Euarchontoglires	ANCESTRAL SPECIES	25			ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.b	ENSGT01100000263486.a.b.a.b.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.a
Primates	ANCESTRAL SPECIES	30			ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A
Haplorrhini	ANCESTRAL SPECIES	46		ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT00940000162666	ENSGT01090000260086.E.b
Simiiformes	ANCESTRAL SPECIES	33		ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00910000148176	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.a.b
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000017697.a.n #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121 #24	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00910000148176	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058	ENSGT00390000003188
Cercopithecidae	ANCESTRAL SPECIES	20		ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000017697.a.n #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121 #24	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058
Cercopithecinae	ANCESTRAL SPECIES	18		ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000017697.a.n #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121 #24	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT01090000260030.b	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058	ENSGT00390000003188
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000013340	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A.vc #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000017697.a.n #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00860000136121 #24	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00910000148086	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT01090000260030.b	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058
Macaca	ANCESTRAL SPECIES		ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00440000034918.q.a.a.a.d.l.a.b #14	ENSGT00940000154756.A.vc #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000017697.a.n #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00860000136121 #24	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00910000148086	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT01090000260030.b	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058
Pig-tailed macaque	MODERN SPECIES	288	RNF187 (ENSMNEG00000041115) #7	ENSMNEG00000023271 #8	H2BC26 (ENSMNEG00000007106) #9	H2AC25 (ENSMNEG00000011405) #10	H3-4 (ENSMNEG00000018662) #11	TRIM17 (ENSMNEG00000033783) #12	TRIM11 (ENSMNEG00000029145) #13	ENSMNEG00000022017 #14	OBSCN (ENSMNEG00000039875) #15	ENSMNEG00000033684 #16	IBA57 (ENSMNEG00000037320) #17	GJC2 (ENSMNEG00000000224) #18	ENSMNEG00000028444 #19	ENSMNEG00000035833 #20	MRPL55 (ENSMNEG00000036387) #21	C1orf35 (ENSMNEG00000029724) #22	ARF1 (ENSMNEG00000037278) #23	ENSMNEG00000038219 #24	WNT3A (ENSMNEG00000037152) #25	WNT9A (ENSMNEG00000028905) #26
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000163577	ENSGT00940000157769	ENSGT00940000153464.A.b.a	ENSGT00940000154842.a.b	ENSGT00390000013340	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT01100000263514.A.f ##11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00440000034918.q.a.a.a.d.l.a.b #14	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT01090000260030.b	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058	ENSGT00940000161627.a.b.a.a.b	ENSGT00390000003188
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000053016	UHMK1 (ENSMFAG00000041742)	UAP1 (ENSMFAG00000042529)	DDR2 (ENSMFAG00000036365)	ENSMFAG00000062302	RNF187 (ENSMFAG00000035159) #7	H2BC26 (ENSMFAG00000049429) #9	ENSMFAG00000057302	ENSMFAG00000063754 ##11	TRIM17 (ENSMFAG00000001716) #12	TRIM11 (ENSMFAG00000042805) #13	ENSMFAG00000008386 #14	IBA57 (ENSMFAG00000002470) #17	GUK1 (ENSMFAG00000039838) #19	MRPL55 (ENSMFAG00000064574) #21	C1orf35 (ENSMFAG00000045378) #22	ENSMFAG00000034073 #23	WNT3A (ENSMFAG00000042689) #25	WNT9A (ENSMFAG00000062558) #26	PRSS38 (ENSMFAG00000045626)	SNAP47 (ENSMFAG00000001190)	JMJD4 (ENSMFAG00000043012)	ENSMFAG00000038489	CDC42BPA (ENSMFAG00000036131)	COQ8A (ENSMFAG00000045043)	PSEN2 (ENSMFAG00000000107)	ENSMFAG00000054654	ENSMFAG00000053714	ITPKB (ENSMFAG00000035876)	STUM (ENSMFAG00000035398)	PARP1 (ENSMFAG00000002526)
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00390000013340	ENSGT00390000009510.a #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A.vc #15	ENSGT00390000016274 #16	ENSGT00440000034918.q.a.a.a.d.l.a.b #14	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00860000136121 #24	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00910000148086	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003
Olive baboon	MODERN SPECIES		DDR2 (ENSPANG00000011453)	ENSPANG00000045838	HSD17B7 (ENSPANG00000026079)	ENSPANG00000050063 #8	H2BC26 (ENSPANG00000042066) #9	H2AC25 (ENSPANG00000039633) #10	H3-4 (ENSPANG00000032788) #11	TRIM17 (ENSPANG00000014849) #12	TRIM11 (ENSPANG00000004478) #13	ENSPANG00000035184 #15	ENSPANG00000030630 #14	IBA57 (ENSPANG00000021033) #17	GJC2 (ENSPANG00000035104) #18	ENSPANG00000020945 #19	MRPL55 (ENSPANG00000017717) #21	C1orf35 (ENSPANG00000009889) #22	ENSPANG00000004523 #23	WNT3A (ENSPANG00000019711) #25	WNT9A (ENSPANG00000048565) #26	PRSS38 (ENSPANG00000024006)	SNAP47 (ENSPANG00000017951)	JMJD4 (ENSPANG00000031507)	ENSPANG00000048924	ENSPANG00000048983	CDC42BPA (ENSPANG00000007777)	COQ8A (ENSPANG00000005934)	PSEN2 (ENSPANG00000015683)	ENSPANG00000040643	ITPKB (ENSPANG00000014076)	ENSPANG00000042335	ENSPANG00000041992
Cercopithecinae_d	ANCESTRAL SPECIES	160		ENSGT00390000009510.a #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A.vc #15	ENSGT00390000016274 #16	ENSGT00440000034918.q.a.a.a.d.l.a.b #14	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00860000136121 #24	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00910000148086	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT01090000260030.b	ENSGT00910000147389	ENSGT00940000154251.A.a.a.a
Sooty mangabey	MODERN SPECIES	269	ENSCATG00000036222 #7	ENSCATG00000016310 #8	H2BC26 (ENSCATG00000043414) #9	H2AC25 (ENSCATG00000019930) #10	H3-4 (ENSCATG00000015110) #11	TRIM17 (ENSCATG00000004723) #12	TRIM11 (ENSCATG00000037992) #13	ENSCATG00000028342 ##15	ENSCATG00000018563 #14	ENSCATG00000015518 #15	ENSCATG00000033121 #16	IBA57 (ENSCATG00000033547) #17	GJC2 (ENSCATG00000043427) #18	ENSCATG00000030372 #19	MRPL55 (ENSCATG00000001114) #21	C1orf35 (ENSCATG00000036828) #22	ENSCATG00000034162 #23	ENSCATG00000026444 #24	WNT3A (ENSCATG00000024249) #25	WNT9A (ENSCATG00000037437) #26	PRSS38 (ENSCATG00000028007)	ENSCATG00000032383	SNAP47 (ENSCATG00000017110)	JMJD4 (ENSCATG00000030697)	ENSCATG00000028870	ENSCATG00000036887
Drill	MODERN SPECIES	1468					ENSMLEG00000027649 #8	H2BC26 (ENSMLEG00000011931) #9	H2AC25 (ENSMLEG00000019082) #10	H3-4 (ENSMLEG00000027834) #11	TRIM17 (ENSMLEG00000036683) #12	TRIM11 (ENSMLEG00000035665) #13	OBSCN (ENSMLEG00000039921) #15	ENSMLEG00000000202 #14	IBA57 (ENSMLEG00000035651) #17	ENSMLEG00000033820 #19	MRPL55 (ENSMLEG00000043407) #21	C1orf35 (ENSMLEG00000044367) #22	ARF1 (ENSMLEG00000040308) #23	ENSMLEG00000010724 #24	WNT3A (ENSMLEG00000034108) #25	WNT9A (ENSMLEG00000041830) #26	PRSS38 (ENSMLEG00000031236)	SNAP47 (ENSMLEG00000028118)	JMJD4 (ENSMLEG00000038450)	ENSMLEG00000029152	ZNF678 (ENSMLEG00000030111)
Vervet Monkey	MODERN SPECIES	17				RNF187 (ENSCSAG00000016553) #7	ENSCSAG00000000273 #8	H2BC26 (ENSCSAG00000000272) #9	H2AC25 (ENSCSAG00000000271) #10	TRIM17 (ENSCSAG00000016546) #12	TRIM11 (ENSCSAG00000016542) #13	OBSCN (ENSCSAG00000016528) #15	ENSCSAG00000000270 #16	IBA57 (ENSCSAG00000016503) #17	GJC2 (ENSCSAG00000000269) #18	GUK1 (ENSCSAG00000016494) #19	MRPL55 (ENSCSAG00000016477) #21	C1orf35 (ENSCSAG00000016465) #22	ARF1 (ENSCSAG00000016460) #23	WNT3A (ENSCSAG00000016455) #25	WNT9A (ENSCSAG00000016440) #26	PRSS38 (ENSCSAG00000016434)	SNAP47 (ENSCSAG00000016423)	JMJD4 (ENSCSAG00000016420)	ENSCSAG00000016411	CDC42BPA (ENSCSAG00000016402)	COQ8A (ENSCSAG00000016382)	PSEN2 (ENSCSAG00000016372)	ITPKB (ENSCSAG00000016366)	STUM (ENSCSAG00000016358)	PARP1 (ENSCSAG00000016354)	LIN9 (ENSCSAG00000016351)	MIXL1 (ENSCSAG00000016345)
Rhinopithecus	ANCESTRAL SPECIES	247			ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121 #24	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00910000147389	ENSGT00390000012563.m.b.b
Golden snub-nosed monkey	MODERN SPECIES	1884												IBA57 (ENSRROG00000033786) #17	GJC2 (ENSRROG00000044410) #18	ENSRROG00000031989 #19	MRPL55 (ENSRROG00000033833) #21	C1orf35 (ENSRROG00000039110) #22	ARF1 (ENSRROG00000040407) #23	ENSRROG00000034216 #24	WNT3A (ENSRROG00000037718) #25	WNT9A (ENSRROG00000031230) #26	PRSS38 (ENSRROG00000032353)	SNAP47 (ENSRROG00000004862)	JMJD4 (ENSRROG00000039305)	ENSRROG00000036976	ENSRROG00000013119
Black snub-nosed monkey	MODERN SPECIES	736				ENSRBIG00000029298 #8	H2BC26 (ENSRBIG00000013451) #9	H2AC25 (ENSRBIG00000024183) #10	H3-4 (ENSRBIG00000029468) #11	TRIM17 (ENSRBIG00000017974) #12	TRIM11 (ENSRBIG00000027735) #13	OBSCN (ENSRBIG00000044496) #15	ENSRBIG00000031054 #16	IBA57 (ENSRBIG00000042111) #17	GJC2 (ENSRBIG00000039202) #18	ENSRBIG00000030901 #19	MRPL55 (ENSRBIG00000038180) #21	C1orf35 (ENSRBIG00000032408) #22	ARF1 (ENSRBIG00000043809) #23	ENSRBIG00000040413 #24	WNT3A (ENSRBIG00000039877) #25	WNT9A (ENSRBIG00000036258) #26
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000017697.a.n #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121 #24	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00910000147389	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000157177.i.b
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000017697.a.n #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121 #24	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000157177.i.b	ENSGT00940000156058
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000156644	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000017697.a.n #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121 #24	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00910000147389	ENSGT00940000159380	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000157177.i.b
Gorilla	MODERN SPECIES		ENSGGOG00000011409	ENSGGOG00000026023 #7	ENSGGOG00000037971 #8	H2BC26 (ENSGGOG00000039267) #9	H2AC25 (ENSGGOG00000037094) #10	ENSGGOG00000027960 #11	TRIM17 (ENSGGOG00000016899) #12	TRIM11 (ENSGGOG00000016890) #13	ENSGGOG00000012717 #15	ENSGGOG00000012820 #16	IBA57 (ENSGGOG00000013646) #17	ENSGGOG00000027354 #18	ENSGGOG00000013567 #19	ENSGGOG00000039931 #20	ENSGGOG00000015709 #21	C1orf35 (ENSGGOG00000015702) #22	ARF1 (ENSGGOG00000011263) #23	ENSGGOG00000023449 #24	WNT3A (ENSGGOG00000006562) #25	ENSGGOG00000037788	WNT9A (ENSGGOG00000004569) #26	PRSS38 (ENSGGOG00000012849)	SNAP47 (ENSGGOG00000008442)	ENSGGOG00000037683	JMJD4 (ENSGGOG00000008441)	ENSGGOG00000041432	ZNF678 (ENSGGOG00000042328)	CDC42BPA (ENSGGOG00000009605)	COQ8A (ENSGGOG00000009596)	PSEN2 (ENSGGOG00000003332)	ENSGGOG00000015112
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000156644	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000017697.a.n #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121 #24	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00910000147389	ENSGT00940000159380	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000157177.i.b
Human	MODERN SPECIES		ACTA1 (ENSG00000143632)	CCSAP (ENSG00000154429)	RAB4A (ENSG00000168118)	RHOU (ENSG00000116574)	RNF187 (ENSG00000168159) #7	H2BC26 (ENSG00000196890) #9	H2AC25 (ENSG00000181218) #10	H3-4 (ENSG00000168148) #11	TRIM17 (ENSG00000162931) #12	TRIM11 (ENSG00000154370) #13	OBSCN (ENSG00000154358) #15	IBA57 (ENSG00000181873) #17	GJC2 (ENSG00000198835) #18	GUK1 (ENSG00000143774) #19	MRPL55 (ENSG00000162910) #21	C1orf35 (ENSG00000143793) #22	ARF1 (ENSG00000143761) #23	WNT3A (ENSG00000154342) #25	WNT9A (ENSG00000143816) #26	PRSS38 (ENSG00000185888)	JMJD4 (ENSG00000081692)	SNAP47 (ENSG00000143740)	ZNF678 (ENSG00000181450)	CDC42BPA (ENSG00000143776)	COQ8A (ENSG00000163050)	PSEN2 (ENSG00000143801)	ITPKB (ENSG00000143772)	STUM (ENSG00000203685)	PARP1 (ENSG00000143799)	LIN9 (ENSG00000183814)	MIXL1 (ENSG00000185155)
Pan	ANCESTRAL SPECIES		ENSGT00940000156644	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000017697.a.n #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121 #24	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00910000147389	ENSGT00940000159380	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000157177.i.b
Chimpanzee	MODERN SPECIES		RNF187 (ENSPTRG00000002079) #7	H2BC27 (ENSPTRG00000049906) #8	ENSPTRG00000048372	H2BC26 (ENSPTRG00000050958) #9	H2AC25 (ENSPTRG00000047640) #10	H3-4 (ENSPTRG00000052362) #11	TRIM17 (ENSPTRG00000002076) #12	TRIM11 (ENSPTRG00000002071) #13	OBSCN (ENSPTRG00000046375) #15	ENSPTRG00000002073 #16	IBA57 (ENSPTRG00000002072) #17	GJC2 (ENSPTRG00000002070) #18	GUK1 (ENSPTRG00000002069) #19	ENSPTRG00000051540 #20	MRPL55 (ENSPTRG00000002068) #21	C1H1orf35 (ENSPTRG00000002067) #22	ARF1 (ENSPTRG00000002066) #23	ENSPTRG00000046943 #24	WNT3A (ENSPTRG00000002064) #25	WNT9A (ENSPTRG00000002062) #26	PRSS38 (ENSPTRG00000002061)	SNAP47 (ENSPTRG00000002060)	ENSPTRG00000048948	JMJD4 (ENSPTRG00000002059)	ZNF678 (ENSPTRG00000002057)	CDC42BPA (ENSPTRG00000042934)	COQ8A (ENSPTRG00000033741)	PSEN2 (ENSPTRG00000002052)	ITPKB (ENSPTRG00000002051)	STUM (ENSPTRG00000030135)	ENSPTRG00000043266
Bonobo	MODERN SPECIES		ACTA1 (ENSPPAG00000033916)	RAB4A (ENSPPAG00000036595)	ENSPPAG00000034335	ENSPPAG00000001893 #8	H2BC26 (ENSPPAG00000025721) #9	H2AC25 (ENSPPAG00000013459) #10	H3-4 (ENSPPAG00000020018) #11	TRIM17 (ENSPPAG00000018691) #12	TRIM11 (ENSPPAG00000018913) #13	OBSCN (ENSPPAG00000039604) #15	ENSPPAG00000037707 #16	ENSPPAG00000034125 #17	ENSPPAG00000031110 #19	ENSPPAG00000030143 #20	ENSPPAG00000030545 #21	ENSPPAG00000031412 #22	ARF1 (ENSPPAG00000029612) #23	ENSPPAG00000003062 #24	WNT3A (ENSPPAG00000033514) #25	WNT9A (ENSPPAG00000040433) #26	PRSS38 (ENSPPAG00000029608)	SNAP47 (ENSPPAG00000030087)	ENSPPAG00000043934	JMJD4 (ENSPPAG00000041921)	ENSPPAG00000042694	ENSPPAG00000042857	CDC42BPA (ENSPPAG00000030700)	COQ8A (ENSPPAG00000038783)	PSEN2 (ENSPPAG00000029453)	ITPKB (ENSPPAG00000034181)	ENSPPAG00000026314
Orangutan	MODERN SPECIES		RHOU (ENSPPYG00000000130)	ENSPPYG00000000131	ENSPPYG00000000133	RNF187 (ENSPPYG00000041257) #7	ENSPPYG00000040985 #8	H2BC26 (ENSPPYG00000039326) #9	H2AC25 (ENSPPYG00000030037) #10	H3-4 (ENSPPYG00000000136) #11	TRIM17 (ENSPPYG00000000137) #12	ENSPPYG00000000138 #13	ENSPPYG00000000139 #15	IBA57 (ENSPPYG00000039751) #17	GJC2 (ENSPPYG00000000144) #18	ENSPPYG00000000145 #19	ENSPPYG00000000146 #21	C1orf35 (ENSPPYG00000000147) #22	ARF1 (ENSPPYG00000000148) #23	ENSPPYG00000000149 #24	WNT3A (ENSPPYG00000000150) #25	WNT9A (ENSPPYG00000000151) #26	PRSS38 (ENSPPYG00000000152)	SNAP47 (ENSPPYG00000000153)	JMJD4 (ENSPPYG00000000154)	ENSPPYG00000000155	CDC42BPA (ENSPPYG00000000158)	COQ8A (ENSPPYG00000000159)	PSEN2 (ENSPPYG00000000160)	ITPKB (ENSPPYG00000000161)	STUM (ENSPPYG00000000162)	PARP1 (ENSPPYG00000000164)	ENSPPYG00000000165
Gibbon	MODERN SPECIES	20	ENSNLEG00000032941	RAB4A (ENSNLEG00000014339)	ENSNLEG00000027599	RHOU (ENSNLEG00000027920)	ENSNLEG00000029943 #8	H2BC26 (ENSNLEG00000033656) #9	H2AC25 (ENSNLEG00000033352) #10	H3-4 (ENSNLEG00000031785) #11	TRIM17 (ENSNLEG00000014332) #12	TRIM11 (ENSNLEG00000014315) #13	ENSNLEG00000014265 #15	ENSNLEG00000033321 #16	IBA57 (ENSNLEG00000014263) #17	ENSNLEG00000014235 #19	ENSNLEG00000014215 #21	ENSNLEG00000033210 #22	ARF1 (ENSNLEG00000014137) #23	ENSNLEG00000029254 #24	WNT3A (ENSNLEG00000014118) #25	WNT9A (ENSNLEG00000014116) #26	PRSS38 (ENSNLEG00000014112)	SNAP47 (ENSNLEG00000014097)	JMJD4 (ENSNLEG00000032639)	ENSNLEG00000031801	ZNF678 (ENSNLEG00000008917)	CDC42BPA (ENSNLEG00000013980)	COQ8A (ENSNLEG00000013937)	PSEN2 (ENSNLEG00000013924)	ITPKB (ENSNLEG00000013915)	ENSNLEG00000013913	ENSNLEG00000032044
Platyrrhini	ANCESTRAL SPECIES	55			ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.bb.a #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00910000148176	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT00940000162246	ENSGT01090000259995.b.b.a.a.a	ENSGT00730000111648
Cebidae	ANCESTRAL SPECIES	23	ENSGT00390000018900	ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.bb.a #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT00940000162246	ENSGT01090000259995.b.b.a.a.a	ENSGT00730000111648	ENSGT00570000079564
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00390000018900	ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000016274 #16	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.bb.a #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT00940000162246	ENSGT01090000260018.C.b.a.a	ENSGT00570000079564	ENSGT00390000018500.a
Bolivian squirrel monkey	MODERN SPECIES	114	SMYD3 (ENSSBOG00000026164)	ENSSBOG00000035160	TFB2M (ENSSBOG00000033950)	CNST (ENSSBOG00000028424)	SCCPDH (ENSSBOG00000021995)	AHCTF1 (ENSSBOG00000004404)	ENSSBOG00000019925 #8	H2BC26 (ENSSBOG00000008375) #9	H2AC25 (ENSSBOG00000019953) #10	TRIM17 (ENSSBOG00000030344) #12	TRIM11 (ENSSBOG00000005125) #13	OBSCN (ENSSBOG00000032380) #15	IBA57 (ENSSBOG00000022497) #17	GUK1 (ENSSBOG00000026897) #19	MRPL55 (ENSSBOG00000035388) #21	C1orf35 (ENSSBOG00000023673) #22	ENSSBOG00000030557 #23	WNT3A (ENSSBOG00000020846) #25	WNT9A (ENSSBOG00000025218) #26	PRSS38 (ENSSBOG00000025229)	ENSSBOG00000025438	JMJD4 (ENSSBOG00000026344)	ENSSBOG00000021324	ZNF496 (ENSSBOG00000005783)	NLRP3 (ENSSBOG00000030084)	OR2B11 (ENSSBOG00000031196)	OR2C3 (ENSSBOG00000028292)	GCSAML (ENSSBOG00000033373)	TRIM58 (ENSSBOG00000024282)	ENSSBOG00000026393	LYPD8 (ENSSBOG00000032248)
Capuchin	MODERN SPECIES	75	ENSCCAG00000025344	RNF187 (ENSCCAG00000028705) #7	ENSCCAG00000012567 #8	H2BU1 (ENSCCAG00000015023) #9	H2AW (ENSCCAG00000012315) #10	ENSCCAG00000036407	TRIM17 (ENSCCAG00000025121) #12	TRIM11 (ENSCCAG00000036943) #13	ENSCCAG00000016195	OBSCN (ENSCCAG00000032571) #15	ENSCCAG00000023630 #16	IBA57 (ENSCCAG00000019844) #17	GJC2 (ENSCCAG00000020287) #18	GUK1 (ENSCCAG00000035707) #19	MRPL55 (ENSCCAG00000031724) #21	C1orf35 (ENSCCAG00000020266) #22	ENSCCAG00000023374 #23	WNT3A (ENSCCAG00000009359) #25	WNT9A (ENSCCAG00000030978) #26	PRSS38 (ENSCCAG00000020907)	SNAP47 (ENSCCAG00000027134)	JMJD4 (ENSCCAG00000035807)	ENSCCAG00000021671	ENSCCAG00000031402	ZNF670 (ENSCCAG00000027449)	ZNF124 (ENSCCAG00000026559)
Marmoset	MODERN SPECIES	10	SCCPDH (ENSCJAG00000016806)	AHCTF1 (ENSCJAG00000016790)	ENSCJAG00000082135	ENSCJAG00000059253	RNF187 (ENSCJAG00000016779) #7	ENSCJAG00000071519 #8	H2BC26 (ENSCJAG00000077602) #9	H2AC25 (ENSCJAG00000083637) #10	TRIM17 (ENSCJAG00000016765) #12	TRIM11 (ENSCJAG00000016757) #13	OBSCN (ENSCJAG00000054288) #15	IBA57 (ENSCJAG00000016749) #17	GJC2 (ENSCJAG00000016746) #18	ENSCJAG00000016738 #19	MRPL55 (ENSCJAG00000016730) #21	C1orf35 (ENSCJAG00000016721) #22	ARF1 (ENSCJAG00000041786) #23	WNT3A (ENSCJAG00000016650) #25	WNT9A (ENSCJAG00000080517) #26	SNAP47 (ENSCJAG00000039821)	JMJD4 (ENSCJAG00000011727)	ZNF669 (ENSCJAG00000048657)	ZNF670 (ENSCJAG00000011738)	ZNF124 (ENSCJAG00000011765)	ENSCJAG00000082577	ENSCJAG00000066453	ZNF496 (ENSCJAG00000011781)	NLRP3 (ENSCJAG00000011813)	OR2B11 (ENSCJAG00000075428)	GCSAML (ENSCJAG00000043513)	OR13G1 (ENSCJAG00000022631)
Mas night monkey	MODERN SPECIES	1116				ENSANAG00000026087	ENSANAG00000031738 #8	H2BC26 (ENSANAG00000010772) #9	H2AC25 (ENSANAG00000031714) #10	ENSANAG00000022375	ENSANAG00000028749 #12	TRIM11 (ENSANAG00000034240) #13	OBSCN (ENSANAG00000024031) #15	ENSANAG00000029250 #16	IBA57 (ENSANAG00000022164) #17	GUK1 (ENSANAG00000027172) #19	MRPL55 (ENSANAG00000036592) #21	C1orf35 (ENSANAG00000020714) #22	ENSANAG00000036021 #23	WNT3A (ENSANAG00000021377) #25	WNT9A (ENSANAG00000032624) #26	SNAP47 (ENSANAG00000035151)	JMJD4 (ENSANAG00000028105)	ENSANAG00000022916	ZNF669 (ENSANAG00000013317)	ZNF670 (ENSANAG00000033492)	ZNF124 (ENSANAG00000029658)	ZNF496 (ENSANAG00000022228)	NLRP3 (ENSANAG00000030863)	OR2C3 (ENSANAG00000035800)	GCSAML (ENSANAG00000030297)	OR1C1 (ENSANAG00000026494)	TRIM58 (ENSANAG00000028275)
Tarsier	MODERN SPECIES	5065					ENSTSYG00000036415 #8	H2BC26 (ENSTSYG00000029005) #9	H2AC25 (ENSTSYG00000026130) #10	H3-4 (ENSTSYG00000037257) #11	TRIM17 (ENSTSYG00000008473) #12	TRIM11 (ENSTSYG00000029832) #13	OBSCN (ENSTSYG00000031392) #15	ENSTSYG00000006833 #16	IBA57 (ENSTSYG00000014591) #17	GUK1 (ENSTSYG00000001325) #19	MRPL55 (ENSTSYG00000002932) #21	CUNH1orf35 (ENSTSYG00000031003) #22	ARF1 (ENSTSYG00000027538) #23	WNT3A (ENSTSYG00000027346) #25	WNT9A (ENSTSYG00000025543) #26	PRSS38 (ENSTSYG00000011299)	SNAP47 (ENSTSYG00000034505)	JMJD4 (ENSTSYG00000000484)	ENSTSYG00000028507	ENSTSYG00000002726	ENSTSYG00000034800	ZNF669 (ENSTSYG00000003204)	ENSTSYG00000010242
Strepsirrhini	ANCESTRAL SPECIES	52			ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000153165.a.a.d.j	ENSGT01100000263507.D.a.a.b.b.b.b.b	ENSGT00940000164205
Lemuriformes	ANCESTRAL SPECIES	18			ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000159259.b	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000160555	ENSGT00730000111087	ENSGT00940000157358	ENSGT00940000162379	ENSGT00940000157028	ENSGT01050000244864.B.b
Lemuriformes_a	ANCESTRAL SPECIES	88			ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000159259.b	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000160555	ENSGT00730000111087	ENSGT00940000157358	ENSGT00940000162379	ENSGT00940000157028	ENSGT01050000244864.B.b
Coquerels sifaka	MODERN SPECIES	234			ENSPCOG00000026534	ENSPCOG00000024361	RNF187 (ENSPCOG00000002810) #7	ENSPCOG00000005164 #8	H2BC26 (ENSPCOG00000003934) #9	H2AC25 (ENSPCOG00000013826) #10	H3-4 (ENSPCOG00000026493) #11	TRIM17 (ENSPCOG00000026287) #12	TRIM11 (ENSPCOG00000016532) #13	OBSCN (ENSPCOG00000028285) #15	IBA57 (ENSPCOG00000028589) #17	GUK1 (ENSPCOG00000009766) #19	MRPL55 (ENSPCOG00000013827) #21	C1orf35 (ENSPCOG00000025028) #22	ARF1 (ENSPCOG00000026770) #23	WNT3A (ENSPCOG00000024931) #25	WNT9A (ENSPCOG00000015468) #26	PRSS38 (ENSPCOG00000019582)	SNAP47 (ENSPCOG00000012484)	JMJD4 (ENSPCOG00000019446)	ENSPCOG00000024700	ATP12A (ENSPCOG00000025271)	RNF17 (ENSPCOG00000020211)	CENPJ (ENSPCOG00000016218)	PARP4 (ENSPCOG00000022852)	MPHOSPH8 (ENSPCOG00000020055)	PSPC1 (ENSPCOG00000014364)	ZMYM5 (ENSPCOG00000000658)	ZMYM2 (ENSPCOG00000021632)
Greater bamboo lemur	MODERN SPECIES	769				ENSPSMG00000013365 #8	H2BC26 (ENSPSMG00000013352) #9	ENSPSMG00000013337 ##10	ENSPSMG00000013327	TRIM17 (ENSPSMG00000013322) #12	TRIM11 (ENSPSMG00000013308) #13	ENSPSMG00000013289 #15	ENSPSMG00000013283 #15	IBA57 (ENSPSMG00000013279) #17	GJC2 (ENSPSMG00000013273) #18	GUK1 (ENSPSMG00000013269) #19	MRPL55 (ENSPSMG00000013256) #21	C1orf35 (ENSPSMG00000013245) #22	ARF1 (ENSPSMG00000013226) #23	ENSPSMG00000013201 #25
Mouse lemur	MODERN SPECIES	4	ENSMICG00000026956	ENSMICG00000026371	ENSMICG00000045969	ENSMICG00000046509	ENSMICG00000038421	ENSMICG00000048090 #8	H2BC26 (ENSMICG00000041996) #9	H2AC25 (ENSMICG00000044054) #10	H3-4 (ENSMICG00000045112) #11	TRIM17 (ENSMICG00000013315) #12	TRIM11 (ENSMICG00000029090) #13	OBSCN (ENSMICG00000000557) #15	IBA57 (ENSMICG00000041871) #17	GUK1 (ENSMICG00000003322) #19	MRPL55 (ENSMICG00000031760) #21	C1orf35 (ENSMICG00000027688) #22	ARF1 (ENSMICG00000047362) #23	WNT3A (ENSMICG00000010671) #25	WNT9A (ENSMICG00000047095) #26	PRSS38 (ENSMICG00000042943)	SNAP47 (ENSMICG00000029011)	JMJD4 (ENSMICG00000036474)	ENSMICG00000042765	ATP12A (ENSMICG00000007697)	RNF17 (ENSMICG00000010364)	CENPJ (ENSMICG00000010400)	PARP4 (ENSMICG00000028028)	MPHOSPH8 (ENSMICG00000014677)	PSPC1 (ENSMICG00000013970)	ZMYM5 (ENSMICG00000012322)	ZMYM2 (ENSMICG00000002834)
Bushbaby	MODERN SPECIES	400			ENSOGAG00000030822	RNF187 (ENSOGAG00000011214) #7	ENSOGAG00000031086 #8	H2BC26 (ENSOGAG00000009221) #9	H2AC25 (ENSOGAG00000009219) #10	H3-4 (ENSOGAG00000031879) #11	TRIM17 (ENSOGAG00000009217) #12	TRIM11 (ENSOGAG00000009216) #13	ENSOGAG00000030331 #15	IBA57 (ENSOGAG00000009178) #17	GJC2 (ENSOGAG00000033132) #18	GUK1 (ENSOGAG00000029450) #19	MRPL55 (ENSOGAG00000010981) #21	C1orf35 (ENSOGAG00000010978) #22	ARF1 (ENSOGAG00000010974) #23	WNT3A (ENSOGAG00000013493) #25	WNT9A (ENSOGAG00000013474) #26	PRSS38 (ENSOGAG00000026355)	SNAP47 (ENSOGAG00000004945)	JMJD4 (ENSOGAG00000004942)	ENSOGAG00000003566	ENSOGAG00000028076
Euarchontoglires_A	ANCESTRAL SPECIES	28			ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.a.b	ENSGT01060000248581.C.a.a
Glires	ANCESTRAL SPECIES	29			ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.a.b	ENSGT01060000248581.C.a.a
Rodentia	ANCESTRAL SPECIES	7			ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b
Rodentia_B	ANCESTRAL SPECIES	46	ENSGT00940000162246	ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b
Myomorpha	ANCESTRAL SPECIES	28	ENSGT00390000006224	ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b
Muroidea	ANCESTRAL SPECIES	10	ENSGT00390000006224	ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT00940000155286	ENSGT00390000004368
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT00940000155286	ENSGT00390000004368
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b
Prairie vole	MODERN SPECIES	15	ENSMOCG00000003250	Zfp39 (ENSMOCG00000017961)	Btnl10 (ENSMOCG00000005486)	Rnf187 (ENSMOCG00000021645)	H2bc27 (ENSMOCG00000002061) #8	H2bc26-ps (ENSMOCG00000003080) #9	H2ac25 (ENSMOCG00000002942) #10	H3f4 (ENSMOCG00000002973) #11	Trim17 (ENSMOCG00000016644) #12	Trim11 (ENSMOCG00000021941) #13	Obscn (ENSMOCG00000009245) #15	Iba57 (ENSMOCG00000019048) #17	Gjc2 (ENSMOCG00000015445) #18	Guk1 (ENSMOCG00000020868) #19	Mrpl55 (ENSMOCG00000022355) #21	2310033P09Rik (ENSMOCG00000020633) #22	Arf1 (ENSMOCG00000005344) #23	Wnt3a (ENSMOCG00000022805) #25	Wnt9a (ENSMOCG00000022972) #26	Prss38 (ENSMOCG00000020492)	Snap47 (ENSMOCG00000021698)	Jmjd4 (ENSMOCG00000019517)	Zfp867 (ENSMOCG00000017475)	Zkscan17 (ENSMOCG00000021773)	ENSMOCG00000007500	ENSMOCG00000004021	Nlrp3 (ENSMOCG00000022962)	Or2b11 (ENSMOCG00000002219)	Or2w25 (ENSMOCG00000002703)	ENSMOCG00000002772	ENSMOCG00000020749
Northern American deer mouse	MODERN SPECIES	21	2810021J22Rik (ENSPEMG00000028205)	Zfp39 (ENSPEMG00000009428)	Btnl10 (ENSPEMG00000010544)	ENSPEMG00000024885 #7	H2bc27 (ENSPEMG00000029370) #8	H2bc26-ps (ENSPEMG00000029564) #9	H2ac25 (ENSPEMG00000025825) #10	H3f4 (ENSPEMG00000028465) #11	Trim17 (ENSPEMG00000012957) #12	Trim11 (ENSPEMG00000013300) #13	Obscn (ENSPEMG00000017360) #15	Iba57 (ENSPEMG00000029448) #17	Gjc2 (ENSPEMG00000015748) #18	Guk1 (ENSPEMG00000007733) #19	Mrpl55 (ENSPEMG00000010381) #21	2310033P09Rik (ENSPEMG00000016726) #22	Arf1 (ENSPEMG00000024884) #23	Wnt3a (ENSPEMG00000014970) #25	Wnt9a (ENSPEMG00000008917) #26	ENSPEMG00000026476	Prss38 (ENSPEMG00000000315)	Snap47 (ENSPEMG00000003186)	Jmjd4 (ENSPEMG00000025158)	Zfp867 (ENSPEMG00000015201)	Zkscan17 (ENSPEMG00000028678)	Nlrp3 (ENSPEMG00000018349)	Or2b11 (ENSPEMG00000027692)	ENSPEMG00000027834	Mprip (ENSPEMG00000005808)	Pld6 (ENSPEMG00000002262)	Flcn (ENSPEMG00000001290)
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT00940000155286	ENSGT00390000004368
Golden Hamster	MODERN SPECIES	627	Zfp39 (ENSMAUG00000001536)	Btnl10 (ENSMAUG00000021399)	ENSMAUG00000020727	ENSMAUG00000021471 #7	H2bc27 (ENSMAUG00000010540) #8	H2bc26-ps (ENSMAUG00000010794) #9	H2ac25 (ENSMAUG00000010628) #10	ENSMAUG00000010470	H3f4 (ENSMAUG00000010700) #11	Trim17 (ENSMAUG00000004817) #12	Trim11 (ENSMAUG00000001510) #13	Obscn (ENSMAUG00000022279) #15	Iba57 (ENSMAUG00000020575) #17	Gjc2 (ENSMAUG00000020150) #18	Guk1 (ENSMAUG00000022283) #19	2310033P09Rik (ENSMAUG00000019958) #22	ENSMAUG00000022253 #23	Wnt3a (ENSMAUG00000021475) #25	Wnt9a (ENSMAUG00000021643) #26	Prss38 (ENSMAUG00000019978)	Snap47 (ENSMAUG00000020014)	Jmjd4 (ENSMAUG00000017265)	ENSMAUG00000019046	Zkscan17 (ENSMAUG00000016630)	ENSMAUG00000017910	ENSMAUG00000006329	Nlrp3 (ENSMAUG00000020051)	Or2b11 (ENSMAUG00000010476)	Or2w25 (ENSMAUG00000020886)	ENSMAUG00000015837	Pld6 (ENSMAUG00000013977)
Chinese hamster chok1gshd	MODERN SPECIES	229	2810021J22Rik (ENSCGRG00001001041)	Zfp39 (ENSCGRG00001002406)	ENSCGRG00001015992	ENSCGRG00001017170 #7	H2ac25 (ENSCGRG00001008750) #10	H2bc26-ps (ENSCGRG00001013795) #9	H2bc27 (ENSCGRG00001005703) #8	ENSCGRG00001009610 #11	Trim17 (ENSCGRG00001017038) #12	Trim11 (ENSCGRG00001016227) #13	Obscn (ENSCGRG00001023809) #15	Iba57 (ENSCGRG00001007484) #17	Gjc2 (ENSCGRG00001008796) #18	ENSCGRG00001016847 #19	Mrpl55 (ENSCGRG00001020506) #21	2310033P09Rik (ENSCGRG00001021154) #22	Arf1 (ENSCGRG00001013922) #23	Wnt3a (ENSCGRG00001015217) #25	Wnt9a (ENSCGRG00001016816) #26	Prss38 (ENSCGRG00001019522)	Snap47 (ENSCGRG00001004500)	Jmjd4 (ENSCGRG00001013252)	Zfp867 (ENSCGRG00001016010)	Zkscan17 (ENSCGRG00001020767)	ENSCGRG00001021260	Nlrp3 (ENSCGRG00001021138)	Or2b11 (ENSCGRG00001008156)	Or2aa1 (ENSCGRG00001007439)	ENSCGRG00001005098	Mprip (ENSCGRG00001003308)	Pld6 (ENSCGRG00001021455)
Murinae	ANCESTRAL SPECIES	7	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00950000183522	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864
Mus	ANCESTRAL SPECIES	2	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00950000183522	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00950000183522	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.g.a #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00950000183522	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.g.a #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00950000183522	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.g.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864
spretus	MODERN SPECIES	2	Fam183b (MGP_SPRETEiJ_G0017251)	Gm12258 (MGP_SPRETEiJ_G0017252)	2810021J22Rik (MGP_SPRETEiJ_G0017253)	Zfp39 (MGP_SPRETEiJ_G0017254)	Btnl10 (MGP_SPRETEiJ_G0017255)	MGP_SPRETEiJ_G0017256	H2bc27 (MGP_SPRETEiJ_G0017257) #8	H2ac25 (MGP_SPRETEiJ_G0017258) #10	Trim17 (MGP_SPRETEiJ_G0017259) #12	Trim11 (MGP_SPRETEiJ_G0017260) #13	Obscn (MGP_SPRETEiJ_G0017261) #15	Iba57 (MGP_SPRETEiJ_G0017262) #17	Gjc2 (MGP_SPRETEiJ_G0017263) #18	Guk1 (MGP_SPRETEiJ_G0017264) #19	Mrpl55 (MGP_SPRETEiJ_G0017265) #21	2310033P09Rik (MGP_SPRETEiJ_G0017266) #22	Wnt3a (MGP_SPRETEiJ_G0017267) #25	Wnt9a (MGP_SPRETEiJ_G0017268) #26	Prss38 (MGP_SPRETEiJ_G0017269)	Snap47 (MGP_SPRETEiJ_G0017270)	Jmjd4 (MGP_SPRETEiJ_G0017271)	Zfp867 (MGP_SPRETEiJ_G0017272)	Zkscan17 (MGP_SPRETEiJ_G0017273)	Nlrp3 (MGP_SPRETEiJ_G0017274)	Or2b11 (MGP_SPRETEiJ_G0017275)	MGP_SPRETEiJ_G0017276	MGP_SPRETEiJ_G0009402	Mprip (MGP_SPRETEiJ_G0017277)	Pld6 (MGP_SPRETEiJ_G0017278)	Flcn (MGP_SPRETEiJ_G0017279)	Cops3 (MGP_SPRETEiJ_G0017280)
Steppe mouse	MODERN SPECIES	3105	Btnl10 (ENSMSIG00000021827)	ENSMSIG00000021818	H2bc27 (ENSMSIG00000021813) #8	H2bc26-ps (ENSMSIG00000021777) #9	H2ac25 (ENSMSIG00000021773) #10	H3f4 (ENSMSIG00000021760) #11	Trim17 (ENSMSIG00000021747) #12	Trim11 (ENSMSIG00000021692) #13	ENSMSIG00000021680	Obscn (ENSMSIG00000021262) #15	ENSMSIG00000021247	Iba57 (ENSMSIG00000021231) #17	Gjc2 (ENSMSIG00000021219) #18	Guk1 (ENSMSIG00000021189) #19	Mrpl55 (ENSMSIG00000021173) #21	2310033P09Rik (ENSMSIG00000021149) #22	ENSMSIG00000021128 #23	Wnt3a (ENSMSIG00000021119) #25	Wnt9a (ENSMSIG00000021113) #26	Prss38 (ENSMSIG00000021101)	Snap47 (ENSMSIG00000021067)	Jmjd4 (ENSMSIG00000021041)	Zfp867 (ENSMSIG00000021023)	ENSMSIG00000021018	Zkscan17 (ENSMSIG00000020997)	ENSMSIG00000020992	ENSMSIG00000020981	Nlrp3 (ENSMSIG00000020937)	Or2b11 (ENSMSIG00000020930)	Or2aa1 (ENSMSIG00000020924)	Mprip (ENSMSIG00000020270)
Mouse	MODERN SPECIES	2	2810021J22Rik (ENSMUSG00000020491)	Zfp39 (ENSMUSG00000037001)	Btnl10 (ENSMUSG00000020490)	Rnf187 (ENSMUSG00000020496)	H2bc27 (ENSMUSG00000056895) #8	H2bc26-ps (ENSMUSG00000080712) #9	H2ac25 (ENSMUSG00000078851) #10	Trim17 (ENSMUSG00000036964) #12	H3f4 (ENSMUSG00000080152) #11	Trim11 (ENSMUSG00000020455) #13	Obscn (ENSMUSG00000061462) #15	Iba57 (ENSMUSG00000049287) #17	Gjc2 (ENSMUSG00000043448) #18	Guk1 (ENSMUSG00000020444) #19	Mrpl55 (ENSMUSG00000036860) #21	2310033P09Rik (ENSMUSG00000020441) #22	Arf1 (ENSMUSG00000048076) #23	Wnt3a (ENSMUSG00000009900) #25	Wnt9a (ENSMUSG00000000126) #26	Prss38 (ENSMUSG00000049291)	Snap47 (ENSMUSG00000009894)	Jmjd4 (ENSMUSG00000036819)	Zfp867 (ENSMUSG00000054519)	Zkscan17 (ENSMUSG00000020472)	Nlrp3 (ENSMUSG00000032691)	Or2b11 (ENSMUSG00000059610)	Or2aa1 (ENSMUSG00000048919)	Or2w25 (ENSMUSG00000044061)	Mprip (ENSMUSG00000005417)	Pld6 (ENSMUSG00000043648)	Flcn (ENSMUSG00000032633)
Ryukyu mouse	MODERN SPECIES	2	Fam183b (MGP_CAROLIEiJ_G0016414)	Gm12258 (MGP_CAROLIEiJ_G0016415)	2810021J22Rik (MGP_CAROLIEiJ_G0016416)	Zfp39 (MGP_CAROLIEiJ_G0016417)	Btnl10 (MGP_CAROLIEiJ_G0016418)	MGP_CAROLIEiJ_G0016419	H2bc27 (MGP_CAROLIEiJ_G0016420) #8	H2ac25 (MGP_CAROLIEiJ_G0016422) #10	Trim17 (MGP_CAROLIEiJ_G0016421) #12	Trim11 (MGP_CAROLIEiJ_G0016423) #13	MGP_CAROLIEiJ_G0016424 #15	Iba57 (MGP_CAROLIEiJ_G0016425) #17	Gjc2 (MGP_CAROLIEiJ_G0016426) #18	Guk1 (MGP_CAROLIEiJ_G0016427) #19	Mrpl55 (MGP_CAROLIEiJ_G0016428) #21	2310033P09Rik (MGP_CAROLIEiJ_G0016429) #22	MGP_CAROLIEiJ_G0016430 #23	MGP_CAROLIEiJ_G0016431 #23	Wnt3a (MGP_CAROLIEiJ_G0016432) #25	Wnt9a (MGP_CAROLIEiJ_G0016433) #26	Prss38 (MGP_CAROLIEiJ_G0016434)	MGP_CAROLIEiJ_G0016435	Jmjd4 (MGP_CAROLIEiJ_G0016436)	Zfp867 (MGP_CAROLIEiJ_G0016437)	Zkscan17 (MGP_CAROLIEiJ_G0016438)	Nlrp3 (MGP_CAROLIEiJ_G0016439)	Or2b11 (MGP_CAROLIEiJ_G0016440)	Or2aa1 (MGP_CAROLIEiJ_G0016441)	Or2w25 (MGP_CAROLIEiJ_G0008942)	Mprip (MGP_CAROLIEiJ_G0016442)	Pld6 (MGP_CAROLIEiJ_G0016443)
Shrew mouse	MODERN SPECIES	5	Fam183b (MGP_PahariEiJ_G0017545)	Gm12258 (MGP_PahariEiJ_G0017546)	2810021J22Rik (MGP_PahariEiJ_G0017547)	Zfp39 (MGP_PahariEiJ_G0017548)	Btnl10 (MGP_PahariEiJ_G0017549)	MGP_PahariEiJ_G0017550	H2bc27 (MGP_PahariEiJ_G0017551) #8	H2ac25 (MGP_PahariEiJ_G0017552) #10	Trim17 (MGP_PahariEiJ_G0017553) #12	Trim11 (MGP_PahariEiJ_G0017554) #13	Obscn (MGP_PahariEiJ_G0017555) #15	Iba57 (MGP_PahariEiJ_G0017556) #17	Gjc2 (MGP_PahariEiJ_G0017557) #18	Guk1 (MGP_PahariEiJ_G0017558) #19	Mrpl55 (MGP_PahariEiJ_G0017559) #21	2310033P09Rik (MGP_PahariEiJ_G0017560) #22	Arf1 (MGP_PahariEiJ_G0017561) #23	Wnt3a (MGP_PahariEiJ_G0017562) #25	Wnt9a (MGP_PahariEiJ_G0017563) #26	Prss38 (MGP_PahariEiJ_G0017564)	MGP_PahariEiJ_G0017565	Jmjd4 (MGP_PahariEiJ_G0017566)	Zfp867 (MGP_PahariEiJ_G0017567)	Zkscan17 (MGP_PahariEiJ_G0017568)	MGP_PahariEiJ_G0017569	Or2b11 (MGP_PahariEiJ_G0017570)	Or2aa1 (MGP_PahariEiJ_G0017571)	Or2w25 (MGP_PahariEiJ_G0008415)	Mprip (MGP_PahariEiJ_G0017572)	Pld6 (MGP_PahariEiJ_G0017573)	Flcn (MGP_PahariEiJ_G0017574)
Rat	MODERN SPECIES	1	RGD1561277 (ENSRNOG00000051868)	LOC102555635 (ENSRNOG00000023431)	Zfp39 (ENSRNOG00000014712)	Btnl10 (ENSRNOG00000043019)	Rnf187 (ENSRNOG00000049219)	Hist3h2ba (ENSRNOG00000043419) #8	H2bu1 (ENSRNOG00000066919) #9	H2ac25 (ENSRNOG00000064520) #10	H2ac25 (ENSRNOG00000022983) #12	Trim11 (ENSRNOG00000002915) #13	Obscn (ENSRNOG00000058068) #15	Iba57 (ENSRNOG00000068756) #17	Gjc2 (ENSRNOG00000038328) #18	Guk1 (ENSRNOG00000002928) #19	Mrpl55 (ENSRNOG00000002943) #21	C10h1orf35 (ENSRNOG00000002944) #22	Arf1 (ENSRNOG00000060229) #23	Wnt3a (ENSRNOG00000003039) #25	Wnt9a (ENSRNOG00000003066) #26	Prss38 (ENSRNOG00000022548)	Snap47 (ENSRNOG00000022472)	Jmjd4 (ENSRNOG00000022438)	Zfp867 (ENSRNOG00000022431)	Ftl1 (ENSRNOG00000020843)	Zfp496 (ENSRNOG00000003129)	Nlrp3 (ENSRNOG00000003170)	Or2b11 (ENSRNOG00000022244)	Or2aa1 (ENSRNOG00000003210)	Mprip (ENSRNOG00000003226)	Pld6 (ENSRNOG00000021657)	Flcn (ENSRNOG00000003302)
Upper Galilee mountains blind mole rat	MODERN SPECIES	361															Mrpl55 (ENSNGAG00000023889) #21	2310033P09Rik (ENSNGAG00000016568) #22	Arf1 (ENSNGAG00000015070) #23	Wnt3a (ENSNGAG00000018479) #25	Wnt9a (ENSNGAG00000010691) #26	Prss38 (ENSNGAG00000012956)	Snap47 (ENSNGAG00000021482)	Jmjd4 (ENSNGAG00000023540)	Zfp867 (ENSNGAG00000020914)	Zkscan17 (ENSNGAG00000021846)	Nlrp3 (ENSNGAG00000013972)	Or2b11 (ENSNGAG00000011866)	ENSNGAG00000023903
Lesser Egyptian jerboa	MODERN SPECIES	63	Fam183b (ENSJJAG00000018849)	ENSJJAG00000000550	Zfp39 (ENSJJAG00000018925)	Btnl10 (ENSJJAG00000023413)	ENSJJAG00000011864 #7	H2bc26-ps (ENSJJAG00000003959) #9	H2ac25 (ENSJJAG00000004184) #10	ENSJJAG00000017460 ##11	Trim17 (ENSJJAG00000017850) #12	Trim11 (ENSJJAG00000019654) #13	Obscn (ENSJJAG00000023196) #15	Iba57 (ENSJJAG00000023432) #17	Gjc2 (ENSJJAG00000011405) #18	Guk1 (ENSJJAG00000021658) #19	Mrpl55 (ENSJJAG00000021164) #21	2310033P09Rik (ENSJJAG00000001888) #22	ENSJJAG00000020245 #23	Wnt3a (ENSJJAG00000020598) #25	Wnt9a (ENSJJAG00000020971) #26	Prss38 (ENSJJAG00000022512)	Snap47 (ENSJJAG00000023009)	Jmjd4 (ENSJJAG00000012776)	Zfp867 (ENSJJAG00000008459)	Zkscan17 (ENSJJAG00000022828)	Nlrp3 (ENSJJAG00000007323)	Or2b11 (ENSJJAG00000004515)	Or2aa1 (ENSJJAG00000021579)	ENSJJAG00000020201	ENSJJAG00000019586	ENSJJAG00000004303	ENSJJAG00000005004
Rodentia_A	ANCESTRAL SPECIES	31			ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b
Hystricomorpha	ANCESTRAL SPECIES	63			ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a.c	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01060000248581.C.a.b.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	79				ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01060000248581.C.a.b.a.a	ENSGT01090000260018.C.b.a.a.x
Hystricomorpha_b	ANCESTRAL SPECIES	106				ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01060000248581.C.a.b.a.a
Long-tailed chinchilla	MODERN SPECIES	288					ENSCLAG00000001377	ENSCLAG00000001526	RNF187 (ENSCLAG00000001629) #7	ENSCLAG00000017452 #8	H2BC26 (ENSCLAG00000017444) #9	TRIM17 (ENSCLAG00000000538) #12	TRIM11 (ENSCLAG00000000197) #13	ENSCLAG00000000505 #15	IBA57 (ENSCLAG00000000741) #17	GUK1 (ENSCLAG00000000853) #19	MRPL55 (ENSCLAG00000000917) #21	C1orf35 (ENSCLAG00000001077) #22	ARF1 (ENSCLAG00000000520) #23	WNT3A (ENSCLAG00000000529) #25	WNT9A (ENSCLAG00000000535) #26	SNAP47 (ENSCLAG00000000744)	JMJD4 (ENSCLAG00000000501)	ZNF496 (ENSCLAG00000000579)	NLRP3 (ENSCLAG00000000708)	OR2B11 (ENSCLAG00000017578)	ENSCLAG00000000375	OR2G3 (ENSCLAG00000017414)	OR9H1P (ENSCLAG00000017416)	ENSCLAG00000000640	ENSCLAG00000000675
Degu	MODERN SPECIES	351						ENSODEG00000000805	ENSODEG00000000778	RNF187 (ENSODEG00000000732) #7	ENSODEG00000018714 #8	TRIM17 (ENSODEG00000001638) #12	TRIM11 (ENSODEG00000001136) #13	IBA57 (ENSODEG00000001118) #17	GJC2 (ENSODEG00000018947) #18	GUK1 (ENSODEG00000001088) #19	MRPL55 (ENSODEG00000001067) #21	C1orf35 (ENSODEG00000000976) #22	ENSODEG00000000958 #23	WNT3A (ENSODEG00000000874) #25	WNT9A (ENSODEG00000001287) #26	ENSODEG00000001243	JMJD4 (ENSODEG00000001154)	ZNF496 (ENSODEG00000001108)	ENSODEG00000001075	NLRP3 (ENSODEG00000001033)	OR2B11 (ENSODEG00000018706)	OR2C3 (ENSODEG00000018646)	ENSODEG00000001954	OR2G3 (ENSODEG00000018774)	ENSODEG00000001509
Guinea pig	MODERN SPECIES	6	KDM3B (ENSCPOG00000002353)	FAM53C (ENSCPOG00000030846)	GFRA3 (ENSCPOG00000006594)	CDC23 (ENSCPOG00000010715)	ENSCPOG00000036704	RNF187 (ENSCPOG00000007405) #7	ENSCPOG00000021756 #8	ENSCPOG00000040098	H3-4 (ENSCPOG00000034653) #11	TRIM17 (ENSCPOG00000004213) #12	TRIM11 (ENSCPOG00000037756) #13	IBA57 (ENSCPOG00000035382) #17	GJC2 (ENSCPOG00000015099) #18	GUK1 (ENSCPOG00000037747) #19	MRPL55 (ENSCPOG00000014241) #21	C1orf35 (ENSCPOG00000000984) #22	ARF1 (ENSCPOG00000039117) #23	WNT3A (ENSCPOG00000030339) #25	WNT9A (ENSCPOG00000040771) #26	PRSS38 (ENSCPOG00000022885)	SNAP47 (ENSCPOG00000008518)	JMJD4 (ENSCPOG00000014538)
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000033964	ENSHGLG00000049243	ENSHGLG00000038457	ENSHGLG00000000597 #7	ENSHGLG00000035981 #8	H2BC26 (ENSHGLG00000044541) #9	H2AC25 (ENSHGLG00000037975) #10	H3-4 (ENSHGLG00000020558) #11	TRIM17 (ENSHGLG00000006970) #12	TRIM11 (ENSHGLG00000002253) #13	OBSCN (ENSHGLG00000047806) #15	IBA57 (ENSHGLG00000002132) #17	GJC2 (ENSHGLG00000033969) #18	GUK1 (ENSHGLG00000000309) #19	MRPL55 (ENSHGLG00000048301) #21	ENSHGLG00000001640 #22	ARF1 (ENSHGLG00000038119) #23	WNT3A (ENSHGLG00000001502) #25	WNT9A (ENSHGLG00000038418) #26	PRSS38 (ENSHGLG00000043627)	ENSHGLG00000001357	JMJD4 (ENSHGLG00000001365)	ENSHGLG00000047340	ENSHGLG00000001102	ENSHGLG00000043542	ENSHGLG00000000671	ENSHGLG00000000615	ENSHGLG00000041322	ENSHGLG00000045465	ENSHGLG00000035253	ENSHGLG00000019776
Sciuridae	ANCESTRAL SPECIES	55			ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.a.b	ENSGT01060000248581.C.a.a
Marmotini	ANCESTRAL SPECIES	100			ENSGT00940000163997	ENSGT00390000009510 #7	ENSGT01100000263474.a.b.b.e.b.a.b #8	ENSGT01100000263474.a.b.b.e.b.a.a #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a
Marmotini_b	ANCESTRAL SPECIES	218												ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25	ENSGT00940000159618 #26	ENSGT00940000154494.a	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b
Squirrel	MODERN SPECIES	463													IBA57 (ENSSTOG00000020525) #17	GJC2 (ENSSTOG00000009501) #18	GUK1 (ENSSTOG00000026156) #19	C1orf35 (ENSSTOG00000009295) #22	ENSSTOG00000009288 #23	WNT3A (ENSSTOG00000027360) #25	WNT9A (ENSSTOG00000008351) #26	PRSS38 (ENSSTOG00000027275)	SNAP47 (ENSSTOG00000028391)	JMJD4 (ENSSTOG00000006186)	ZNF496 (ENSSTOG00000027824)	NLRP3 (ENSSTOG00000010228)	OR2C3 (ENSSTOG00000008172)	ENSSTOG00000027492
Arctic ground squirrel	MODERN SPECIES	712													IBA57 (ENSUPAG00010009641) #17	GUK1 (ENSUPAG00010009613) #19	MRPL55 (ENSUPAG00010009599) #21	C1orf35 (ENSUPAG00010009587) #22	ENSUPAG00010009582	WNT3A (ENSUPAG00010009580) #25	WNT9A (ENSUPAG00010009568) #26	PRSS38 (ENSUPAG00010009560)	SNAP47 (ENSUPAG00010009551)	JMJD4 (ENSUPAG00010009540)	ENSUPAG00010009536	ENSUPAG00010009533	ENSUPAG00010009530	ENSUPAG00010009519	ZNF496 (ENSUPAG00010009506)
Eurasian red squirrel	MODERN SPECIES	15	ENSSVLG00005003828	RNF187 (ENSSVLG00005003848) #7	ENSSVLG00005003856 #8	H2BC26 (ENSSVLG00005003865) #9	H2AC25 (ENSSVLG00005003875) #10	H3-4 (ENSSVLG00005003884) #11	TRIM17 (ENSSVLG00005003894) #12	TRIM11 (ENSSVLG00005003920) #13	OBSCN (ENSSVLG00005004022) #15	IBA57 (ENSSVLG00005004163) #17	GJC2 (ENSSVLG00005004174) #18	ENSSVLG00005004192	GUK1 (ENSSVLG00005004220) #19	ENSSVLG00005004242	MRPL55 (ENSSVLG00005004258) #21	C1orf35 (ENSSVLG00005004286) #22	ENSSVLG00005004310 #23	WNT3A (ENSSVLG00005004327) #25	WNT9A (ENSSVLG00005004346) #26	PRSS38 (ENSSVLG00005004365)	SNAP47 (ENSSVLG00005004391)	JMJD4 (ENSSVLG00005004411)	NLRP3 (ENSSVLG00005004506)	OR2C3 (ENSSVLG00005004659)	GCSAML (ENSSVLG00005004676)	ENSSVLG00005004709	OR2G3 (ENSSVLG00005004718)	OR14L1P (ENSSVLG00005004728)	ENSSVLG00005004740	ENSSVLG00005004759	ENSSVLG00005004766
Lagomorpha	ANCESTRAL SPECIES	245								ENSGT01100000263514.A.e.b #11	ENSGT00940000162155 #12	ENSGT00940000160371 #13	ENSGT00940000154756.A #15	ENSGT00390000006465 #17	ENSGT01090000260005.a.a.a.b.a.a.a #18	ENSGT00940000155815 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #25
Rabbit	MODERN SPECIES	836												ENSOCUG00000024934 #17	ENSOCUG00000024517 ##18	ENSOCUG00000027935 #19	MRPL55 (ENSOCUG00000015380) #21	C1orf35 (ENSOCUG00000025634) #22	ENSOCUG00000023645 #23	WNT3A (ENSOCUG00000004048) #25
Pika	MODERN SPECIES	1850															ENSOPRG00000015086 #21	ENSOPRG00000015072 #22	ENSOPRG00000015063 #23