHHUG00000040244) ENSHHUG00000040169 ##22 ENSHHUG00000040164 psmd3 (ENSHHUG00000040137) ENSHHUG00000040131 PPP1R9B (ENSHHUG00000040115) ENSHHUG00000040109 col1a1a (ENSHHUG00000040062) Huchen MODERN SPECIES 977 ENSHHUG00000033993 abi3a (ENSHHUG00000033998) mpp2a (ENSHHUG00000034002) pyya (ENSHHUG00000034047) hspb9 (ENSHHUG00000034053) rarab (ENSHHUG00000034059) ENSHHUG00000034286 ##22 ENSHHUG00000034298 ##22 ENSHHUG00000034304 Acanthomorphata ANCESTRAL SPECIES 215 ENSGT00390000004690.a.a ENSGT00940000166711 ENSGT00390000003628.a.b ENSGT00940000163871.b ENSGT00940000155348.B.c ENSGT00940000160643.i ENSGT00670000098179.e ENSGT00940000165576.a.b ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 ENSGT00390000006679.b ENSGT00390000005602 ENSGT00940000156584.e.b ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00950000182860.a.a.a.ub.a ENSGT00940000159871.b.b Euacanthomorphacea ANCESTRAL SPECIES 108 ENSGT00390000004690.a.a ENSGT00940000166711 ENSGT00390000003628.a.b ENSGT00940000163871.b ENSGT00940000155348.B.c ENSGT00940000160643.i ENSGT00670000098179.e ENSGT00940000165576.a.b ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 ENSGT00390000006679.b ENSGT00390000005602 ENSGT01000000215678 ENSGT00940000156584.e.b ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00950000182860.a.a.a.ub.a ENSGT00940000159871.b.b Pinecone sodierfish MODERN SPECIES 22 ENSMMDG00005024361 ENSMMDG00005024360 ENSMMDG00005024359 ARL4D (ENSMMDG00005024358) ENSMMDG00005024356 G6PC1 (ENSMMDG00005024347) ENSMMDG00005024343 rpl23 (ENSMMDG00005024341) ENSMMDG00005024339 smarce1 (ENSMMDG00005024337) ENSMMDG00005024333 mpp2a (ENSMMDG00005024325) pyya (ENSMMDG00005024324) hspb9 (ENSMMDG00005024320) rarab (ENSMMDG00005024233) ENSMMDG00005024217 ##22 mettl22 (ENSMMDG00005024215) abat (ENSMMDG00005024214) ENSMMDG00005024213 ENSMMDG00005024211 ABCC1 (ENSMMDG00005020742) hao1 (ENSMMDG00005020376) lin7b (ENSMMDG00005020348) snrnp70 (ENSMMDG00005020341) ENSMMDG00005020340 AP2A1 (ENSMMDG00005020195) prmt1 (ENSMMDG00005017385) prrg2 (ENSMMDG00005017360) ENSMMDG00005017359 trpm4a (ENSMMDG00005017351) ENSMMDG00005017349 Percomorphaceae ANCESTRAL SPECIES 7 ENSGT00940000155360.A ENSGT00940000157635 ENSGT00390000010057 ENSGT00940000160830 ENSGT00940000153615.a.a.a ENSGT00730000114829 ENSGT00950000182805.a.a.a.a.b ENSGT00940000160409 ENSGT00940000156846 ENSGT00390000012992 ENSGT00950000183133.d ENSGT01030000234629.B ENSGT00940000158954 ENSGT00940000164475 ENSGT00940000165576.a.b ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b ##22 ENSGT00940000156038.a.a.d.a ENSGT01100000263525.a.b.a.a ENSGT00390000007688.b ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 ENSGT00940000162108 #25 ENSGT00510000050141.a ENSGT00950000182846.a.a.a.a.b ENSGT00940000160260 ENSGT00390000001958 ENSGT00940000158169.b ENSGT00940000157663 Percomorphaceae_B ANCESTRAL SPECIES 6 ENSGT00940000155360.A ENSGT00940000157635 ENSGT00390000010057 ENSGT00940000160830 ENSGT00940000153615.a.a.a ENSGT00730000114829 ENSGT00950000182805.a.a.a.a.b ENSGT00940000160409 ENSGT00940000156846 ENSGT00390000012992 ENSGT00950000183133.d ENSGT01030000234629.B ENSGT00940000158954 ENSGT00940000164475 ENSGT00940000163299.B.b.b.g.b ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00940000156038.a.a.d.a ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.b.d ##22 ENSGT00940000162108 #25 ENSGT00510000050141.a ENSGT00950000182846.a.a.a.a.b ENSGT00940000160260 ENSGT00390000001958 ENSGT00940000158169.b ENSGT00940000157663 ENSGT00940000154679 ENSGT00950000183011.d.c ENSGT00940000158399 Ovalentaria ANCESTRAL SPECIES 19 ENSGT00940000165084 ENSGT00940000165540 ENSGT00390000004923.B ENSGT00940000165962 ENSGT00940000154242.a.d ENSGT00940000161092 ENSGT00450000040279 ENSGT00390000014037.c ENSGT00940000157818 ENSGT01070000253766.C.o.a ENSGT00390000016168.a ENSGT00940000159097 ENSGT00560000077266.a ENSGT00940000159157 ENSGT00940000163299.B.b.b.g.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000166622 ENSGT00940000157260.s ENSGT00390000018318 ENSGT00950000182978.A.a.a ENSGT01030000234583.a.a.c.b.b ENSGT00940000160174 ENSGT00940000155712 ENSGT00940000159614 ENSGT00940000155726 ENSGT00940000156799 ENSGT00940000156274 ENSGT01080000257573 ENSGT00940000156248 ENSGT00940000159413 ENSGT00950000183215.c.a.a Atherinomorphae ANCESTRAL SPECIES 96 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 Oryzias ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Oryzias_a ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Chinese medaka MODERN SPECIES 374 edem2 (ENSOSIG00000011784) ENSOSIG00000013253 ENSOSIG00000013254 ##22 Oryzias_b ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Indian medaka MODERN SPECIES 23 ENSOMEG00000016640 pfkfb1 (ENSOMEG00000016573) ugt5e1 (ENSOMEG00000016471) ENSOMEG00000016460 SULF2 (ENSOMEG00000016431) mrgbp (ENSOMEG00000016272) hm13 (ENSOMEG00000016232) dnase1l1 (ENSOMEG00000016136) snx21 (ENSOMEG00000016098) ENSOMEG00000016071 DNAH5 (ENSOMEG00000016006) ENSOMEG00000015914 ENSOMEG00000015892 edem2 (ENSOMEG00000015851) ENSOMEG00000015804 ENSOMEG00000015787 ##22 ENSOMEG00000015772 ENSOMEG00000015763 IQSEC2 (ENSOMEG00000015738) ENSOMEG00000015663 ptk6b (ENSOMEG00000015610) ppdpfb (ENSOMEG00000015394) tpd52l2b (ENSOMEG00000015371) efhd2 (ENSOMEG00000000949) trim101 (ENSOMEG00000015285) DNAJC5 (ENSOMEG00000000662) ENSOMEG00000015241 arl8a (ENSOMEG00000015197) ENSOMEG00000015187 ENSOMEG00000015171 ENSOMEG00000015164 Cyprinodontiformes ANCESTRAL SPECIES 106 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 Aplocheiloidei ANCESTRAL SPECIES 515 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785.j Mangrove rivulus DUPLICATION Mangrove rivulus MODERN SPECIES 249 ENSKMAG00000012947 ENSKMAG00000012959 ENSKMAG00000012989 si:dkey-16p21.8 (ENSKMAG00000013074) prl (ENSKMAG00000013086) ENSKMAG00000013145 ##22 ENSKMAG00000013158 dusp3b (ENSKMAG00000013170) ENSKMAG00000013200 ENSKMAG00000013256 GAL3ST2 (ENSKMAG00000013266) thraa (ENSKMAG00000013299) nsfa (ENSKMAG00000013366) cdk5r1a (ENSKMAG00000013498) rpain (ENSKMAG00000013511) PSMD11 (ENSKMAG00000013540) DLX3 (ENSKMAG00000013672) dlx4a (ENSKMAG00000013682) Mangrove rivulus DUPLICATION Mangrove rivulus MODERN SPECIES 34 pa2g4a (ENSKMAG00000019577) crbn (ENSKMAG00000019594) ENSKMAG00000019614 vhl (ENSKMAG00000019624) tatdn2 (ENSKMAG00000019633) ccdc174 (ENSKMAG00000019648) ENSKMAG00000019698 prkcda (ENSKMAG00000019781) RFT1 (ENSKMAG00000019831) mustn1a (ENSKMAG00000019892) ruvbl1 (ENSKMAG00000019865) eefsec (ENSKMAG00000019907) ENSKMAG00000019922 ##22 ENSKMAG00000019931 ENSKMAG00000019940 ENSKMAG00000019953 ##22 GATA2 (ENSKMAG00000019972) ENSKMAG00000019993 ENSKMAG00000020013 arpc4 (ENSKMAG00000020041) pfkfb4b (ENSKMAG00000020063) MAPKAPK3 (ENSKMAG00000020118) uroc1 (ENSKMAG00000020141) CHCHD4 (ENSKMAG00000020212) sec61a1 (ENSKMAG00000020244) ip6k2b (ENSKMAG00000020280) ENSKMAG00000020290 inka1a (ENSKMAG00000020302) gnai2a (ENSKMAG00000020314) ENSKMAG00000020339 slc38a3a (ENSKMAG00000020355) Mangrove rivulus MODERN SPECIES 34 fkbp11 (ENSKMAG00000019505) arf3b (ENSKMAG00000019525) ERBB3 (ENSKMAG00000019542) pa2g4a (ENSKMAG00000019577) crbn (ENSKMAG00000019594) ENSKMAG00000019614 vhl (ENSKMAG00000019624) tatdn2 (ENSKMAG00000019633) ccdc174 (ENSKMAG00000019648) ENSKMAG00000019698 prkcda (ENSKMAG00000019781) RFT1 (ENSKMAG00000019831) mustn1a (ENSKMAG00000019892) ruvbl1 (ENSKMAG00000019865) eefsec (ENSKMAG00000019907) ENSKMAG00000019922 ##22 ENSKMAG00000019931 ENSKMAG00000019940 ENSKMAG00000019953 ##22 GATA2 (ENSKMAG00000019972) ENSKMAG00000019993 ENSKMAG00000020013 arpc4 (ENSKMAG00000020041) pfkfb4b (ENSKMAG00000020063) MAPKAPK3 (ENSKMAG00000020118) uroc1 (ENSKMAG00000020141) CHCHD4 (ENSKMAG00000020212) sec61a1 (ENSKMAG00000020244) ip6k2b (ENSKMAG00000020280) ENSKMAG00000020290 inka1a (ENSKMAG00000020302) Cyprinodontoidei ANCESTRAL SPECIES 140 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 NAME_4 ANCESTRAL SPECIES 660 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785.i.a.a Sheepshead minnow MODERN SPECIES 213 IQSEC2 (ENSCVAG00000022359) ENSCVAG00000022375 ENSCVAG00000022383 rfc2 (ENSCVAG00000022391) ENSCVAG00000022447 ENSCVAG00000022562 ENSCVAG00000022573 ENSCVAG00000022580 ENSCVAG00000022589 ENSCVAG00000022604 ##22 ENSCVAG00000022991 ENSCVAG00000000665 ENSCVAG00000023054 bop1 (ENSCVAG00000023063) wdyhv1 (ENSCVAG00000023068) lrp12 (ENSCVAG00000023096) ENSCVAG00000000601 ENSCVAG00000023185 jtb (ENSCVAG00000023194) glmp (ENSCVAG00000023197) cct3 (ENSCVAG00000023278) pdia8 (ENSCVAG00000023315) ENSCVAG00000023325 ints3 (ENSCVAG00000004832) npr1a (ENSCVAG00000004931) Mummichog MODERN SPECIES 2335 rnf126 (ENSFHEG00000002544) ENSFHEG00000002533 ENSFHEG00000002513 ENSFHEG00000002436 fzr1a (ENSFHEG00000002431) plekhj1 (ENSFHEG00000002406) sf3a2 (ENSFHEG00000002392) ENSFHEG00000002383 ONECUT3 (ENSFHEG00000002369) tcf3a (ENSFHEG00000002336) UQCR11 (ENSFHEG00000002286) mbd3a (ENSFHEG00000002278) MEX3D (ENSFHEG00000002269) ENSFHEG00000002261 ENSFHEG00000002251 ENSFHEG00000000071 ##22 ENSFHEG00000002201 BTBD2 (ENSFHEG00000002195) eef2b (ENSFHEG00000002184) ENSFHEG00000002170 ENSFHEG00000002150 sirt6 (ENSFHEG00000002142) cdc34b (ENSFHEG00000002128) cactin (ENSFHEG00000002121) sema4e (ENSFHEG00000002108) stap2a (ENSFHEG00000002099) sh3gl1a (ENSFHEG00000002093) ENSFHEG00000002082 rorcb (ENSFHEG00000002066) Poeciliinae ANCESTRAL SPECIES 83 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785.j ENSGT00950000183145.A.a ##22 ENSGT00950000183145.B.a.a.b.e.a ##22 Poecilia ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 NAME_6 ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Amazon molly MODERN SPECIES 528 ENSPFOG00000019528 fam50a (ENSPFOG00000019526) cav4b (ENSPFOG00000019523) ARHGAP4 (ENSPFOG00000019520) zgc:103759 (ENSPFOG00000019511) gss (ENSPFOG00000019503) pim1 (ENSPFOG00000019499) ENSPFOG00000019492 ENSPFOG00000019485 ##22 ENSPFOG00000023200 ENSPFOG00000019483 ENSPFOG00000019482 ENSPFOG00000019479 USP19 (ENSPFOG00000019469) lamb2 (ENSPFOG00000019460) ENSPFOG00000019449 ENSPFOG00000022175 ENSPFOG00000019447 ENSPFOG00000023239 TNNC2 (ENSPFOG00000019446) tnnc2.2 (ENSPFOG00000019443) taf13 (ENSPFOG00000020574) slc35c2 (ENSPFOG00000023112) ENSPFOG00000019431 Guppy DUPLICATION Guppy MODERN SPECIES 452 chrm5b (ENSPREG00000010510) aven (ENSPREG00000010520) ENSPREG00000010540 ENSPREG00000010552 FMN1 (ENSPREG00000010563) GREM1 (ENSPREG00000010584) ENSPREG00000010671 ENSPREG00000010689 ENSPREG00000010717 ENSPREG00000010777 xkr6b (ENSPREG00000010794) ccm2 (ENSPREG00000010819) fam167ab (ENSPREG00000010862) ENSPREG00000010871 sh3bgrl2 (ENSPREG00000010879) ENSPREG00000010900 ##22 ENSPREG00000010937 rps12 (ENSPREG00000010969) eya4 (ENSPREG00000011038) ENSPREG00000011133 tcf21 (ENSPREG00000011143) tbpl1 (ENSPREG00000011154) slc2a12 (ENSPREG00000011173) SGK1 (ENSPREG00000011205) aldh8a1 (ENSPREG00000011248) hbs1l (ENSPREG00000011270) myb (ENSPREG00000011303) PDE7B (ENSPREG00000011323) mtfr2 (ENSPREG00000011342) armc1l (ENSPREG00000011352) ENSPREG00000011368 Guppy MODERN SPECIES 459 krt18a.1 (ENSPREG00000002921) krt18a.2 (ENSPREG00000002930) ENSPREG00000002963 ENSPREG00000003038 ENSPREG00000003067 sars1 (ENSPREG00000003083) ENSPREG00000003133 fam50a (ENSPREG00000003148) cav4b (ENSPREG00000003174) ARHGAP4 (ENSPREG00000003195) zgc:103759 (ENSPREG00000003231) ENSPREG00000003255 gss (ENSPREG00000003479) ENSPREG00000003521 pim1 (ENSPREG00000003525) ENSPREG00000003547 ##22 ENSPREG00000003570 ENSPREG00000003579 ENSPREG00000003595 ENSPREG00000003611 ENSPREG00000003636 ENSPREG00000003647 USP19 (ENSPREG00000003678) ENSPREG00000003699 lamb2 (ENSPREG00000003719) ENSPREG00000003770 ENSPREG00000003854 ENSPREG00000003921 ENSPREG00000003934 tnnc2.2 (ENSPREG00000003959) taf13 (ENSPREG00000003999) Platyfish DUPLICATION Platyfish MODERN SPECIES krt5 (ENSXMAG00000023820) krt18a.1 (ENSXMAG00000026726) krt18a.2 (ENSXMAG00000016246) ENSXMAG00000026206 tmem106c (ENSXMAG00000027733) ENSXMAG00000016305 sars1 (ENSXMAG00000016138) ENSXMAG00000029856 fam50a (ENSXMAG00000023736) cav4b (ENSXMAG00000016311) ARHGAP4 (ENSXMAG00000016317) zgc:103759 (ENSXMAG00000016353) gss (ENSXMAG00000016356) pim1 (ENSXMAG00000021393) ENSXMAG00000026776 ENSXMAG00000027187 ##22 ENSXMAG00000028759 ##22 ENSXMAG00000025836 ENSXMAG00000016409 ENSXMAG00000020962 ENSXMAG00000030095 USP19 (ENSXMAG00000016414) lamb2 (ENSXMAG00000016442) ENSXMAG00000016516 ENSXMAG00000016526 ENSXMAG00000028546 TNNC2 (ENSXMAG00000028434) tnnc2.2 (ENSXMAG00000025748) taf13 (ENSXMAG00000019607) ENSXMAG00000025204 SNIP1 (ENSXMAG00000023091) Platyfish MODERN SPECIES 7 ENSXMAG00000025018 dctn5 (ENSXMAG00000001678) ndufab1b (ENSXMAG00000023363) TNRC6A (ENSXMAG00000001697) ENSXMAG00000029694 ENSXMAG00000024127 CACNG3 (ENSXMAG00000000194) PRKCB (ENSXMAG00000000201) CLEC16A (ENSXMAG00000000213) dexi (ENSXMAG00000020103) ENSXMAG00000000214 nubp1 (ENSXMAG00000000216) emp2 (ENSXMAG00000000221) ENSXMAG00000023152 ENSXMAG00000024436 ENSXMAG00000027227 ##22 ENSXMAG00000026830 ENSXMAG00000025438 ENSXMAG00000029300 GRIN2A (ENSXMAG00000000222) ENSXMAG00000000235 b9d1 (ENSXMAG00000000285) EPN2 (ENSXMAG00000012394) grapa (ENSXMAG00000012385) ENSXMAG00000021557 SPHK1 (ENSXMAG00000012369) ENSXMAG00000012344 ENSXMAG00000025879 CYGB (ENSXMAG00000030090) PRPSAP1 (ENSXMAG00000024339) rasd4 (ENSXMAG00000022071) Ovalentaria_B ANCESTRAL SPECIES 17 ENSGT00940000165084 ENSGT00940000165540 ENSGT00390000004923.B ENSGT00940000165962 ENSGT00940000154242.a.d ENSGT00940000161092 ENSGT00450000040279 ENSGT00390000014037.c ENSGT00940000157818 ENSGT01070000253766.C.o.a ENSGT00390000016168.a ENSGT00940000159097 ENSGT00560000077266.a ENSGT00940000159157 ENSGT00940000163299.B.b.b.g.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000166622 ENSGT00940000157260.s ENSGT00940000171557 ENSGT00390000018318 ENSGT00950000182978.A.a.a ENSGT01030000234583.a.a.c.b.b ENSGT00940000160174 ENSGT00940000155712 ENSGT00940000159614 ENSGT00940000155726 ENSGT00940000156799 ENSGT00940000156274 ENSGT01080000257573 ENSGT00390000018525.b ENSGT00730000111130 Cichlidae ANCESTRAL SPECIES 138 ENSGT00940000165576.a.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000166622 ENSGT00940000157260.s Midas cichlid MODERN SPECIES 43 rarab (ENSACIG00000011168) ENSACIG00000011415 ##22 ENSACIG00000011424 ##22 ENSACIG00000011440 ENSACIG00000011451 Pseudocrenilabrinae ANCESTRAL SPECIES 6 ENSGT00940000165084 ENSGT00940000165540 ENSGT00390000004923.B ENSGT00940000165962 ENSGT00940000154242.a.d ENSGT00940000161092 ENSGT00450000040279 ENSGT00390000014037.c ENSGT00940000157818 ENSGT01070000253766.C.o.a ENSGT00390000016168.a ENSGT00940000159097 ENSGT00560000077266.a ENSGT00940000159157 ENSGT00940000163299.B.b.b.g.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000166622.m.a ENSGT00940000157260.s ENSGT00940000171557 ENSGT00940000166622.m.b ENSGT00390000018318 ENSGT00950000182978.A.a.a ENSGT01030000234583.a.a.c.b.b ENSGT00940000160174 ENSGT00940000155712 ENSGT00940000159614 ENSGT00940000155726 ENSGT00940000156799 ENSGT00940000156274 ENSGT00940000156248 ENSGT00940000159413 Pseudocrenilabrinae_A ANCESTRAL SPECIES 3 ENSGT00940000165084 ENSGT00940000165540 ENSGT00390000004923.B ENSGT00940000165962 ENSGT00940000154242.a.d ENSGT00940000161092 ENSGT00450000040279 ENSGT00390000014037.c ENSGT00940000157818 ENSGT01070000253766.C.o.a ENSGT00390000016168.a ENSGT00940000159097 ENSGT00560000077266.a ENSGT00940000159157 ENSGT00940000163299.B.b.b.g.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000166622.m.a ENSGT00940000157260.s ENSGT00940000171557 ENSGT00940000166622.m.b ENSGT00390000018318 ENSGT00950000182978.A.a.a ENSGT01030000234583.a.a.c.b.b ENSGT00940000160174 ENSGT00940000155712 ENSGT00940000159614 ENSGT00940000155726 ENSGT00940000156799 ENSGT00940000156274 ENSGT00940000156248 ENSGT00940000159413 Haplochromini ANCESTRAL SPECIES 13 ENSGT00940000165084 ENSGT00940000165540 ENSGT00390000004923.B ENSGT00940000165962 ENSGT00940000154242.a.d ENSGT00940000161092 ENSGT00450000040279 ENSGT00390000014037.c ENSGT00940000157818 ENSGT01070000253766.C.o.a ENSGT00390000016168.a ENSGT00940000159097 ENSGT00560000077266.a ENSGT00940000159157 ENSGT00940000163299.B.b.b.g.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000166622.m.a ENSGT00940000157260.s ENSGT00940000166622.n ENSGT00940000171557 ENSGT00940000166622.m.b ENSGT00390000018318 ENSGT00950000182978.A.a.a ENSGT01030000234583.a.a.c.b.b ENSGT00940000160174 ENSGT00940000155712 ENSGT00940000159614 ENSGT00940000155726 ENSGT00940000156799 ENSGT00940000156274.m ENSGT00940000156248 Burton s mouthbrooder MODERN SPECIES 276 snx17 (ENSHBUG00000012794) znf513a (ENSHBUG00000012802) ENSHBUG00000012808 ENSHBUG00000012820 FNDC4 (ENSHBUG00000012823) ENSHBUG00000012831 ENSHBUG00000012851 sox7 (ENSHBUG00000012860) tdh (ENSHBUG00000012891) mtmr9 (ENSHBUG00000012918) xkr6b (ENSHBUG00000012925) ccm2 (ENSHBUG00000013012) fam167ab (ENSHBUG00000013027) ENSHBUG00000013037 sh3bgrl2 (ENSHBUG00000013062) ENSHBUG00000013092 ##22 ENSHBUG00000013097 ENSHBUG00000013114 ENSHBUG00000013129 rps12 (ENSHBUG00000013168) eya4 (ENSHBUG00000013228) tcf21 (ENSHBUG00000013252) tbpl1 (ENSHBUG00000013274) slc2a12 (ENSHBUG00000013283) SGK1 (ENSHBUG00000013374) aldh8a1 (ENSHBUG00000013404) hbs1l (ENSHBUG00000013424) myb (ENSHBUG00000013437) PDE7B (ENSHBUG00000013545) mtfr2 (ENSHBUG00000013560) armc1l (ENSHBUG00000013581) Haplochromini_A DUPLICATION Haplochromini_A DUPLICATION Haplochromini_A ANCESTRAL SPECIES 11 ENSGT00940000165084 ENSGT00940000165540 ENSGT00390000004923.B ENSGT00940000165962 ENSGT00940000154242.a.d ENSGT00940000161092 ENSGT00450000040279 ENSGT00390000014037.c ENSGT00940000157818 ENSGT01070000253766.C.o.a ENSGT00390000016168.a ENSGT00940000159097 ENSGT00560000077266.a ENSGT00940000159157 ENSGT00940000163299.B.b.b.g.b ENSGT00950000183145.A.b.a.s.a ##22 ENSGT00940000166622.m.a ENSGT00940000157260.s ENSGT00390000018318 ENSGT00950000182978.A.a.a ENSGT01030000234583.a.a.c.b.b ENSGT00940000160174 ENSGT00940000155712 ENSGT00940000159614 ENSGT00940000155726 ENSGT00940000156799 ENSGT00940000156274.m ENSGT00940000156248 ENSGT00940000159413 ENSGT00950000183215.c.a.a ENSGT00940000164948 P. nyererei MODERN SPECIES 456 ENSPNYG00000012828 ##22 ENSPNYG00000012892 ENSPNYG00000012911 ENSPNYG00000012929 rps12 (ENSPNYG00000012958) eya4 (ENSPNYG00000013081) ENSPNYG00000013220 tcf21 (ENSPNYG00000013233) tbpl1 (ENSPNYG00000013246) slc2a12 (ENSPNYG00000013266) SGK1 (ENSPNYG00000013283) aldh8a1 (ENSPNYG00000013334) hbs1l (ENSPNYG00000013360) myb (ENSPNYG00000013408) PDE7B (ENSPNYG00000013462) mtfr2 (ENSPNYG00000013503) Haplochromini_B ANCESTRAL SPECIES 22 ENSGT00940000165084 ENSGT00940000165540 ENSGT00390000004923.B ENSGT00940000165962 ENSGT00940000154242.a.d ENSGT00940000161092 ENSGT00450000040279 ENSGT00390000014037.c ENSGT00940000157818 ENSGT01070000253766.C.o.a ENSGT00390000016168.a ENSGT00940000159097 ENSGT00560000077266.a ENSGT00940000159157 ENSGT00940000163299.B.b.b.g.b ENSGT00950000183145.A.b.a.s.a ##22 ENSGT00940000166622.m.a ENSGT00940000157260.s ENSGT00950000183145.A.b.a.s.b ##22 ENSGT00390000018318 ENSGT00950000182978.A.a.a ENSGT00940000160174 ENSGT00940000155712 ENSGT00940000159614 ENSGT00940000155726 ENSGT00940000156799 ENSGT00940000156274.m ENSGT00940000156248 ENSGT00940000159413 ENSGT00950000183215.c.a.a ENSGT00940000164948 Zebra mbuna MODERN SPECIES 1097 znf513a (ENSMZEG00005016122) ENSMZEG00005016128 ENSMZEG00005016143 FNDC4 (ENSMZEG00005016152) ENSMZEG00005016158 sox7 (ENSMZEG00005016164) pinx1 (ENSMZEG00005016167) tdh (ENSMZEG00005016174) mtmr9 (ENSMZEG00005016186) xkr6b (ENSMZEG00005016192) ccm2 (ENSMZEG00005016209) fam167ab (ENSMZEG00005016216) ENSMZEG00005016219 sh3bgrl2 (ENSMZEG00005016222) ENSMZEG00005016226 ENSMZEG00005016228 ##22 ENSMZEG00005016232 ENSMZEG00005016236 ENSMZEG00005016248 ##22 rps12 (ENSMZEG00005016253) eya4 (ENSMZEG00005016269) tcf21 (ENSMZEG00005016294) zc3h14 (ENSMZEG00005016319) batf (ENSMZEG00005016329) ENSMZEG00005016331 FLVCR2 (ENSMZEG00005016338) TGFB3 (ENSMZEG00005016356) ENSMZEG00005016362 esrrb (ENSMZEG00005016372) YLPM1 (ENSMZEG00005016383) ENSMZEG00005016401 Haplochromini_A ANCESTRAL SPECIES ENSGT00950000183145.A.b.a.s.b ##22 Haplochromini_B ANCESTRAL SPECIES 22 ENSGT00390000004348 ENSGT00950000182985.b.a ENSGT00950000182941.a.a.a.a ENSGT00940000164948 ENSGT00950000183215.c.a.a ENSGT00940000159413 ENSGT00940000156248 ENSGT00940000156274.m ENSGT00940000156799 ENSGT00940000155726 ENSGT00940000159614 ENSGT00940000155712 ENSGT00940000160174 ENSGT00950000182978.A.a.a ENSGT00390000018318 ENSGT00950000183145.A.b.a.s.b ##22 ENSGT00940000157260.s ENSGT00940000166622.m.a ENSGT00950000183145.A.b.a.s.a ##22 ENSGT00940000163299.B.b.b.g.b ENSGT00940000159157 ENSGT00560000077266.a ENSGT00940000159097 ENSGT00390000016168.a ENSGT01070000253766.C.o.a ENSGT00940000157818 ENSGT00390000014037.c ENSGT00450000040279 ENSGT00940000161092 ENSGT00940000154242.a.d ENSGT00940000165962 Eastern happy MODERN SPECIES 6 ppp1r14c (ENSACLG00000009853) ENSACLG00000009863 armc1l (ENSACLG00000009933) mtfr2 (ENSACLG00000009948) PDE7B (ENSACLG00000010402) myb (ENSACLG00000010427) hbs1l (ENSACLG00000010469) aldh8a1 (ENSACLG00000010545) ENSACLG00000010561 SGK1 (ENSACLG00000010577) slc2a12 (ENSACLG00000010666) tbpl1 (ENSACLG00000010680) tcf21 (ENSACLG00000010780) eya4 (ENSACLG00000010790) rps12 (ENSACLG00000011016) ENSACLG00000011113 ##22 ENSACLG00000011117 ENSACLG00000011123 ENSACLG00000011149 sh3bgrl2 (ENSACLG00000011169) ENSACLG00000011185 fam167ab (ENSACLG00000011200) ccm2 (ENSACLG00000011216) xkr6b (ENSACLG00000011699) mtmr9 (ENSACLG00000011708) tdh (ENSACLG00000011746) pinx1 (ENSACLG00000011764) sox7 (ENSACLG00000011783) ENSACLG00000011792 ENSACLG00000011807 FNDC4 (ENSACLG00000011836) Zebra mbuna MODERN SPECIES 1097 jdp2b (ENSMZEG00005016423) ENSMZEG00005016419 DLST (ENSMZEG00005016409) ENSMZEG00005016401 YLPM1 (ENSMZEG00005016383) esrrb (ENSMZEG00005016372) ENSMZEG00005016362 TGFB3 (ENSMZEG00005016356) FLVCR2 (ENSMZEG00005016338) ENSMZEG00005016331 batf (ENSMZEG00005016329) zc3h14 (ENSMZEG00005016319) tcf21 (ENSMZEG00005016294) eya4 (ENSMZEG00005016269) rps12 (ENSMZEG00005016253) ENSMZEG00005016248 ##22 ENSMZEG00005016236 ENSMZEG00005016232 ENSMZEG00005016228 ##22 ENSMZEG00005016226 sh3bgrl2 (ENSMZEG00005016222) ENSMZEG00005016219 fam167ab (ENSMZEG00005016216) ccm2 (ENSMZEG00005016209) xkr6b (ENSMZEG00005016192) mtmr9 (ENSMZEG00005016186) tdh (ENSMZEG00005016174) pinx1 (ENSMZEG00005016167) sox7 (ENSMZEG00005016164) ENSMZEG00005016158 FNDC4 (ENSMZEG00005016152) Haplochromini_A ANCESTRAL SPECIES 43 ENSGT00940000174883.h ENSGT00940000164625.o.a ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00950000182995.e.a.b ENSGT01030000234785.j.c.a.a ENSGT01030000234785.j.c.b ENSGT00940000159997 ENSGT01030000234785.i.a ENSGT00950000183145.B.a.b.c.f ##22 ENSGT00940000165576.a.b ENSGT01030000234785.j.d ENSGT00950000183145.A.b.a.t ##22 ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00940000177763 ENSGT00390000003628.a.b ENSGT01100000263473.a.b.g.a.a.a.b.c.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT01100000263473.a.b.g.a.a.a.b.c.a ENSGT00940000155223.a.a ENSGT01030000234606.a.b.i.a ENSGT01030000234606.a.b.i.b ENSGT00390000018541 ENSGT00390000010157.b Haplochromini_B ANCESTRAL SPECIES 31 ENSGT01060000249103 ENSGT00940000177241 ENSGT00940000174883.h ENSGT00940000164625.o.a ENSGT00940000155311.A.a ENSGT00390000016209 ENSGT00940000160534 ENSGT00950000183197.a ENSGT00940000156447.a.b ENSGT00950000182995.e.a.b ENSGT01030000234785.j.c.a.a ENSGT01030000234785.j.c.b ENSGT01030000234785.i.a ENSGT00950000183145.B.a.b.c.f ##22 ENSGT00940000165576.a.b ENSGT00950000183145.A.b.a.t ##22 ENSGT00940000168246 ENSGT00940000160643.i ENSGT00940000155348.B.c ENSGT00940000163871.b ENSGT00940000177763 ENSGT00390000003628.a.b ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT01100000263473.a.b.g.a.a.a.b.c.a ENSGT00940000155223.a.a ENSGT01030000234606.a.b.i.a ENSGT01030000234606.a.b.i.b ENSGT00390000018541 ENSGT00390000010157.b ENSGT00940000160377 Eastern happy MODERN SPECIES 16 pex12 (ENSACLG00000006405) HDAC5 (ENSACLG00000005948) cyb561 (ENSACLG00000005935) TANC2 (ENSACLG00000005865) ENSACLG00000005854 ENSACLG00000005830 ENSACLG00000005822 ENSACLG00000005817 ENSACLG00000005808 ENSACLG00000005789 ##22 rarab (ENSACLG00000005781) ENSACLG00000005770 ENSACLG00000005762 ENSACLG00000005751 ENSACLG00000005748 ENSACLG00000005738 ##22 ENSACLG00000005326 pyya (ENSACLG00000005316) mpp2a (ENSACLG00000005284) ENSACLG00000005277 ENSACLG00000005263 ENSACLG00000005252 smarce1 (ENSACLG00000005218) ENSACLG00000005212 ENSACLG00000005205 ENSACLG00000005199 ENSACLG00000005194 ENSACLG00000005165 ENSACLG00000005016 ENSACLG00000005003 ENSACLG00000004993 Zebra mbuna MODERN SPECIES 120 ENSMZEG00005027796 ENSMZEG00005027793 KLHL10 (ENSMZEG00005027791) ENSMZEG00005027788 ENSMZEG00005027786 ENSMZEG00005027782 ##22 ENSMZEG00005027780 ##22 ENSMZEG00005027779 pyya (ENSMZEG00005027778) P. nyererei MODERN SPECIES 675 ENSPNYG00000012207 ##22 ENSPNYG00000012192 ENSPNYG00000012154 ##22 ENSPNYG00000012139 pyya (ENSPNYG00000012056) mpp2a (ENSPNYG00000012012) ENSPNYG00000011788 ENSPNYG00000011705 smarce1 (ENSPNYG00000011674) ENSPNYG00000011663 ENSPNYG00000011656 rpl23 (ENSPNYG00000011622) ENSPNYG00000011597 Percomorphaceae_C ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Percomorphaceae_D ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Anabantaria ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Anabantoidei ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Siamese fighting fish DUPLICATION Siamese fighting fish MODERN SPECIES 13 ENSBSLG00000025978 ENSBSLG00000025962 FNDC4 (ENSBSLG00000025947) ENSBSLG00000025697 sox7 (ENSBSLG00000025639) pinx1 (ENSBSLG00000025630) tdh (ENSBSLG00000025619) mtmr9 (ENSBSLG00000025612) xkr6b (ENSBSLG00000025608) ccm2 (ENSBSLG00000025580) fam167ab (ENSBSLG00000025572) ENSBSLG00000025569 ENSBSLG00000025567 sh3bgrl2 (ENSBSLG00000025566) ENSBSLG00000025547 ENSBSLG00000025535 ##22 ENSBSLG00000025533 ##22 ENSBSLG00000025530 ENSBSLG00000025526 ENSBSLG00000025525 ENSBSLG00000025521 ENSBSLG00000025435 ENSBSLG00000025027 rps12 (ENSBSLG00000025024) eya4 (ENSBSLG00000024236) tcf21 (ENSBSLG00000024175) tbpl1 (ENSBSLG00000024172) slc2a12 (ENSBSLG00000024164) DDX1 (ENSBSLG00000024072) nbas (ENSBSLG00000023241) lratd1 (ENSBSLG00000023173) Siamese fighting fish MODERN SPECIES 13 ENSBSLG00000025962 FNDC4 (ENSBSLG00000025947) ENSBSLG00000025697 sox7 (ENSBSLG00000025639) pinx1 (ENSBSLG00000025630) tdh (ENSBSLG00000025619) mtmr9 (ENSBSLG00000025612) xkr6b (ENSBSLG00000025608) ccm2 (ENSBSLG00000025580) fam167ab (ENSBSLG00000025572) ENSBSLG00000025569 ENSBSLG00000025567 sh3bgrl2 (ENSBSLG00000025566) ENSBSLG00000025547 ENSBSLG00000025535 ##22 ENSBSLG00000025533 ##22 ENSBSLG00000025530 ENSBSLG00000025526 ENSBSLG00000025525 ENSBSLG00000025521 ENSBSLG00000025435 ENSBSLG00000025027 rps12 (ENSBSLG00000025024) eya4 (ENSBSLG00000024236) tcf21 (ENSBSLG00000024175) tbpl1 (ENSBSLG00000024172) slc2a12 (ENSBSLG00000024164) DDX1 (ENSBSLG00000024072) nbas (ENSBSLG00000023241) lratd1 (ENSBSLG00000023173) MTLN (ENSBSLG00000023168) Eupercaria ANCESTRAL SPECIES 78 ENSGT00940000156038.a.a.d.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00950000183145.A.b.a ##22 Eupecaria_A ANCESTRAL SPECIES 85 ENSGT00940000156038.a.a.d.b ENSGT00950000183145.B.a.a.b.f ##22 ENSGT00950000183145.A.b.a ##22 Ballan wrasse MODERN SPECIES 551 NOTUM (ENSLBEG00000009362) aspscr1 (ENSLBEG00000009416) ENSLBEG00000009467 ENSLBEG00000009499 MAFG (ENSLBEG00000009556) ENSLBEG00000009572 SIRT7 (ENSLBEG00000009603) pcyt2 (ENSLBEG00000009673) gnav1 (ENSLBEG00000009754) npb (ENSLBEG00000009804) sgsh (ENSLBEG00000009864) slc26a11 (ENSLBEG00000009932) ENSLBEG00000009971 ENSLBEG00000010070 ENSLBEG00000010174 ##22 ENSLBEG00000010199 ##22 Eupecaria_B ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Eupecaria_C ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Gilthead seabream DUPLICATION Gilthead seabream MODERN SPECIES 14 ENSSAUG00010010302 ENSSAUG00010012439 sox7 (ENSSAUG00010012441) pinx1 (ENSSAUG00010012442) tdh (ENSSAUG00010012445) mtmr9 (ENSSAUG00010012449) xkr6b (ENSSAUG00010012454) ENSSAUG00010012457 ccm2 (ENSSAUG00010012464) fam167ab (ENSSAUG00010012599) ENSSAUG00010012600 sh3bgrl2 (ENSSAUG00010012603) ENSSAUG00010012604 ENSSAUG00010012625 ENSSAUG00010012633 ##22 ENSSAUG00010012647 ##22 ENSSAUG00010012660 rps12 (ENSSAUG00010012662) eya4 (ENSSAUG00010012727) ENSSAUG00010014844 ENSSAUG00010014846 ENSSAUG00010014847 ENSSAUG00010014849 ENSSAUG00010014850 ENSSAUG00010014852 tcf21 (ENSSAUG00010014853) tbpl1 (ENSSAUG00010014854) slc2a12 (ENSSAUG00010014862) SGK1 (ENSSAUG00010014872) aldh8a1 (ENSSAUG00010014983) hbs1l (ENSSAUG00010014998) Gilthead seabream MODERN SPECIES 14 FNDC4 (ENSSAUG00010010243) ENSSAUG00010010302 ENSSAUG00010012439 sox7 (ENSSAUG00010012441) pinx1 (ENSSAUG00010012442) tdh (ENSSAUG00010012445) mtmr9 (ENSSAUG00010012449) xkr6b (ENSSAUG00010012454) ENSSAUG00010012457 ccm2 (ENSSAUG00010012464) fam167ab (ENSSAUG00010012599) ENSSAUG00010012600 sh3bgrl2 (ENSSAUG00010012603) ENSSAUG00010012604 ENSSAUG00010012625 ENSSAUG00010012633 ##22 ENSSAUG00010012647 ##22 ENSSAUG00010012660 rps12 (ENSSAUG00010012662) eya4 (ENSSAUG00010012727) ENSSAUG00010014844 ENSSAUG00010014846 ENSSAUG00010014847 ENSSAUG00010014849 ENSSAUG00010014850 ENSSAUG00010014852 tcf21 (ENSSAUG00010014853) tbpl1 (ENSSAUG00010014854) slc2a12 (ENSSAUG00010014862) SGK1 (ENSSAUG00010014872) aldh8a1 (ENSSAUG00010014983) Perciformes ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Perciformes_a ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Channel bull blenny MODERN SPECIES TMC8 (ENSCGOG00000002433) TMC6 (ENSCGOG00000002418) NOTUM (ENSCGOG00000002389) aspscr1 (ENSCGOG00000002377) ENSCGOG00000002369 ENSCGOG00000002322 MAFG (ENSCGOG00000002319) ENSCGOG00000002317 ENSCGOG00000002313 SIRT7 (ENSCGOG00000002302) pcyt2 (ENSCGOG00000002036) gnav1 (ENSCGOG00000002014) npb (ENSCGOG00000002012) sgsh (ENSCGOG00000001955) slc26a11 (ENSCGOG00000001722) ENSCGOG00000001690 ##22 ENSCGOG00000001688 ENSCGOG00000001687 ENSCGOG00000001685 CC2D1A (ENSCGOG00000001637) mri1 (ENSCGOG00000001616) zgc:136864 (ENSCGOG00000001596) ENSCGOG00000001581 ENSCGOG00000001549 khsrp (ENSCGOG00000001537) DCAF15 (ENSCGOG00000001536) RFX1 (ENSCGOG00000001533) rln3b (ENSCGOG00000001529) TNPO2 (ENSCGOG00000001070) ENSCGOG00000001050 ENSCGOG00000001048 Otomorpha ANCESTRAL SPECIES 27 ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000154811.A ENSGT00940000163871.b ENSGT00940000155348.B.c ENSGT00940000160643.i ENSGT00670000098179.e ENSGT01050000245366 ENSGT00940000165576.a.b ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 ENSGT00940000154360.B ENSGT00940000153653.a.a ENSGT00390000017328.a.a ENSGT00940000160279.h ENSGT00940000156314.a ENSGT00550000074898 ENSGT00940000163935 ENSGT00940000154717.qc ENSGT00940000162814 ENSGT00940000167798 ENSGT00940000165499.a ENSGT00440000033919 ENSGT00940000162213 ENSGT00940000153840.a.a.a.b Clupeiformes ANCESTRAL SPECIES 897 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 Denticle herring MODERN SPECIES 17 cdk5r1a (ENSDCDG00000018178) ENSDCDG00000018183 CA10 (ENSDCDG00000018204) rpl23 (ENSDCDG00000018328) ENSDCDG00000018333 smarce1 (ENSDCDG00000018337) ccdc103 (ENSDCDG00000018343) FAM187A (ENSDCDG00000018347) abi3a (ENSDCDG00000018353) ENSDCDG00000018360 mpp2a (ENSDCDG00000018379) ENSDCDG00000018462 pyya (ENSDCDG00000018466) hspb9 (ENSDCDG00000018469) ENSDCDG00000018482 ENSDCDG00000018507 ##22 ENSDCDG00000018524 ENSDCDG00000018529 psmd3 (ENSDCDG00000018535) ENSDCDG00000018683 SAMD14 (ENSDCDG00000018692) ENSDCDG00000018713 kpnb1 (ENSDCDG00000018762) ENSDCDG00000018821 ENSDCDG00000018836 btr30 (ENSDCDG00000018840) UTP18 (ENSDCDG00000018851) nme2b.1 (ENSDCDG00000018933) MBTD1 (ENSDCDG00000019047) ENSDCDG00000019296 stx1b (ENSDCDG00000019314) Otophysi ANCESTRAL SPECIES 11 ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000154811.A ENSGT00940000163871.b ENSGT00940000155348.B.c ENSGT00940000160643.i ENSGT00670000098179.e ENSGT00940000165576.a.b ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 ENSGT00390000016335.g ENSGT00950000183207.b ENSGT00950000183150.a.a.a.d ENSGT00940000157744.c ENSGT00390000000050 ENSGT00630000091000 ENSGT00520000055626.b ENSGT00390000012483 ENSGT00940000164923.a.b ENSGT00940000159038.a.b ENSGT00940000159805 ENSGT00940000160236 ENSGT00940000162290 ENSGT00940000157290 Cyprinoidei ANCESTRAL SPECIES 1 ENSGT00940000159737.d ENSGT00940000157282 ENSGT00940000156054.d ENSGT00940000157521.a.b ENSGT00940000167103 ENSGT00940000160835 ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000154811.A ENSGT00940000155348.B.c ENSGT00940000160643.i ENSGT00670000098179.e ENSGT00940000165576.a.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000155140.s ENSGT00390000016335.g ENSGT00950000183207.b ENSGT00950000183150.a.a.a.d ENSGT00940000157744.c ENSGT00940000161979.B.o ENSGT00390000000050 ENSGT00630000091000 ENSGT00520000055626.b ENSGT00390000012483 ENSGT00940000164923.a.b ENSGT00940000159038.a.b ENSGT00940000159805 ENSGT00940000160236 ENSGT00940000162290 Cyprininae ANCESTRAL SPECIES 1564 ENSGT00940000165576.a.b.m.b.b ENSGT00950000183145.A.b.a ##22 Goldfish MODERN SPECIES 20 ENSCARG00000033937 ENSCARG00000033930 gprc5ba (ENSCARG00000033916) ENSCARG00000033904 ENSCARG00000033888 ENSCARG00000033844 ENSCARG00000033835 rbbp6 (ENSCARG00000033813) ENSCARG00000033783 prkcbb (ENSCARG00000032872) smarce1 (ENSCARG00000032688) CA10 (ENSCARG00000032431) pyya (ENSCARG00000032402) hspb9 (ENSCARG00000032399) rarab (ENSCARG00000032122) ENSCARG00000031857 ##22 ENSCARG00000031823 alkbh7 (ENSCARG00000031816) gtf2f1 (ENSCARG00000031771) ENSCARG00000031732 ENSCARG00000031724 ENSCARG00000031721 ENSCARG00000031710 prmt1 (ENSCARG00000031206) ENSCARG00000031172 ENSCARG00000031165 ENSCARG00000031158 ENSCARG00000031154 ENSCARG00000031150 ENSCARG00000031144 ENSCARG00000031138 Cyprininae_a ANCESTRAL SPECIES 1187 ENSGT00940000165576.a.b.m.b.b ENSGT00950000183145.A.b.a ##22 Common carp reference MODERN SPECIES 3 gtf2f1 (ENSCCRG00000061350) alkbh7 (ENSCCRG00000053992) ENSCCRG00000047766 ENSCCRG00000070231 ENSCCRG00000056571 sgsm3 (ENSCCRG00000036376) gtpbp1 (ENSCCRG00000072120) ENSCCRG00000070135 rpl23 (ENSCCRG00000072024) abi3a (ENSCCRG00000059284) mpp2a (ENSCCRG00000023127) pyya (ENSCCRG00000023117) hspb9 (ENSCCRG00000077885) rarab (ENSCCRG00000063234) ENSCCRG00000074011 ENSCCRG00000038595 ##22 ENSCCRG00000015274 ENSCCRG00000015285 aoc2 (ENSCCRG00000013198) ENSCCRG00000013203 ENSCCRG00000015203 ENSCCRG00000015295 rusf1 (ENSCCRG00000015305) ENSCCRG00000074582 ENSCCRG00000080330 pheta2 (ENSCCRG00000053574) mylpfa (ENSCCRG00000058291) tbc1d10b (ENSCCRG00000069567) hsd3b7 (ENSCCRG00000018139) ENSCCRG00000057657 fus (ENSCCRG00000043288) Golden-line barbel MODERN SPECIES 48 ier2a (ENSSGRG00000054662) NACC1 (ENSSGRG00000054663) ELFN2 (ENSSGRG00000054664) sgsm3 (ENSSGRG00000054665) gtpbp1 (ENSSGRG00000054670) ENSSGRG00000054679 rpl23 (ENSSGRG00000054681) ccdc103 (ENSSGRG00000054693) FAM187A (ENSSGRG00000054694) abi3a (ENSSGRG00000054697) mpp2a (ENSSGRG00000054710) pyya (ENSSGRG00000054787) pyya (ENSSGRG00000054788) hspb9 (ENSSGRG00000054789) rarab (ENSSGRG00000054792) ENSSGRG00000054800 ##22 CASP6 (ENSSGRG00000054802) ENSSGRG00000054804 aoc2 (ENSSGRG00000054805) G6PC1 (ENSSGRG00000054808) KAT7 (ENSSGRG00000054830) ENSSGRG00000054875 cd2bp2 (ENSSGRG00000054876) pheta2 (ENSSGRG00000054877) mylpfa (ENSSGRG00000054878) tbc1d10b (ENSSGRG00000054879) hsd3b7 (ENSSGRG00000054880) ENSSGRG00000054881 ENSSGRG00000054882 fus (ENSSGRG00000054883) ENSSGRG00000054884 Characiphysae ANCESTRAL SPECIES 105 ENSGT00390000010721.b ENSGT00940000166739 ENSGT00390000017606.a.a ENSGT01070000253895 ENSGT01050000244893.c.a.b.g ENSGT00940000166711 ENSGT00390000004690.a.a ENSGT00390000004038 ENSGT00530000063991.a ENSGT00940000154811.A ENSGT00940000163871.b ENSGT00940000155348.B.c ENSGT00940000160643.i ENSGT00670000098179.e ENSGT00950000183145.B.a.a.b ##22 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 Characiphysae_b ANCESTRAL SPECIES 348 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 Characoidei ANCESTRAL SPECIES 493 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT01030000234785 Red-bellied piranha DUPLICATION Red-bellied piranha DUPLICATION Red-bellied piranha DUPLICATION Red-bellied piranha DUPLICATION Red-bellied piranha MODERN SPECIES 897 ENSPNAG00000020149 ##22 ENSPNAG00000021210 ##22 Red-bellied piranha MODERN SPECIES 1264 ENSPNAG00000004363 ENSPNAG00000009154 ##22 ENSPNAG00000009162 ##22 ENSPNAG00000009211 ##22 Red-bellied piranha DUPLICATION Red-bellied piranha MODERN SPECIES 1264 ENSPNAG00000004363 ENSPNAG00000009154 ##22 ENSPNAG00000009162 ##22 ENSPNAG00000009211 ##22 Red-bellied piranha MODERN SPECIES 1264 ENSPNAG00000004363 ENSPNAG00000009154 ##22 ENSPNAG00000009162 ##22 ENSPNAG00000009211 ##22 Red-bellied piranha MODERN SPECIES 897 ENSPNAG00000020149 ##22 ENSPNAG00000021210 ##22 Red-bellied piranha MODERN SPECIES 604 ENSPNAG00000024935 ##22 ENSPNAG00000024879 ENSPNAG00000024861 Mexicana tetra DUPLICATION Mexicana tetra MODERN SPECIES 745 rarab (ENSAMXG00000010541) ENSAMXG00000040953 ENSAMXG00000040834 ##22 Mexicana tetra MODERN SPECIES 892 ENSAMXG00000030886 ##22 ENSAMXG00000036531 ##22 Mexicana tetra DUPLICATION Mexicana tetra DUPLICATION Mexicana tetra MODERN SPECIES 892 ENSAMXG00000030886 ##22 ENSAMXG00000036531 ##22 Mexicana tetra MODERN SPECIES 1379 ENSAMXG00000042477 ENSAMXG00000039257 ##22 ENSAMXG00000042347 #25 ENSAMXG00000029203 ##22 ENSAMXG00000038680 ENSAMXG00000031694 ENSAMXG00000040529 ENSAMXG00000012920 ENSAMXG00000040729 Mexicana tetra MODERN SPECIES 1379 ENSAMXG00000042477 ENSAMXG00000039257 ##22 ENSAMXG00000042347 #25 ENSAMXG00000029203 ##22 ENSAMXG00000038680 ENSAMXG00000031694 ENSAMXG00000040529 ENSAMXG00000012920 ENSAMXG00000040729 Mexicana tetra DUPLICATION Mexicana tetra DUPLICATION Mexicana tetra MODERN SPECIES 871 ENSAMXG00000041576 ENSAMXG00000033004 ##22 ENSAMXG00000018425 Mexicana tetra MODERN SPECIES 457 ENSAMXG00000001226 ##22 ENSAMXG00000029305 ##22 ENSAMXG00000038322 ENSAMXG00000033397 #25 ENSAMXG00000036003 ##22 ENSAMXG00000001259 aoc2 (ENSAMXG00000024339) G6PC1 (ENSAMXG00000031108) ENSAMXG00000037103 Mexicana tetra MODERN SPECIES 457 ENSAMXG00000037103 G6PC1 (ENSAMXG00000031108) aoc2 (ENSAMXG00000024339) ENSAMXG00000001259 ENSAMXG00000036003 ##22 ENSAMXG00000033397 #25 ENSAMXG00000038322 ENSAMXG00000029305 ##22 ENSAMXG00000001226 ##22 Channel catfish DUPLICATION Channel catfish DUPLICATION Channel catfish DUPLICATION Channel catfish DUPLICATION Channel catfish MODERN SPECIES 11 ifi35 (ENSIPUG00000009902) ENSIPUG00000009927 rundc1 (ENSIPUG00000010030) rpl27 (ENSIPUG00000010054) slc25a39 (ENSIPUG00000010088) aoc2 (ENSIPUG00000010118) ENSIPUG00000010132 ENSIPUG00000010162 ##22 ENSIPUG00000010176 ##22 ENSIPUG00000010190 ##22 ENSIPUG00000010206 ENSIPUG00000010217 ENSIPUG00000010236 ENSIPUG00000010370 ##22 ENSIPUG00000010383 ##22 ENSIPUG00000010403 ##22 ENSIPUG00000010432 ENSIPUG00000010454 ##22 hspb9 (ENSIPUG00000010493) pyya (ENSIPUG00000010498) Mpp2 (ENSIPUG00000010516) abi3a (ENSIPUG00000010559) FAM187A (ENSIPUG00000010618) ccdc103 (ENSIPUG00000010622) rpl23 (ENSIPUG00000010633) ENSIPUG00000010660 cacng2a (ENSIPUG00000010668) rpl3 (ENSIPUG00000010685) ENSIPUG00000010807 ENSIPUG00000010832 znf771 (ENSIPUG00000010897) Channel catfish MODERN SPECIES 101 ENSIPUG00000007566 ##22 ENSIPUG00000007573 Channel catfish MODERN SPECIES 98 ENSIPUG00000007395 ##22 Channel catfish MODERN SPECIES 11 ENSIPUG00000010949 c2h16orf58 (ENSIPUG00000010907) znf771 (ENSIPUG00000010897) ENSIPUG00000010832 ENSIPUG00000010807 rpl3 (ENSIPUG00000010685) cacng2a (ENSIPUG00000010668) ENSIPUG00000010660 rpl23 (ENSIPUG00000010633) ccdc103 (ENSIPUG00000010622) FAM187A (ENSIPUG00000010618) abi3a (ENSIPUG00000010559) Mpp2 (ENSIPUG00000010516) pyya (ENSIPUG00000010498) hspb9 (ENSIPUG00000010493) ENSIPUG00000010454 ##22 ENSIPUG00000010432 ENSIPUG00000010403 ##22 ENSIPUG00000010383 ##22 ENSIPUG00000010370 ##22 ENSIPUG00000010236 ENSIPUG00000010217 ENSIPUG00000010206 ENSIPUG00000010190 ##22 ENSIPUG00000010176 ##22 ENSIPUG00000010162 ##22 ENSIPUG00000010132 aoc2 (ENSIPUG00000010118) slc25a39 (ENSIPUG00000010088) rpl27 (ENSIPUG00000010054) rundc1 (ENSIPUG00000010030) Channel catfish MODERN SPECIES 11 ccdc103 (ENSIPUG00000010622) FAM187A (ENSIPUG00000010618) abi3a (ENSIPUG00000010559) Mpp2 (ENSIPUG00000010516) pyya (ENSIPUG00000010498) hspb9 (ENSIPUG00000010493) ENSIPUG00000010454 ##22 ENSIPUG00000010432 ENSIPUG00000010403 ##22 ENSIPUG00000010383 ##22 ENSIPUG00000010370 ##22 ENSIPUG00000010236 ENSIPUG00000010217 ENSIPUG00000010206 ENSIPUG00000010190 ##22 ENSIPUG00000010176 ##22 ENSIPUG00000010162 ##22 ENSIPUG00000010132 aoc2 (ENSIPUG00000010118) slc25a39 (ENSIPUG00000010088) rpl27 (ENSIPUG00000010054) rundc1 (ENSIPUG00000010030) ENSIPUG00000009927 ifi35 (ENSIPUG00000009902) BCAT1 (ENSIPUG00000009853) hsd17b14 (ENSIPUG00000009835) ENSIPUG00000009830 ENSIPUG00000009812 ENSIPUG00000009806 PPFIA3 (ENSIPUG00000009786) nucb1 (ENSIPUG00000009663) Channel catfish MODERN SPECIES 11 FAM187A (ENSIPUG00000010618) abi3a (ENSIPUG00000010559) Mpp2 (ENSIPUG00000010516) pyya (ENSIPUG00000010498) hspb9 (ENSIPUG00000010493) ENSIPUG00000010454 ##22 ENSIPUG00000010432 ENSIPUG00000010403 ##22 ENSIPUG00000010383 ##22 ENSIPUG00000010370 ##22 ENSIPUG00000010236 ENSIPUG00000010217 ENSIPUG00000010206 ENSIPUG00000010190 ##22 ENSIPUG00000010176 ##22 ENSIPUG00000010162 ##22 ENSIPUG00000010132 aoc2 (ENSIPUG00000010118) slc25a39 (ENSIPUG00000010088) rpl27 (ENSIPUG00000010054) rundc1 (ENSIPUG00000010030) ENSIPUG00000009927 ifi35 (ENSIPUG00000009902) BCAT1 (ENSIPUG00000009853) hsd17b14 (ENSIPUG00000009835) ENSIPUG00000009830 ENSIPUG00000009812 ENSIPUG00000009806 PPFIA3 (ENSIPUG00000009786) nucb1 (ENSIPUG00000009663) ccndx (ENSIPUG00000009637) Channel catfish MODERN SPECIES 11 ENSIPUG00000010832 ENSIPUG00000010807 rpl3 (ENSIPUG00000010685) cacng2a (ENSIPUG00000010668) ENSIPUG00000010660 rpl23 (ENSIPUG00000010633) ccdc103 (ENSIPUG00000010622) FAM187A (ENSIPUG00000010618) abi3a (ENSIPUG00000010559) Mpp2 (ENSIPUG00000010516) pyya (ENSIPUG00000010498) hspb9 (ENSIPUG00000010493) ENSIPUG00000010454 ##22 ENSIPUG00000010432 ENSIPUG00000010403 ##22 ENSIPUG00000010383 ##22 ENSIPUG00000010370 ##22 ENSIPUG00000010236 ENSIPUG00000010217 ENSIPUG00000010206 ENSIPUG00000010190 ##22 ENSIPUG00000010176 ##22 ENSIPUG00000010162 ##22 ENSIPUG00000010132 aoc2 (ENSIPUG00000010118) slc25a39 (ENSIPUG00000010088) rpl27 (ENSIPUG00000010054) rundc1 (ENSIPUG00000010030) ENSIPUG00000009927 ifi35 (ENSIPUG00000009902) BCAT1 (ENSIPUG00000009853) Sarcopterygii ANCESTRAL SPECIES 13 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000165188 ENSGT00940000157052 #18 ENSGT00390000010398.A ENSGT00940000169682 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00950000183145.B.a.a ##22 ENSGT00950000183145.B.a.b ##22 ENSGT00940000162108 #25 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Tetrapoda ANCESTRAL SPECIES 398 ENSGT00940000163882 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 Amniota ANCESTRAL SPECIES 10 ENSGT00940000160482 #7 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 Sauria ANCESTRAL SPECIES 8 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT01030000235500 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Archelosauria ANCESTRAL SPECIES 10 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.C ##22 ENSGT01030000235500 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Cryptodira ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Testudinoidea ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Emydidae ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 painted turtle MODERN SPECIES 933 LIMK1 (ENSCPBG00000015913) ENSCPBG00000015911 ENSCPBG00000015910 ##22 ENSCPBG00000015909 ENSCPBG00000015908 ENSCPBG00000015905 ENSCPBG00000015903 CLDN4 (ENSCPBG00000015896) ENSCPBG00000015895 ABHD11 (ENSCPBG00000015894) ENSCPBG00000015892 MTMR4 (ENSCPBG00000015880) HSF5 (ENSCPBG00000015877) SUPT4H1 (ENSCPBG00000015876) ENSCPBG00000015874 ENSCPBG00000015868 Archosauria ANCESTRAL SPECIES 7 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000163882 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Aves ANCESTRAL SPECIES 6 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000163882.e.a ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b.a ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Neognathae ANCESTRAL SPECIES 7 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.e.b ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT01030000235500 ENSGT00950000183145.C ##22 ENSGT00940000163882.e.a ENSGT00950000183145.A.b.a ##22 ENSGT00940000154525.b.a #27 ENSGT00940000163882.f ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Galloanserae ANCESTRAL SPECIES 233 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b.a.a.a Anatidae ANCESTRAL SPECIES 258 ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b.a.a.a Duck MODERN SPECIES 1627 ENSAPLG00000030668 ##22 ENSAPLG00000010096 ENSAPLG00000022654 ENSAPLG00000025847 ENSAPLG00000010197 ENSAPLG00000020109 ENSAPLG00000010298 ENSAPLG00000019282 ENSAPLG00000007854 ENSAPLG00000019915 ENSAPLG00000017596 ENSAPLG00000010865 ENSAPLG00000027253 Pink-footed goose MODERN SPECIES 455 ENSABRG00000019152 ENSABRG00000019145 ##22 ENSABRG00000019129 ENSABRG00000019116 ENSABRG00000019113 ENSABRG00000019107 ENSABRG00000019095 ENSABRG00000019088 ENSABRG00000019085 ENSABRG00000019071 Phasianidae ANCESTRAL SPECIES 6 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00940000163882.e.a ENSGT00950000183145.C.b ##22 ENSGT00940000163882.f ENSGT00950000183145.A.b.a ##22 ENSGT00940000154525.b.a.d #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000159002 ENSGT00530000063371.B Phasianidae_b ANCESTRAL SPECIES 6 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.E #22 ENSGT00940000163882.e.a ENSGT00950000183145.A.b.a ##22 ENSGT00940000154525.b.a.d #27 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000159002 ENSGT00530000063371.B Chicken MODERN SPECIES 7 ENSGALG00010003356 ENSGALG00010001806 ENSGALG00010003351 ENSGALG00010001804 ENSGALG00010003346 ENSGALG00010003333 ENSGALG00010003324 ENSGALG00010003311 ENSGALG00010003301 ENSGALG00010003294 ENSGALG00010003287 ENSGALG00010003277 ENSGALG00010001795 ENSGALG00010001792 ENSGALG00010001779 ENSGALG00010003661 ##22 ENSGALG00010003671 ENSGALG00010001769 ENSGALG00010001766 ENSGALG00010003270 ENSGALG00010001763 ENSGALG00010001756 ENSGALG00010003267 ENSGALG00010003264 ENSGALG00010001735 ENSGALG00010001734 ENSGALG00010001719 ENSGALG00010001718 Turkey MODERN SPECIES 28 ABRAXAS2 (ENSMGAG00000011692) ENSMGAG00000011686 ENSMGAG00000011677 ENSMGAG00000011675 ENSMGAG00000011673 ENSMGAG00000011662 GPR26 (ENSMGAG00000011624) ENSMGAG00000011617 ENSMGAG00000011619 HMX3 (ENSMGAG00000011613) ACADSB (ENSMGAG00000011603) ENSMGAG00000017710 ENSMGAG00000011599 ENSMGAG00000011584 ENSMGAG00000011564 ##22 ENSMGAG00000022374 ##22 ENSMGAG00000011568 #27 ENSMGAG00000011580 #29 ENSMGAG00000011551 #21 ENSMGAG00000011530 #20 ENSMGAG00000011516 #18 ENSMGAG00000011490 #15 ENSMGAG00000011508 ENSMGAG00000011456 #14 ENSMGAG00000022256 #13 ENSMGAG00000018783 #13 ENSMGAG00000011434 #12 SEC23IP (ENSMGAG00000011411) #11 ENSMGAG00000017041 #9 ENSMGAG00000011398 #10 BAG3 (ENSMGAG00000011390) #8 Neognathae_b ANCESTRAL SPECIES 117 ENSGT00940000164475.a.b.a.b.a.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b.a.b Passeriformes ANCESTRAL SPECIES 242 ENSGT00940000163882.e.a ENSGT00950000183145.A.b.a ##22 Passeriformes_d ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Passeriformes_g ANCESTRAL SPECIES ENSGT00950000183128.C ENSGT00940000157848 ENSGT00940000160477 ENSGT00390000011163 ENSGT00940000156521.b ENSGT00390000000972 ENSGT00390000003450 ENSGT00940000160201 ENSGT00390000000020.b ENSGT00940000163889 ENSGT00390000010641 ENSGT00940000159796 ENSGT00940000161522 ENSGT00390000001289.a ENSGT00950000183145.A.a.h ##22 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.A.a.g ##22 ENSGT00940000159520.h.r ENSGT00730000112245 ENSGT00390000010778 ENSGT00390000017361 ENSGT00940000154675 ENSGT00390000005097 ENSGT00530000063722.b ENSGT00530000063822.a.b ENSGT00390000003145 ENSGT00950000183011.c.a.b ENSGT00940000154380.b ENSGT00940000155385 ENSGT00950000183017.b.a ENSGT00940000157939 Passeroidea ANCESTRAL SPECIES 1 ENSGT00950000183128.C ENSGT00940000157848 ENSGT00940000160477 ENSGT00390000011163 ENSGT00940000156521.b ENSGT00390000000972 ENSGT00390000003450 ENSGT00940000160201 ENSGT00390000000020.b ENSGT00940000163889 ENSGT00390000010641 ENSGT00940000159796 ENSGT00940000161522 ENSGT00390000001289.a ENSGT00950000183145.A.a.h ##22 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.A.a.g ##22 ENSGT00940000159520.h.r ENSGT00730000112245 ENSGT00390000010778 ENSGT00390000017361 ENSGT00940000154675 ENSGT00390000005097 ENSGT00530000063722.b ENSGT00530000063822.a.b ENSGT00390000003145 ENSGT00950000183011.c.a.b ENSGT00940000154380.b ENSGT00940000155385 ENSGT00950000183017.b.a ENSGT00940000157939 Zebra finch MODERN SPECIES 27 ENSTGUG00000026950 ENSTGUG00000007446 MAX (ENSTGUG00000023132) FNTB (ENSTGUG00000007483) RAB15 (ENSTGUG00000020981) CHURC1 (ENSTGUG00000026206) PLEKHG3 (ENSTGUG00000007578) NUP160 (ENSTGUG00000007581) FNBP4 (ENSTGUG00000007629) AGBL2 (ENSTGUG00000007643) MTCH2 (ENSTGUG00000007652) NUDT8 (ENSTGUG00000007694) ENSTGUG00000007725 CDK2AP2 (ENSTGUG00000022260) AIP (ENSTGUG00000007764) ENSTGUG00000007776 ##22 ENSTGUG00000007792 ##22 ENSTGUG00000007810 ENSTGUG00000016693 ##22 ENSTGUG00000020021 ENSTGUG00000007815 TALDO1 (ENSTGUG00000007821) EIF4G2 (ENSTGUG00000007840) CTR9 (ENSTGUG00000007907) IRAG1 (ENSTGUG00000007955) LYVE1 (ENSTGUG00000007979) RNF141 (ENSTGUG00000020047) AMPD3 (ENSTGUG00000008001) ENSTGUG00000022953 ENSTGUG00000008020 SBF2 (ENSTGUG00000008025) Great tit MODERN SPECIES 26 INPP5F (ENSPMJG00000005637) #9 MCMBP (ENSPMJG00000005642) #10 SEC23IP (ENSPMJG00000005643) #11 PLPP4 (ENSPMJG00000005646) #12 WDR11 (ENSPMJG00000005652) #13 FGFR2 (ENSPMJG00000005686) #14 ATE1 (ENSPMJG00000005695) #15 NSMCE4A (ENSPMJG00000005697) #17 TACC2 (ENSPMJG00000005700) #18 PLEKHA1 (ENSPMJG00000005718) #20 HTRA1 (ENSPMJG00000005725) #21 ENSPMJG00000005727 ENSPMJG00000005730 ENSPMJG00000005731 ##22 ENSPMJG00000005732 ENSPMJG00000005734 ##22 C10orf88 (ENSPMJG00000005738) #29 ENSPMJG00000005740 IKZF5 (ENSPMJG00000005744) PSTK (ENSPMJG00000005749) ACADSB (ENSPMJG00000005752) HMX3 (ENSPMJG00000005758) HMX2 (ENSPMJG00000005760) BUB3 (ENSPMJG00000005761) GPR26 (ENSPMJG00000005767) CPXM2 (ENSPMJG00000005769) CHST15 (ENSPMJG00000005775) ENSPMJG00000005788 OAT (ENSPMJG00000005814) LHPP (ENSPMJG00000005818) FAM53B (ENSPMJG00000005835) Neognathae_c ANCESTRAL SPECIES 118 ENSGT00940000164475.a.b.a.b.a.b ENSGT00950000183145.A.b.a ##22 ENSGT00940000164475.a.b.b.a.b Kakapo DUPLICATION Kakapo MODERN SPECIES 58 IFT22 (ENSSHBG00005012410) COL26A1 (ENSSHBG00005012425) ENSSHBG00005012468 ENSSHBG00005012710 CUX1 (ENSSHBG00005012729) ENSSHBG00005012775 SH2B2 (ENSSHBG00005012803) PRKRIP1 (ENSSHBG00005012822) ORAI2 (ENSSHBG00005012839) ALKBH4 (ENSSHBG00005012852) LRWD1 (ENSSHBG00005012877) ENSSHBG00005012895 ENSSHBG00005012906 UPK3B (ENSSHBG00005012933) DTX2 (ENSSHBG00005012960) ENSSHBG00005012984 ##22 ENSSHBG00005012997 ##22 YWHAG (ENSSHBG00005013017) HSPB1 (ENSSHBG00005013023) ENSSHBG00005013030 SRRM3 (ENSSHBG00005013038) MDH2 (ENSSHBG00005000746) ENSSHBG00005000755 TMEM120A (ENSSHBG00005000765) POR (ENSSHBG00005005716) RHBDD2 (ENSSHBG00005005771) TAF15 (ENSSHBG00005005797) MMP28 (ENSSHBG00005005940) ENSSHBG00005005958 RASL10B (ENSSHBG00005006000) AP2B1 (ENSSHBG00005006021) Kakapo MODERN SPECIES 18 ENSSHBG00005008940 ENSSHBG00005008934 ##22 ENSSHBG00005008918 ZNF628 (ENSSHBG00005008886) ENSSHBG00005008865 ENSSHBG00005008852 ##22 ENSSHBG00005008847 ENSSHBG00005008827 ENSSHBG00005008810 ENSSHBG00005008804 ENSSHBG00005008800 ENSSHBG00005008795 ENSSHBG00005008787 CHMP2A (ENSSHBG00005008783) UBE2M (ENSSHBG00005008772) TRIM28 (ENSSHBG00005008758) ZBTB45 (ENSSHBG00005008753) NOSIP (ENSSHBG00005008752) PRR12 (ENSSHBG00005008740) Lepidosauria ANCESTRAL SPECIES 8 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 tuatara MODERN SPECIES 1695 ENSSPUG00000015750 #13 ENSSPUG00000015757 ENSSPUG00000015768 #13 ENSSPUG00000015788 #14 ENSSPUG00000015804 #14 ATE1 (ENSSPUG00000015827) #15 NSMCE4A (ENSSPUG00000015836) #17 ENSSPUG00000015863 #18 BTBD16 (ENSSPUG00000015930) #19 ENSSPUG00000015948 PLEKHA1 (ENSSPUG00000015964) #20 HTRA1 (ENSSPUG00000015982) #21 ENSSPUG00000016067 ##22 C10orf88 (ENSSPUG00000016259) #29 ENSSPUG00000016310 PSTK (ENSSPUG00000016345) IKZF5 (ENSSPUG00000016359) ACADSB (ENSSPUG00000016372) HMX3 (ENSSPUG00000016381) ENSSPUG00000016401 ENSSPUG00000016416 Episquamata ANCESTRAL SPECIES 2 ENSGT00940000160482 #7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Toxicofera ANCESTRAL SPECIES 2 ENSGT00940000160482 #7 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 ENSGT00940000162535 Elapidae ANCESTRAL SPECIES 4 ENSGT00940000161426 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00940000166847 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a.b ENSGT00950000183001.a.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Indian cobra MODERN SPECIES 3 ENSNNAG00000003714 BUB3 (ENSNNAG00000003731) HMX2 (ENSNNAG00000003744) HMX3 (ENSNNAG00000003758) ACADSB (ENSNNAG00000003781) IKZF5 (ENSNNAG00000003799) PSTK (ENSNNAG00000003820) ENSNNAG00000003842 C10orf88 (ENSNNAG00000003898) #29 ENSNNAG00000003929 ENSNNAG00000003976 ##22 ENSNNAG00000004497 ##22 ENSNNAG00000004527 #22 ENSNNAG00000004649 ENSNNAG00000004671 ##22 ENSNNAG00000004693 ##22 HTRA1 (ENSNNAG00000004719) #21 PLEKHA1 (ENSNNAG00000004758) #20 BTBD16 (ENSNNAG00000004840) #19 TACC2 (ENSNNAG00000004956) #18 ENSNNAG00000005253 ATE1 (ENSNNAG00000005291) #15 FGFR2 (ENSNNAG00000005354) #14 WDR11 (ENSNNAG00000005498) #13 PLPP4 (ENSNNAG00000005540) #12 SEC23IP (ENSNNAG00000005588) #11 MCMBP (ENSNNAG00000005668) #10 INPP5F (ENSNNAG00000005737) #9 BAG3 (ENSNNAG00000005857) #8 ENSNNAG00000005871 RGS10 (ENSNNAG00000005939) Elapidae_a ANCESTRAL SPECIES ENSGT00940000161426 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00940000154525.b.a #27 ENSGT01030000236508 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Acanthophiinae ANCESTRAL SPECIES 1 ENSGT00940000161426 ENSGT00940000154962.B ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00940000154525.b.a #27 ENSGT01030000236508 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Mainland tiger snake MODERN SPECIES INPP5F (ENSNSUG00000001107) #9 MCMBP (ENSNSUG00000001099) #10 SEC23IP (ENSNSUG00000001094) #11 ENSNSUG00000001093 PLPP4 (ENSNSUG00000001090) #12 ENSNSUG00000001085 WDR11 (ENSNSUG00000001076) #13 FGFR2 (ENSNSUG00000001069) #14 ATE1 (ENSNSUG00000001059) #15 NSMCE4A (ENSNSUG00000001055) #17 ENSNSUG00000001053 ENSNSUG00000001027 #18 BTBD16 (ENSNSUG00000000997) #19 PLEKHA1 (ENSNSUG00000000993) #20 HTRA1 (ENSNSUG00000000969) #21 ENSNSUG00000000967 ##22 ENSNSUG00000000962 #27 ENSNSUG00000000957 ENSNSUG00000000956 #22 ENSNSUG00000000933 C10orf88 (ENSNSUG00000000899) #29 PSTK (ENSNSUG00000000895) IKZF5 (ENSNSUG00000000891) ACADSB (ENSNSUG00000000887) HMX3 (ENSNSUG00000000884) HMX2 (ENSNSUG00000000883) BUB3 (ENSNSUG00000000878) GPR26 (ENSNSUG00000000874) CPXM2 (ENSNSUG00000000866) CHST15 (ENSNSUG00000000864) OAT (ENSNSUG00000000859) Eastern brown snake MODERN SPECIES 25 RGS10 (ENSPTXG00000011466) ENSPTXG00000011468 BAG3 (ENSPTXG00000011470) #8 INPP5F (ENSPTXG00000011471) #9 MCMBP (ENSPTXG00000011480) #10 SEC23IP (ENSPTXG00000011814) #11 PLPP4 (ENSPTXG00000011887) #12 WDR11 (ENSPTXG00000011888) #13 FGFR2 (ENSPTXG00000011890) #14 ATE1 (ENSPTXG00000011891) #15 NSMCE4A (ENSPTXG00000011892) #17 ENSPTXG00000011893 #18 BTBD16 (ENSPTXG00000011894) #19 PLEKHA1 (ENSPTXG00000011895) #20 HTRA1 (ENSPTXG00000011896) #21 ENSPTXG00000011897 ##22 ENSPTXG00000011898 ENSPTXG00000011899 ##22 ENSPTXG00000011900 ##22 ENSPTXG00000011901 ##22 ENSPTXG00000011902 ENSPTXG00000011903 #29 PSTK (ENSPTXG00000011904) IKZF5 (ENSPTXG00000011905) ACADSB (ENSPTXG00000011906) HMX3 (ENSPTXG00000011907) HMX2 (ENSPTXG00000011908) BUB3 (ENSPTXG00000011909) ENSPTXG00000011910 GPR26 (ENSPTXG00000011911) CPXM2 (ENSPTXG00000011912) Blue-lipped sea krait DUPLICATION Blue-lipped sea krait MODERN SPECIES 5981 HTRA1 (ENSLLTG00000005375) #21 ENSLLTG00000005393 ##22 ENSLLTG00000005419 ##22 ENSLLTG00000005541 #22 Blue-lipped sea krait MODERN SPECIES 5981 ENSLLTG00000005541 #22 ENSLLTG00000005419 ##22 ENSLLTG00000005393 ##22 HTRA1 (ENSLLTG00000005375) #21 Mammalia ANCESTRAL SPECIES 14 ENSGT00940000159204 #8 ENSGT00940000155996 #9 ENSGT00960000190376 ENSGT00390000017265 #10 ENSGT00940000156602 #11 ENSGT00940000158288 #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000165188 ENSGT00940000157052 #18 ENSGT00940000161718 #19 ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00950000183145.A.b.a ##22 ENSGT00950000183145.D ##22 ENSGT00950000183145.E #22 ENSGT00940000163882 ENSGT00940000154525.b.a #27 ENSGT00390000017384 #29 ENSGT00390000017554 ENSGT00940000155035 ENSGT00940000156525 ENSGT00940000158286 ENSGT00940000160392 ENSGT00950000183091.A.a ENSGT00950000183001.a.a ENSGT00940000156414 ENSGT00390000004719 ENSGT00630000089895 Platypus MODERN SPECIES 7 RO60 (ENSOANG00000002961) ENSOANG00000002962 CDC73 (ENSOANG00000002964) B3GALT2 (ENSOANG00000002965) ENSOANG00000011956 KCNT2 (ENSOANG00000049291) ENSOANG00000001407 ENSOANG00000007875 ENSOANG00000049896 ENSOANG00000044965 ENSOANG00000007864 ENSOANG00000031768 #19 PLEKHA1 (ENSOANG00000007865) #20 HTRA1 (ENSOANG00000045001) #21 ENSOANG00000002000 #22 ENSOANG00000049858 ##22 ENSOANG00000045064 #22 ENSOANG00000020984 ##22 ENSOANG00000047128 #25 CUZD1 (ENSOANG00000001997) #27 ENSOANG00000043341 #29 PSTK (ENSOANG00000001995) IKZF5 (ENSOANG00000001994) ACADSB (ENSOANG00000013324) HMX3 (ENSOANG00000037629) HMX2 (ENSOANG00000036447) BUB3 (ENSOANG00000041516) CPXM2 (ENSOANG00000038396) ENSOANG00000030444 #18 ENSOANG00000002087 #17 ATE1 (ENSOANG00000047065) #15 Theria ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Eutheria ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Boreoeutheria ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Laurasiatheria_c ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Equus ANCESTRAL SPECIES ENSGT00950000183145.A.b.a ##22 Horse MODERN SPECIES TIAL1 (ENSECAG00000009970) #7 ENSECAG00000032636 INPP5F (ENSECAG00000014941) #9 MCMBP (ENSECAG00000015061) #10 SEC23IP (ENSECAG00000000536) #11 PLPP4 (ENSECAG00000023526) #12 WDR11 (ENSECAG00000019673) #13 FGFR2 (ENSECAG00000013960) #14 ATE1 (ENSECAG00000012383) #15 NSMCE4A (ENSECAG00000016651) #17 BTBD16 (ENSECAG00000008814) #19 TACC2 (ENSECAG00000018280) #18 PLEKHA1 (ENSECAG00000014908) #20 HTRA1 (ENSECAG00000009990) #21 ENSECAG00000009596 #23 ENSECAG00000060192 ##22 ENSECAG00000006313 #23 ENSECAG00000046082 C1H10orf120 (ENSECAG00000002143) #24 ENSECAG00000009186 #22 ENSECAG00000019510 #25 ENSECAG00000014886 #28 CUZD1 (ENSECAG00000014944) #27 ENSECAG00000013380 #29 ENSECAG00000040992 #28 ENSECAG00000012505 #29 PSTK (ENSECAG00000011238) IKZF5 (ENSECAG00000006987) ENSECAG00000017638 HMX3 (ENSECAG00000037274) HMX2 (ENSECAG00000012690) Anura ANCESTRAL SPECIES 248 ENSGT00940000158288.a #12 ENSGT00390000004068 #13 ENSGT00940000155447 #14 ENSGT00500000044926 #15 ENSGT00390000011476 #17 ENSGT00940000157052 #18 ENSGT00390000010398.A ENSGT00940000155157 #20 ENSGT00940000156955 #21 ENSGT00940000163882.a.b ENSGT00950000183145.A.b.a ##22 Frog DUPLICATION Frog DUPLICATION Frog MODERN SPECIES 8 ENSXETG00000036414 ENSXETG00000046981 ENSXETG00000047180 ENSXETG00000039263 ENSXETG00000046511 ENSXETG00000041545 ENSXETG00000038836 ENSXETG00000048823 ENSXETG00000043884 ENSXETG00000040735 ENSXETG00000047649 ENSXETG00000048559 ENSXETG00000044739 ENSXETG00000042523 ENSXETG00000042145 #25 cd163 (ENSXETG00000007114) ##22 ENSXETG00000033748 ##22 znf329 (ENSXETG00000041068) ENSXETG00000007152 #25 ENSXETG00000039043 #25 ENSXETG00000007129 #25 ENSXETG00000042224 #25 ENSXETG00000039212 #25 ENSXETG00000044507 #25 ENSXETG00000007171 dtx3-like (ENSXETG00000003345) ENSXETG00000029978 ENSXETG00000046292 ENSXETG00000036612 ENSXETG00000044425 ENSXETG00000041174 Frog MODERN SPECIES 8 ENSXETG00000046981 ENSXETG00000047180 ENSXETG00000039263 ENSXETG00000046511 ENSXETG00000041545 ENSXETG00000038836 ENSXETG00000048823 ENSXETG00000043884 ENSXETG00000040735 ENSXETG00000047649 ENSXETG00000048559 ENSXETG00000044739 ENSXETG00000042523 ENSXETG00000042145 #25 cd163 (ENSXETG00000007114) ##22 ENSXETG00000033748 ##22 znf329 (ENSXETG00000041068) ENSXETG00000007152 #25 ENSXETG00000039043 #25 ENSXETG00000007129 #25 ENSXETG00000042224 #25 ENSXETG00000039212 #25 ENSXETG00000044507 #25 ENSXETG00000007171 dtx3-like (ENSXETG00000003345) ENSXETG00000029978 ENSXETG00000046292 ENSXETG00000036612 ENSXETG00000044425 ENSXETG00000041174 ENSXETG00000005986 Frog MODERN SPECIES 7 gpr26 (ENSXETG00000009569) aplp1 (ENSXETG00000009571) chst15 (ENSXETG00000046777) ENSXETG00000049094 oat (ENSXETG00000009576) plpp4 (ENSXETG00000009592) #12 wdr11 (ENSXETG00000015603) #13 fgfr2 (ENSXETG00000015592) #14 ate1 (ENSXETG00000015591) #15 XB5717875 [provisional:plac8] (ENSXETG00000015589) #17 tacc2 (ENSXETG00000015587) #18 ENSXETG00000039419 plekha1 (ENSXETG00000015586) #20 htra1 (ENSXETG00000015580) #21 g6pc1.2 (ENSXETG00000015579) dmbt1 (ENSXETG00000035743) ##22 t2r15 (ENSXETG00000035933) tas2r13 (ENSXETG00000015556) ENSXETG00000034674 gabarapl1 (ENSXETG00000016242) ENSXETG00000016241 styk1 (ENSXETG00000016240) syce3 (ENSXETG00000040102) ybx3 (ENSXETG00000016239) gstk1 (ENSXETG00000016238) t2r41 (ENSXETG00000032405) t2r42 (ENSXETG00000039788) ENSXETG00000027471 ENSXETG00000042547 ENSXETG00000035920 ENSXETG00000045365 Gnathostomata ANCESTRAL SPECIES 731 ENSGT00950000183145.A.b.b ##22 ENSGT01090000260061.c.a.c.a ENSGT01030000235453 ENSGT00940000155882.a.a ENSGT00940000167838 Elephant shark DUPLICATION Elephant shark DUPLICATION Elephant shark DUPLICATION Elephant shark DUPLICATION Elephant shark MODERN SPECIES 260 ENSCMIG00000001711 ##22 Elephant shark MODERN SPECIES 2575 ENSCMIG00000002369 ##22 Elephant shark MODERN SPECIES 2094 ENSCMIG00000010583 ##22 Elephant shark MODERN SPECIES 1705 ENSCMIG00000013813 ENSCMIG00000013811 ENSCMIG00000013809 ENSCMIG00000013808 ENSCMIG00000013807 ENSCMIG00000013805 ENSCMIG00000013803 ENSCMIG00000013801 ENSCMIG00000013800 ENSCMIG00000013796 ENSCMIG00000013793 ENSCMIG00000013791 ENSCMIG00000013782 ENSCMIG00000013776 ENSCMIG00000013773 ##22 ENSCMIG00000013771 ##22 ENSCMIG00000013768 ENSCMIG00000013767 ENSCMIG00000013765 ENSCMIG00000013761 Elephant shark MODERN SPECIES 1532 castor2 (ENSCMIG00000017375) ENSCMIG00000017361 ENSCMIG00000017359 ENSCMIG00000017357 ENSCMIG00000017321 zgc:85789 (ENSCMIG00000017286) ENSCMIG00000017247 MMP28 (ENSCMIG00000017226) ENSCMIG00000017225 ENSCMIG00000017222 RASL10B (ENSCMIG00000017221) ap2b1 (ENSCMIG00000017082) pex12 (ENSCMIG00000017035) ENSCMIG00000017032 ENSCMIG00000017030 ENSCMIG00000017027 ##22 ywhag1 (ENSCMIG00000017025) ENSCMIG00000017016 hspb1 (ENSCMIG00000017013) ENSCMIG00000017011 unc93b1 (ENSCMIG00000016987) med13b (ENSCMIG00000016812) ints2 (ENSCMIG00000016735) brip1 (ENSCMIG00000016693) tbx4 (ENSCMIG00000016661) tbx2b (ENSCMIG00000016655) HGSNAT (ENSCMIG00000016644) SMARCA5 (ENSCMIG00000016087) bcas3 (ENSCMIG00000015769) ppm1db (ENSCMIG00000015721) ENSCMIG00000014193 Euteleostomi ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Actinopterygii ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Neopterygii ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Osteoglossocephalai ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Clupeocephala ANCESTRAL SPECIES 149 ENSGT00940000155869 ENSGT00940000156776.c ENSGT01050000244850.A.a.o.a ENSGT00940000164289.a ENSGT00390000006665.b ENSGT00940000155056.b ENSGT00940000163942.a ENSGT00940000158374.d ENSGT00940000166894 ENSGT00390000009278.a ENSGT00940000154570.a.a ENSGT00940000159410 ENSGT00940000160362 ENSGT00720000108868 ENSGT00940000155472.a.a ENSGT00950000183145.A.b.b ##22 ENSGT00940000166296 ENSGT00940000153394.c.a ENSGT00940000157472 Euteleosteomorpha ANCESTRAL SPECIES 144 ENSGT00940000160485 ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000156776.c ENSGT01050000244850.A.a.o.a ENSGT00940000164289.a ENSGT00720000108868 ENSGT00940000155472.a.a ENSGT00950000183145.A.b.b ##22 ENSGT00990000204792 ENSGT00940000163299.B.b.b ENSGT00940000155987.b ENSGT00940000157963 ENSGT00940000166296 ENSGT00940000153394.c.a Acanthomorphata ANCESTRAL SPECIES 104 ENSGT00950000183145.A.b.b ##22 ENSGT00940000166296 ENSGT00940000153394.c.a ENSGT00390000013764 ENSGT00390000016224 ENSGT00950000182824.a.b.b.d ENSGT00950000183006.A.a.b ENSGT00390000004735.C ENSGT00940000156669.a ENSGT00940000153792.B ENSGT00940000156186.k ENSGT00940000171106 ENSGT00940000161281 ENSGT00940000163886.B.b.a ENSGT00940000163961.a.a.b ENSGT00940000163961.a.a.a Euacanthomorphacea ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Percomorphaceae ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Percomorphaceae_B ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Percomorphaceae_C ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Eupercaria ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Eupecaria_A ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Eupecaria_B ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Eupecaria_C ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Eupercaria_incertae_sedis ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 European seabass MODERN SPECIES 14 ENSDLAG00005032367 ENSDLAG00005018721 pard6b (ENSDLAG00005018650) adnpb (ENSDLAG00005018641) dpm1 (ENSDLAG00005031635) ENSDLAG00005018594 taf13 (ENSDLAG00005018587) tnnc2.2 (ENSDLAG00005018570) ENSDLAG00005018564 ENSDLAG00005018516 ENSDLAG00005017393 lamb2 (ENSDLAG00005015097) ENSDLAG00005012381 ENSDLAG00005030081 ENSDLAG00005032818 ENSDLAG00005012265 ##22 ENSDLAG00005012255 pim1 (ENSDLAG00005012233) ENSDLAG00005012020 ENSDLAG00005028621 ENSDLAG00005011887 fam50a (ENSDLAG00005027522) ENSDLAG00005032227 sars1 (ENSDLAG00005011775) ENSDLAG00005011764 ENSDLAG00005010911 krt18a.2 (ENSDLAG00005010873) krt18a.1 (ENSDLAG00005010859) krt5 (ENSDLAG00005010631) zgc:171775 (ENSDLAG00005010577) ENSDLAG00005009150 Gilthead seabream MODERN SPECIES 21 Cox4b (ENSSAUG00010018002) bcl2l1 (ENSSAUG00010018001) ARFGEF2 (ENSSAUG00010017400) pard6b (ENSSAUG00010017393) adnpb (ENSSAUG00010017391) dpm1 (ENSSAUG00010017390) ENSSAUG00010017386 taf13 (ENSSAUG00010017377) TNNC2 (ENSSAUG00010017373) ENSSAUG00010017372 ENSSAUG00010017123 lamb2 (ENSSAUG00010010651) USP19 (ENSSAUG00010005997) ENSSAUG00010005923 ENSSAUG00010005921 ENSSAUG00010005918 ##22 ENSSAUG00010005905 pim1 (ENSSAUG00010005904) ENSSAUG00010005902 gss (ENSSAUG00010005886) gss (ENSSAUG00010004984) zgc:103759 (ENSSAUG00010004964) ARHGAP4 (ENSSAUG00010004950) cav4b (ENSSAUG00010004940) fam50a (ENSSAUG00010004933) sars1 (ENSSAUG00010004918) ENSSAUG00010004909 tmem106c (ENSSAUG00010004905) ENSSAUG00010004888 krt18a.2 (ENSSAUG00010004863) krt18a.1 (ENSSAUG00010004856) Ovalentaria ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Ovalentaria_B ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Cichlidae ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Midas cichlid MODERN SPECIES 26 ggnbp2 (ENSACIG00000011671) pigw (ENSACIG00000011837) ENSACIG00000011845 znhit3 (ENSACIG00000011858) nupr1a (ENSACIG00000011888) vkorc1l1 (ENSACIG00000011910) GUSB (ENSACIG00000011922) ca4a (ENSACIG00000011946) MTMR4 (ENSACIG00000011997) hpda (ENSACIG00000012075) ENSACIG00000012093 ENSACIG00000012140 supt4h1 (ENSACIG00000012162) ENSACIG00000012193 ENSACIG00000012372 ENSACIG00000012382 ##22 YWHAG (ENSACIG00000012390) hspb1 (ENSACIG00000012404) ENSACIG00000012473 ENSACIG00000012490 c1qbp (ENSACIG00000012577) dhx33 (ENSACIG00000012591) p2rx1 (ENSACIG00000012631) camkk1a (ENSACIG00000012723) ATP2A3 (ENSACIG00000012794) ZZEF1 (ENSACIG00000012837) cyb5d2 (ENSACIG00000012949) ankfy1 (ENSACIG00000012998) ENSACIG00000013047 Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Salmoninae ANCESTRAL SPECIES 213 ENSGT00940000165528 ENSGT00940000158963.b.b.d ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000156776.c ENSGT01050000244850.A.a.o.a.e ENSGT00940000164289.a.d ENSGT00720000108868.e ENSGT00940000155472.a.a.c ENSGT01050000244850.A.a.o.a.f ENSGT00940000164289.a.c ENSGT00720000108868.f ENSGT00940000155472.a.a.d ENSGT00950000183145.A.b.b ##22 ENSGT00940000153394.c.a.f ENSGT00390000013764.hb.b ENSGT00940000160318.d ENSGT00390000018330.e.a ENSGT00940000160331.e.b ENSGT00950000182872.f.a.a.a.a.f ENSGT00940000164502.a.a.d Huchen MODERN SPECIES 2948 ENSHHUG00000045120 ENSHHUG00000045117 ENSHHUG00000045099 ##22 clvs2 (ENSHHUG00000045088) smpdl3a (ENSHHUG00000045082) fabp7b (ENSHHUG00000045039) ENSHHUG00000045036 serinc1 (ENSHHUG00000044954) hsf2 (ENSHHUG00000044922) Salmoninae_a ANCESTRAL SPECIES 26 ENSGT01030000234648.a.b.a.b.a.a ENSGT00940000160485.k ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b.d ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT01050000244850.A.a.o.a.f ENSGT00940000164289.a.c ENSGT00720000108868.f ENSGT00940000155472.a.a.d ENSGT00950000183145.A.b.b ##22 ENSGT00940000153394.c.a.f ENSGT00390000013764.hb.b ENSGT00390000018330.e.a ENSGT00940000160331.e.b ENSGT00950000182872.f.a.a.a.a.f ENSGT00940000164502.a.a.d ENSGT00940000159151.g.b ENSGT00390000007823.r ENSGT00940000161109.m.b ENSGT00940000156478.g.a ENSGT00950000182846.a.a.a.a.a.a.b ENSGT00530000063759.b.a ENSGT00940000157078.i.a.a.b ENSGT01100000263518.B.b.a.a.b ENSGT00940000159657.d.g.a.b Salmo ANCESTRAL SPECIES 4 ENSGT00940000160485.k ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b.d ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000156776.c.f ENSGT01050000244850.A.a.o.a.f ENSGT00940000164289.a.c ENSGT00720000108868.f ENSGT00940000155472.a.a.d ENSGT00950000183145.A.b.b ##22 ENSGT00940000153394.c.a.f ENSGT00390000013764.ib.a ENSGT00950000182872.f.a.a.a.a.f ENSGT00940000164502.a.a.d ENSGT00940000159151.g.b ENSGT00390000007823.r ENSGT00940000161109.m.b ENSGT00940000156478.g.a ENSGT00530000063759.b.a ENSGT00940000157078.i.a.a.b ENSGT01100000263518.B.b.a.a.b ENSGT00940000159657.d.g.a.b ENSGT00940000157212.A.b ENSGT00940000163908 ENSGT00950000183062.a.b.a.f River trout MODERN SPECIES 23 uxt (ENSSTUG00000049561) ENSSTUG00000049564 ENSSTUG00000049565 otud5a (ENSSTUG00000049567) pim2 (ENSSTUG00000049580) slc35a2 (ENSSTUG00000049583) bcap31 (ENSSTUG00000049584) slc6a8 (ENSSTUG00000049592) ENSSTUG00000049669 plxna3 (ENSSTUG00000049704) ENSSTUG00000050050 ENSSTUG00000050053 ptpn18 (ENSSTUG00000050057) gripap1 (ENSSTUG00000050061) kcnd1 (ENSSTUG00000050121) ENSSTUG00000050123 ##22 pim1 (ENSSTUG00000050128) gss (ENSSTUG00000050151) TRPC4AP (ENSSTUG00000050156) sla2b (ENSSTUG00000050180) ENSSTUG00000050186 ndrg3b (ENSSTUG00000026829) ENSSTUG00000026920 ENSSTUG00000026927 sulf2b (ENSSTUG00000026948) ENSSTUG00000027105 mrgbp (ENSSTUG00000027106) ID1 (ENSSTUG00000027120) hm13 (ENSSTUG00000027185) snx21 (ENSSTUG00000028271) itpr3 (ENSSTUG00000028286) Atlantic salmon MODERN SPECIES 4 POB (ENSSSAG00000074008) uxt (ENSSSAG00000073999) ENSSSAG00000073997 ENSSSAG00000073995 otud5a (ENSSSAG00000073981) pim2 (ENSSSAG00000090531) slc35a2 (ENSSSAG00000073975) bcap31 (ENSSSAG00000073971) slc6a8 (ENSSSAG00000073066) ENSSSAG00000099811 plxna3 (ENSSSAG00000117654) ptpn18 (ENSSSAG00000072816) ENSSSAG00000089679 gripap1 (ENSSSAG00000072624) kcnd1 (ENSSSAG00000072605) ENSSSAG00000072601 ##22 pim1 (ENSSSAG00000072583) ENSSSAG00000072575 ENSSSAG00000072569 ENSSSAG00000072499 ndrg3b (ENSSSAG00000072473) ENSSSAG00000072462 ENSSSAG00000072459 sulf2b (ENSSSAG00000070048) ENSSSAG00000083292 ENSSSAG00000084355 mrgbp (ENSSSAG00000120238) ENSSSAG00000069972 ENSSSAG00000120279 ENSSSAG00000069900 ENSSSAG00000088387 Oncorhynchus ANCESTRAL SPECIES 7 ENSGT01030000234648.a.b.a.b.a.a ENSGT00940000160485.k ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b.d ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT01050000244850.A.a.o.a.f ENSGT00940000164289.a.c ENSGT00720000108868.f ENSGT00940000155472.a.a.d ENSGT00950000183145.A.b.b ##22 ENSGT00940000153394.c.a.f ENSGT00390000018330.e.a ENSGT00940000160331.e.b ENSGT00950000182872.f.a.a.a.a.f ENSGT00940000164502.a.a.d ENSGT00940000159151.g.b ENSGT00390000007823.r ENSGT00940000161109.m.b ENSGT00940000156478.g.a ENSGT00950000182846.a.a.a.a.a.a.b ENSGT00530000063759.b.a ENSGT00940000157078.i.a.a.b ENSGT01100000263518.B.b.a.a.b ENSGT00940000159657.d.g.a.b ENSGT00940000157212.A.b Oncorhynchus_a ANCESTRAL SPECIES 9 ENSGT00390000002062 ENSGT01030000234648.a.b.a.b.a.a ENSGT00940000160485.k ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b.d ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT01050000244850.A.a.o.a.f ENSGT00940000164289.a.c ENSGT00720000108868.f ENSGT00940000155472.a.a.d ENSGT00950000183145.A.b.b ##22 ENSGT00940000153394.c.a.f ENSGT00390000018330.e.a ENSGT00940000160331.e.b ENSGT00950000182872.f.a.a.a.a.f ENSGT00940000164502.a.a.d ENSGT00940000159151.g.b ENSGT00390000007823.r ENSGT00940000161109.m.b ENSGT00940000156478.g.a ENSGT00940000156478.h ENSGT00950000182846.a.a.a.a.a.a.b ENSGT00530000063759.b.a ENSGT00940000157078.i.a.a.b ENSGT01100000263518.B.b.a.a.b ENSGT00940000159657.d.g.a.b Chinook salmon MODERN SPECIES 14 abt1 (ENSOTSG00005007913) grm6a (ENSOTSG00005007914) USP11 (ENSOTSG00005007925) zgc:86609 (ENSOTSG00005011090) uxt (ENSOTSG00005011091) ENSOTSG00005011092 ENSOTSG00005011094 otud5a (ENSOTSG00005011095) slc35a2 (ENSOTSG00005011435) bcap31 (ENSOTSG00005011436) slc6a8 (ENSOTSG00005011442) plxna3 (ENSOTSG00005012512) ptpn18 (ENSOTSG00005012519) gripap1 (ENSOTSG00005012537) kcnd1 (ENSOTSG00005013857) ENSOTSG00005013859 ##22 prpf6 (ENSOTSG00005013868) EMILIN3 (ENSOTSG00005014108) b4galt5 (ENSOTSG00005014110) slc9a8 (ENSOTSG00005014181) ENSOTSG00005016151 tlr9 (ENSOTSG00005016152) ENSOTSG00005016155 ENSOTSG00005016859 capza1b (ENSOTSG00005016860) cttnbp2nlb (ENSOTSG00005016861) ENSOTSG00005016862 ENSOTSG00005016864 mrgbp (ENSOTSG00005016867) ENSOTSG00005016870 ID1 (ENSOTSG00005016871) Coho salmon MODERN SPECIES 16 abt1 (ENSOKIG00005018653) grm6a (ENSOKIG00005018665) USP11 (ENSOKIG00005018744) zgc:86609 (ENSOKIG00005018996) uxt (ENSOKIG00005019052) ENSOKIG00005019068 ENSOKIG00005019078 ENSOKIG00005019082 otud5a (ENSOKIG00005019120) slc35a2 (ENSOKIG00005019267) bcap31 (ENSOKIG00005019304) slc6a8 (ENSOKIG00005019356) plxna3 (ENSOKIG00005019794) ptpn18 (ENSOKIG00005022692) gripap1 (ENSOKIG00005022809) ENSOKIG00005023012 ##22 pim1 (ENSOKIG00005023060) TRPC4AP (ENSOKIG00005023143) sla2b (ENSOKIG00005024361) ndrg3b (ENSOKIG00005024382) ENSOKIG00005024539 sulf2b (ENSOKIG00005024715) ENSOKIG00005028046 mrgbp (ENSOKIG00005028064) ID1 (ENSOKIG00005028096) HM13 (ENSOKIG00005028129) dnase1l1 (ENSOKIG00005028367) snx21 (ENSOKIG00005028406) ITPR3 (ENSOKIG00005028438) GPR37L1 (ENSOKIG00005028619) ARL8A (ENSOKIG00005028646) Rainbow trout MODERN SPECIES 7 ENSOMYG00000038448 otud5a (ENSOMYG00000038621) pim2 (ENSOMYG00000070574) slc35a2 (ENSOMYG00000039080) bcap31 (ENSOMYG00000039088) ENSOMYG00000054617 ENSOMYG00000049752 ENSOMYG00000072926 slc6a8 (ENSOMYG00000039300) ENSOMYG00000069042 ENSOMYG00000065897 plxna3 (ENSOMYG00000040043) ptpn18 (ENSOMYG00000040450) gripap1 (ENSOMYG00000040496) kcnd1 (ENSOMYG00000040558) ENSOMYG00000040568 ##22 ENSOMYG00000040580 pim1 (ENSOMYG00000040587) ENSOMYG00000040626 ndrg3b (ENSOMYG00000040817) ENSOMYG00000074130 ENSOMYG00000040882 sulf2b (ENSOMYG00000040949) mrgbp (ENSOMYG00000041780) id1 (ENSOMYG00000041786) ENSOMYG00000059041 ENSOMYG00000041818 ENSOMYG00000041850 ENSOMYG00000041859 ENSOMYG00000069629 ENSOMYG00000041867 Otomorpha ANCESTRAL SPECIES 83 ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b ENSGT00940000161689 ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000156776.c ENSGT01050000244850.A.a.o.a ENSGT00940000164289.a ENSGT00390000006665.b.h ENSGT00720000108868 ENSGT00940000155472.a.a ENSGT00950000183145.A.b.b ##22 ENSGT00940000166296 ENSGT00940000153394.c.a ENSGT00940000157472 ENSGT00940000160682.a ENSGT00940000159584 ENSGT00940000155056.a ENSGT00940000166498 ENSGT00390000003344 ENSGT00940000156361.B ENSGT00390000014494 ENSGT00950000182931.B.a.b ENSGT00950000183011.c.a.a ENSGT00940000158947 ENSGT00390000016950 ENSGT00950000182839.B.a.b Clupeiformes ANCESTRAL SPECIES 80 ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000156776.c ENSGT01050000244850.A.a.o.a ENSGT00940000164289.a ENSGT00390000006665.b.h ENSGT00720000108868 ENSGT00940000155472.a.a ENSGT00950000183145.A.b.b ##22 ENSGT00940000166296 ENSGT00940000153394.c.a ENSGT00940000157472 ENSGT00940000160682.a ENSGT00940000159584 ENSGT00940000155056.a ENSGT00940000166498 ENSGT00390000003344 ENSGT00940000156361.B ENSGT00390000014494 ENSGT00950000182931.B.a.b ENSGT00950000183011.c.a.a ENSGT00940000158947 ENSGT00950000182839.B.a.b ENSGT00390000016950 Denticle herring MODERN SPECIES 1 USP11 (ENSDCDG00000026692) zgc:86609 (ENSDCDG00000030234) uxt (ENSDCDG00000030254) ELK1 (ENSDCDG00000030257) ENSDCDG00000030264 otud5a (ENSDCDG00000030287) pim2 (ENSDCDG00000030420) slc35a2 (ENSDCDG00000030422) bcap31 (ENSDCDG00000030429) slc6a8 (ENSDCDG00000030465) ENSDCDG00000032001 plxna3 (ENSDCDG00000032471) ptpn18 (ENSDCDG00000033724) gripap1 (ENSDCDG00000033747) kcnd1 (ENSDCDG00000033776) ENSDCDG00000033778 ##22 ENSDCDG00000033784 pim1 (ENSDCDG00000033790) TBC1D22B (ENSDCDG00000033801) ENSDCDG00000033813 ENSDCDG00000033816 MAPK13 (ENSDCDG00000033839) BRPF3 (ENSDCDG00000034092) nr1h5 (ENSDCDG00000034128) slc66a1 (ENSDCDG00000034129) trim33 (ENSDCDG00000034137) bcas2 (ENSDCDG00000034162) DENND2C (ENSDCDG00000034183) ampd1 (ENSDCDG00000034239) nras (ENSDCDG00000034521) ENSDCDG00000034522 Otophysi ANCESTRAL SPECIES 127 ENSGT00390000005780.a ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000156776.c ENSGT01050000244850.A.a.o.a ENSGT00940000164289.a ENSGT00390000006665.b.h ENSGT00720000108868 ENSGT00940000155472.a.a ENSGT00950000183145.A.b.b ##22 ENSGT00940000166296 ENSGT00940000153394.c.a ENSGT00940000157472 ENSGT00940000160682.a ENSGT00940000159584 ENSGT00940000155056.a ENSGT00940000166498 ENSGT00390000003344 ENSGT00940000156361.B ENSGT00390000014494 ENSGT00950000182931.B.a.b ENSGT00950000183011.c.a.a ENSGT00940000158947 ENSGT00940000160326.d ENSGT00940000158064 Cyprinoidei ANCESTRAL SPECIES 32 ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b ENSGT00940000163427.c ENSGT00940000175166 ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000156776.c ENSGT01050000244850.A.a.o.a ENSGT00940000164289.a ENSGT00390000006665.b.h ENSGT00720000108868 ENSGT00940000155472.a.a ENSGT00950000183145.A.b.b ##22 ENSGT00940000166296 ENSGT00940000153394.c.a ENSGT00940000157472 ENSGT00940000160682.a ENSGT00940000159584 ENSGT00940000155056.a ENSGT00940000166498 ENSGT00390000003344 ENSGT00940000156361.B ENSGT00390000014494 ENSGT00950000182931.B.a.b ENSGT00950000183011.c.a.a ENSGT00940000158947 ENSGT00940000160326.d ENSGT00940000158064 Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 111 ENSGT01030000234648.a.b.a.b.a.a.b ENSGT00940000160485.v ENSGT00390000005780.a.a ENSGT00390000018078.r ENSGT00940000157571.b ENSGT00940000165528.c ENSGT00940000158963.b.b.a ENSGT00940000163427.c.ab.a ENSGT00950000182827.B.d ENSGT00390000011863.c.p ENSGT00940000155869.d ENSGT01050000244850.A.a.o.a.d ENSGT00940000164289.a.b ENSGT00720000108868.d ENSGT00940000155472.a.a.b ENSGT00950000183145.A.b.b.b ##22 ENSGT00940000166296.b ENSGT00940000153394.c.a.a ENSGT00940000157472.a ENSGT00940000160682.a.a.b ENSGT00940000159584.h ENSGT00940000155056.a.b ENSGT00940000166498.f ENSGT00390000003344.b ENSGT00940000156361.B.a ENSGT00390000014494.ac ENSGT00950000182931.B.a.b.d ENSGT00950000183011.c.a.a.g ENSGT00940000158947.a ENSGT00940000158064.i ENSGT00530000063735.b.c Cyprininae_a ANCESTRAL SPECIES 111 ENSGT00390000002062.p ENSGT01030000234648.a.b.a.b.a.a.b ENSGT00940000160485.v ENSGT00390000005780.a.a ENSGT00390000018078.r ENSGT00940000157571.b ENSGT00940000165528.c ENSGT00940000158963.b.b.a ENSGT00950000182827.B.d ENSGT00390000011863.c.p ENSGT00940000155869.d ENSGT01050000244850.A.a.o.a.d ENSGT00940000164289.a.b ENSGT00720000108868.d ENSGT00940000155472.a.a.b ENSGT00950000183145.A.b.b.b ##22 ENSGT00940000166296.b ENSGT00940000153394.c.a.a ENSGT00940000157472.a ENSGT00940000160682.a.a.b ENSGT00940000159584.h ENSGT00940000155056.a.b ENSGT00940000166498.f ENSGT00940000156361.B.a ENSGT00390000014494.ac ENSGT00950000182931.B.a.b.d ENSGT00950000183011.c.a.a.g ENSGT00940000158947.a ENSGT00940000160326.d ENSGT00940000158064.i ENSGT00530000063735.b.c Common carp reference MODERN SPECIES 17 grm6a (ENSCCRG00000044676) ENSCCRG00000042969 zgc:86609 (ENSCCRG00000075696) uxt (ENSCCRG00000068398) ENSCCRG00000058800 ENSCCRG00000019150 ENSCCRG00000069233 otud5a (ENSCCRG00000077446) slc35a2 (ENSCCRG00000081173) slc6a8 (ENSCCRG00000033069) ENSCCRG00000033025 plxna3 (ENSCCRG00000066638) ptpn18 (ENSCCRG00000005561) gripap1 (ENSCCRG00000005400) kcnd1 (ENSCCRG00000053667) ENSCCRG00000014243 ##22 ENSCCRG00000064380 pim1 (ENSCCRG00000075335) ENSCCRG00000079299 ENSCCRG00000076474 ENSCCRG00000075014 ENSCCRG00000039605 nr1h5 (ENSCCRG00000039614) trim33 (ENSCCRG00000029494) bcas2 (ENSCCRG00000064476) DENND2C (ENSCCRG00000039666) ampd1 (ENSCCRG00000039722) ENSCCRG00000020061 plekha2 (ENSCCRG00000020058) ENSCCRG00000067607 unc45b (ENSCCRG00000023097) Goldfish MODERN SPECIES 1857 USP11 (ENSCARG00000049254) zgc:86609 (ENSCARG00000049008) uxt (ENSCARG00000048972) ENSCARG00000048957 ENSCARG00000048949 otud5a (ENSCARG00000047780) pim2 (ENSCARG00000047698) slc35a2 (ENSCARG00000047678) bcap31 (ENSCARG00000047662) slc6a8 (ENSCARG00000047363) ENSCARG00000047350 plxna3 (ENSCARG00000046997) ptpn18 (ENSCARG00000046896) gripap1 (ENSCARG00000046818) kcnd1 (ENSCARG00000046801) ENSCARG00000046795 ##22 ENSCARG00000046788 pim1 (ENSCARG00000046776) TBC1D22B (ENSCARG00000044309) ENSCARG00000044217 ENSCARG00000044137 BRPF3 (ENSCARG00000043076) nr1h5 (ENSCARG00000042964) slc66a1 (ENSCARG00000042943) trim33 (ENSCARG00000040523) bcas2 (ENSCARG00000040369) DENND2C (ENSCARG00000040328) Cyprininae ANCESTRAL SPECIES ENSGT00950000183145.A.b.b.c ##22 Goldfish MODERN SPECIES 48 uxt (ENSCARG00000009182) ENSCARG00000009172 ENSCARG00000009168 otud5a (ENSCARG00000009129) pim2 (ENSCARG00000009106) ENSCARG00000009101 slc35a2 (ENSCARG00000009092) bcap31 (ENSCARG00000009086) slc6a8 (ENSCARG00000007521) ENSCARG00000007441 plxna3 (ENSCARG00000006861) ptpn18 (ENSCARG00000006767) MON1B (ENSCARG00000006753) gripap1 (ENSCARG00000006684) kcnd1 (ENSCARG00000006660) ENSCARG00000006650 ##22 ENSCARG00000006645 ENSCARG00000006622 pim1 (ENSCARG00000006574) TBC1D22B (ENSCARG00000006284) ENSCARG00000006235 MAPK13 (ENSCARG00000006095) BRPF3 (ENSCARG00000006032) nr1h5 (ENSCARG00000014410) slc66a1 (ENSCARG00000014370) trim33 (ENSCARG00000012635) bcas2 (ENSCARG00000012570) DENND2C (ENSCARG00000012559) ampd1 (ENSCARG00000010146) nras (ENSCARG00000010067) ASB13 (ENSCARG00000010058) Cyprininae_a ANCESTRAL SPECIES ENSGT00950000183145.A.b.b.c ##22 Common carp reference MODERN SPECIES 23 gatd3l (ENSCCRG00000039895) ENSCCRG00000039911 tmem230b (ENSCCRG00000028227) adra1aa (ENSCCRG00000033198) DPYSL2 (ENSCCRG00000032822) bnip3la (ENSCCRG00000063515) ENSCCRG00000082326 ENSCCRG00000075390 ENSCCRG00000054909 ENSCCRG00000072392 vsig8b (ENSCCRG00000005778) ENSCCRG00000076514 dock5 (ENSCCRG00000054066) nefmb (ENSCCRG00000053011) ENSCCRG00000010578 ENSCCRG00000013119 ##22 asb6 (ENSCCRG00000013111) wdr13 (ENSCCRG00000079096) si:ch211-255g12.6 (ENSCCRG00000065491) asic1a (ENSCCRG00000009441) gpd1a (ENSCCRG00000010584) ENSCCRG00000010795 ENSCCRG00000010828 slc6a6a (ENSCCRG00000046825) grip2a (ENSCCRG00000011004) ssuh2rs1 (ENSCCRG00000043512) ENSCCRG00000045171 ENSCCRG00000020727 ENSCCRG00000079400 ENSCCRG00000029562 ENSCCRG00000067660 Zebrafish MODERN SPECIES 23 uxt (ENSDARG00000019339) ELK1 (ENSDARG00000078066) ENSDARG00000077112 otud5a (ENSDARG00000059006) pim2 (ENSDARG00000059001) ENSDARG00000093019 slc35a2 (ENSDARG00000058990) bcap31 (ENSDARG00000044972) slc6a8 (ENSDARG00000043646) ENSDARG00000043648 plxna3 (ENSDARG00000007172) ptpn18 (ENSDARG00000006308) MON1B (ENSDARG00000035686) gripap1 (ENSDARG00000063069) kcnd1 (ENSDARG00000074746) ENSDARG00000069542 ##22 ENSDARG00000058944 pim1 (ENSDARG00000100020) TBC1D22B (ENSDARG00000026988) ENSDARG00000068100 ENSDARG00000058470 BRPF3 (ENSDARG00000074238) nr1h5 (ENSDARG00000031046) ENSDARG00000117077 slc66a1 (ENSDARG00000043624) trim33 (ENSDARG00000016181) bcas2 (ENSDARG00000043631) DENND2C (ENSDARG00000073738) ampd1 (ENSDARG00000033832) nras (ENSDARG00000038225) ASB13 (ENSDARG00000089833) Characiphysae ANCESTRAL SPECIES 41 ENSGT00390000018078 ENSGT00940000157571 ENSGT00940000165528 ENSGT00940000158963.b.b ENSGT00940000161689 ENSGT00940000163427.c ENSGT00950000182827.B ENSGT00390000011863.c ENSGT00940000155869 ENSGT00940000156776.c ENSGT01050000244850.A.a.o.a ENSGT00940000164289.a ENSGT00390000006665.b.h ENSGT00720000108868 ENSGT00940000155472.a.a ENSGT00950000183145.A.b.b ##22 ENSGT00940000166296 ENSGT00940000153394.c.a ENSGT00940000157472 ENSGT00940000160682.a ENSGT00940000159584 ENSGT00940000155056.a ENSGT00940000166498 ENSGT00390000003344 ENSGT00940000156361.B ENSGT00390000014494 ENSGT00950000182931.B.a.b ENSGT00950000183011.c.a.a ENSGT00940000158947 ENSGT00940000160326.d ENSGT00940000158064 Characiphysae_b ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Characoidei ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Mexicana tetra MODERN SPECIES rhoub (ENSAMXG00000033298) rtn2a (ENSAMXG00000041754) ENSAMXG00000035573 trappc4 (ENSAMXG00000044039) ENSAMXG00000035916 sgcg (ENSAMXG00000031286) SACS (ENSAMXG00000015179) tnfrsf19 (ENSAMXG00000032587) MIPEP (ENSAMXG00000015122) ENSAMXG00000015091 bach1a (ENSAMXG00000015064) cadm2b (ENSAMXG00000015024) GBE1 (ENSAMXG00000009839) SLC7A1 (ENSAMXG00000009846) ENSAMXG00000029212 ENSAMXG00000039229 ##22 ENSAMXG00000035891 si:dkey-24p1.1 (ENSAMXG00000006763) irgq2 (ENSAMXG00000025750) ENSAMXG00000029467 mag (ENSAMXG00000006743) lsr (ENSAMXG00000006724) tmem106ba (ENSAMXG00000042486) seraf (ENSAMXG00000039386) ENSAMXG00000006657 ENSAMXG00000029306 ENSAMXG00000027371 arl4aa (ENSAMXG00000006638) etv1 (ENSAMXG00000039261) agmo (ENSAMXG00000034189) MEOX2 (ENSAMXG00000029485) Channel catfish MODERN SPECIES 24 usp11 (ENSIPUG00000011912) zgc:86609 (ENSIPUG00000011878) Uxt (ENSIPUG00000011857) elk1 (ENSIPUG00000011841) LRRN1 (ENSIPUG00000011826) otud5 (ENSIPUG00000011788) pim2 (ENSIPUG00000011752) slc35a2 (ENSIPUG00000011733) bcap31 (ENSIPUG00000011713) Slc6a8 (ENSIPUG00000011661) ENSIPUG00000011620 plxna3 (ENSIPUG00000011528) Ptpn18 (ENSIPUG00000011444) Gripap1 (ENSIPUG00000011217) kcnd1 (ENSIPUG00000011155) ENSIPUG00000011105 ##22 ENSIPUG00000011089 PIM3 (ENSIPUG00000011062) tbc1d22b (ENSIPUG00000011021) ENSIPUG00000011014 ENSIPUG00000010985 BRPF3 (ENSIPUG00000010904) Nr1h4 (ENSIPUG00000010855) slc66a1 (ENSIPUG00000010811) trim33 (ENSIPUG00000010731) bcas2 (ENSIPUG00000010649) dennd2c (ENSIPUG00000010599) ampd1 (ENSIPUG00000010509) nras (ENSIPUG00000010414) ASB13 (ENSIPUG00000010393) plekha2 (ENSIPUG00000010372) Osteoglossiformes ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Asian bonytongue MODERN SPECIES 20 ENSSFOG00015027594 ENSSFOG00015005081 rpap3 (ENSSFOG00015030819) atp23 (ENSSFOG00015031983) lrig3 (ENSSFOG00015010503) ENSSFOG00015010647 ETV6 (ENSSFOG00015010592) ENSSFOG00015028488 zgc:165507 (ENSSFOG00015010553) lrig3 (ENSSFOG00015032543) atp23 (ENSSFOG00015032674) rpap3 (ENSSFOG00015010461) ENSSFOG00015010361 ENSSFOG00015024367 ENSSFOG00015024743 ENSSFOG00015031103 ##22 ENSSFOG00015024828 ENSSFOG00015033316 ENSSFOG00015030407 ENSSFOG00015031872 ##22 ENSSFOG00015032189 ENSSFOG00015028918 ENSSFOG00015027762 si:dkey-14d8.7 (ENSSFOG00015013829) mapk12b (ENSSFOG00015013781) ENSSFOG00015025380 mapk11 (ENSSFOG00015013508) ENSSFOG00015013443 ENSSFOG00015013400 ENSSFOG00015013380 selenoo1 (ENSSFOG00015013364) Sarcopterygii ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Coelacanth DUPLICATION Coelacanth DUPLICATION Coelacanth DUPLICATION Coelacanth MODERN SPECIES 3775 ENSLACG00000000419 ##22 Coelacanth MODERN SPECIES 4175 ENSLACG00000000222 ##22 Coelacanth MODERN SPECIES 1410 ENSLACG00000011668 ENSLACG00000011088 LYST (ENSLACG00000003979) ENSLACG00000002089 ##22 Coelacanth DUPLICATION Coelacanth MODERN SPECIES 1431 ENSLACG00000002041 ENSLACG00000003593 CA11 (ENSLACG00000004463) ENSLACG00000006062 ENSLACG00000007598 SPHK2 (ENSLACG00000008598) ENSLACG00000009585 ENSLACG00000010050 ENSLACG00000010966 ENSLACG00000011978 ##22 Coelacanth MODERN SPECIES 3849 ENSLACG00000000965 ##22 Tetrapoda ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Amniota ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Sauria ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Lepidosauria ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Episquamata ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Laterata ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Common wall lizard MODERN SPECIES 13 WDR11 (ENSPMRG00000006420) #13 FGFR2 (ENSPMRG00000006399) #14 ATE1 (ENSPMRG00000006382) #15 ENSPMRG00000006364 #17 TACC2 (ENSPMRG00000006314) #18 BTBD16 (ENSPMRG00000006301) #19 PLEKHA1 (ENSPMRG00000006289) #20 HTRA1 (ENSPMRG00000006287) #21 ENSPMRG00000006279 ENSPMRG00000006276 ENSPMRG00000006275 ENSPMRG00000006269 ENSPMRG00000006230 #22 ENSPMRG00000006207 #22 ENSPMRG00000006189 #22 ENSPMRG00000006176 ##22 CUZD1 (ENSPMRG00000006167) #27 C10orf88 (ENSPMRG00000006156) #29 ENSPMRG00000006144 PSTK (ENSPMRG00000006125) IKZF5 (ENSPMRG00000006110) ACADSB (ENSPMRG00000006103) ENSPMRG00000006097 HMX3 (ENSPMRG00000006089) HMX2 (ENSPMRG00000006086) BUB3 (ENSPMRG00000006076) GPR26 (ENSPMRG00000006065) CPXM2 (ENSPMRG00000006029) CHST15 (ENSPMRG00000006004) OAT (ENSPMRG00000005967) ENSPMRG00000005952 Archelosauria ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Cryptodira ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Chinese turtle MODERN SPECIES 1843 ATF5 (ENSPSIG00000014590) LIG1 (ENSPSIG00000011945) ZSWIM9 (ENSPSIG00000011630) ENSPSIG00000011606 ENSPSIG00000011373 ZNF628 (ENSPSIG00000011097) ENSPSIG00000011033 ENSPSIG00000010219 ##22 Archosauria ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Aves ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Neognathae ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Galloanserae ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Phasianidae ANCESTRAL SPECIES ENSGT00950000183145.A.b.b ##22 Japanese quail MODERN SPECIES 23 ENSCJPG00005013234 ENSCJPG00005013238 ENSCJPG00005013244 UNC93B1 (ENSCJPG00005013270) MAX (ENSCJPG00005013271) FNTB (ENSCJPG00005013272) ENSCJPG00005013308 RAB15 (ENSCJPG00005013309) GPX2 (ENSCJPG00005013310) NUP160 (ENSCJPG00005013463) ENSCJPG00005013471 NDUFV1 (ENSCJPG00005013473) CABP2 (ENSCJPG00005013508) CDK2AP2 (ENSCJPG00005013509) AIP (ENSCJPG00005013517) ENSCJPG00005013518 ##22 ENSCJPG00005013519 ENSCJPG00005013520 ENSCJPG00005013521 TALDO1 (ENSCJPG00005013524) EPS8L2 (ENSCJPG00005013525) TMEM80 (ENSCJPG00005013526) DEAF1 (ENSCJPG00005013527) DRD4 (ENSCJPG00005013528) ENSCJPG00005013529 BUB1B (ENSCJPG00005013530) PAK6 (ENSCJPG00005013531) PLCB2 (ENSCJPG00005013534) INAFM2 (ENSCJPG00005013535) ENSCJPG00005013536 DISP2 (ENSCJPG00005013538) Australian saltwater crocodile MODERN SPECIES 68 BAG3 (ENSCPRG00005010481) #8 INPP5F (ENSCPRG00005010451) #9 MCMBP (ENSCPRG00005010437) #10 SEC23IP (ENSCPRG00005010423) #11 ENSCPRG00005010403 PLPP4 (ENSCPRG00005010400) #12 WDR11 (ENSCPRG00005010238) #13 FGFR2 (ENSCPRG00005010191) #14 ATE1 (ENSCPRG00005010141) #15 NSMCE4A (ENSCPRG00005010129) #17 TACC2 (ENSCPRG00005010117) #18 ENSCPRG00005010107 BTBD16 (ENSCPRG00005010103) #19 PLEKHA1 (ENSCPRG00005010094) #20 HTRA1 (ENSCPRG00005010065) #21 ENSCPRG00005010058 ##22 ENSCPRG00005010028 ENSCPRG00005010020 ENSCPRG00005010017 ##22 ENSCPRG00005010015 ##22 ENSCPRG00005010013 ##22 ENSCPRG00005009997 CUZD1 (ENSCPRG00005009971) #27 C10orf88 (ENSCPRG00005009963) #29 ENSCPRG00005009952 PSTK (ENSCPRG00005009943) IKZF5 (ENSCPRG00005009941) ENSCPRG00005009939 ACADSB (ENSCPRG00005009928) HMX3 (ENSCPRG00005009925) HMX2 (ENSCPRG00005009921)