Gnathostomata	ANCESTRAL SPECIES	1379																ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b #23
Euteleostomi	ANCESTRAL SPECIES	175					ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00940000155330	ENSGT00390000003267	ENSGT00940000154756.A #17	ENSGT00940000154756.B ##17	ENSGT00940000167421	ENSGT00940000155815 #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b
Sarcopterygii	ANCESTRAL SPECIES	253										ENSGT00390000006465 #19	ENSGT00390000003267	ENSGT00940000154756.A #17	ENSGT00940000154756.B ##17	ENSGT00940000167421	ENSGT00940000155815 #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b
Tetrapoda	ANCESTRAL SPECIES	184													ENSGT00390000006465 #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b
Amniota	ANCESTRAL SPECIES	7	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000166800	ENSGT00940000158533
Mammalia	ANCESTRAL SPECIES	4	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01080000257342.H	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000163571	ENSGT00940000160086	ENSGT00940000166800	ENSGT00940000158533
Theria	ANCESTRAL SPECIES													ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00390000005082	ENSGT00940000161932	ENSGT00940000162829	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000163571	ENSGT00940000160086
Eutheria	ANCESTRAL SPECIES	46										ENSGT00390000016274	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Boreoeutheria	ANCESTRAL SPECIES	24			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a
Laurasiatheria	ANCESTRAL SPECIES	30			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a
Laurasiatheria_a	ANCESTRAL SPECIES	23			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.b	ENSGT01100000263486.a.b.a.b.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.a
Laurasiatheria_b	ANCESTRAL SPECIES	24									ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260086.C.a.b.a.a	ENSGT01090000260044.D.b.a.b	ENSGT01090000260086.C.a.b.b	ENSGT01090000260086.C.a.a	ENSGT01090000260045.C.e.a.b
Carnivora	ANCESTRAL SPECIES	28	ENSGT01090000259995.a.a.b.a.b.a ##7	ENSGT01030000234553.b.b.d.c.a #8	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Caniformia	ANCESTRAL SPECIES	34		ENSGT01030000234553.b.b.d.c.a #8	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Caniformia_b	ANCESTRAL SPECIES	41		ENSGT01030000234553.b.b.d.c.a.d #8	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A.gd.b #18	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Mustelinae	ANCESTRAL SPECIES	159		ENSGT01030000234553.b.b.d.c.a.d #8	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A.gd.b #18	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Ferret	MODERN SPECIES	525	ENSMPUG00000001090 #7	ENSMPUG00000018546 #8	ENSMPUG00000001088 #9	ENSMPUG00000001085 #10	ENSMPUG00000001083 #11	H2BC26 (ENSMPUG00000018539) #12	H2AC25 (ENSMPUG00000018534) #13	H3-4 (ENSMPUG00000018529) #14	TRIM11 (ENSMPUG00000001081) #15	ENSMPUG00000001079 #16	ENSMPUG00000001077 #17	ENSMPUG00000001039 #18	IBA57 (ENSMPUG00000001035) #19	GUK1 (ENSMPUG00000001011) #20	MRPL55 (ENSMPUG00000001004) #21	C1orf35 (ENSMPUG00000000996) #22	ARF1 (ENSMPUG00000000962) #23	WNT3A (ENSMPUG00000000960) #24	WNT9A (ENSMPUG00000000947) #25	PRSS38 (ENSMPUG00000000932) #26	SNAP47 (ENSMPUG00000000929) #27	JMJD4 (ENSMPUG00000000927) #28
American mink	MODERN SPECIES	522				ENSNVIG00000001218 #11	H2BC26 (ENSNVIG00000001207) #12	H2AC25 (ENSNVIG00000001203) #13	H3-4 (ENSNVIG00000001199) #14	TRIM17 (ENSNVIG00000001165)	TRIM11 (ENSNVIG00000001136) #15	ENSNVIG00000001101 #18	ENSNVIG00000001052 #18	IBA57 (ENSNVIG00000001008) #19	GJC2 (ENSNVIG00000001001)	GUK1 (ENSNVIG00000000938) #20	MRPL55 (ENSNVIG00000000896) #21	C1orf35 (ENSNVIG00000000876) #22	ARF1 (ENSNVIG00000000852) #23	WNT3A (ENSNVIG00000023755) #24	WNT9A (ENSNVIG00000023751) #25	PRSS38 (ENSNVIG00000023749) #26	SNAP47 (ENSNVIG00000023746) #27	JMJD4 (ENSNVIG00000023741) #28
Ursidae	ANCESTRAL SPECIES	59		ENSGT01030000234553.b.b.d.c.a.d #8	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A.hd ##17	ENSGT00390000006465 #19	ENSGT00940000154756.A.gd.b #18	ENSGT00940000155815 #20	ENSGT00390000010309.a #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Giant Panda	MODERN SPECIES	13				ENSAMEG00000014310 #10	ENSAMEG00000024010	ENSAMEG00000028006 #11	H2BC26 (ENSAMEG00000026668) #12	H2AW (ENSAMEG00000025465) #13	H3-4 (ENSAMEG00000031491) #14	TRIM17 (ENSAMEG00000014312)	ENSAMEG00000023964 #15	ENSAMEG00000023921 #19	ENSAMEG00000016258 #18	ENSAMEG00000016280 #20	ENSAMEG00000016292 #21	C1orf35 (ENSAMEG00000016295) #22	ARF1 (ENSAMEG00000030995) #23	WNT3A (ENSAMEG00000004256) #24	WNT9A (ENSAMEG00000027387) #25	PRSS38 (ENSAMEG00000007189) #26	SNAP47 (ENSAMEG00000009252) #27	JMJD4 (ENSAMEG00000018153) #28	ENSAMEG00000029442	ENSAMEG00000030449 ##7	ENSAMEG00000029726 ##7	OR14C36 (ENSAMEG00000013199)	ENSAMEG00000028922 ##7	ENSAMEG00000019418 ##7	ENSAMEG00000028797	OR2T6 (ENSAMEG00000019566)	OR2T1 (ENSAMEG00000019571)
Ursus	ANCESTRAL SPECIES	192			ENSGT01030000234553.b.b.d.c.a.d #8	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT01020000230360.c.b.a.b.b.d	ENSGT01100000263514.A.f ##14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A.hd ##17	ENSGT00390000006465 #19	ENSGT00940000155815 #20	ENSGT00390000010309.a #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000169575	ENSGT00940000159380 #28
American black bear	MODERN SPECIES	4759													IBA57 (ENSUAMG00000016474) #19	GUK1 (ENSUAMG00000016469) #20	ENSUAMG00000016465 #21	C1orf35 (ENSUAMG00000016462) #22	ARF1 (ENSUAMG00000016459) #23
Canidae	ANCESTRAL SPECIES	64				ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815.c #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT01090000260086.E.b	ENSGT00940000162666	ENSGT01090000259995.b.b.a.a.b.j.b ##7	ENSGT01090000259995.b.b.a.a.b.i.a.a.a.b ##7	ENSGT01090000259995.b.b.a.a.b.j.a ##7	ENSGT01090000259995.b.b.b #7	ENSGT01100000263486.a.b.a.b.b.a.a	ENSGT00940000162246	ENSGT01090000260045.C.e.a.b
Red fox	MODERN SPECIES	291						ENSVVUG00000030366 #9	ENSVVUG00000030367 #9	ENSVVUG00000030369 #11	H2BC26 (ENSVVUG00000030370) #12	H2AC25 (ENSVVUG00000030371) #13	TRIM17 (ENSVVUG00000030372)	TRIM11 (ENSVVUG00000030373) #15	IBA57 (ENSVVUG00000030375) #19	ENSVVUG00000030376	ENSVVUG00000030377 #20	ENSVVUG00000030378 #22	ARF1 (ENSVVUG00000030379)	WNT3A (ENSVVUG00000030380) #24	WNT9A (ENSVVUG00000030381) #25	PRSS38 (ENSVVUG00000030382) #26
Canis_lupus	ANCESTRAL SPECIES	51		ENSGT00940000163997.h #9	ENSGT00940000163997.g #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000160426	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A.fd #17	ENSGT00940000154756.A.ed #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815.c #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.jb #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT01090000260086.E.b	ENSGT00940000162666	ENSGT01090000259995.b.b.a.a.b.j.b ##7	ENSGT00390000000053.t	ENSGT01090000259995.b.b.a.a.b.i.a.a.a.b ##7	ENSGT01090000259995.b.b.a.a.b.j.a ##7	ENSGT01090000259995.b.b.b #7	ENSGT01100000263486.a.b.a.b.b.a.a	ENSGT00940000162246
Dog	MODERN SPECIES	5	ENSCAFG00845006907 #9	ENSCAFG00845006991 #9	ENSCAFG00845007077 #10	ENSCAFG00845007128 #11	H2BC26 (ENSCAFG00845007167) #12	HIST3H2A (ENSCAFG00845007204) #13	TRIM17 (ENSCAFG00845007329) #15	ENSCAFG00845007457 #17	ENSCAFG00845007586 #17	ENSCAFG00845007619 #17	ENSCAFG00845007646 #17	IBA57 (ENSCAFG00845007710) #19	GJC2 (ENSCAFG00845007738)	GUK1 (ENSCAFG00845007785) #20	MRPL55 (ENSCAFG00845007834) #21	C1orf35 (ENSCAFG00845007876) #22	ARF1 (ENSCAFG00845007924) #23	WNT3A (ENSCAFG00845007960) #24	WNT9A (ENSCAFG00845008006) #25	PRSS38 (ENSCAFG00845008050) #26	SNAP47 (ENSCAFG00845008129) #27	JMJD4 (ENSCAFG00845008215) #28	ENSCAFG00845008246	ENSCAFG00845008271	ENSCAFG00845008294 ##7	OR2L3B (ENSCAFG00845008326) ##7	ENSCAFG00845008351	OR2L17 (ENSCAFG00845008368) ##7	OR2L5C (ENSCAFG00845008412) ##7	ENSCAFG00845008436	OR2AJ7 (ENSCAFG00845008461) #7
Dingo	MODERN SPECIES	372	ENSCAFG00020005896 #11	H2BC26 (ENSCAFG00020005888) #12	ENSCAFG00020005861	TRIM17 (ENSCAFG00020005854)	TRIM11 (ENSCAFG00020005850) #15	ENSCAFG00020005824 #17	ENSCAFG00020005817 #17	ENSCAFG00020005814 #17	ENSCAFG00020005812 #17	ENSCAFG00020005800 #17	ENSCAFG00020005782 #17	ENSCAFG00020005770 #17	IBA57 (ENSCAFG00020005762) #19	ENSCAFG00020005747 #20	MRPL55 (ENSCAFG00020005742) #21	ENSCAFG00020005738 #22	ARF1 (ENSCAFG00020005724) #23	WNT3A (ENSCAFG00020005706) #24	WNT9A (ENSCAFG00020005694) #25	PRSS38 (ENSCAFG00020005690) #26	SNAP47 (ENSCAFG00020005687) #27	JMJD4 (ENSCAFG00020005670) #28	ENSCAFG00020005667	OR6F1 (ENSCAFG00020005660)	OR13G1 (ENSCAFG00020005659)	ENSCAFG00020005654 ##7	ENSCAFG00020005648	ENSCAFG00020005647 ##7	ENSCAFG00020005642 ##7	OR2AJ1 (ENSCAFG00020005638) #7	OR2W3 (ENSCAFG00020005631)
Felidae	ANCESTRAL SPECIES	6	ENSGT00940000162415	ENSGT00940000161967	ENSGT01090000259995.a.a.b.a.b.a ##7	ENSGT00940000158017.d	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00530000063632.B	ENSGT00940000162750	ENSGT00940000160338	ENSGT01090000260018.A.a.b.a	ENSGT01090000260018.D.d.a	ENSGT01090000260018.D.d.b	ENSGT01030000234669.A	ENSGT00940000154294.k.a.b	ENSGT00940000154461
Cat	MODERN SPECIES		NLRP3 (ENSFCAG00000009344)	ZNF496 (ENSFCAG00000023658)	ENSFCAG00000027675 ##7	ENSFCAG00000052462 #9	ENSFCAG00000051175	RNF187 (ENSFCAG00000042348) #10	H2BC27P (ENSFCAG00000024427) #11	H2BC26 (ENSFCAG00000032040) #12	H2AC25 (ENSFCAG00000024530) #13	TRIM17 (ENSFCAG00000029709)	TRIM11 (ENSFCAG00000046756) #15	IBA57 (ENSFCAG00000000672) #19	GJC2 (ENSFCAG00000007130)	GUK1 (ENSFCAG00000025872) #20	MRPL55 (ENSFCAG00000015199) #21	CA1H1orf35 (ENSFCAG00000022579) #22	ARF1 (ENSFCAG00000029374) #23	WNT3A (ENSFCAG00000036791) #24	WNT9A (ENSFCAG00000046271) #25	PRSS38 (ENSFCAG00000002338) #26	ENSFCAG00000022992	SNAP47 (ENSFCAG00000015614) #27	JMJD4 (ENSFCAG00000015612) #28	ENSFCAG00000051518	MGAT1 (ENSFCAG00000015344)	ZFP62 (ENSFCAG00000029931)	ENSFCAG00000047273 #8	ENSFCAG00000041675 ##7	ENSFCAG00000046579 ##7	ENSFCAG00000030220	ENSFCAG00000024505
Panthera	ANCESTRAL SPECIES	6	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415	ENSGT00940000161967	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00530000063632.B	ENSGT00940000162750	ENSGT00940000160338	ENSGT01090000260018.A.a.b.a	ENSGT01090000260018.D.d.b	ENSGT01030000234669.A	ENSGT00940000154294.k.a.b	ENSGT00940000154461	ENSGT00940000154294.k.b
Panthera_a	ANCESTRAL SPECIES	3	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415	ENSGT00940000161967	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00530000063632.B	ENSGT00940000162750	ENSGT00940000160338	ENSGT01090000260018.A.a.b.a	ENSGT01090000260018.D.d.b	ENSGT01030000234669.A	ENSGT00940000154294.k.a.b	ENSGT00940000154461	ENSGT00940000154294.k.b
lion	MODERN SPECIES		ZNF496 (ENSPLOG00000000182)	ENSPLOG00000000176	ENSPLOG00000000167 #9	ENSPLOG00000000153 #9	RNF187 (ENSPLOG00000000130) #10	H2BC26 (ENSPLOG00000000122) #12	H2AC25 (ENSPLOG00000000118) #13	TRIM17 (ENSPLOG00000000102)	TRIM11 (ENSPLOG00000000094) #15	ENSPLOG00000000078 #17	ENSPLOG00000000051 #17	IBA57 (ENSPLOG00000000043) #19	GJC2 (ENSPLOG00000000039)	GUK1 (ENSPLOG00000000033) #20	MRPL55 (ENSPLOG00000000024) #21	C1orf35 (ENSPLOG00000000019) #22	ARF1 (ENSPLOG00000000016) #23	WNT3A (ENSPLOG00000000013) #24	WNT9A (ENSPLOG00000000004) #25	PRSS38 (ENSPLOG00000003023) #26	ENSPLOG00000003011	SNAP47 (ENSPLOG00000002987) #27	JMJD4 (ENSPLOG00000002956) #28	MGAT1 (ENSPLOG00000002940)	ZFP62 (ENSPLOG00000002927)	ENSPLOG00000002906	ENSPLOG00000002893	ENSPLOG00000002848	TRIM7 (ENSPLOG00000002799)	TRIM41 (ENSPLOG00000002727)	RACK1 (ENSPLOG00000002660)
leopard	MODERN SPECIES	209								H2BC26 (ENSPPRG00000010835) #12	H2AC25 (ENSPPRG00000010830) #13	TRIM17 (ENSPPRG00000010041)	TRIM11 (ENSPPRG00000010008) #15	IBA57 (ENSPPRG00000005609) #19	GJC2 (ENSPPRG00000010713)	GUK1 (ENSPPRG00000005299) #20	MRPL55 (ENSPPRG00000004595) #21	C1orf35 (ENSPPRG00000004048) #22	ARF1 (ENSPPRG00000003870) #23	ENSPPRG00000022172 #24	WNT3A (ENSPPRG00000003561) #24	WNT9A (ENSPPRG00000003274) #25	PRSS38 (ENSPPRG00000003250) #26	SNAP47 (ENSPPRG00000002689) #27
Laurasiatheria_c	ANCESTRAL SPECIES	29			ENSGT01030000234553.b.b.d.c.a #8	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.b.c.a.a.b.b
Chiroptera	ANCESTRAL SPECIES	75				ENSGT01030000234553.b.b.d.c.a #8	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.b.c.a.a.b.b	ENSGT01090000260045.C.e.a.b	ENSGT00940000162246
Megabat	MODERN SPECIES	1066														IBA57 (ENSPVAG00000007389) #19	ENSPVAG00000007385 #20	C1orf35 (ENSPVAG00000007384) #22	ARF1 (ENSPVAG00000007383) #23
Microchiroptera	ANCESTRAL SPECIES	63				ENSGT01030000234553.b.b.d.c.a #8	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.b.c.a.a.b.b	ENSGT01090000260045.C.e.a.b	ENSGT00940000162246
Microbat	MODERN SPECIES	1315								ENSMLUG00000017530	AFG1L (ENSMLUG00000002580)	ENSMLUG00000002590	ARMC2 (ENSMLUG00000006860)	SESN1 (ENSMLUG00000006886)	CEP57L1 (ENSMLUG00000005850)	ENSMLUG00000003777	CD164 (ENSMLUG00000003783)	ENSMLUG00000023748 #22	PPIL6 (ENSMLUG00000003789)	SMPD2 (ENSMLUG00000003793)	MICAL1 (ENSMLUG00000003799)	ENSMLUG00000029807	ZBTB24 (ENSMLUG00000029884)	ENSMLUG00000003816
Greater horseshoe bat	MODERN SPECIES	16	NLRP3 (ENSRFEG00010011921)	ENSRFEG00010012199	ZNF496 (ENSRFEG00010012279)	ENSRFEG00010012356 #8	ENSRFEG00010012392 #9	RNF187 (ENSRFEG00010012412) #10	H2AC25 (ENSRFEG00010012511) #13	H3-4 (ENSRFEG00010012529) #14	TRIM17 (ENSRFEG00010012551)	TRIM11 (ENSRFEG00010012738) #15	OBSCN (ENSRFEG00010012968) #17	IBA57 (ENSRFEG00010020284) #19	GJC2 (ENSRFEG00010020305)	ENSRFEG00010020344 #20	MRPL55 (ENSRFEG00010020427) #21	ENSRFEG00010020459 #22	ENSRFEG00010020502 #23	WNT3A (ENSRFEG00010020529) #24	WNT9A (ENSRFEG00010020564) #25	PRSS38 (ENSRFEG00010020586) #26	SNAP47 (ENSRFEG00010020620) #27	JMJD4 (ENSRFEG00010020639) #28	ENSRFEG00010020667	ZFP2 (ENSRFEG00010020696)	ZNF454 (ENSRFEG00010020708)	GRM6 (ENSRFEG00010020725)	ZNF879 (ENSRFEG00010020752)	ZNF354C (ENSRFEG00010020767)	ADAMTS2 (ENSRFEG00010020822)	ENSRFEG00010020942	ENSRFEG00010020957
Equus	ANCESTRAL SPECIES	6	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000162415	ENSGT00940000161967	ENSGT01030000234553.b.b.d.d ##8	ENSGT00940000163997.m #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Donkey	MODERN SPECIES	29	ENSEASG00005017964	ENSEASG00005017951 ##8	ENSEASG00005035367 #9	ENSEASG00005024868 #9	ENSEASG00005017961 #10	ENSEASG00005029469	H2BC26 (ENSEASG00005026831) #12	ENSEASG00005035131	TRIM17 (ENSEASG00005017955)	TRIM11 (ENSEASG00005017954) #15	OBSCN (ENSEASG00005017625) #17	ENSEASG00005033564 #19	GJC2 (ENSEASG00005017541)	GUK1 (ENSEASG00005017539) #20	MRPL55 (ENSEASG00005024877) #21	C1orf35 (ENSEASG00005017537) #22	ENSEASG00005036953	WNT3A (ENSEASG00005010564) #24	WNT9A (ENSEASG00005017530) #25	PRSS38 (ENSEASG00005017526) #26	ENSEASG00005023983	SNAP47 (ENSEASG00005017519) #27	JMJD4 (ENSEASG00005017516) #28
Horse	MODERN SPECIES	5	OR2W29 (ENSECAG00000001770)	OR2B11 (ENSECAG00000002900)	NLRP3 (ENSECAG00000015382)	ZNF496 (ENSECAG00000015844)	ENSECAG00000033206 ##8	ENSECAG00000032464 #9	ENSECAG00000040368 #9	RNF187 (ENSECAG00000016200) #10	H2BC26 (ENSECAG00000048080) #12	ENSECAG00000059949 #11	TRIM17 (ENSECAG00000039891)	TRIM11 (ENSECAG00000016373) #15	OBSCN (ENSECAG00000016720) #17	IBA57 (ENSECAG00000006335) #19	GJC2 (ENSECAG00000037673)	ENSECAG00000059239 #22	GUK1 (ENSECAG00000019280) #20	ARF1 (ENSECAG00000032327) #23	WNT3A (ENSECAG00000028812) #24	WNT9A (ENSECAG00000020178) #25	PRSS38 (ENSECAG00000020942) #26	SNAP47 (ENSECAG00000020954) #27	JMJD4 (ENSECAG00000021407) #28
Artiodactyla	ANCESTRAL SPECIES	31				ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Suina	ANCESTRAL SPECIES	56	ENSGT01100000263521.a.a.b.a.b.b	ENSGT00940000161175	ENSGT00940000163610	ENSGT00940000162327	ENSGT00390000006465 #19	ENSGT00940000154756.A #17	ENSGT00940000160371 #15	ENSGT00940000162155	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00390000009510 #10	ENSGT00940000163997 #9	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Chacoan peccary	MODERN SPECIES	953	ZNF692 (ENSCWAG00000008595)	ENSCWAG00000008433	PGBD2 (ENSCWAG00000008376)	ENSCWAG00000020908	ENSCWAG00000020902 #9	RNF187 (ENSCWAG00000020893) #10	H2BC26 (ENSCWAG00000020885) #12	H2AC25 (ENSCWAG00000020876) #13	TRIM17 (ENSCWAG00000020852)	TRIM11 (ENSCWAG00000020837) #15	OBSCN (ENSCWAG00000020667) #17	IBA57 (ENSCWAG00000020636) #19	GJC2 (ENSCWAG00000020627)	GUK1 (ENSCWAG00000020604) #20	MRPL55 (ENSCWAG00000020597) #21	C1orf35 (ENSCWAG00000020590) #22	ARF1 (ENSCWAG00000020582) #23	WNT3A (ENSCWAG00000020576) #24	WNT9A (ENSCWAG00000020570) #25	PRSS38 (ENSCWAG00000020558) #26	SNAP47 (ENSCWAG00000020551) #27	JMJD4 (ENSCWAG00000020541) #28	OR4A16 (ENSCWAG00000020533)	ENSCWAG00000020519	ENSCWAG00000020508	SHANK3 (ENSCWAG00000020472)	ARSA (ENSCWAG00000020433)	MAPK8IP2 (ENSCWAG00000020407)	CHKB (ENSCWAG00000020388)	CPT1B (ENSCWAG00000020353)	SYCE3 (ENSCWAG00000020334)
Pig	MODERN SPECIES	10	ENSSSCG00000013976	PGBD2 (ENSSSCG00000033305)	ENSSSCG00000039611	ENSSSCG00000013980 ##7	ENSSSCG00000026598 ##7	ENSSSCG00000059454 #8	TRIM11 (ENSSSCG00000035985) #15	TRIM17 (ENSSSCG00000014000)	H2AC25 (ENSSSCG00000047900) #13	H2BC26 (ENSSSCG00000061158) #12	RNF187 (ENSSSCG00000032994) #10	OBSCN (ENSSSCG00000034569) #17	GJC2 (ENSSSCG00000013989)	ENSSSCG00000013990 #20	MRPL55 (ENSSSCG00000029050) #21	C1orf35 (ENSSSCG00000013991) #22	ARF1 (ENSSSCG00000013992) #23	WNT3A (ENSSSCG00000029870) #24	WNT9A (ENSSSCG00000024671) #25	ENSSSCG00000048546	ENSSSCG00000057198	SNAP47 (ENSSSCG00000013984) #27	JMJD4 (ENSSSCG00000013983) #28	ENSSSCG00000036276	ENSSSCG00000014467	ENSSSCG00000040165	ENSSSCG00000032924	ENSSSCG00000042508	ENSSSCG00000038176	ENSSSCG00000043165	WEE1 (ENSSSCG00000013411)
Artiodactyla_a	ANCESTRAL SPECIES	7					ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570	ENSGT00940000162743	ENSGT00940000162181	ENSGT01030000234648.a.b.a.b	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.a.a
Artiodactyla_b	ANCESTRAL SPECIES	8				ENSGT00940000154756.A.kd.a #17	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A.ld #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570	ENSGT00940000162743	ENSGT00940000162181	ENSGT01030000234648.a.b.a.b	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.a.a
Pecora	ANCESTRAL SPECIES		ENSGT00940000162816	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A.ld #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000009280	ENSCHYG00000009333	RNF187 (ENSCHYG00000009353) #10	ENSCHYG00000009390 #11	H2AC25 (ENSCHYG00000009419) #13	H3-4 (ENSCHYG00000009438) #14	TRIM17 (ENSCHYG00000009461)	TRIM11 (ENSCHYG00000009542) #15	ENSCHYG00000009620 #17	ENSCHYG00000009774 #17	ENSCHYG00000009985	IBA57 (ENSCHYG00000010014) #19	GJC2 (ENSCHYG00000010036)	GUK1 (ENSCHYG00000010059) #20	MRPL55 (ENSCHYG00000010212) #21	C1orf35 (ENSCHYG00000010289) #22	ENSCHYG00000010399 #23	WNT3A (ENSCHYG00000010445) #24	WNT9A (ENSCHYG00000010511) #25	PRSS38 (ENSCHYG00000010560) #26	SNAP47 (ENSCHYG00000010619) #27	JMJD4 (ENSCHYG00000010663) #28	ENSCHYG00000010707	ZNF354B (ENSCHYG00000010723)	ENSCHYG00000010766	ATP13A1 (ENSCHYG00000010816)	GMIP (ENSCHYG00000011272)	LPAR2 (ENSCHYG00000011542)	PBX4 (ENSCHYG00000011654)	CILP2 (ENSCHYG00000012104)	YJEFN3 (ENSCHYG00000012151)
Percora_a	ANCESTRAL SPECIES		ENSGT00940000162816	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A.ld #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Bovidae	ANCESTRAL SPECIES		ENSGT00940000162181	ENSGT00940000162743	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A.ld #17	ENSGT00940000154756.A.kd.b #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Bovinae	ANCESTRAL SPECIES	34	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00940000162743	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A.kd.b.a.a #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Bos	ANCESTRAL SPECIES	34	ENSGT00940000162181	ENSGT00940000162743	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00390000009312.n.b	ENSGT00940000154756.A.kd.b.a.a.b #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Bos_a	ANCESTRAL SPECIES	29	ENSGT00940000162181	ENSGT00940000162743	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00390000009312.n.b	ENSGT00940000154756.A.kd.b.a.a.a #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a
Domestic yak	MODERN SPECIES	27	ZNF354C (ENSBGRG00000003526)	GRM6 (ENSBGRG00000003481)	ZNF454 (ENSBGRG00000003460)	ENSBGRG00000003452	RNF187 (ENSBGRG00000003438) #10	H2AC25 (ENSBGRG00000003429) #13	H3-4 (ENSBGRG00000003421) #14	ENSBGRG00000003415	TRIM17 (ENSBGRG00000003402)	TRIM11 (ENSBGRG00000003387) #15	ENSBGRG00000003375	IBA57 (ENSBGRG00000003172) #19	GJC2 (ENSBGRG00000003164)	GUK1 (ENSBGRG00000003137) #20	MRPL55 (ENSBGRG00000003109) #21	C1orf35 (ENSBGRG00000003092) #22	ARF1 (ENSBGRG00000003083) #23	WNT3A (ENSBGRG00000003066) #24	ENSBGRG00000003044	WNT9A (ENSBGRG00000003023) #25	PRSS38 (ENSBGRG00000002987) #26	SNAP47 (ENSBGRG00000002943) #27	JMJD4 (ENSBGRG00000002925) #28	ZNF354B (ENSBGRG00000002905)	ENSBGRG00000002896	ATP13A1 (ENSBGRG00000002465)	GMIP (ENSBGRG00000002278)	LPAR2 (ENSBGRG00000002227)	PBX4 (ENSBGRG00000002159)	CILP2 (ENSBGRG00000002130)	YJEFN3 (ENSBGRG00000002015)
Wild yak	MODERN SPECIES	610									ENSBMUG00000013557 #17	ENSBMUG00000013541 #17	ENSBMUG00000013430 #17	IBA57 (ENSBMUG00000013400) #19	GJC2 (ENSBMUG00000013389)	GUK1 (ENSBMUG00000013370) #20	MRPL55 (ENSBMUG00000013341) #21	C1orf35 (ENSBMUG00000013244) #22	ARF1 (ENSBMUG00000013231) #23	WNT3A (ENSBMUG00000013208) #24	WNT9A (ENSBMUG00000013188) #25	PRSS38 (ENSBMUG00000013170) #26	SNAP47 (ENSBMUG00000013160) #27	JMJD4 (ENSBMUG00000013129) #28	ZNF354B (ENSBMUG00000013110)
Bos_b	ANCESTRAL SPECIES	36	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00940000162743	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00390000009312.n.b	ENSGT00940000154756.A.kd.b.a.a.b #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Cow	MODERN SPECIES	26	ENSBTAG00000052690	RNF187 (ENSBTAG00000019667) #10	H2BC26 (ENSBTAG00000053467) #12	H2AC25 (ENSBTAG00000037964) #13	H3-4 (ENSBTAG00000055153) #14	TRIM17 (ENSBTAG00000018673)	TRIM11 (ENSBTAG00000039246) #15	ENSBTAG00000007820	ENSBTAG00000040028 #17	ENSBTAG00000051744 #17	ENSBTAG00000049190 #17	IBA57 (ENSBTAG00000014918) #19	GJC2 (ENSBTAG00000014916)	GUK1 (ENSBTAG00000014775) #20	MRPL55 (ENSBTAG00000020721) #21	C7H1orf35 (ENSBTAG00000020720) #22	ARF1 (ENSBTAG00000007725) #23	WNT3A (ENSBTAG00000039397) #24	WNT9A (ENSBTAG00000020267) #25	PRSS38 (ENSBTAG00000013977) #26	SNAP47 (ENSBTAG00000004188) #27	JMJD4 (ENSBTAG00000004191) #28	ZNF354B (ENSBTAG00000017123)	ENSBTAG00000052161	ATP13A1 (ENSBTAG00000007128)	GMIP (ENSBTAG00000015144)	LPAR2 (ENSBTAG00000004652)	PBX4 (ENSBTAG00000009975)	CILP2 (ENSBTAG00000014969)	YJEFN3 (ENSBTAG00000014968)	NDUFA13 (ENSBTAG00000007812)
Hybrid Bos Indicus	MODERN SPECIES	26	GRM6 (ENSBIXG00005029370)	ZNF454 (ENSBIXG00005029356)	RNF187 (ENSBIXG00005029336) #10	H2BC26 (ENSBIXG00005029334) #12	H2AC25 (ENSBIXG00005029330) #13	ENSBIXG00005029327	H3-4 (ENSBIXG00005029320) #14	TRIM17 (ENSBIXG00005029306)	TRIM11 (ENSBIXG00005029289) #15	ENSBIXG00005029278	OBSCN (ENSBIXG00005010529) #17	ENSBIXG00005010951	IBA57 (ENSBIXG00005010975) #19	GUK1 (ENSBIXG00005011045) #20	MRPL55 (ENSBIXG00005011160) #21	C1orf35 (ENSBIXG00005001035) #22	ARF1 (ENSBIXG00005011212) #23	WNT3A (ENSBIXG00005011222) #24	WNT9A (ENSBIXG00005006783) #25	PRSS38 (ENSBIXG00005011238) #26	ENSBIXG00005011249	ENSBIXG00005001061	ENSBIXG00005011259	SNAP47 (ENSBIXG00005011285) #27	JMJD4 (ENSBIXG00005005916) #28	ENSBIXG00005000504	ZNF354B (ENSBIXG00005011307)	ENSBIXG00005011324	ATP13A1 (ENSBIXG00005011383)	GMIP (ENSBIXG00005011455)	LPAR2 (ENSBIXG00005011498)
American bison	MODERN SPECIES	3165				H3-4 (ENSBBBG00000004059) #14	TRIM17 (ENSBBBG00000016399)	TRIM11 (ENSBBBG00000016378) #15	ENSBBBG00000016369 #17	ENSBBBG00000016357 #17	ENSBBBG00000016350 #17	ENSBBBG00000016344 #17	ENSBBBG00000016327 #17	ENSBBBG00000016321	IBA57 (ENSBBBG00000016303) #19	GUK1 (ENSBBBG00000004041) #20	MRPL55 (ENSBBBG00000004037) #21	C1orf35 (ENSBBBG00000016183) #22	ARF1 (ENSBBBG00000016170) #23	WNT3A (ENSBBBG00000016145) #24	WNT9A (ENSBBBG00000016116) #25	PRSS38 (ENSBBBG00000016108) #26	SNAP47 (ENSBBBG00000007139) #27	JMJD4 (ENSBBBG00000016083) #28	ZNF354B (ENSBBBG00000016063)	ENSBBBG00000016056	ATP13A1 (ENSBBBG00000003990)	GMIP (ENSBBBG00000016022)	LPAR2 (ENSBBBG00000015996)	PBX4 (ENSBBBG00000015984)	CILP2 (ENSBBBG00000015975)	YJEFN3 (ENSBBBG00000015957)	NDUFA13 (ENSBBBG00000015950)
Caprinae	ANCESTRAL SPECIES	32	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00940000162743	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A.ld #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Goat	MODERN SPECIES	26	GRM6 (ENSCHIG00000024892)	ZNF454 (ENSCHIG00000013008)	ZFP2 (ENSCHIG00000010314)	ENSCHIG00000025835	RNF187 (ENSCHIG00000012732) #10	H2BC26 (ENSCHIG00000009284) #12	H2AC25 (ENSCHIG00000006649) #13	H3-4 (ENSCHIG00000008243) #14	TRIM17 (ENSCHIG00000017072)	TRIM11 (ENSCHIG00000010660) #15	OBSCN (ENSCHIG00000026141) #17	IBA57 (ENSCHIG00000025813) #19	GJC2 (ENSCHIG00000012045)	GUK1 (ENSCHIG00000020301) #20	MRPL55 (ENSCHIG00000024153) #21	C1orf35 (ENSCHIG00000020666) #22	ARF1 (ENSCHIG00000010924) #23	WNT3A (ENSCHIG00000016159) #24	WNT9A (ENSCHIG00000009523) #25	ENSCHIG00000004906	SNAP47 (ENSCHIG00000025042) #27	JMJD4 (ENSCHIG00000001908) #28	ZNF354B (ENSCHIG00000024384)	ENSCHIG00000027175	ATP13A1 (ENSCHIG00000027146)	GMIP (ENSCHIG00000006935)	LPAR2 (ENSCHIG00000026267)	PBX4 (ENSCHIG00000020490)	CILP2 (ENSCHIG00000016599)	YJEFN3 (ENSCHIG00000022695)	NDUFA13 (ENSCHIG00000005106)
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020016295 #17	ZNF354C (ENSOARG00020016338)	GRM6 (ENSOARG00020016554)	ZNF454 (ENSOARG00020016811)	ZFP2 (ENSOARG00020016872)	RNF187 (ENSOARG00020016886) #10	HIST3H2BB (ENSOARG00020016921) #12	H2AC25 (ENSOARG00020016951) #13	H3-4 (ENSOARG00020016979) #14	TRIM17 (ENSOARG00020017007)	TRIM11 (ENSOARG00020017090) #15	IBA57 (ENSOARG00020018299) #19	GJC2 (ENSOARG00020018337)	GUK1 (ENSOARG00020018354) #20	MRPL55 (ENSOARG00020018459) #21	C1orf35 (ENSOARG00020018506) #22	ARF1 (ENSOARG00020018572) #23	WNT3A (ENSOARG00020018613) #24	ENSOARG00020018666	WNT9A (ENSOARG00020018708) #25	PRSS38 (ENSOARG00020018766) #26	SNAP47 (ENSOARG00020018819) #27	ZNF354B (ENSOARG00020018905)	ENSOARG00020018960	ATP13A1 (ENSOARG00020019002)	GMIP (ENSOARG00020019185)	LPAR2 (ENSOARG00020019376)	CILP2 (ENSOARG00020019527)	YJEFN3 (ENSOARG00020019633)	NDUFA13 (ENSOARG00020019709)	TSSK6 (ENSOARG00020019749)
Siberian musk deer	MODERN SPECIES	1213	ZNF354C (ENSMMSG00000024233)	ZNF879 (ENSMMSG00000019906)	GRM6 (ENSMMSG00000019933)	ZNF454 (ENSMMSG00000019980)	RNF187 (ENSMMSG00000020017) #10	H2BC26 (ENSMMSG00000020045) #12	H2AC25 (ENSMMSG00000020054) #13	H3-4 (ENSMMSG00000020062) #14	TRIM17 (ENSMMSG00000020070)	TRIM11 (ENSMMSG00000020106) #15	OBSCN (ENSMMSG00000020369) #17	IBA57 (ENSMMSG00000022482) #19	GJC2 (ENSMMSG00000022491)	GUK1 (ENSMMSG00000022498) #20	MRPL55 (ENSMMSG00000022520) #21	C1orf35 (ENSMMSG00000022529) #22	ARF1 (ENSMMSG00000022533) #23	WNT3A (ENSMMSG00000022541) #24	WNT9A (ENSMMSG00000022550) #25	PRSS38 (ENSMMSG00000022575) #26	ENSMMSG00000022591	SNAP47 (ENSMMSG00000022600) #27	JMJD4 (ENSMMSG00000022617) #28	ZNF354B (ENSMMSG00000022631)	ENSMMSG00000022637
Cetacea	ANCESTRAL SPECIES	1	ENSGT00570000079564	ENSGT00390000018500.a	ENSGT01100000263552.g.b.a.a	ENSGT00940000161175	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.a ##7	ENSGT00940000160371 #15	ENSGT00940000162155	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00390000009510 #10	ENSGT00940000154756.A.kd.a #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570	ENSGT00940000162743	ENSGT00940000162181	ENSGT01030000234648.a.b.a.b	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.a.a
Blue whale	MODERN SPECIES	14	PGBD2 (ENSBMSG00010000226)	ENSBMSG00010000207 ##7	ENSBMSG00010000187	ENSBMSG00010000168 #9	TRIM11 (ENSBMSG00010000144) #15	H2AC25 (ENSBMSG00010000131) #13	H2BC26 (ENSBMSG00010000114) #12	RNF187 (ENSBMSG00010000103) #10	ENSBMSG00010000077 #17	ENSBMSG00010008882 #17	ENSBMSG00010008859	IBA57 (ENSBMSG00010008847) #19	GJC2 (ENSBMSG00010008838)	GUK1 (ENSBMSG00010008805) #20	ENSBMSG00010008778 #21	C1orf35 (ENSBMSG00010008763) #22	ENSBMSG00010008747 #23	WNT3A (ENSBMSG00010008734) #24	WNT9A (ENSBMSG00010008726) #25	PRSS38 (ENSBMSG00010008714) #26	SNAP47 (ENSBMSG00010008703) #27	JMJD4 (ENSBMSG00010008694) #28	ZNF354B (ENSBMSG00010008689)	ZFP2 (ENSBMSG00010008682)	ZNF454 (ENSBMSG00010008671)	GRM6 (ENSBMSG00010008657)	ZNF879 (ENSBMSG00010008639)	ENSBMSG00010008598	ENSBMSG00010008587	ENSBMSG00010008570	RUFY1 (ENSBMSG00010008550)
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.a ##7	ENSGT00940000160371 #15	ENSGT00940000162155	ENSGT01100000263514.A.e.a.a.u.b ##14	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00390000009510 #10	ENSGT00940000154756.A.ld #17	ENSGT00550000074800.x	ENSGT00990000211596	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570	ENSGT00940000162743	ENSGT00940000162181	ENSGT01030000234648.a.b.a.b	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.a.a
Sperm whale	MODERN SPECIES	11	ENSPCTG00005001917	TRIM11 (ENSPCTG00005001906) #15	ENSPCTG00005001893 ##14	H2AC25 (ENSPCTG00005001884) #13	H2BC26 (ENSPCTG00005001875) #12	RNF187 (ENSPCTG00005001868) #10	ENSPCTG00005001857 #17	ENSPCTG00005001845 #17	ENSPCTG00005001837 #17	ENSPCTG00005001826	ENSPCTG00005001819	IBA57 (ENSPCTG00005001814) #19	GJC2 (ENSPCTG00005001808)	GUK1 (ENSPCTG00005001793) #20	ENSPCTG00005001780 #21	C1orf35 (ENSPCTG00005001766) #22	ARF1 (ENSPCTG00005001753) #23	WNT3A (ENSPCTG00005001738) #24	WNT9A (ENSPCTG00005001728) #25	PRSS38 (ENSPCTG00005001709) #26	SNAP47 (ENSPCTG00005001687) #27	JMJD4 (ENSPCTG00005001672) #28	ZNF354B (ENSPCTG00005001661)	ZFP2 (ENSPCTG00005001642)	ZNF454 (ENSPCTG00005001630)	GRM6 (ENSPCTG00005001608)	ENSPCTG00005001587	ZNF879 (ENSPCTG00005001578)	ZNF354C (ENSPCTG00005001563)	ADAMTS2 (ENSPCTG00005001538)	ENSPCTG00005001527
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.a ##7	ENSGT00940000160371 #15	ENSGT00940000162155	ENSGT01100000263514.A.e.a.a.u.b ##14	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00390000009510 #10	ENSGT00940000154756.A.ld #17	ENSGT00550000074800.x	ENSGT00990000211596	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570	ENSGT00940000162743	ENSGT00940000162181	ENSGT01030000234648.a.b.a.b	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.a.a
Dolphin	MODERN SPECIES	784														ENSTTRG00000014194 #20	ENSTTRG00000014191	C1orf35 (ENSTTRG00000014189) #22	ARF1 (ENSTTRG00000014186) #23
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.a ##7	ENSGT00940000160371 #15	ENSGT00940000162155	ENSGT01100000263514.A.e.a.a.u.b ##14	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00390000009510 #10	ENSGT00940000154756.A.ld #17	ENSGT00550000074800.x	ENSGT00990000211596	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570	ENSGT00940000162743	ENSGT00940000162181	ENSGT01030000234648.a.b.a.b	ENSGT00940000155143.mb.b.a	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334
Vaquita	MODERN SPECIES	14	PGBD2 (ENSPSNG00000003638)	ENSPSNG00000003658 ##7	TRIM11 (ENSPSNG00000003681) #15	TRIM17 (ENSPSNG00000003706)	ENSPSNG00000003725 ##14	H2AC25 (ENSPSNG00000003735) #13	H2BC26 (ENSPSNG00000003742) #12	RNF187 (ENSPSNG00000003755) #10	ENSPSNG00000003780 #17	ENSPSNG00000003825 #17	ENSPSNG00000003866	IBA57 (ENSPSNG00000007499) #19	GJC2 (ENSPSNG00000007534)	GUK1 (ENSPSNG00000007583) #20	MRPL55 (ENSPSNG00000007632) #21	C1orf35 (ENSPSNG00000007656) #22	ENSPSNG00000007683 #23	WNT3A (ENSPSNG00000007708) #24	WNT9A (ENSPSNG00000007743) #25	PRSS38 (ENSPSNG00000007771) #26	SNAP47 (ENSPSNG00000007830) #27	JMJD4 (ENSPSNG00000007858) #28	ZNF354B (ENSPSNG00000007886)	ZFP2 (ENSPSNG00000007917)	ZNF454 (ENSPSNG00000007949)	GRM6 (ENSPSNG00000007996)	ENSPSNG00000008070	ZNF879 (ENSPSNG00000008106)	ADAMTS2 (ENSPSNG00000008224)	RUFY1 (ENSPSNG00000008611)	ENSPSNG00000008738
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00940000161175	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.a ##7	ENSGT00940000160371 #15	ENSGT00940000162155	ENSGT01100000263514.A.e.a.a.u.b ##14	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00390000009510 #10	ENSGT00550000074800.x	ENSGT00990000211596	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570	ENSGT00940000162743	ENSGT00940000162181	ENSGT01030000234648.a.b.a.b	ENSGT00940000155143.mb.b.a	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334
Narwhal	MODERN SPECIES	298	ZNF692 (ENSMMNG00015000156)	PGBD2 (ENSMMNG00015000125)	ENSMMNG00015000101 ##7	TRIM11 (ENSMMNG00015000075) #15	TRIM17 (ENSMMNG00015000054)	ENSMMNG00015000023 ##14	H2AC25 (ENSMMNG00015000012) #13	H2BC26 (ENSMMNG00015004531) #12	RNF187 (ENSMMNG00015004520) #10	ENSMMNG00015003699	ENSMMNG00015003686	IBA57 (ENSMMNG00015003669) #19	GJC2 (ENSMMNG00015003654)	GUK1 (ENSMMNG00015003608) #20	MRPL55 (ENSMMNG00015003572) #21	C1orf35 (ENSMMNG00015003552) #22	ENSMMNG00015003538 #23	WNT3A (ENSMMNG00015003522) #24	WNT9A (ENSMMNG00015003510) #25	PRSS38 (ENSMMNG00015003487) #26	ENSMMNG00015003473	SNAP47 (ENSMMNG00015003455) #27	JMJD4 (ENSMMNG00015003436) #28	ZNF354B (ENSMMNG00015003424)	ZFP2 (ENSMMNG00015003397)	ZNF454 (ENSMMNG00015003376)	GRM6 (ENSMMNG00015003345)	ENSMMNG00015003325	ZNF879 (ENSMMNG00015003310)	ZNF354C (ENSMMNG00015003290)	ENSMMNG00015003278
Beluga whale	MODERN SPECIES	93	ZNF692 (ENSDLEG00000010201)	PGBD2 (ENSDLEG00000010227)	ENSDLEG00000010241 ##7	TRIM11 (ENSDLEG00000010252) #15	TRIM17 (ENSDLEG00000010270)	ENSDLEG00000010292 ##14	H2AC25 (ENSDLEG00000010298) #13	H2BC26 (ENSDLEG00000010308) #12	RNF187 (ENSDLEG00000010320) #10	ENSDLEG00000011998	ENSDLEG00000012007	IBA57 (ENSDLEG00000012021) #19	GJC2 (ENSDLEG00000012033)	GUK1 (ENSDLEG00000012045) #20	MRPL55 (ENSDLEG00000012111) #21	ENSDLEG00000012123 #22	ENSDLEG00000012142	WNT3A (ENSDLEG00000012150) #24	WNT9A (ENSDLEG00000012170) #25	PRSS38 (ENSDLEG00000012200) #26	SNAP47 (ENSDLEG00000012222) #27	JMJD4 (ENSDLEG00000012232) #28	ZNF354B (ENSDLEG00000012249)	ZFP2 (ENSDLEG00000012263)	ZNF454 (ENSDLEG00000012270)	GRM6 (ENSDLEG00000012287)	ENSDLEG00000012347	ZNF879 (ENSDLEG00000012354)	ZNF354C (ENSDLEG00000012363)	ADAMTS2 (ENSDLEG00000012411)	ENSDLEG00000012767
Eulipotyphla	ANCESTRAL SPECIES	2229																ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23
Hedgehog	MODERN SPECIES	8406																C1orf35 (ENSEEUG00000004717) #22	ARF1 (ENSEEUG00000004638) #23
Euarchontoglires	ANCESTRAL SPECIES	25			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.b	ENSGT01100000263486.a.b.a.b.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.a
Euarchontoglires_A	ANCESTRAL SPECIES	28			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.a.b	ENSGT01060000248581.C.a.a
Glires	ANCESTRAL SPECIES	29			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.a.b	ENSGT01060000248581.C.a.a
Rodentia	ANCESTRAL SPECIES	7			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b
Rodentia_B	ANCESTRAL SPECIES	46	ENSGT00940000162246	ENSGT00940000160177	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b
Myomorpha	ANCESTRAL SPECIES	28	ENSGT00390000006224	ENSGT00940000160177	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b
Muroidea	ANCESTRAL SPECIES	10	ENSGT00390000006224	ENSGT00940000160177	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT00940000155286	ENSGT00390000004368
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT00940000155286	ENSGT00390000004368
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b
Prairie vole	MODERN SPECIES	15	ENSMOCG00000003250	Zfp39 (ENSMOCG00000017961)	Btnl10 (ENSMOCG00000005486) #9	Rnf187 (ENSMOCG00000021645)	H2bc27 (ENSMOCG00000002061) #11	H2bc26-ps (ENSMOCG00000003080) #12	H2ac25 (ENSMOCG00000002942) #13	H3f4 (ENSMOCG00000002973) #14	Trim17 (ENSMOCG00000016644)	Trim11 (ENSMOCG00000021941) #15	Obscn (ENSMOCG00000009245) #17	Iba57 (ENSMOCG00000019048) #19	Gjc2 (ENSMOCG00000015445)	Guk1 (ENSMOCG00000020868) #20	Mrpl55 (ENSMOCG00000022355) #21	2310033P09Rik (ENSMOCG00000020633) #22	Arf1 (ENSMOCG00000005344) #23	Wnt3a (ENSMOCG00000022805) #24	Wnt9a (ENSMOCG00000022972) #25	Prss38 (ENSMOCG00000020492) #26	Snap47 (ENSMOCG00000021698) #27	Jmjd4 (ENSMOCG00000019517) #28	Zfp867 (ENSMOCG00000017475)	Zkscan17 (ENSMOCG00000021773)	ENSMOCG00000007500	ENSMOCG00000004021	Nlrp3 (ENSMOCG00000022962)	Or2b11 (ENSMOCG00000002219)	Or2w25 (ENSMOCG00000002703)	ENSMOCG00000002772	ENSMOCG00000020749
Northern American deer mouse	MODERN SPECIES	21	2810021J22Rik (ENSPEMG00000028205)	Zfp39 (ENSPEMG00000009428)	Btnl10 (ENSPEMG00000010544) #9	ENSPEMG00000024885 #10	H2bc27 (ENSPEMG00000029370) #11	H2bc26-ps (ENSPEMG00000029564) #12	H2ac25 (ENSPEMG00000025825) #13	H3f4 (ENSPEMG00000028465) #14	Trim17 (ENSPEMG00000012957)	Trim11 (ENSPEMG00000013300) #15	Obscn (ENSPEMG00000017360) #17	Iba57 (ENSPEMG00000029448) #19	Gjc2 (ENSPEMG00000015748)	Guk1 (ENSPEMG00000007733) #20	Mrpl55 (ENSPEMG00000010381) #21	2310033P09Rik (ENSPEMG00000016726) #22	Arf1 (ENSPEMG00000024884) #23	Wnt3a (ENSPEMG00000014970) #24	Wnt9a (ENSPEMG00000008917) #25	ENSPEMG00000026476	Prss38 (ENSPEMG00000000315) #26	Snap47 (ENSPEMG00000003186) #27	Jmjd4 (ENSPEMG00000025158) #28	Zfp867 (ENSPEMG00000015201)	Zkscan17 (ENSPEMG00000028678)	Nlrp3 (ENSPEMG00000018349)	Or2b11 (ENSPEMG00000027692)	ENSPEMG00000027834	Mprip (ENSPEMG00000005808)	Pld6 (ENSPEMG00000002262)	Flcn (ENSPEMG00000001290)
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT00940000155286	ENSGT00390000004368
Golden Hamster	MODERN SPECIES	627	Zfp39 (ENSMAUG00000001536)	Btnl10 (ENSMAUG00000021399) #9	ENSMAUG00000020727	ENSMAUG00000021471 #10	H2bc27 (ENSMAUG00000010540) #11	H2bc26-ps (ENSMAUG00000010794) #12	H2ac25 (ENSMAUG00000010628) #13	ENSMAUG00000010470	H3f4 (ENSMAUG00000010700) #14	Trim17 (ENSMAUG00000004817)	Trim11 (ENSMAUG00000001510) #15	Obscn (ENSMAUG00000022279) #17	Iba57 (ENSMAUG00000020575) #19	Gjc2 (ENSMAUG00000020150)	Guk1 (ENSMAUG00000022283) #20	2310033P09Rik (ENSMAUG00000019958) #22	ENSMAUG00000022253 #23	Wnt3a (ENSMAUG00000021475) #24	Wnt9a (ENSMAUG00000021643) #25	Prss38 (ENSMAUG00000019978) #26	Snap47 (ENSMAUG00000020014) #27	Jmjd4 (ENSMAUG00000017265) #28	ENSMAUG00000019046	Zkscan17 (ENSMAUG00000016630)	ENSMAUG00000017910	ENSMAUG00000006329	Nlrp3 (ENSMAUG00000020051)	Or2b11 (ENSMAUG00000010476)	Or2w25 (ENSMAUG00000020886)	ENSMAUG00000015837	Pld6 (ENSMAUG00000013977)
Chinese hamster chok1gshd	MODERN SPECIES	229	2810021J22Rik (ENSCGRG00001001041)	Zfp39 (ENSCGRG00001002406)	ENSCGRG00001015992	ENSCGRG00001017170 #10	H2ac25 (ENSCGRG00001008750) #13	H2bc26-ps (ENSCGRG00001013795) #12	H2bc27 (ENSCGRG00001005703) #11	ENSCGRG00001009610 #14	Trim17 (ENSCGRG00001017038)	Trim11 (ENSCGRG00001016227) #15	Obscn (ENSCGRG00001023809) #17	Iba57 (ENSCGRG00001007484) #19	Gjc2 (ENSCGRG00001008796)	ENSCGRG00001016847 #20	Mrpl55 (ENSCGRG00001020506) #21	2310033P09Rik (ENSCGRG00001021154) #22	Arf1 (ENSCGRG00001013922) #23	Wnt3a (ENSCGRG00001015217) #24	Wnt9a (ENSCGRG00001016816) #25	Prss38 (ENSCGRG00001019522) #26	Snap47 (ENSCGRG00001004500) #27	Jmjd4 (ENSCGRG00001013252) #28	Zfp867 (ENSCGRG00001016010)	Zkscan17 (ENSCGRG00001020767)	ENSCGRG00001021260	Nlrp3 (ENSCGRG00001021138)	Or2b11 (ENSCGRG00001008156)	Or2aa1 (ENSCGRG00001007439)	ENSCGRG00001005098	Mprip (ENSCGRG00001003308)	Pld6 (ENSCGRG00001021455)
Murinae	ANCESTRAL SPECIES	7	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997 #9	ENSGT00950000183522	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864
Mus	ANCESTRAL SPECIES	2	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997 #9	ENSGT00950000183522	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997 #9	ENSGT00950000183522	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.g.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997 #9	ENSGT00950000183522	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.g.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997 #9	ENSGT00950000183522	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.g.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864
spretus	MODERN SPECIES	2	Fam183b (MGP_SPRETEiJ_G0017251)	Gm12258 (MGP_SPRETEiJ_G0017252)	2810021J22Rik (MGP_SPRETEiJ_G0017253)	Zfp39 (MGP_SPRETEiJ_G0017254)	Btnl10 (MGP_SPRETEiJ_G0017255) #9	MGP_SPRETEiJ_G0017256	H2bc27 (MGP_SPRETEiJ_G0017257) #11	H2ac25 (MGP_SPRETEiJ_G0017258) #13	Trim17 (MGP_SPRETEiJ_G0017259)	Trim11 (MGP_SPRETEiJ_G0017260) #15	Obscn (MGP_SPRETEiJ_G0017261) #17	Iba57 (MGP_SPRETEiJ_G0017262) #19	Gjc2 (MGP_SPRETEiJ_G0017263)	Guk1 (MGP_SPRETEiJ_G0017264) #20	Mrpl55 (MGP_SPRETEiJ_G0017265) #21	2310033P09Rik (MGP_SPRETEiJ_G0017266) #22	Wnt3a (MGP_SPRETEiJ_G0017267) #24	Wnt9a (MGP_SPRETEiJ_G0017268) #25	Prss38 (MGP_SPRETEiJ_G0017269) #26	Snap47 (MGP_SPRETEiJ_G0017270) #27	Jmjd4 (MGP_SPRETEiJ_G0017271) #28	Zfp867 (MGP_SPRETEiJ_G0017272)	Zkscan17 (MGP_SPRETEiJ_G0017273)	Nlrp3 (MGP_SPRETEiJ_G0017274)	Or2b11 (MGP_SPRETEiJ_G0017275)	MGP_SPRETEiJ_G0017276	MGP_SPRETEiJ_G0009402	Mprip (MGP_SPRETEiJ_G0017277)	Pld6 (MGP_SPRETEiJ_G0017278)	Flcn (MGP_SPRETEiJ_G0017279)	Cops3 (MGP_SPRETEiJ_G0017280)
Steppe mouse	MODERN SPECIES	3105	Btnl10 (ENSMSIG00000021827) #9	ENSMSIG00000021818	H2bc27 (ENSMSIG00000021813) #11	H2bc26-ps (ENSMSIG00000021777) #12	H2ac25 (ENSMSIG00000021773) #13	H3f4 (ENSMSIG00000021760) #14	Trim17 (ENSMSIG00000021747)	Trim11 (ENSMSIG00000021692) #15	ENSMSIG00000021680	Obscn (ENSMSIG00000021262) #17	ENSMSIG00000021247	Iba57 (ENSMSIG00000021231) #19	Gjc2 (ENSMSIG00000021219)	Guk1 (ENSMSIG00000021189) #20	Mrpl55 (ENSMSIG00000021173) #21	2310033P09Rik (ENSMSIG00000021149) #22	ENSMSIG00000021128 #23	Wnt3a (ENSMSIG00000021119) #24	Wnt9a (ENSMSIG00000021113) #25	Prss38 (ENSMSIG00000021101) #26	Snap47 (ENSMSIG00000021067) #27	Jmjd4 (ENSMSIG00000021041) #28	Zfp867 (ENSMSIG00000021023)	ENSMSIG00000021018	Zkscan17 (ENSMSIG00000020997)	ENSMSIG00000020992	ENSMSIG00000020981	Nlrp3 (ENSMSIG00000020937)	Or2b11 (ENSMSIG00000020930)	Or2aa1 (ENSMSIG00000020924)	Mprip (ENSMSIG00000020270)
Mouse	MODERN SPECIES	2	2810021J22Rik (ENSMUSG00000020491)	Zfp39 (ENSMUSG00000037001)	Btnl10 (ENSMUSG00000020490) #9	Rnf187 (ENSMUSG00000020496)	H2bc27 (ENSMUSG00000056895) #11	H2bc26-ps (ENSMUSG00000080712) #12	H2ac25 (ENSMUSG00000078851) #13	Trim17 (ENSMUSG00000036964)	H3f4 (ENSMUSG00000080152) #14	Trim11 (ENSMUSG00000020455) #15	Obscn (ENSMUSG00000061462) #17	Iba57 (ENSMUSG00000049287) #19	Gjc2 (ENSMUSG00000043448)	Guk1 (ENSMUSG00000020444) #20	Mrpl55 (ENSMUSG00000036860) #21	2310033P09Rik (ENSMUSG00000020441) #22	Arf1 (ENSMUSG00000048076) #23	Wnt3a (ENSMUSG00000009900) #24	Wnt9a (ENSMUSG00000000126) #25	Prss38 (ENSMUSG00000049291) #26	Snap47 (ENSMUSG00000009894) #27	Jmjd4 (ENSMUSG00000036819) #28	Zfp867 (ENSMUSG00000054519)	Zkscan17 (ENSMUSG00000020472)	Nlrp3 (ENSMUSG00000032691)	Or2b11 (ENSMUSG00000059610)	Or2aa1 (ENSMUSG00000048919)	Or2w25 (ENSMUSG00000044061)	Mprip (ENSMUSG00000005417)	Pld6 (ENSMUSG00000043648)	Flcn (ENSMUSG00000032633)
Ryukyu mouse	MODERN SPECIES	2	Fam183b (MGP_CAROLIEiJ_G0016414)	Gm12258 (MGP_CAROLIEiJ_G0016415)	2810021J22Rik (MGP_CAROLIEiJ_G0016416)	Zfp39 (MGP_CAROLIEiJ_G0016417)	Btnl10 (MGP_CAROLIEiJ_G0016418) #9	MGP_CAROLIEiJ_G0016419	H2bc27 (MGP_CAROLIEiJ_G0016420) #11	H2ac25 (MGP_CAROLIEiJ_G0016422) #13	Trim17 (MGP_CAROLIEiJ_G0016421)	Trim11 (MGP_CAROLIEiJ_G0016423) #15	MGP_CAROLIEiJ_G0016424 #17	Iba57 (MGP_CAROLIEiJ_G0016425) #19	Gjc2 (MGP_CAROLIEiJ_G0016426)	Guk1 (MGP_CAROLIEiJ_G0016427) #20	Mrpl55 (MGP_CAROLIEiJ_G0016428) #21	2310033P09Rik (MGP_CAROLIEiJ_G0016429) #22	MGP_CAROLIEiJ_G0016430 #23	MGP_CAROLIEiJ_G0016431 #23	Wnt3a (MGP_CAROLIEiJ_G0016432) #24	Wnt9a (MGP_CAROLIEiJ_G0016433) #25	Prss38 (MGP_CAROLIEiJ_G0016434) #26	MGP_CAROLIEiJ_G0016435 #27	Jmjd4 (MGP_CAROLIEiJ_G0016436) #28	Zfp867 (MGP_CAROLIEiJ_G0016437)	Zkscan17 (MGP_CAROLIEiJ_G0016438)	Nlrp3 (MGP_CAROLIEiJ_G0016439)	Or2b11 (MGP_CAROLIEiJ_G0016440)	Or2aa1 (MGP_CAROLIEiJ_G0016441)	Or2w25 (MGP_CAROLIEiJ_G0008942)	Mprip (MGP_CAROLIEiJ_G0016442)	Pld6 (MGP_CAROLIEiJ_G0016443)
Shrew mouse	MODERN SPECIES	5	Fam183b (MGP_PahariEiJ_G0017545)	Gm12258 (MGP_PahariEiJ_G0017546)	2810021J22Rik (MGP_PahariEiJ_G0017547)	Zfp39 (MGP_PahariEiJ_G0017548)	Btnl10 (MGP_PahariEiJ_G0017549) #9	MGP_PahariEiJ_G0017550	H2bc27 (MGP_PahariEiJ_G0017551) #11	H2ac25 (MGP_PahariEiJ_G0017552) #13	Trim17 (MGP_PahariEiJ_G0017553)	Trim11 (MGP_PahariEiJ_G0017554) #15	Obscn (MGP_PahariEiJ_G0017555) #17	Iba57 (MGP_PahariEiJ_G0017556) #19	Gjc2 (MGP_PahariEiJ_G0017557)	Guk1 (MGP_PahariEiJ_G0017558) #20	Mrpl55 (MGP_PahariEiJ_G0017559) #21	2310033P09Rik (MGP_PahariEiJ_G0017560) #22	Arf1 (MGP_PahariEiJ_G0017561) #23	Wnt3a (MGP_PahariEiJ_G0017562) #24	Wnt9a (MGP_PahariEiJ_G0017563) #25	Prss38 (MGP_PahariEiJ_G0017564) #26	MGP_PahariEiJ_G0017565 #27	Jmjd4 (MGP_PahariEiJ_G0017566) #28	Zfp867 (MGP_PahariEiJ_G0017567)	Zkscan17 (MGP_PahariEiJ_G0017568)	MGP_PahariEiJ_G0017569	Or2b11 (MGP_PahariEiJ_G0017570)	Or2aa1 (MGP_PahariEiJ_G0017571)	Or2w25 (MGP_PahariEiJ_G0008415)	Mprip (MGP_PahariEiJ_G0017572)	Pld6 (MGP_PahariEiJ_G0017573)	Flcn (MGP_PahariEiJ_G0017574)
Rat	MODERN SPECIES	1	RGD1561277 (ENSRNOG00000051868)	LOC102555635 (ENSRNOG00000023431)	Zfp39 (ENSRNOG00000014712)	Btnl10 (ENSRNOG00000043019) #9	Rnf187 (ENSRNOG00000049219)	Hist3h2ba (ENSRNOG00000043419) #11	H2bu1 (ENSRNOG00000066919) #12	H2ac25 (ENSRNOG00000064520) #13	H2ac25 (ENSRNOG00000022983)	Trim11 (ENSRNOG00000002915) #15	Obscn (ENSRNOG00000058068) #17	Iba57 (ENSRNOG00000068756) #19	Gjc2 (ENSRNOG00000038328)	Guk1 (ENSRNOG00000002928) #20	Mrpl55 (ENSRNOG00000002943) #21	C10h1orf35 (ENSRNOG00000002944) #22	Arf1 (ENSRNOG00000060229) #23	Wnt3a (ENSRNOG00000003039) #24	Wnt9a (ENSRNOG00000003066) #25	Prss38 (ENSRNOG00000022548) #26	Snap47 (ENSRNOG00000022472) #27	Jmjd4 (ENSRNOG00000022438) #28	Zfp867 (ENSRNOG00000022431)	Ftl1 (ENSRNOG00000020843)	Zfp496 (ENSRNOG00000003129)	Nlrp3 (ENSRNOG00000003170)	Or2b11 (ENSRNOG00000022244)	Or2aa1 (ENSRNOG00000003210)	Mprip (ENSRNOG00000003226)	Pld6 (ENSRNOG00000021657)	Flcn (ENSRNOG00000003302)
Upper Galilee mountains blind mole rat	MODERN SPECIES	361															Mrpl55 (ENSNGAG00000023889) #21	2310033P09Rik (ENSNGAG00000016568) #22	Arf1 (ENSNGAG00000015070) #23	Wnt3a (ENSNGAG00000018479) #24	Wnt9a (ENSNGAG00000010691) #25	Prss38 (ENSNGAG00000012956) #26	Snap47 (ENSNGAG00000021482) #27	Jmjd4 (ENSNGAG00000023540) #28	Zfp867 (ENSNGAG00000020914)	Zkscan17 (ENSNGAG00000021846)	Nlrp3 (ENSNGAG00000013972)	Or2b11 (ENSNGAG00000011866)	ENSNGAG00000023903
Lesser Egyptian jerboa	MODERN SPECIES	63	Fam183b (ENSJJAG00000018849)	ENSJJAG00000000550	Zfp39 (ENSJJAG00000018925)	Btnl10 (ENSJJAG00000023413) #9	ENSJJAG00000011864 #10	H2bc26-ps (ENSJJAG00000003959) #12	H2ac25 (ENSJJAG00000004184) #13	ENSJJAG00000017460 ##14	Trim17 (ENSJJAG00000017850)	Trim11 (ENSJJAG00000019654) #15	Obscn (ENSJJAG00000023196) #17	Iba57 (ENSJJAG00000023432) #19	Gjc2 (ENSJJAG00000011405)	Guk1 (ENSJJAG00000021658) #20	Mrpl55 (ENSJJAG00000021164) #21	2310033P09Rik (ENSJJAG00000001888) #22	ENSJJAG00000020245 #23	Wnt3a (ENSJJAG00000020598) #24	Wnt9a (ENSJJAG00000020971) #25	Prss38 (ENSJJAG00000022512) #26	Snap47 (ENSJJAG00000023009) #27	Jmjd4 (ENSJJAG00000012776) #28	Zfp867 (ENSJJAG00000008459)	Zkscan17 (ENSJJAG00000022828)	Nlrp3 (ENSJJAG00000007323)	Or2b11 (ENSJJAG00000004515)	Or2aa1 (ENSJJAG00000021579)	ENSJJAG00000020201	ENSJJAG00000019586	ENSJJAG00000004303	ENSJJAG00000005004
Rodentia_A	ANCESTRAL SPECIES	31			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b
Hystricomorpha	ANCESTRAL SPECIES	63			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a.c	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01060000248581.C.a.b.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	79				ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01060000248581.C.a.b.a.a	ENSGT01090000260018.C.b.a.a.x
Hystricomorpha_b	ANCESTRAL SPECIES	106				ENSGT00940000160177	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01060000248581.C.a.b.a.a
Long-tailed chinchilla	MODERN SPECIES	288					ENSCLAG00000001377	ENSCLAG00000001526	RNF187 (ENSCLAG00000001629) #10	ENSCLAG00000017452 #11	H2BC26 (ENSCLAG00000017444) #12	TRIM17 (ENSCLAG00000000538)	TRIM11 (ENSCLAG00000000197) #15	ENSCLAG00000000505 #17	IBA57 (ENSCLAG00000000741) #19	GUK1 (ENSCLAG00000000853) #20	MRPL55 (ENSCLAG00000000917) #21	C1orf35 (ENSCLAG00000001077) #22	ARF1 (ENSCLAG00000000520) #23	WNT3A (ENSCLAG00000000529) #24	WNT9A (ENSCLAG00000000535) #25	SNAP47 (ENSCLAG00000000744) #27	JMJD4 (ENSCLAG00000000501) #28	ZNF496 (ENSCLAG00000000579)	NLRP3 (ENSCLAG00000000708)	OR2B11 (ENSCLAG00000017578)	ENSCLAG00000000375	OR2G3 (ENSCLAG00000017414)	OR9H1P (ENSCLAG00000017416)	ENSCLAG00000000640	ENSCLAG00000000675
Degu	MODERN SPECIES	351						ENSODEG00000000805	ENSODEG00000000778 #9	RNF187 (ENSODEG00000000732) #10	ENSODEG00000018714 #11	TRIM17 (ENSODEG00000001638)	TRIM11 (ENSODEG00000001136) #15	IBA57 (ENSODEG00000001118) #19	GJC2 (ENSODEG00000018947)	GUK1 (ENSODEG00000001088) #20	MRPL55 (ENSODEG00000001067) #21	C1orf35 (ENSODEG00000000976) #22	ENSODEG00000000958 #23	WNT3A (ENSODEG00000000874) #24	WNT9A (ENSODEG00000001287) #25	ENSODEG00000001243 #27	JMJD4 (ENSODEG00000001154) #28	ZNF496 (ENSODEG00000001108)	ENSODEG00000001075	NLRP3 (ENSODEG00000001033)	OR2B11 (ENSODEG00000018706)	OR2C3 (ENSODEG00000018646)	ENSODEG00000001954	OR2G3 (ENSODEG00000018774)	ENSODEG00000001509
Guinea pig	MODERN SPECIES	6	KDM3B (ENSCPOG00000002353)	FAM53C (ENSCPOG00000030846)	GFRA3 (ENSCPOG00000006594)	CDC23 (ENSCPOG00000010715)	ENSCPOG00000036704	RNF187 (ENSCPOG00000007405) #10	ENSCPOG00000021756 #11	ENSCPOG00000040098	H3-4 (ENSCPOG00000034653) #14	TRIM17 (ENSCPOG00000004213)	TRIM11 (ENSCPOG00000037756) #15	IBA57 (ENSCPOG00000035382) #19	GJC2 (ENSCPOG00000015099)	GUK1 (ENSCPOG00000037747) #20	MRPL55 (ENSCPOG00000014241) #21	C1orf35 (ENSCPOG00000000984) #22	ARF1 (ENSCPOG00000039117) #23	WNT3A (ENSCPOG00000030339) #24	WNT9A (ENSCPOG00000040771) #25	PRSS38 (ENSCPOG00000022885) #26	SNAP47 (ENSCPOG00000008518) #27	JMJD4 (ENSCPOG00000014538) #28
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000033964	ENSHGLG00000049243	ENSHGLG00000038457 #9	ENSHGLG00000000597 #10	ENSHGLG00000035981 #11	H2BC26 (ENSHGLG00000044541) #12	H2AC25 (ENSHGLG00000037975) #13	H3-4 (ENSHGLG00000020558) #14	TRIM17 (ENSHGLG00000006970)	TRIM11 (ENSHGLG00000002253) #15	OBSCN (ENSHGLG00000047806) #17	IBA57 (ENSHGLG00000002132) #19	GJC2 (ENSHGLG00000033969)	GUK1 (ENSHGLG00000000309) #20	MRPL55 (ENSHGLG00000048301) #21	ENSHGLG00000001640 #22	ARF1 (ENSHGLG00000038119) #23	WNT3A (ENSHGLG00000001502) #24	WNT9A (ENSHGLG00000038418) #25	PRSS38 (ENSHGLG00000043627) #26	ENSHGLG00000001357 #27	JMJD4 (ENSHGLG00000001365) #28	ENSHGLG00000047340	ENSHGLG00000001102	ENSHGLG00000043542	ENSHGLG00000000671	ENSHGLG00000000615	ENSHGLG00000041322	ENSHGLG00000045465	ENSHGLG00000035253	ENSHGLG00000019776
Sciuridae	ANCESTRAL SPECIES	55			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.a.b	ENSGT01060000248581.C.a.a
Marmotini	ANCESTRAL SPECIES	100			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a
Marmotini_b	ANCESTRAL SPECIES	218												ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b
Squirrel	MODERN SPECIES	463													IBA57 (ENSSTOG00000020525) #19	GJC2 (ENSSTOG00000009501)	GUK1 (ENSSTOG00000026156) #20	C1orf35 (ENSSTOG00000009295) #22	ENSSTOG00000009288 #23	WNT3A (ENSSTOG00000027360) #24	WNT9A (ENSSTOG00000008351) #25	PRSS38 (ENSSTOG00000027275) #26	SNAP47 (ENSSTOG00000028391) #27	JMJD4 (ENSSTOG00000006186) #28	ZNF496 (ENSSTOG00000027824)	NLRP3 (ENSSTOG00000010228)	OR2C3 (ENSSTOG00000008172)	ENSSTOG00000027492
Arctic ground squirrel	MODERN SPECIES	712													IBA57 (ENSUPAG00010009641) #19	GUK1 (ENSUPAG00010009613) #20	MRPL55 (ENSUPAG00010009599) #21	C1orf35 (ENSUPAG00010009587) #22	ENSUPAG00010009582	WNT3A (ENSUPAG00010009580) #24	WNT9A (ENSUPAG00010009568) #25	PRSS38 (ENSUPAG00010009560) #26	SNAP47 (ENSUPAG00010009551) #27	JMJD4 (ENSUPAG00010009540) #28	ENSUPAG00010009536	ENSUPAG00010009533	ENSUPAG00010009530	ENSUPAG00010009519	ZNF496 (ENSUPAG00010009506)
Eurasian red squirrel	MODERN SPECIES	15	ENSSVLG00005003828 #9	RNF187 (ENSSVLG00005003848) #10	ENSSVLG00005003856 #11	H2BC26 (ENSSVLG00005003865) #12	H2AC25 (ENSSVLG00005003875) #13	H3-4 (ENSSVLG00005003884) #14	TRIM17 (ENSSVLG00005003894)	TRIM11 (ENSSVLG00005003920) #15	OBSCN (ENSSVLG00005004022) #17	IBA57 (ENSSVLG00005004163) #19	GJC2 (ENSSVLG00005004174)	ENSSVLG00005004192	GUK1 (ENSSVLG00005004220) #20	ENSSVLG00005004242	MRPL55 (ENSSVLG00005004258) #21	C1orf35 (ENSSVLG00005004286) #22	ENSSVLG00005004310 #23	WNT3A (ENSSVLG00005004327) #24	WNT9A (ENSSVLG00005004346) #25	PRSS38 (ENSSVLG00005004365) #26	SNAP47 (ENSSVLG00005004391) #27	JMJD4 (ENSSVLG00005004411) #28	NLRP3 (ENSSVLG00005004506)	OR2C3 (ENSSVLG00005004659)	GCSAML (ENSSVLG00005004676)	ENSSVLG00005004709	OR2G3 (ENSSVLG00005004718)	OR14L1P (ENSSVLG00005004728)	ENSSVLG00005004740	ENSSVLG00005004759	ENSSVLG00005004766
Lagomorpha	ANCESTRAL SPECIES	245								ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24
Rabbit	MODERN SPECIES	836												ENSOCUG00000024934 #19	ENSOCUG00000024517	ENSOCUG00000027935 #20	MRPL55 (ENSOCUG00000015380) #21	C1orf35 (ENSOCUG00000025634) #22	ENSOCUG00000023645 #23	WNT3A (ENSOCUG00000004048) #24
Pika	MODERN SPECIES	1850															ENSOPRG00000015086 #21	ENSOPRG00000015072 #22	ENSOPRG00000015063 #23
Primates	ANCESTRAL SPECIES	30			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A
Haplorrhini	ANCESTRAL SPECIES	46		ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT00940000162666	ENSGT01090000260086.E.b
Simiiformes	ANCESTRAL SPECIES	33		ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00910000148176	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.a.b
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00910000148176	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058	ENSGT00390000003188
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00910000147389	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000157177.i.b
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000157177.i.b	ENSGT00940000156058
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000156644	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00910000147389	ENSGT00940000159380 #28	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000157177.i.b
Gorilla	MODERN SPECIES		ENSGGOG00000011409	ENSGGOG00000026023 #10	ENSGGOG00000037971 #11	H2BC26 (ENSGGOG00000039267) #12	H2AC25 (ENSGGOG00000037094) #13	ENSGGOG00000027960 #14	TRIM17 (ENSGGOG00000016899)	TRIM11 (ENSGGOG00000016890) #15	ENSGGOG00000012717 #17	ENSGGOG00000012820	IBA57 (ENSGGOG00000013646) #19	ENSGGOG00000027354	ENSGGOG00000013567 #20	ENSGGOG00000039931	ENSGGOG00000015709 #21	C1orf35 (ENSGGOG00000015702) #22	ARF1 (ENSGGOG00000011263) #23	ENSGGOG00000023449	WNT3A (ENSGGOG00000006562) #24	ENSGGOG00000037788	WNT9A (ENSGGOG00000004569) #25	PRSS38 (ENSGGOG00000012849) #26	SNAP47 (ENSGGOG00000008442) #27	ENSGGOG00000037683	JMJD4 (ENSGGOG00000008441) #28	ENSGGOG00000041432	ZNF678 (ENSGGOG00000042328)	CDC42BPA (ENSGGOG00000009605)	COQ8A (ENSGGOG00000009596)	PSEN2 (ENSGGOG00000003332)	ENSGGOG00000015112
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000156644	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00910000147389	ENSGT00940000159380 #28	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000157177.i.b
Human	MODERN SPECIES		ACTA1 (ENSG00000143632)	CCSAP (ENSG00000154429)	RAB4A (ENSG00000168118)	RHOU (ENSG00000116574)	RNF187 (ENSG00000168159) #10	H2BC26 (ENSG00000196890) #12	H2AC25 (ENSG00000181218) #13	H3-4 (ENSG00000168148) #14	TRIM17 (ENSG00000162931)	TRIM11 (ENSG00000154370) #15	OBSCN (ENSG00000154358) #17	IBA57 (ENSG00000181873) #19	GJC2 (ENSG00000198835)	GUK1 (ENSG00000143774) #20	MRPL55 (ENSG00000162910) #21	C1orf35 (ENSG00000143793) #22	ARF1 (ENSG00000143761) #23	WNT3A (ENSG00000154342) #24	WNT9A (ENSG00000143816) #25	PRSS38 (ENSG00000185888) #26	JMJD4 (ENSG00000081692) #28	SNAP47 (ENSG00000143740) #27	ZNF678 (ENSG00000181450)	CDC42BPA (ENSG00000143776)	COQ8A (ENSG00000163050)	PSEN2 (ENSG00000143801)	ITPKB (ENSG00000143772)	STUM (ENSG00000203685)	PARP1 (ENSG00000143799)	LIN9 (ENSG00000183814)	MIXL1 (ENSG00000185155)
Pan	ANCESTRAL SPECIES		ENSGT00940000156644	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00910000147389	ENSGT00940000159380 #28	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000157177.i.b
Chimpanzee	MODERN SPECIES		RNF187 (ENSPTRG00000002079) #10	H2BC27 (ENSPTRG00000049906) #11	ENSPTRG00000048372	H2BC26 (ENSPTRG00000050958) #12	H2AC25 (ENSPTRG00000047640) #13	H3-4 (ENSPTRG00000052362) #14	TRIM17 (ENSPTRG00000002076)	TRIM11 (ENSPTRG00000002071) #15	OBSCN (ENSPTRG00000046375) #17	ENSPTRG00000002073	IBA57 (ENSPTRG00000002072) #19	GJC2 (ENSPTRG00000002070)	GUK1 (ENSPTRG00000002069) #20	ENSPTRG00000051540	MRPL55 (ENSPTRG00000002068) #21	C1H1orf35 (ENSPTRG00000002067) #22	ARF1 (ENSPTRG00000002066) #23	ENSPTRG00000046943	WNT3A (ENSPTRG00000002064) #24	WNT9A (ENSPTRG00000002062) #25	PRSS38 (ENSPTRG00000002061) #26	SNAP47 (ENSPTRG00000002060) #27	ENSPTRG00000048948	JMJD4 (ENSPTRG00000002059) #28	ZNF678 (ENSPTRG00000002057)	CDC42BPA (ENSPTRG00000042934)	COQ8A (ENSPTRG00000033741)	PSEN2 (ENSPTRG00000002052)	ITPKB (ENSPTRG00000002051)	STUM (ENSPTRG00000030135)	ENSPTRG00000043266
Bonobo	MODERN SPECIES		ACTA1 (ENSPPAG00000033916)	RAB4A (ENSPPAG00000036595)	ENSPPAG00000034335	ENSPPAG00000001893 #11	H2BC26 (ENSPPAG00000025721) #12	H2AC25 (ENSPPAG00000013459) #13	H3-4 (ENSPPAG00000020018) #14	TRIM17 (ENSPPAG00000018691)	TRIM11 (ENSPPAG00000018913) #15	OBSCN (ENSPPAG00000039604) #17	ENSPPAG00000037707	ENSPPAG00000034125 #19	ENSPPAG00000031110 #20	ENSPPAG00000030143	ENSPPAG00000030545 #21	ENSPPAG00000031412 #22	ARF1 (ENSPPAG00000029612) #23	ENSPPAG00000003062	WNT3A (ENSPPAG00000033514) #24	WNT9A (ENSPPAG00000040433) #25	PRSS38 (ENSPPAG00000029608) #26	SNAP47 (ENSPPAG00000030087) #27	ENSPPAG00000043934	JMJD4 (ENSPPAG00000041921) #28	ENSPPAG00000042694	ENSPPAG00000042857	CDC42BPA (ENSPPAG00000030700)	COQ8A (ENSPPAG00000038783)	PSEN2 (ENSPPAG00000029453)	ITPKB (ENSPPAG00000034181)	ENSPPAG00000026314
Orangutan	MODERN SPECIES		RHOU (ENSPPYG00000000130)	ENSPPYG00000000131	ENSPPYG00000000133 #9	RNF187 (ENSPPYG00000041257) #10	ENSPPYG00000040985 #11	H2BC26 (ENSPPYG00000039326) #12	H2AC25 (ENSPPYG00000030037) #13	H3-4 (ENSPPYG00000000136) #14	TRIM17 (ENSPPYG00000000137)	ENSPPYG00000000138 #15	ENSPPYG00000000139 #17	IBA57 (ENSPPYG00000039751) #19	GJC2 (ENSPPYG00000000144)	ENSPPYG00000000145 #20	ENSPPYG00000000146 #21	C1orf35 (ENSPPYG00000000147) #22	ARF1 (ENSPPYG00000000148) #23	ENSPPYG00000000149	WNT3A (ENSPPYG00000000150) #24	WNT9A (ENSPPYG00000000151) #25	PRSS38 (ENSPPYG00000000152) #26	SNAP47 (ENSPPYG00000000153) #27	JMJD4 (ENSPPYG00000000154) #28	ENSPPYG00000000155	CDC42BPA (ENSPPYG00000000158)	COQ8A (ENSPPYG00000000159)	PSEN2 (ENSPPYG00000000160)	ITPKB (ENSPPYG00000000161)	STUM (ENSPPYG00000000162)	PARP1 (ENSPPYG00000000164)	ENSPPYG00000000165
Gibbon	MODERN SPECIES	20	ENSNLEG00000032941	RAB4A (ENSNLEG00000014339)	ENSNLEG00000027599	RHOU (ENSNLEG00000027920)	ENSNLEG00000029943 #11	H2BC26 (ENSNLEG00000033656) #12	H2AC25 (ENSNLEG00000033352) #13	H3-4 (ENSNLEG00000031785) #14	TRIM17 (ENSNLEG00000014332)	TRIM11 (ENSNLEG00000014315) #15	ENSNLEG00000014265 #17	ENSNLEG00000033321	IBA57 (ENSNLEG00000014263) #19	ENSNLEG00000014235 #20	ENSNLEG00000014215 #21	ENSNLEG00000033210 #22	ARF1 (ENSNLEG00000014137) #23	ENSNLEG00000029254	WNT3A (ENSNLEG00000014118) #24	WNT9A (ENSNLEG00000014116) #25	PRSS38 (ENSNLEG00000014112) #26	SNAP47 (ENSNLEG00000014097) #27	JMJD4 (ENSNLEG00000032639) #28	ENSNLEG00000031801	ZNF678 (ENSNLEG00000008917)	CDC42BPA (ENSNLEG00000013980)	COQ8A (ENSNLEG00000013937)	PSEN2 (ENSNLEG00000013924)	ITPKB (ENSNLEG00000013915)	ENSNLEG00000013913	ENSNLEG00000032044
Cercopithecidae	ANCESTRAL SPECIES	20		ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058
Cercopithecinae	ANCESTRAL SPECIES	18		ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT01090000260030.b	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058	ENSGT00390000003188
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000013340	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A.vc #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00910000148086	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT01090000260030.b	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058
Macaca	ANCESTRAL SPECIES		ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00940000154756.A.vc #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00910000148086	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT01090000260030.b	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000163577	ENSGT00940000157769	ENSGT00940000153464.A.b.a	ENSGT00940000154842.a.b	ENSGT00390000013340	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT01100000263514.A.f ##14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT01090000260030.b	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058	ENSGT00940000161627.a.b.a.a.b	ENSGT00390000003188
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000053016	UHMK1 (ENSMFAG00000041742)	UAP1 (ENSMFAG00000042529)	DDR2 (ENSMFAG00000036365)	ENSMFAG00000062302	RNF187 (ENSMFAG00000035159) #10	H2BC26 (ENSMFAG00000049429) #12	ENSMFAG00000057302	ENSMFAG00000063754 ##14	TRIM17 (ENSMFAG00000001716)	TRIM11 (ENSMFAG00000042805) #15	ENSMFAG00000008386	IBA57 (ENSMFAG00000002470) #19	GUK1 (ENSMFAG00000039838) #20	MRPL55 (ENSMFAG00000064574) #21	C1orf35 (ENSMFAG00000045378) #22	ENSMFAG00000034073 #23	WNT3A (ENSMFAG00000042689) #24	WNT9A (ENSMFAG00000062558) #25	PRSS38 (ENSMFAG00000045626) #26	SNAP47 (ENSMFAG00000001190) #27	JMJD4 (ENSMFAG00000043012) #28	ENSMFAG00000038489	CDC42BPA (ENSMFAG00000036131)	COQ8A (ENSMFAG00000045043)	PSEN2 (ENSMFAG00000000107)	ENSMFAG00000054654	ENSMFAG00000053714	ITPKB (ENSMFAG00000035876)	STUM (ENSMFAG00000035398)	PARP1 (ENSMFAG00000002526)
Pig-tailed macaque	MODERN SPECIES	288	RNF187 (ENSMNEG00000041115) #10	ENSMNEG00000023271 #11	H2BC26 (ENSMNEG00000007106) #12	H2AC25 (ENSMNEG00000011405) #13	H3-4 (ENSMNEG00000018662) #14	TRIM17 (ENSMNEG00000033783)	TRIM11 (ENSMNEG00000029145) #15	ENSMNEG00000022017	OBSCN (ENSMNEG00000039875) #17	ENSMNEG00000033684	IBA57 (ENSMNEG00000037320) #19	GJC2 (ENSMNEG00000000224)	ENSMNEG00000028444 #20	ENSMNEG00000035833	MRPL55 (ENSMNEG00000036387) #21	C1orf35 (ENSMNEG00000029724) #22	ARF1 (ENSMNEG00000037278) #23	ENSMNEG00000038219	WNT3A (ENSMNEG00000037152) #24	WNT9A (ENSMNEG00000028905) #25
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00390000013340	ENSGT00390000009510.a #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A.vc #17	ENSGT00390000016274	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00910000148086	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003
Olive baboon	MODERN SPECIES		DDR2 (ENSPANG00000011453)	ENSPANG00000045838	HSD17B7 (ENSPANG00000026079)	ENSPANG00000050063 #11	H2BC26 (ENSPANG00000042066) #12	H2AC25 (ENSPANG00000039633) #13	H3-4 (ENSPANG00000032788) #14	TRIM17 (ENSPANG00000014849)	TRIM11 (ENSPANG00000004478) #15	ENSPANG00000035184 #17	ENSPANG00000030630	IBA57 (ENSPANG00000021033) #19	GJC2 (ENSPANG00000035104)	ENSPANG00000020945 #20	MRPL55 (ENSPANG00000017717) #21	C1orf35 (ENSPANG00000009889) #22	ENSPANG00000004523 #23	WNT3A (ENSPANG00000019711) #24	WNT9A (ENSPANG00000048565) #25	PRSS38 (ENSPANG00000024006) #26	SNAP47 (ENSPANG00000017951) #27	JMJD4 (ENSPANG00000031507) #28	ENSPANG00000048924	ENSPANG00000048983	CDC42BPA (ENSPANG00000007777)	COQ8A (ENSPANG00000005934)	PSEN2 (ENSPANG00000015683)	ENSPANG00000040643	ITPKB (ENSPANG00000014076)	ENSPANG00000042335	ENSPANG00000041992
Cercopithecinae_d	ANCESTRAL SPECIES	160		ENSGT00390000009510.a #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A.vc #17	ENSGT00390000016274	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00910000148086	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT01090000260030.b	ENSGT00910000147389	ENSGT00940000154251.A.a.a.a
Sooty mangabey	MODERN SPECIES	269	ENSCATG00000036222 #10	ENSCATG00000016310 #11	H2BC26 (ENSCATG00000043414) #12	H2AC25 (ENSCATG00000019930) #13	H3-4 (ENSCATG00000015110) #14	TRIM17 (ENSCATG00000004723)	TRIM11 (ENSCATG00000037992) #15	ENSCATG00000028342 #17	ENSCATG00000018563	ENSCATG00000015518 #17	ENSCATG00000033121	IBA57 (ENSCATG00000033547) #19	GJC2 (ENSCATG00000043427)	ENSCATG00000030372 #20	MRPL55 (ENSCATG00000001114) #21	C1orf35 (ENSCATG00000036828) #22	ENSCATG00000034162 #23	ENSCATG00000026444	WNT3A (ENSCATG00000024249) #24	WNT9A (ENSCATG00000037437) #25	PRSS38 (ENSCATG00000028007) #26	ENSCATG00000032383	SNAP47 (ENSCATG00000017110) #27	JMJD4 (ENSCATG00000030697) #28	ENSCATG00000028870	ENSCATG00000036887
Drill	MODERN SPECIES	1468					ENSMLEG00000027649 #11	H2BC26 (ENSMLEG00000011931) #12	H2AC25 (ENSMLEG00000019082) #13	H3-4 (ENSMLEG00000027834) #14	TRIM17 (ENSMLEG00000036683)	TRIM11 (ENSMLEG00000035665) #15	OBSCN (ENSMLEG00000039921) #17	ENSMLEG00000000202	IBA57 (ENSMLEG00000035651) #19	ENSMLEG00000033820 #20	MRPL55 (ENSMLEG00000043407) #21	C1orf35 (ENSMLEG00000044367) #22	ARF1 (ENSMLEG00000040308) #23	ENSMLEG00000010724	WNT3A (ENSMLEG00000034108) #24	WNT9A (ENSMLEG00000041830) #25	PRSS38 (ENSMLEG00000031236) #26	SNAP47 (ENSMLEG00000028118) #27	JMJD4 (ENSMLEG00000038450) #28	ENSMLEG00000029152	ZNF678 (ENSMLEG00000030111)
Vervet Monkey	MODERN SPECIES	17				RNF187 (ENSCSAG00000016553) #10	ENSCSAG00000000273 #11	H2BC26 (ENSCSAG00000000272) #12	H2AC25 (ENSCSAG00000000271) #13	TRIM17 (ENSCSAG00000016546)	TRIM11 (ENSCSAG00000016542) #15	OBSCN (ENSCSAG00000016528) #17	ENSCSAG00000000270	IBA57 (ENSCSAG00000016503) #19	GJC2 (ENSCSAG00000000269)	GUK1 (ENSCSAG00000016494) #20	MRPL55 (ENSCSAG00000016477) #21	C1orf35 (ENSCSAG00000016465) #22	ARF1 (ENSCSAG00000016460) #23	WNT3A (ENSCSAG00000016455) #24	WNT9A (ENSCSAG00000016440) #25	PRSS38 (ENSCSAG00000016434) #26	SNAP47 (ENSCSAG00000016423) #27	JMJD4 (ENSCSAG00000016420) #28	ENSCSAG00000016411	CDC42BPA (ENSCSAG00000016402)	COQ8A (ENSCSAG00000016382)	PSEN2 (ENSCSAG00000016372)	ITPKB (ENSCSAG00000016366)	STUM (ENSCSAG00000016358)	PARP1 (ENSCSAG00000016354)	LIN9 (ENSCSAG00000016351)	MIXL1 (ENSCSAG00000016345)
Rhinopithecus	ANCESTRAL SPECIES	247			ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00910000147389	ENSGT00390000012563.m.b.b
Golden snub-nosed monkey	MODERN SPECIES	1884												IBA57 (ENSRROG00000033786) #19	GJC2 (ENSRROG00000044410)	ENSRROG00000031989 #20	MRPL55 (ENSRROG00000033833) #21	C1orf35 (ENSRROG00000039110) #22	ARF1 (ENSRROG00000040407) #23	ENSRROG00000034216	WNT3A (ENSRROG00000037718) #24	WNT9A (ENSRROG00000031230) #25	PRSS38 (ENSRROG00000032353) #26	SNAP47 (ENSRROG00000004862) #27	JMJD4 (ENSRROG00000039305) #28	ENSRROG00000036976	ENSRROG00000013119
Black snub-nosed monkey	MODERN SPECIES	736				ENSRBIG00000029298 #11	H2BC26 (ENSRBIG00000013451) #12	H2AC25 (ENSRBIG00000024183) #13	H3-4 (ENSRBIG00000029468) #14	TRIM17 (ENSRBIG00000017974)	TRIM11 (ENSRBIG00000027735) #15	OBSCN (ENSRBIG00000044496) #17	ENSRBIG00000031054	IBA57 (ENSRBIG00000042111) #19	GJC2 (ENSRBIG00000039202)	ENSRBIG00000030901 #20	MRPL55 (ENSRBIG00000038180) #21	C1orf35 (ENSRBIG00000032408) #22	ARF1 (ENSRBIG00000043809) #23	ENSRBIG00000040413	WNT3A (ENSRBIG00000039877) #24	WNT9A (ENSRBIG00000036258) #25
Platyrrhini	ANCESTRAL SPECIES	55			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.bb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00910000148176	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT00940000162246	ENSGT01090000259995.b.b.a.a.a ##7	ENSGT00730000111648
Cebidae	ANCESTRAL SPECIES	23	ENSGT00390000018900	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.bb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT00940000162246	ENSGT01090000259995.b.b.a.a.a ##7	ENSGT00730000111648	ENSGT00570000079564
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00390000018900	ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000016274	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.bb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT00940000162246	ENSGT01090000260018.C.b.a.a	ENSGT00570000079564	ENSGT00390000018500.a
Bolivian squirrel monkey	MODERN SPECIES	114	SMYD3 (ENSSBOG00000026164)	ENSSBOG00000035160	TFB2M (ENSSBOG00000033950)	CNST (ENSSBOG00000028424)	SCCPDH (ENSSBOG00000021995)	AHCTF1 (ENSSBOG00000004404)	ENSSBOG00000019925 #11	H2BC26 (ENSSBOG00000008375) #12	H2AC25 (ENSSBOG00000019953) #13	TRIM17 (ENSSBOG00000030344)	TRIM11 (ENSSBOG00000005125) #15	OBSCN (ENSSBOG00000032380) #17	IBA57 (ENSSBOG00000022497) #19	GUK1 (ENSSBOG00000026897) #20	MRPL55 (ENSSBOG00000035388) #21	C1orf35 (ENSSBOG00000023673) #22	ENSSBOG00000030557 #23	WNT3A (ENSSBOG00000020846) #24	WNT9A (ENSSBOG00000025218) #25	PRSS38 (ENSSBOG00000025229) #26	ENSSBOG00000025438 #27	JMJD4 (ENSSBOG00000026344) #28	ENSSBOG00000021324	ZNF496 (ENSSBOG00000005783)	NLRP3 (ENSSBOG00000030084)	OR2B11 (ENSSBOG00000031196)	OR2C3 (ENSSBOG00000028292)	GCSAML (ENSSBOG00000033373)	TRIM58 (ENSSBOG00000024282)	ENSSBOG00000026393	LYPD8 (ENSSBOG00000032248)
Capuchin	MODERN SPECIES	75	ENSCCAG00000025344 #9	RNF187 (ENSCCAG00000028705) #10	ENSCCAG00000012567 #11	H2BU1 (ENSCCAG00000015023) #12	H2AW (ENSCCAG00000012315) #13	ENSCCAG00000036407	TRIM17 (ENSCCAG00000025121)	TRIM11 (ENSCCAG00000036943) #15	ENSCCAG00000016195	OBSCN (ENSCCAG00000032571) #17	ENSCCAG00000023630	IBA57 (ENSCCAG00000019844) #19	GJC2 (ENSCCAG00000020287)	GUK1 (ENSCCAG00000035707) #20	MRPL55 (ENSCCAG00000031724) #21	C1orf35 (ENSCCAG00000020266) #22	ENSCCAG00000023374 #23	WNT3A (ENSCCAG00000009359) #24	WNT9A (ENSCCAG00000030978) #25	PRSS38 (ENSCCAG00000020907) #26	SNAP47 (ENSCCAG00000027134) #27	JMJD4 (ENSCCAG00000035807) #28	ENSCCAG00000021671	ENSCCAG00000031402	ZNF670 (ENSCCAG00000027449)	ZNF124 (ENSCCAG00000026559)
Marmoset	MODERN SPECIES	10	SCCPDH (ENSCJAG00000016806)	AHCTF1 (ENSCJAG00000016790)	ENSCJAG00000082135	ENSCJAG00000059253 #9	RNF187 (ENSCJAG00000016779) #10	ENSCJAG00000071519 #11	H2BC26 (ENSCJAG00000077602) #12	H2AC25 (ENSCJAG00000083637) #13	TRIM17 (ENSCJAG00000016765)	TRIM11 (ENSCJAG00000016757) #15	OBSCN (ENSCJAG00000054288) #17	IBA57 (ENSCJAG00000016749) #19	GJC2 (ENSCJAG00000016746)	ENSCJAG00000016738 #20	MRPL55 (ENSCJAG00000016730) #21	C1orf35 (ENSCJAG00000016721) #22	ARF1 (ENSCJAG00000041786) #23	WNT3A (ENSCJAG00000016650) #24	WNT9A (ENSCJAG00000080517) #25	SNAP47 (ENSCJAG00000039821) #27	JMJD4 (ENSCJAG00000011727) #28	ZNF669 (ENSCJAG00000048657)	ZNF670 (ENSCJAG00000011738)	ZNF124 (ENSCJAG00000011765)	ENSCJAG00000082577	ENSCJAG00000066453	ZNF496 (ENSCJAG00000011781)	NLRP3 (ENSCJAG00000011813)	OR2B11 (ENSCJAG00000075428)	GCSAML (ENSCJAG00000043513)	OR13G1 (ENSCJAG00000022631)
Mas night monkey	MODERN SPECIES	1116				ENSANAG00000026087	ENSANAG00000031738 #11	H2BC26 (ENSANAG00000010772) #12	H2AC25 (ENSANAG00000031714) #13	ENSANAG00000022375	ENSANAG00000028749	TRIM11 (ENSANAG00000034240) #15	OBSCN (ENSANAG00000024031) #17	ENSANAG00000029250	IBA57 (ENSANAG00000022164) #19	GUK1 (ENSANAG00000027172) #20	MRPL55 (ENSANAG00000036592) #21	C1orf35 (ENSANAG00000020714) #22	ENSANAG00000036021 #23	WNT3A (ENSANAG00000021377) #24	WNT9A (ENSANAG00000032624) #25	SNAP47 (ENSANAG00000035151) #27	JMJD4 (ENSANAG00000028105) #28	ENSANAG00000022916	ZNF669 (ENSANAG00000013317)	ZNF670 (ENSANAG00000033492)	ZNF124 (ENSANAG00000029658)	ZNF496 (ENSANAG00000022228)	NLRP3 (ENSANAG00000030863)	OR2C3 (ENSANAG00000035800)	GCSAML (ENSANAG00000030297)	OR1C1 (ENSANAG00000026494)	TRIM58 (ENSANAG00000028275)
Tarsier	MODERN SPECIES	5065					ENSTSYG00000036415 #11	H2BC26 (ENSTSYG00000029005) #12	H2AC25 (ENSTSYG00000026130) #13	H3-4 (ENSTSYG00000037257) #14	TRIM17 (ENSTSYG00000008473)	TRIM11 (ENSTSYG00000029832) #15	OBSCN (ENSTSYG00000031392) #17	ENSTSYG00000006833	IBA57 (ENSTSYG00000014591) #19	GUK1 (ENSTSYG00000001325) #20	MRPL55 (ENSTSYG00000002932) #21	CUNH1orf35 (ENSTSYG00000031003) #22	ARF1 (ENSTSYG00000027538) #23	WNT3A (ENSTSYG00000027346) #24	WNT9A (ENSTSYG00000025543) #25	PRSS38 (ENSTSYG00000011299) #26	SNAP47 (ENSTSYG00000034505) #27	JMJD4 (ENSTSYG00000000484) #28	ENSTSYG00000028507	ENSTSYG00000002726	ENSTSYG00000034800	ZNF669 (ENSTSYG00000003204)	ENSTSYG00000010242
Strepsirrhini	ANCESTRAL SPECIES	52			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000153165.a.a.d.j	ENSGT01100000263507.D.a.a.b.b.b.b.b	ENSGT00940000164205
Lemuriformes	ANCESTRAL SPECIES	18			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000159259.b	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000160555	ENSGT00730000111087	ENSGT00940000157358	ENSGT00940000162379	ENSGT00940000157028	ENSGT01050000244864.B.b
Lemuriformes_a	ANCESTRAL SPECIES	88			ENSGT00940000163997 #9	ENSGT00390000009510 #10	ENSGT01100000263474.a.b.b.e.b.a.b #11	ENSGT01100000263474.a.b.b.e.b.a.a #12	ENSGT00940000153092.a.a.c.b #13	ENSGT01100000263514.A.e.b #14	ENSGT00940000162155	ENSGT00940000160371 #15	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000159259.b	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000160555	ENSGT00730000111087	ENSGT00940000157358	ENSGT00940000162379	ENSGT00940000157028	ENSGT01050000244864.B.b
Coquerels sifaka	MODERN SPECIES	234			ENSPCOG00000026534	ENSPCOG00000024361	RNF187 (ENSPCOG00000002810) #10	ENSPCOG00000005164 #11	H2BC26 (ENSPCOG00000003934) #12	H2AC25 (ENSPCOG00000013826) #13	H3-4 (ENSPCOG00000026493) #14	TRIM17 (ENSPCOG00000026287)	TRIM11 (ENSPCOG00000016532) #15	OBSCN (ENSPCOG00000028285) #17	IBA57 (ENSPCOG00000028589) #19	GUK1 (ENSPCOG00000009766) #20	MRPL55 (ENSPCOG00000013827) #21	C1orf35 (ENSPCOG00000025028) #22	ARF1 (ENSPCOG00000026770) #23	WNT3A (ENSPCOG00000024931) #24	WNT9A (ENSPCOG00000015468) #25	PRSS38 (ENSPCOG00000019582) #26	SNAP47 (ENSPCOG00000012484) #27	JMJD4 (ENSPCOG00000019446) #28	ENSPCOG00000024700	ATP12A (ENSPCOG00000025271)	RNF17 (ENSPCOG00000020211)	CENPJ (ENSPCOG00000016218)	PARP4 (ENSPCOG00000022852)	MPHOSPH8 (ENSPCOG00000020055)	PSPC1 (ENSPCOG00000014364)	ZMYM5 (ENSPCOG00000000658)	ZMYM2 (ENSPCOG00000021632)
Greater bamboo lemur	MODERN SPECIES	769				ENSPSMG00000013365 #11	H2BC26 (ENSPSMG00000013352) #12	ENSPSMG00000013337 ##13	ENSPSMG00000013327	TRIM17 (ENSPSMG00000013322)	TRIM11 (ENSPSMG00000013308) #15	ENSPSMG00000013289 #17	ENSPSMG00000013283 #17	IBA57 (ENSPSMG00000013279) #19	GJC2 (ENSPSMG00000013273)	GUK1 (ENSPSMG00000013269) #20	MRPL55 (ENSPSMG00000013256) #21	C1orf35 (ENSPSMG00000013245) #22	ARF1 (ENSPSMG00000013226) #23	ENSPSMG00000013201 #24
Mouse lemur	MODERN SPECIES	4	ENSMICG00000026956	ENSMICG00000026371	ENSMICG00000045969	ENSMICG00000046509	ENSMICG00000038421	ENSMICG00000048090 #11	H2BC26 (ENSMICG00000041996) #12	H2AC25 (ENSMICG00000044054) #13	H3-4 (ENSMICG00000045112) #14	TRIM17 (ENSMICG00000013315)	TRIM11 (ENSMICG00000029090) #15	OBSCN (ENSMICG00000000557) #17	IBA57 (ENSMICG00000041871) #19	GUK1 (ENSMICG00000003322) #20	MRPL55 (ENSMICG00000031760) #21	C1orf35 (ENSMICG00000027688) #22	ARF1 (ENSMICG00000047362) #23	WNT3A (ENSMICG00000010671) #24	WNT9A (ENSMICG00000047095) #25	PRSS38 (ENSMICG00000042943) #26	SNAP47 (ENSMICG00000029011) #27	JMJD4 (ENSMICG00000036474) #28	ENSMICG00000042765	ATP12A (ENSMICG00000007697)	RNF17 (ENSMICG00000010364)	CENPJ (ENSMICG00000010400)	PARP4 (ENSMICG00000028028)	MPHOSPH8 (ENSMICG00000014677)	PSPC1 (ENSMICG00000013970)	ZMYM5 (ENSMICG00000012322)	ZMYM2 (ENSMICG00000002834)
Bushbaby	MODERN SPECIES	400			ENSOGAG00000030822	RNF187 (ENSOGAG00000011214) #10	ENSOGAG00000031086 #11	H2BC26 (ENSOGAG00000009221) #12	H2AC25 (ENSOGAG00000009219) #13	H3-4 (ENSOGAG00000031879) #14	TRIM17 (ENSOGAG00000009217)	TRIM11 (ENSOGAG00000009216) #15	ENSOGAG00000030331 #17	IBA57 (ENSOGAG00000009178) #19	GJC2 (ENSOGAG00000033132)	GUK1 (ENSOGAG00000029450) #20	MRPL55 (ENSOGAG00000010981) #21	C1orf35 (ENSOGAG00000010978) #22	ARF1 (ENSOGAG00000010974) #23	WNT3A (ENSOGAG00000013493) #24	WNT9A (ENSOGAG00000013474) #25	PRSS38 (ENSOGAG00000026355) #26	SNAP47 (ENSOGAG00000004945) #27	JMJD4 (ENSOGAG00000004942) #28	ENSOGAG00000003566	ENSOGAG00000028076
Atlantogenata	ANCESTRAL SPECIES	148										ENSGT00390000016274	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000155138.f	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Afrotheria	ANCESTRAL SPECIES	186										ENSGT00390000016274	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000155138.f	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Afrotheria_a	ANCESTRAL SPECIES	187										ENSGT00390000016274	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000155138.f	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Elephant	MODERN SPECIES	27								S100B (ENSLAFG00000014935)	PRMT2 (ENSLAFG00000009604)	ENSLAFG00000030495	ENSLAFG00000022315 #17	IBA57 (ENSLAFG00000010222) #19	GJC2 (ENSLAFG00000010220)	GUK1 (ENSLAFG00000026666) #20	MRPL55 (ENSLAFG00000003008) #21	C1orf35 (ENSLAFG00000003007) #22	ARF1 (ENSLAFG00000006987) #23	ENSLAFG00000031881 #24	WNT9A (ENSLAFG00000017352) #25	ENSLAFG00000031393	PRSS38 (ENSLAFG00000005934) #26	SNAP47 (ENSLAFG00000028954) #27	JMJD4 (ENSLAFG00000022162) #28	ENSLAFG00000032186	TRIM11 (ENSLAFG00000017039) #15	H3-4 (ENSLAFG00000031137) #14	ENSLAFG00000026359 #13	ENSLAFG00000018209 #10	ENSLAFG00000027457 #13	ENSLAFG00000031204	ENSLAFG00000020656 #9
Hyrax	MODERN SPECIES	3251															MRPL55 (ENSPCAG00000010591) #21	C1orf35 (ENSPCAG00000010504) #22	ENSPCAG00000010484
Xenarthra	ANCESTRAL SPECIES	596													ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000155138.f
Armadillo	MODERN SPECIES	2365												ENSDNOG00000035986 #17	ENSDNOG00000040893 #17	ENSDNOG00000023608 #19	MRPL55 (ENSDNOG00000024342) #21	C1orf35 (ENSDNOG00000040335) #22	ENSDNOG00000049038 #23	WNT3A (ENSDNOG00000037172) #24	WNT9A (ENSDNOG00000007791) #25	ENSDNOG00000047752	ENSDNOG00000049106	ENSDNOG00000039640
Marsupialia	ANCESTRAL SPECIES	6												ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000153341.b.r	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00390000005082	ENSGT00940000161932.b	ENSGT00940000162829.c	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454
Marsupialia_b	ANCESTRAL SPECIES	11												ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000153341.b.r	ENSGT00940000154494.a #26	ENSGT00940000157345	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00390000005082	ENSGT00940000161932.b	ENSGT00940000162829.c	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619
Diprotodontia	ANCESTRAL SPECIES	19												ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000153341.b.r	ENSGT00940000154494.a #26	ENSGT00940000157345	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00390000005082	ENSGT00940000161932.b	ENSGT00940000162829.c	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619
Diprotodontia_a	ANCESTRAL SPECIES	21												ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000153341.b.r	ENSGT00940000154494.a #26	ENSGT00940000157345	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00390000005082	ENSGT00940000161932.b	ENSGT00940000162829.c	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619
Common wonbat	MODERN SPECIES	1091										ENSVURG00010010975 #17	ENSVURG00010010994	ENSVURG00010011004 #19	ENSVURG00010011010	GUK1 (ENSVURG00010011021) #20	ENSVURG00010011028 #21	C1orf35 (ENSVURG00010011035) #22	ARF1 (ENSVURG00010011047) #23	WNT3A (ENSVURG00010011060) #24	WNT9A (ENSVURG00010011070) #25	ENSVURG00010011076	ENSVURG00010011084 #26	ENSVURG00010011097	SNAP47 (ENSVURG00010011117) #27	JMJD4 (ENSVURG00010011120) #28	ALS2CL (ENSVURG00010011135)	ENSVURG00010011184	ENSVURG00010011192	PTH1R (ENSVURG00010011202)	CCDC12 (ENSVURG00010011216)	NBEAL2 (ENSVURG00010011244)	ENSVURG00010011508
koala	MODERN SPECIES	75	ENSPCIG00000017084	ENSPCIG00000017087	ENSPCIG00000017089	ENSPCIG00000001531	ENSPCIG00000031791	ENSPCIG00000015992	ENSPCIG00000017091	ENSPCIG00000015990	ENSPCIG00000021838	OBSCN (ENSPCIG00000021795) #17	ENSPCIG00000021839	ENSPCIG00000021842 #19	GJC2 (ENSPCIG00000021844)	ENSPCIG00000021846 #20	ENSPCIG00000021848	C1orf35 (ENSPCIG00000021849) #22	ARF1 (ENSPCIG00000021851) #23	WNT3A (ENSPCIG00000021855) #24	WNT9A (ENSPCIG00000030182) #25	ENSPCIG00000027274	ENSPCIG00000031488 #26	ENSPCIG00000001298	ENSPCIG00000001277	SNAP47 (ENSPCIG00000025912) #27	JMJD4 (ENSPCIG00000025913) #28	ALS2CL (ENSPCIG00000025915)	TMIE (ENSPCIG00000025919)	ENSPCIG00000025921	MYL3 (ENSPCIG00000006157)	PTH1R (ENSPCIG00000025925)	CCDC12 (ENSPCIG00000025941)
Tasmanian devil	MODERN SPECIES		ENSSHAG00000024915	ENSSHAG00000022645	ENSSHAG00000007146	ENSSHAG00000006552	ENSSHAG00000001445	ENSSHAG00000005659	ENSSHAG00000031960	ENSSHAG00000001927	ENSSHAG00000001725	ENSSHAG00000027621 #17	ENSSHAG00000015166	IBA57 (ENSSHAG00000026953) #19	GJC2 (ENSSHAG00000022939)	GUK1 (ENSSHAG00000014798) #20	MRPL55 (ENSSHAG00000027608) #21	C1orf35 (ENSSHAG00000014645) #22	ENSSHAG00000021122 #23	WNT3A (ENSSHAG00000023523) #24	WNT9A (ENSSHAG00000012600) #25	ENSSHAG00000023350	ENSSHAG00000023996 #26	ENSSHAG00000029686	SNAP47 (ENSSHAG00000009204) #27	JMJD4 (ENSSHAG00000009023) #28	ENSSHAG00000008746	ENSSHAG00000031952	ENSSHAG00000007862	ENSSHAG00000007071	ENSSHAG00000022564	MYL3 (ENSSHAG00000006447)	PTH1R (ENSSHAG00000002214)
Platypus	MODERN SPECIES	4	SEC22C (ENSOANG00000036395)	ENSOANG00000040878	ENSOANG00000048058	ENSOANG00000008946	ZBTB47 (ENSOANG00000010793)	KLHL40 (ENSOANG00000037937)	HHATL (ENSOANG00000004353)	HIGD1A (ENSOANG00000038143)	ENSOANG00000050342	ENSOANG00000050228	ENSOANG00000042737 #17	ENSOANG00000047271	IBA57 (ENSOANG00000049649) #19	GUK1 (ENSOANG00000036937) #20	ENSOANG00000046224	ENSOANG00000038636 #22	ARF1 (ENSOANG00000048039) #23	WNT9A (ENSOANG00000046921) #25	ENSOANG00000042376 #28	ENSOANG00000037642	ENSOANG00000046262	MYL3 (ENSOANG00000005484)	PTH1R (ENSOANG00000039996)	CCDC12 (ENSOANG00000044446)	ENSOANG00000050324	ENSOANG00000004262	NBEAL2 (ENSOANG00000044193)	ENSOANG00000048638	ENSOANG00000050792	KIF9 (ENSOANG00000038541)	KLHL18 (ENSOANG00000047602)
Sauria	ANCESTRAL SPECIES	15	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000166800
Lepidosauria	ANCESTRAL SPECIES	5	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #17	ENSGT00940000154756.B ##17	ENSGT00940000177473	ENSGT00940000166913	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000166800
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000166913	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000166800
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000153709.B.j	ENSGT00940000153709.B.i	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Elapidae	ANCESTRAL SPECIES	24	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000153709.B.j	ENSGT00940000153709.B.i	ENSGT00940000154756.A.nd #17	ENSGT00940000154756.B ##17	ENSGT00940000177473	ENSGT00940000168428	ENSGT00940000154756.A.md.b #17	ENSGT00940000154756.A.md.a #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.a.a ##23	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026	ENSGT00390000000410.fb.b
Elapidae_a	ANCESTRAL SPECIES	91	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000153709.B.j	ENSGT00940000153709.B.i	ENSGT00940000154756.A.nd #17	ENSGT00940000168428	ENSGT00940000154756.A.md.b #17	ENSGT00940000154756.A.md.a #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.a.a ##23	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026	ENSGT00390000000410.fb.b
Acanthophiinae	ANCESTRAL SPECIES	95	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000153709.B.j	ENSGT00940000153709.B.i	ENSGT00940000154756.A.nd #17	ENSGT00940000174795	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.a.a ##23	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573
Eastern brown snake	MODERN SPECIES	134	ENSPTXG00000009654	ENSPTXG00000009653	ENSPTXG00000009652 #17	ENSPTXG00000009651 #17	ENSPTXG00000009650	ENSPTXG00000009649 ##17	ENSPTXG00000009648	ENSPTXG00000009647 #17	ENSPTXG00000009646 #17	ENSPTXG00000009645 #17	ENSPTXG00000009643 #17	IBA57 (ENSPTXG00000009642) #19	GJC2 (ENSPTXG00000009641)	GUK1 (ENSPTXG00000009640) #20	ENSPTXG00000009639	C1orf35 (ENSPTXG00000009638) #22	ENSPTXG00000009637 ##23	ENSPTXG00000009636	WNT9A (ENSPTXG00000009631) #25
Mainland tiger snake	MODERN SPECIES	188	ENSNSUG00000014678	ENSNSUG00000014681	ENSNSUG00000014682	KLHL40 (ENSNSUG00000014683)	HHATL (ENSNSUG00000014684)	ENSNSUG00000014686	ENSNSUG00000014687	ENSNSUG00000014688	ENSNSUG00000014689	ENSNSUG00000014691 #17	ENSNSUG00000014692 #17	ENSNSUG00000014693	IBA57 (ENSNSUG00000014694) #19	GJC2 (ENSNSUG00000014695)	ENSNSUG00000014696	C1orf35 (ENSNSUG00000014697) #22	ENSNSUG00000014698 ##23	ENSNSUG00000014699	SNAP47 (ENSNSUG00000014700) #27	JMJD4 (ENSNSUG00000014701) #28
Blue-lipped sea krait	MODERN SPECIES	8244														ENSLLTG00000012077	ENSLLTG00000012087	ENSLLTG00000012105 #22
Indian cobra	MODERN SPECIES	337	CCDC13 (ENSNNAG00000009418)	ENSNNAG00000009402	ENSNNAG00000009388	ENSNNAG00000009366	ENSNNAG00000009323 #17	ENSNNAG00000009296 ##17	ENSNNAG00000009270 #17	ENSNNAG00000009254 #17	ENSNNAG00000009220 #17	ENSNNAG00000009207 #17	ENSNNAG00000009177	IBA57 (ENSNNAG00000009159) #19	GJC2 (ENSNNAG00000009149)	GUK1 (ENSNNAG00000009097) #20	ENSNNAG00000009060	C1orf35 (ENSNNAG00000009012) #22	ARF1 (ENSNNAG00000008988) ##23	ENSNNAG00000008905	SNAP47 (ENSNNAG00000008865) #27	JMJD4 (ENSNNAG00000008825) #28	MYL3 (ENSNNAG00000008789)	NBEAL2 (ENSNNAG00000008452)	ENSNNAG00000008353	ENSNNAG00000008332	ENSNNAG00000008302	ENSNNAG00000008281	ENSNNAG00000008261	BPNT2 (ENSNNAG00000008231)	GALNT4 (ENSNNAG00000008216)	ENSNNAG00000008191	EHD3 (ENSNNAG00000008108)
Lizard	MODERN SPECIES	5	ZBTB47 (ENSACAG00000006705)	ENSACAG00000006735	HHATL (ENSACAG00000006760)	ENSACAG00000006787	ENSACAG00000043949	ENSACAG00000038888	ENSACAG00000039408	ENSACAG00000038024	OBSCN (ENSACAG00000006816) #17	ENSACAG00000006871	IBA57 (ENSACAG00000006874) #19	GJC2 (ENSACAG00000006876)	GUK1 (ENSACAG00000006879) #20	ENSACAG00000006897	ENSACAG00000040651	C1orf35 (ENSACAG00000006899) #22	ARF1 (ENSACAG00000006923) #23	WNT3A (ENSACAG00000040979) #24	ENSACAG00000012183	ENSACAG00000034573	NUB1 (ENSACAG00000012076)	ENSACAG00000036256	WDR86 (ENSACAG00000002245)	CRYGN (ENSACAG00000002251)	RHEB (ENSACAG00000038398)	PRKAG2 (ENSACAG00000002337)	ENSACAG00000037326	GALNT11 (ENSACAG00000014168)	KMT2C (ENSACAG00000014195)	XRCC2 (ENSACAG00000035126)	ENSACAG00000010629
Laterata	ANCESTRAL SPECIES	10	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B.j	ENSGT00940000153709.B.i	ENSGT00940000154756.A #17	ENSGT00940000166913	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000166800
Common wall lizard	MODERN SPECIES	3	ENSPMRG00000017859	KLHL40 (ENSPMRG00000017856)	HHATL (ENSPMRG00000017849)	ENSPMRG00000017843	ENSPMRG00000017835	ENSPMRG00000017827	ENSPMRG00000017824	ENSPMRG00000017370	ENSPMRG00000017361 #17	ENSPMRG00000017354	IBA57 (ENSPMRG00000017347) #19	GJC2 (ENSPMRG00000017345)	ENSPMRG00000017341	GUK1 (ENSPMRG00000017329) #20	ENSPMRG00000017319	C1orf35 (ENSPMRG00000017303) #22	ARF1 (ENSPMRG00000017293) #23	WNT3A (ENSPMRG00000017286) #24	WNT9A (ENSPMRG00000017281) #25	SNAP47 (ENSPMRG00000017275) #27	JMJD4 (ENSPMRG00000017270) #28	ALS2CL (ENSPMRG00000017261)	ENSPMRG00000017254	MYL3 (ENSPMRG00000017241)	PTH1R (ENSPMRG00000017227)	CCDC12 (ENSPMRG00000017214)	NBEAL2 (ENSPMRG00000016501)	ENSPMRG00000016324	ENSPMRG00000016319	ENSPMRG00000016314	SETD2 (ENSPMRG00000016302)
Argentine black and white tegu	MODERN SPECIES	5	HHATL (ENSSMRG00000016857)	CCDC13 (ENSSMRG00000016861)	HIGD1A (ENSSMRG00000016870)	ENSSMRG00000016871	ENSSMRG00000016872	ENSSMRG00000016874	OBSCN (ENSSMRG00000016892) #17	ENSSMRG00000016912	IBA57 (ENSSMRG00000016914) #19	GJC2 (ENSSMRG00000016916)	GUK1 (ENSSMRG00000016925) #20	ENSSMRG00000016927	TMEM42 (ENSSMRG00000016928)	KIF15 (ENSSMRG00000016931)	KIAA1143 (ENSSMRG00000016933)	C1orf35 (ENSSMRG00000016934) #22	ENSSMRG00000016936 ##23	WNT3A (ENSSMRG00000016949) #24	WNT9A (ENSSMRG00000016952) #25	ENSSMRG00000016954	SNAP47 (ENSSMRG00000016956) #27	JMJD4 (ENSSMRG00000016957) #28	ALS2CL (ENSSMRG00000016960)	ENSSMRG00000016967	MYL3 (ENSSMRG00000016969)	PTH1R (ENSSMRG00000016972)	CCDC12 (ENSSMRG00000016974)	NBEAL2 (ENSSMRG00000016986)	ENSSMRG00000016998	ENSSMRG00000016999	SETD2 (ENSSMRG00000017006)
tuatara	MODERN SPECIES	1269									ENSSPUG00000000769	ENSSPUG00000000763	ENSSPUG00000000760	ENSSPUG00000000745	ENSSPUG00000000742	GUK1 (ENSSPUG00000000738) #20	ENSSPUG00000000735	C1orf35 (ENSSPUG00000000694) #22	ARF1 (ENSSPUG00000000686) #23	WNT3A (ENSSPUG00000000676) #24	WNT9A (ENSSPUG00000000663) #25	SNAP47 (ENSSPUG00000000649) #27	JMJD4 (ENSSPUG00000000632) #28	ALS2CL (ENSSPUG00000000502)	ENSSPUG00000000482
Archelosauria	ANCESTRAL SPECIES	6	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000166800
Archosauria	ANCESTRAL SPECIES		ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000177473	ENSGT00940000154756.B ##17	ENSGT00940000154756.A #17	ENSGT00940000166913	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000166800
Aves	ANCESTRAL SPECIES	5	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #17	ENSGT00940000154756.B ##17	ENSGT00940000166913	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533
Neognathae	ANCESTRAL SPECIES		ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #17	ENSGT00940000154756.B ##17	ENSGT00940000166913	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533
Galloanserae	ANCESTRAL SPECIES		ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533
Anatidae	ANCESTRAL SPECIES	1	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Duck	MODERN SPECIES	10	KLHL40 (ENSAPLG00000012893)	NKTR (ENSAPLG00000012358)	HHATL (ENSAPLG00000013163)	CCDC13 (ENSAPLG00000013331)	ACKR2 (ENSAPLG00000000705)	ENSAPLG00000019155 ##17	ENSAPLG00000024143	ENSAPLG00000031005 #17	ENSAPLG00000026129 #17	ENSAPLG00000017812 #17	ENSAPLG00000020914 #17	ENSAPLG00000030118	GJC2 (ENSAPLG00000000708)	GUK1 (ENSAPLG00000004222) #20	ENSAPLG00000027242	C1orf35 (ENSAPLG00000004460) #22	ARF1 (ENSAPLG00000022202) #23	WNT3A (ENSAPLG00000004673) #24	CDC25A (ENSAPLG00000008300)	ENSAPLG00000028085	ENSAPLG00000028437	DHX30 (ENSAPLG00000015682)	SMARCC1 (ENSAPLG00000014937)	SCAP (ENSAPLG00000014099)	ENSAPLG00000020733	ENSAPLG00000030207	KLHL18 (ENSAPLG00000004276)	ENSAPLG00000022471	ENSAPLG00000004917	CCDC12 (ENSAPLG00000005482)	PTH1R (ENSAPLG00000005598)
Pink-footed goose	MODERN SPECIES	35	VIPR1 (ENSABRG00000001593)	SEC22C (ENSABRG00000001638)	NKTR (ENSABRG00000001684)	ZBTB47 (ENSABRG00000001728)	KLHL40 (ENSABRG00000001748)	HHATL (ENSABRG00000001773)	CCDC13 (ENSABRG00000001846)	HIGD1A (ENSABRG00000001881)	ACKR2 (ENSABRG00000001902)	CYP8B1 (ENSABRG00000001928)	ENSABRG00000002728	IBA57 (ENSABRG00000002749) #19	GJC2 (ENSABRG00000002777)	GUK1 (ENSABRG00000002795) #20	ENSABRG00000002808	C1orf35 (ENSABRG00000002825) #22	ARF1 (ENSABRG00000002849) #23	WNT3A (ENSABRG00000002868) #24	WNT9A (ENSABRG00000002871) #25	SNAP47 (ENSABRG00000002910) #27	JMJD4 (ENSABRG00000002916) #28	ALS2CL (ENSABRG00000002939)	ENSABRG00000003061	MYL3 (ENSABRG00000003074)	PTH1R (ENSABRG00000003090)	CCDC12 (ENSABRG00000003132)	NBEAL2 (ENSABRG00000003189)	ENSABRG00000003879	ENSABRG00000003891
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533
Japanese quail	MODERN SPECIES	11	NKTR (ENSCJPG00005010507)	ENSCJPG00005010508	ZBTB47 (ENSCJPG00005010509)	KLHL40 (ENSCJPG00005010510)	HHATL (ENSCJPG00005010511)	CCDC13 (ENSCJPG00005010525)	HIGD1A (ENSCJPG00005010526)	ACKR2 (ENSCJPG00005010527)	CYP8B1 (ENSCJPG00005010528)	ENSCJPG00005010530	ENSCJPG00005010531	IBA57 (ENSCJPG00005010532) #19	GJC2 (ENSCJPG00005010533)	GUK1 (ENSCJPG00005010534) #20	ENSCJPG00005010535	C1orf35 (ENSCJPG00005010536) #22	ARF1 (ENSCJPG00005010537) #23	WNT3A (ENSCJPG00005010538) #24	WNT9A (ENSCJPG00005010543) #25	SNAP47 (ENSCJPG00005010550) #27	JMJD4 (ENSCJPG00005010551) #28	ALS2CL (ENSCJPG00005010552)	ENSCJPG00005010554	MYL3 (ENSCJPG00005010555)	PTH1R (ENSCJPG00005010557)	CCDC12 (ENSCJPG00005010559)	ENSCJPG00005010567	SETD2 (ENSCJPG00005010568)	KIF9 (ENSCJPG00005010569)	KLHL18 (ENSCJPG00005010599)	CJ-CATH3 (ENSCJPG00005010622)
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533
Chicken	MODERN SPECIES	11	VIPR1 (ENSGALG00010027363)	SEC22C (ENSGALG00010027367)	NKTR (ENSGALG00010027374)	ZBTB47 (ENSGALG00010027378)	KLHL40 (ENSGALG00010027381)	HHATL (ENSGALG00010027384)	ENSGALG00010027387	HIGD1C (ENSGALG00010027707)	ACKR2 (ENSGALG00010027403)	OBSCN (ENSGALG00010025849) #17	ENSGALG00010025962	IBA57 (ENSGALG00010026030) #19	GJC2 (ENSGALG00010026011)	GUK1 (ENSGALG00010026040) #20	ENSGALG00010026064	C2H1orf35 (ENSGALG00010026076) #22	ARF1 (ENSGALG00010026097) #23	WNT3A (ENSGALG00010026141) #24	WNT9A (ENSGALG00010026166) #25	SNAP47 (ENSGALG00010024865) #27	JMJD4 (ENSGALG00010024874) #28	ALS2CL (ENSGALG00010024904)	ENSGALG00010024916	MYL3 (ENSGALG00010025568)	PTH2R (ENSGALG00010025577)	ENSGALG00010025584	CCDC12 (ENSGALG00010025606)	NBEAL2 (ENSGALG00010025645)	ENSGALG00010025671	ENSGALG00010025691	SETD2 (ENSGALG00010025723)
Turkey	MODERN SPECIES	26	VIPR1 (ENSMGAG00000001795)	SEC22C (ENSMGAG00000002268)	NKTR (ENSMGAG00000002292)	ZBTB47 (ENSMGAG00000002353)	ENSMGAG00000002375	HHATL (ENSMGAG00000002393)	CCDC13 (ENSMGAG00000002402)	HIGD1A (ENSMGAG00000002410)	ACKR2 (ENSMGAG00000002448)	ENSMGAG00000015992	ENSMGAG00000017782	IBA57 (ENSMGAG00000002535) #19	GJC2 (ENSMGAG00000002549)	GUK1 (ENSMGAG00000002569) #20	ENSMGAG00000018773	C1orf35 (ENSMGAG00000002619) #22	ARF1 (ENSMGAG00000002635) #23	WNT3A (ENSMGAG00000002648) #24	WNT9A (ENSMGAG00000010719) #25	SNAP47 (ENSMGAG00000002667) #27	JMJD4 (ENSMGAG00000002678) #28	ALS2CL (ENSMGAG00000002690)	ENSMGAG00000020342	MYL3 (ENSMGAG00000002731)	PTH1R (ENSMGAG00000002767)	CCDC12 (ENSMGAG00000002815)	NBEAL2 (ENSMGAG00000002828)	ENSMGAG00000020264	SETD2 (ENSMGAG00000002874)	KIF9 (ENSMGAG00000002896)	KLHL18 (ENSMGAG00000002927)
Neognathae_b	ANCESTRAL SPECIES	9	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #17	ENSGT00940000154756.B ##17	ENSGT00940000166913	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Neognathae_c	ANCESTRAL SPECIES	12	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #17	ENSGT00940000168031	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Golden eagle	MODERN SPECIES	19	ENSACCG00020012910	ENSACCG00020012929	ZBTB47 (ENSACCG00020012943)	KLHL40 (ENSACCG00020012966)	HHATL (ENSACCG00020013024)	CCDC13 (ENSACCG00020013054)	HIGD1A (ENSACCG00020013074)	ACKR2 (ENSACCG00020013098)	CYP8B1 (ENSACCG00020013113)	OBSCN (ENSACCG00020013522) #17	ENSACCG00020013855	IBA57 (ENSACCG00020013879) #19	GJC2 (ENSACCG00020013898)	GUK1 (ENSACCG00020013918) #20	ENSACCG00020013934	C1orf35 (ENSACCG00020013955) #22	ARF1 (ENSACCG00020013970) #23	WNT3A (ENSACCG00020013989) #24	WNT9A (ENSACCG00020014006) #25	SNAP47 (ENSACCG00020014024) #27	JMJD4 (ENSACCG00020014040) #28	ALS2CL (ENSACCG00020014088)	ENSACCG00020014178	MYL3 (ENSACCG00020014220)	ENSACCG00020014254	PTH1R (ENSACCG00020014276)	CCDC12 (ENSACCG00020014293)	ENSACCG00020014795	SETD2 (ENSACCG00020014831)	KIF9 (ENSACCG00020014934)	KLHL18 (ENSACCG00020015049)
Kakapo	MODERN SPECIES		NKTR (ENSSHBG00005003779)	ZBTB47 (ENSSHBG00005003771)	KLHL40 (ENSSHBG00005003760)	HHATL (ENSSHBG00005003739)	CCDC13 (ENSSHBG00005003724)	HIGD1A (ENSSHBG00005003716)	ACKR2 (ENSSHBG00005003711)	CYP8B1 (ENSSHBG00005003705)	ENSSHBG00005003697 #17	ENSSHBG00005003632 #17	ENSSHBG00005003593	IBA57 (ENSSHBG00005003583) #19	GJC2 (ENSSHBG00005003575)	GUK1 (ENSSHBG00005003565) #20	ENSSHBG00005003555	C1orf35 (ENSSHBG00005003549) #22	ARF1 (ENSSHBG00005003540) #23	WNT3A (ENSSHBG00005003522) #24	WNT9A (ENSSHBG00005003511) #25	SNAP47 (ENSSHBG00005003498) #27	JMJD4 (ENSSHBG00005003484) #28	ALS2CL (ENSSHBG00005003439)	ENSSHBG00005003404	MYL3 (ENSSHBG00005003389)	PTH1R (ENSSHBG00005003364)	CCDC12 (ENSSHBG00005003351)	ENSSHBG00005003101	ENSSHBG00005003081	SETD2 (ENSSHBG00005003069)	KIF9 (ENSSHBG00005003045)	KLHL18 (ENSSHBG00005003023)
Passeriformes	ANCESTRAL SPECIES		ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #17	ENSGT00940000154756.B ##17	ENSGT00940000166913	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618.g.a #25	ENSGT00940000159618.h #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00390000018786	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Great tit	MODERN SPECIES	11	SEC22C (ENSPMJG00000004290)	NKTR (ENSPMJG00000004257)	ZBTB47 (ENSPMJG00000004252)	KLHL40 (ENSPMJG00000004248)	HHATL (ENSPMJG00000004245)	CCDC13 (ENSPMJG00000004231)	HIGD1A (ENSPMJG00000004228)	ACKR2 (ENSPMJG00000004227)	CYP8B1 (ENSPMJG00000004221)	OBSCN (ENSPMJG00000004019) #17	ENSPMJG00000004007	IBA57 (ENSPMJG00000004004) #19	GJC2 (ENSPMJG00000004002)	GUK1 (ENSPMJG00000003992) #20	ENSPMJG00000003975	C1orf35 (ENSPMJG00000003973) #22	ARF1 (ENSPMJG00000003968) #23	ENSPMJG00000003967	WNT3A (ENSPMJG00000003960) #24	WNT9A (ENSPMJG00000003940) #25	ENSPMJG00000003920	CHPF2 (ENSPMJG00000003917)	ABCF2 (ENSPMJG00000003914)	H2BK1 (ENSPMJG00000003913)	ASB10 (ENSPMJG00000003911)	GBX1 (ENSPMJG00000003909)	AGAP3 (ENSPMJG00000003897)	ENSPMJG00000003896	TMUB1 (ENSPMJG00000003895)	FASTK (ENSPMJG00000003892)	SLC4A2 (ENSPMJG00000003885)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #17	ENSGT00940000154756.B ##17	ENSGT00940000166913	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618.g.a #25	ENSGT00940000159618.h #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00390000018786	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Passeriformes_g	ANCESTRAL SPECIES	6	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #17	ENSGT00940000154756.B ##17	ENSGT00940000166913	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618.g.a #25	ENSGT00940000159618.h #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00390000018786	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Medium ground finch	MODERN SPECIES	177	KLHL40 (ENSGFOG00000010820)	HHATL (ENSGFOG00000010830)	CCDC13 (ENSGFOG00000010846)	HIGD1A (ENSGFOG00000010858)	ACKR2 (ENSGFOG00000010862)	CYP8B1 (ENSGFOG00000010868)	ENSGFOG00000010871 #17	ENSGFOG00000010877 #17	ENSGFOG00000010884 #17	ENSGFOG00000010890 #17	ENSGFOG00000010923	IBA57 (ENSGFOG00000010927) #19	GJC2 (ENSGFOG00000010930)	GUK1 (ENSGFOG00000010932) #20	ENSGFOG00000010938	C1orf35 (ENSGFOG00000010942) #22	ARF1 (ENSGFOG00000010950) #23	WNT3A (ENSGFOG00000010955) #24
Passeroidea	ANCESTRAL SPECIES	6	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00960000193277.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618.g.a #25	ENSGT00940000159618.g.b #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00390000018786	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Zebra finch	MODERN SPECIES	12	HHATL (ENSTGUG00000000261)	CCDC13 (ENSTGUG00000000260)	HIGD1A (ENSTGUG00000019656)	ACKR2 (ENSTGUG00000000256)	CYP8B1 (ENSTGUG00000000254)	ENSTGUG00000027535 ##17	ENSTGUG00000020352 #17	ENSTGUG00000027931 ##17	ENSTGUG00000028042 #17	ENSTGUG00000022363	IBA57 (ENSTGUG00000000247) #19	ENSTGUG00000025629	GJC2 (ENSTGUG00000000246)	GUK1 (ENSTGUG00000000236) #20	ENSTGUG00000023071	ENSTGUG00000021273 #22	ARF1 (ENSTGUG00000000233) #23	WNT3A (ENSTGUG00000023348) #24	WNT9A (ENSTGUG00000026480) #25	SNAP47 (ENSTGUG00000000221) #27	JMJD4 (ENSTGUG00000000219) #28	ALS2CL (ENSTGUG00000000211)	ENSTGUG00000019396	ENSTGUG00000000210	MYL3 (ENSTGUG00000000207)	PTH1R (ENSTGUG00000000188)	CCDC12 (ENSTGUG00000022076)	ENSTGUG00000000173	SETD2 (ENSTGUG00000000164)	ENSTGUG00000000157	KLHL18 (ENSTGUG00000000150)
Common canary	MODERN SPECIES	5	ENSSCAG00000006150	ENSSCAG00000006143	ENSSCAG00000006137 #17	ENSSCAG00000006133 ##17	ENSSCAG00000006129 ##17	ENSSCAG00000006128 ##17	ENSSCAG00000006120 #17	ENSSCAG00000006118 #17	ENSSCAG00000006113	IBA57 (ENSSCAG00000006110) #19	GJC2 (ENSSCAG00000006108)	ENSSCAG00000006107	ENSSCAG00000006103	GUK1 (ENSSCAG00000006099) #20	ENSSCAG00000006094	C1orf35 (ENSSCAG00000006089) #22	ARF1 (ENSSCAG00000006081) #23	WNT3A (ENSSCAG00000006073) #24	ENSSCAG00000006067 #25	SNAP47 (ENSSCAG00000006057) #27	JMJD4 (ENSSCAG00000006051) #28	ALS2CL (ENSSCAG00000006041)	ENSSCAG00000006038	MYL3 (ENSSCAG00000006032)	ENSSCAG00000006023	ENSSCAG00000006020	SETD2 (ENSSCAG00000005718)	KIF9 (ENSSCAG00000005693)	KLHL18 (ENSSCAG00000005688)	ENSSCAG00000005671	ENSSCAG00000005668
Flycatcher	MODERN SPECIES	11	ENSFALG00000023109	ENSFALG00000001007	HHATL (ENSFALG00000001013)	ENSFALG00000029078	HIGD1A (ENSFALG00000001030)	ACKR2 (ENSFALG00000014706)	ENSFALG00000014720	ENSFALG00000028775	OBSCN (ENSFALG00000001046) #17	ENSFALG00000001076	IBA57 (ENSFALG00000023883) #19	GJC2 (ENSFALG00000014739)	GUK1 (ENSFALG00000001079) #20	ENSFALG00000001082	ENSFALG00000001084	C1orf35 (ENSFALG00000027612) #22	ARF1 (ENSFALG00000026573) ##23	WNT3A (ENSFALG00000001092) #24	WNT9A (ENSFALG00000026631) #25	SNAP47 (ENSFALG00000001100) #27	JMJD4 (ENSFALG00000001104) #28	ALS2CL (ENSFALG00000001110)	ENSFALG00000025140	MYL3 (ENSFALG00000005210)	PTH1R (ENSFALG00000005256)	ENSFALG00000029003	ENSFALG00000001918	ENSFALG00000027627	SETD2 (ENSFALG00000001922)	KIF9 (ENSFALG00000001936)	KLHL18 (ENSFALG00000001943)
Australian saltwater crocodile	MODERN SPECIES		ENSCPRG00005002437 #17	ENSCPRG00005002440	ENSCPRG00005002442 ##17	ENSCPRG00005002444 ##17	ENSCPRG00005002447 ##17	ENSCPRG00005002464 #17	ENSCPRG00005002468 #17	ENSCPRG00005002473 #17	ENSCPRG00005002477 #17	ENSCPRG00005002479 #17	ENSCPRG00005002481	IBA57 (ENSCPRG00005002483) #19	GJC2 (ENSCPRG00005002486)	GUK1 (ENSCPRG00005002512) #20	ENSCPRG00005002519	C1orf35 (ENSCPRG00005002524) #22	ARF1 (ENSCPRG00005002526) #23	WNT3A (ENSCPRG00005002546) #24	WNT9A (ENSCPRG00005002553) #25	ENSCPRG00005002586	SNAP47 (ENSCPRG00005002614) #27	JMJD4 (ENSCPRG00005002616) #28	ALS2CL (ENSCPRG00005002624)	ENSCPRG00005002674	MYL3 (ENSCPRG00005002730)	PTH1R (ENSCPRG00005002800)	ENSCPRG00005002835	NBEAL2 (ENSCPRG00005002905)	ENSCPRG00005002928	ENSCPRG00005002930	ENSCPRG00005002936
Cryptodira	ANCESTRAL SPECIES	4	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00940000159338.c	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A.ce.a.b #17	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Testudinidae	ANCESTRAL SPECIES	1	ENSGT00940000159338.c	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A.ce.a.b #17	ENSGT00390000003267	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Goode s thornscrub tortoise	MODERN SPECIES	11	SEC22C (ENSGEVG00005015191)	NKTR (ENSGEVG00005015149)	ZBTB47 (ENSGEVG00005015102)	KLHL40 (ENSGEVG00005015018)	HHATL (ENSGEVG00005014986)	CCDC13 (ENSGEVG00005014944)	HIGD1A (ENSGEVG00005014926)	ACKR2 (ENSGEVG00005014904)	CYP8B1 (ENSGEVG00005014888)	OBSCN (ENSGEVG00005012558) #17	ENSGEVG00005012335	IBA57 (ENSGEVG00005012316) #19	GJC2 (ENSGEVG00005012284)	GUK1 (ENSGEVG00005012265) #20	ENSGEVG00005012238	C1orf35 (ENSGEVG00005012210) #22	ARF1 (ENSGEVG00005012184) #23	WNT3A (ENSGEVG00005012137) #24	WNT9A (ENSGEVG00005012041) #25	ENSGEVG00005011986	SNAP47 (ENSGEVG00005011922) #27	JMJD4 (ENSGEVG00005011871) #28	ALS2CL (ENSGEVG00005011324)	ENSGEVG00005011228	MYL3 (ENSGEVG00005011154)	PTH1R (ENSGEVG00005011114)	CCDC12 (ENSGEVG00005011072)	NBEAL2 (ENSGEVG00005010756)	ENSGEVG00005010646	SETD2 (ENSGEVG00005010484)	KIF9 (ENSGEVG00005010334)
Abingdon island giant tortoise	MODERN SPECIES	163	ENSCABG00000014876	ENSCABG00000014871	ENSCABG00000014869	ENSCABG00000014867	ENSCABG00000014861	ENSCABG00000014859 #17	ENSCABG00000014858 #17	ENSCABG00000014855 #17	ENSCABG00000014851 #17	ENSCABG00000014848 #17	ENSCABG00000014846	IBA57 (ENSCABG00000014842) #19	GJC2 (ENSCABG00000014839)	GUK1 (ENSCABG00000014832) #20	ENSCABG00000014828	C1orf35 (ENSCABG00000014826) #22	ARF1 (ENSCABG00000014823) #23
Emydidae	ANCESTRAL SPECIES	35	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A.ce.a.a #17	ENSGT00390000003267	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Three-toed box turtle	MODERN SPECIES	48	ZBTB47 (ENSTMTG00000008346)	KLHL40 (ENSTMTG00000008321)	HHATL (ENSTMTG00000008279)	CCDC13 (ENSTMTG00000008247)	HIGD1A (ENSTMTG00000008234)	ENSTMTG00000008223	ENSTMTG00000008188 #17	ENSTMTG00000008168	ENSTMTG00000008161 #17	ENSTMTG00000008021 #17	ENSTMTG00000007970	IBA57 (ENSTMTG00000007959) #19	GJC2 (ENSTMTG00000007955)	GUK1 (ENSTMTG00000007938) #20	ENSTMTG00000007926	C1orf35 (ENSTMTG00000007919) #22	ARF1 (ENSTMTG00000007905) #23	WNT3A (ENSTMTG00000007868) #24	WNT9A (ENSTMTG00000007852) #25	ENSTMTG00000007845	SNAP47 (ENSTMTG00000007837) #27	JMJD4 (ENSTMTG00000007818) #28	ALS2CL (ENSTMTG00000007679)	ENSTMTG00000007651	MYL3 (ENSTMTG00000007625)	PTH1R (ENSTMTG00000007606)	CCDC12 (ENSTMTG00000007593)	NBEAL2 (ENSTMTG00000007411)	ENSTMTG00000007371	SETD2 (ENSTMTG00000007286)	KLHL18 (ENSTMTG00000007268)
painted turtle	MODERN SPECIES	749	ENSCPBG00000004337	ENSCPBG00000004311	ZBTB47 (ENSCPBG00000004296)	KLHL40 (ENSCPBG00000004071)	HHATL (ENSCPBG00000004042)	CCDC13 (ENSCPBG00000004012)	HIGD1A (ENSCPBG00000003994)	ACKR2 (ENSCPBG00000003986)	CYP8B1 (ENSCPBG00000003980)	OBSCN (ENSCPBG00000002168) #17	ENSCPBG00000001843	IBA57 (ENSCPBG00000001832) #19	GJC2 (ENSCPBG00000001821)	GUK1 (ENSCPBG00000001789) #20	ENSCPBG00000001771	C1orf35 (ENSCPBG00000001754) #22	ARF1 (ENSCPBG00000001732) #23	WNT3A (ENSCPBG00000001683) #24	WNT9A (ENSCPBG00000001669) #25	ENSCPBG00000001655	SNAP47 (ENSCPBG00000001637) #27	JMJD4 (ENSCPBG00000001622) #28	ALS2CL (ENSCPBG00000001553)	ENSCPBG00000001521	MYL3 (ENSCPBG00000001514)	PTH1R (ENSCPBG00000001485)
Chinese turtle	MODERN SPECIES	193											ENSPSIG00000011819	IBA57 (ENSPSIG00000011798) #19	GJC2 (ENSPSIG00000011379)	GUK1 (ENSPSIG00000011091) #20	ENSPSIG00000010893	C1orf35 (ENSPSIG00000010307) #22	ARF1 (ENSPSIG00000009767) #23	ENSPSIG00000009318	WNT9A (ENSPSIG00000009182) #25
Anura	ANCESTRAL SPECIES	11	ENSGT00940000157015	ENSGT00940000157362	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276.db	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465 #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT01010000229513
Leishan spiny toad	MODERN SPECIES	8	ENSLLEG00000027225	ENSLLEG00000027237	ENSLLEG00000027258	CDK5 (ENSLLEG00000027283)	ABCB8 (ENSLLEG00000027448)	ENSLLEG00000027617	ENSLLEG00000027722	ENSLLEG00000027808	VIPR1 (ENSLLEG00000027820)	ENSLLEG00000027866	ADCYAP1R1 (ENSLLEG00000027888)	AQP1 (ENSLLEG00000027945)	MINDY4 (ENSLLEG00000027995)	ENSLLEG00000028147	ENSLLEG00000028158	C1orf35 (ENSLLEG00000028170) #22	ARF1 (ENSLLEG00000028197) #23	ENSLLEG00000028228	WNT3A (ENSLLEG00000028256) #24	CCDC13 (ENSLLEG00000028404)	HHATL (ENSLLEG00000028559)	ZBTB47 (ENSLLEG00000028615)	KLHL40 (ENSLLEG00000028663)	ENSLLEG00000028684	ENSLLEG00000028696	ENSLLEG00000028703	ENSLLEG00000028711	GJC2 (ENSLLEG00000028718)	ENSLLEG00000028732	IBA57 (ENSLLEG00000028744) #19	ENSLLEG00000028761
Frog	MODERN SPECIES	6	klhl40 (ENSXETG00000006168)	hhatl (ENSXETG00000006167)	ccdc13 (ENSXETG00000006170)	higd1a (ENSXETG00000041403)	cyp8b1.1 (ENSXETG00000006173)	cyp8b1.2 (ENSXETG00000039690)	ENSXETG00000038405	gjc2 (ENSXETG00000006175)	iba57 (ENSXETG00000048247) #19	ENSXETG00000036804	obscn (ENSXETG00000041307) #17	ENSXETG00000041635	ENSXETG00000044508	guk1 (ENSXETG00000013914) #20	mrpl55 (ENSXETG00000036559)	c1orf35 (ENSXETG00000035070) #22	arf5 (ENSXETG00000013916) #23	wnt3a (ENSXETG00000034546)	ENSXETG00000047482	ENSXETG00000035178	ENSXETG00000043411	wnt9a (ENSXETG00000043746) #25	ENSXETG00000040131	ENSXETG00000045282	ENSXETG00000049480	snap47 (ENSXETG00000047672) #27	jmjd4 (ENSXETG00000003687) #28	als2cl (ENSXETG00000003686)	ENSXETG00000045251	pth1r (ENSXETG00000003683)	myl3 (ENSXETG00000003682)
Coelacanth	MODERN SPECIES	2847															JMJD4 (ENSLACG00000006626) #28	ENSLACG00000006249 #22	naprt (ENSLACG00000005367)	EEF1D (ENSLACG00000004419)	GFUS (ENSLACG00000001109)
Actinopterygii	ANCESTRAL SPECIES	313										ENSGT00390000003267	ENSGT00940000154756.A #17	ENSGT00940000154756.B ##17	ENSGT00940000168428	ENSGT00940000167421	ENSGT00940000155815 #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Neopterygii	ANCESTRAL SPECIES	275									ENSGT00390000003267	ENSGT00940000154756.A #17	ENSGT00940000154756.B ##17	ENSGT00940000168428	ENSGT00940000155815.p #20	ENSGT00940000167421	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Osteoglossocephalai	ANCESTRAL SPECIES	127	ENSGT00940000154681.a	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00970000196942	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795
Clupeocephala	ANCESTRAL SPECIES	105	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b	ENSGT00940000168601	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00970000196942	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795
Otomorpha	ANCESTRAL SPECIES	163			ENSGT01030000235558	ENSGT00940000161593.a	ENSGT01060000248962	ENSGT00510000047568	ENSGT00530000063106.A.t	ENSGT01030000234573.A.b.a.c	ENSGT00940000155665.b	ENSGT00520000055591.a.b	ENSGT00940000156906.j.b	ENSGT00530000063187.B.d	ENSGT00940000156259.a.b.b	ENSGT00940000158629	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795
Clupeiformes	ANCESTRAL SPECIES	92			ENSGT01030000235558	ENSGT00940000161593.a	ENSGT01060000248962	ENSGT00510000047568	ENSGT00530000063106.A.t	ENSGT01030000234573.A.b.a.c	ENSGT00940000155665.b	ENSGT00520000055591.a.b	ENSGT00940000156906.j.b	ENSGT00530000063187.B.d	ENSGT00940000156259.a.b.b	ENSGT00940000158629	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Denticle herring	MODERN SPECIES	14	ENSDCDG00000025979	ENSDCDG00000025936	ENSDCDG00000025935	ENSDCDG00000025931	eif2b5 (ENSDCDG00000025848)	ACAP2 (ENSDCDG00000022650)	DIS3L2 (ENSDCDG00000022324)	mier1b (ENSDCDG00000022310)	slc35d1b (ENSDCDG00000022302)	ENSDCDG00000022298	LRRC38 (ENSDCDG00000022292)	ENSDCDG00000021816	pik3r3a (ENSDCDG00000021780)	IPP (ENSDCDG00000021774)	guk1a (ENSDCDG00000021769) #20	zgc:63882 (ENSDCDG00000021762) #22	ARF1 (ENSDCDG00000021759) #23	wnt3a (ENSDCDG00000021752) #24	wnt9a (ENSDCDG00000021748) #25	snap47 (ENSDCDG00000021746) #27	jmjd4 (ENSDCDG00000021744) #28	iba57 (ENSDCDG00000021741) #19	gjc2 (ENSDCDG00000021739)	cyp8b1.2 (ENSDCDG00000021738)	ENSDCDG00000021730	ENSDCDG00000021722	tmie (ENSDCDG00000021716)	pth1r (ENSDCDG00000020195)	myl13 (ENSDCDG00000020133)	CRHR2 (ENSDCDG00000019988)	aqp1a.1 (ENSDCDG00000019982)
Atlantic herring	MODERN SPECIES	17	cbln2a (ENSCHAG00000011390)	NETO1 (ENSCHAG00000011425)	atpsckmt (ENSCHAG00000011430)	marchf6 (ENSCHAG00000011455)	ANKRD33B (ENSCHAG00000011899)	ctnnd2b (ENSCHAG00000011975)	GPR141 (ENSCHAG00000014733)	ENSCHAG00000014738	mier1b (ENSCHAG00000014757)	slc35d1b (ENSCHAG00000014776)	SERBP1 (ENSCHAG00000014992)	ENSCHAG00000015004	ENSCHAG00000015024	IPP (ENSCHAG00000015541)	guk1a (ENSCHAG00000015567) #20	zgc:63882 (ENSCHAG00000015610) #22	arf1 (ENSCHAG00000015617)	wnt3a (ENSCHAG00000015657) #24	wnt9a (ENSCHAG00000015715) #25	snap47 (ENSCHAG00000015750) #27	jmjd4 (ENSCHAG00000015760) #28	iba57 (ENSCHAG00000015805) #19	gjc2 (ENSCHAG00000015884)	cyp8b1.2 (ENSCHAG00000015889)	ENSCHAG00000015933	CCDC13 (ENSCHAG00000015940)	tmie (ENSCHAG00000015949)	pth1r (ENSCHAG00000015972)	myl13 (ENSCHAG00000016246)	CRHR2 (ENSCHAG00000016266)	aqp1a.1 (ENSCHAG00000016582)
Otophysi	ANCESTRAL SPECIES	194			ENSGT00940000161593.a	ENSGT01060000248962	ENSGT00510000047568	ENSGT00530000063106.A.t	ENSGT00940000179716	ENSGT01030000234573.A.b.a.c	ENSGT00940000155665.b	ENSGT00520000055591.a.b	ENSGT00940000156906.j.b	ENSGT00530000063187.B.d	ENSGT00940000156259.a.b.b	ENSGT00940000158629	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00940000165468	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Characiphysae	ANCESTRAL SPECIES	121		ENSGT00940000154843.F.c.a	ENSGT00940000161593.a	ENSGT01060000248962	ENSGT00510000047568	ENSGT00530000063106.A.t	ENSGT00940000179716	ENSGT01030000234573.A.b.a.c	ENSGT00940000155665.b	ENSGT00520000055591.a.b	ENSGT00970000195602	ENSGT00530000063187.B.d	ENSGT00940000156259.a.b.b	ENSGT00940000158629	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00940000165468	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795
Channel catfish	MODERN SPECIES	26						ENSIPUG00000006736	ENSIPUG00000006721	mmp14b (ENSIPUG00000006655)	si:ch211-14a17.11 (ENSIPUG00000006641)	pth1r (ENSIPUG00000006617)	tmie (ENSIPUG00000006597)	ENSIPUG00000006566	ENSIPUG00000006540	IPP (ENSIPUG00000006504)	guk1 (ENSIPUG00000006480) #20	zgc:63882 (ENSIPUG00000006390) #22	arf1 (ENSIPUG00000006311)	WNT3A (ENSIPUG00000006237) #24	WNT9A (ENSIPUG00000006207) #25	ENSIPUG00000006183	snap47 (ENSIPUG00000006150) #27	jmjd4 (ENSIPUG00000006140) #28	iba57 (ENSIPUG00000006129) #19	GJC1 (ENSIPUG00000006118)	CYP8B1 (ENSIPUG00000006112)	CYP8B1 (ENSIPUG00000006105)	CYP8B1 (ENSIPUG00000006096)	ENSIPUG00000006084	ENSIPUG00000006073	SERBP1 (ENSIPUG00000006028)	slc35d1b (ENSIPUG00000005991)
Characiphysae_b	ANCESTRAL SPECIES	197		ENSGT00940000154843.F.c.a	ENSGT00940000161593.a	ENSGT01060000248962	ENSGT00510000047568	ENSGT00530000063106.A.t	ENSGT00940000179716	ENSGT01030000234573.A.b.a.c	ENSGT00940000155665.b	ENSGT00520000055591.a.b	ENSGT00970000195602	ENSGT00530000063187.B.d	ENSGT00940000156259.a.b.b	ENSGT00940000158629	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00940000165468	ENSGT00940000160510 #24
Electric eel	MODERN SPECIES	549	ENSEEEG00000002316	ENSEEEG00000002317	ENSEEEG00000002318	eif2b5 (ENSEEEG00000002322)	ENSEEEG00000002360	DIS3L2 (ENSEEEG00000002383)	ENSEEEG00000002509	mier1b (ENSEEEG00000002510)	slc35d1b (ENSEEEG00000002516)	SERBP1 (ENSEEEG00000002520)	ENSEEEG00000002523	ENSEEEG00000002532	pik3r3a (ENSEEEG00000002550)	IPP (ENSEEEG00000002551)	guk1a (ENSEEEG00000002556) #20	zgc:63882 (ENSEEEG00000002558) #22	arf1 (ENSEEEG00000002560)	wnt3a (ENSEEEG00000002587) #24
Characoidei	ANCESTRAL SPECIES	325										ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000156259.a.b.b	ENSGT00940000158629	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00940000165468	ENSGT00940000160510 #24
Red-bellied piranha	MODERN SPECIES	1374													pik3r3a (ENSPNAG00000000100)	IPP (ENSPNAG00000000099)	guk1a (ENSPNAG00000007280) #20	zgc:63882 (ENSPNAG00000007279) #22	arf1 (ENSPNAG00000000098)	ENSPNAG00000000096
Mexicana tetra	MODERN SPECIES	51	ENSAMXG00000035986	ENSAMXG00000009741	ENSAMXG00000037889	ENSAMXG00000041566	ENSAMXG00000033322	ENSAMXG00000040630	ENSAMXG00000036257	ENSAMXG00000031654	ENSAMXG00000040964	ENSAMXG00000039584	ENSAMXG00000034524	cyp8b1.2 (ENSAMXG00000019923)	gjc2 (ENSAMXG00000030957)	IPP (ENSAMXG00000019888)	guk1a (ENSAMXG00000033762) #20	zgc:63882 (ENSAMXG00000030163) #22	arf1 (ENSAMXG00000019845)	wnt3a (ENSAMXG00000031704) #24	ENSAMXG00000043569	eif2b5 (ENSAMXG00000019751)	ENSAMXG00000042968	DIS3L2 (ENSAMXG00000019663)	ENSAMXG00000041454	mier1b (ENSAMXG00000042200)	slc35d1b (ENSAMXG00000036976)	ENSAMXG00000033266	ENSAMXG00000019616	ENSAMXG00000039090	iba57 (ENSAMXG00000033607) #19	jmjd4 (ENSAMXG00000019587) #28	snap47 (ENSAMXG00000019570) #27
Cyprinoidei	ANCESTRAL SPECIES	174								ENSGT00510000047568	ENSGT01060000248962	ENSGT00520000055591.a.b	ENSGT00940000156906.j.b	ENSGT00530000063187.B.d	ENSGT00940000156259.a.b.b	ENSGT00940000158629	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00940000165468	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT01020000230359.E
Cyprininae	ANCESTRAL SPECIES	165	ENSGT00940000154150.if	ENSGT00940000157354.j.a	ENSGT00940000154843.F.c.a.a	ENSGT00940000158574.c.b	ENSGT01030000234570.d.b.a.b.b.b.j	ENSGT00940000156795.f	ENSGT00940000157015.i.a.i	ENSGT00940000157015.i.b.b.a	ENSGT00390000016232.r	ENSGT00390000009615.r	ENSGT01030000234517.A.m	ENSGT00510000047568.b	ENSGT00530000063187.B.d	ENSGT00940000156259.a.b.b.a	ENSGT00940000155815.q.b #20	ENSGT00390000005590 #22	ENSGT00940000160510.c #24	ENSGT00940000159618.c #25	ENSGT00950000182843.b.h #27	ENSGT00940000159380.b #28	ENSGT00940000153709.B.y	ENSGT01020000230359.E.c	ENSGT00390000008041.B.e	ENSGT00950000182902.a.c.e	ENSGT00390000001114.d	ENSGT00940000155117.f.b.d.b	ENSGT00940000158746.i	ENSGT00940000155918.c.b.a	ENSGT00940000164792.b.b	ENSGT00940000164792.b.a	ENSGT00940000155406.h.d
Goldfish	MODERN SPECIES	11	myl13 (ENSCARG00000048731)	CRHR2 (ENSCARG00000048814)	ENSCARG00000049159	aqp1a.1 (ENSCARG00000049175)	aqp1a.2 (ENSCARG00000049277)	thoc1 (ENSCARG00000049321)	usp14 (ENSCARG00000049551)	rock1 (ENSCARG00000051534)	eif2b5 (ENSCARG00000053639)	ENSCARG00000054353	ENSCARG00000054363	ENSCARG00000054409	ENSCARG00000054457	pik3r3a (ENSCARG00000054631)	guk1a (ENSCARG00000054639) #20	zgc:63882 (ENSCARG00000054703) #22
Cyprininae_a	ANCESTRAL SPECIES	238			ENSGT00940000158574.c.b	ENSGT01030000234570.d.b.a.b.b.b.j	ENSGT00940000156795.f	ENSGT00940000157015.i.a.i	ENSGT00940000157015.i.b.b.a	ENSGT00390000016232.r	ENSGT00390000009615.r	ENSGT01030000234517.A.m	ENSGT00510000047568.b	ENSGT00940000156906.j.b	ENSGT00530000063187.B.d	ENSGT00940000156259.a.b.b.a	ENSGT00940000155815.q.b #20	ENSGT00390000005590 #22	ENSGT00940000160510.c #24	ENSGT00940000159618.c #25	ENSGT00950000182843.b.h #27	ENSGT00940000159380.a.b #28	ENSGT00390000006465.d #19	ENSGT01090000260005.a.a.a.b.a.a.a.b	ENSGT00940000153709.B.z.b	ENSGT01020000230359.E.c	ENSGT00390000008041.B.e	ENSGT00950000182902.a.c.e	ENSGT00390000001114.d	ENSGT00940000155117.f.b.d.b	ENSGT00940000158746.i	ENSGT00940000155918.c.b.a	ENSGT00940000164792.b.a
Common carp reference	MODERN SPECIES	21	higd1a (ENSCCRG00000061634)	ENSCCRG00000064351	tmie (ENSCCRG00000061065)	pth1r (ENSCCRG00000000322)	myl13 (ENSCCRG00000077228)	ENSCCRG00000007405	aqp1a.1 (ENSCCRG00000063379)	aqp1a.2 (ENSCCRG00000068182)	thoc1 (ENSCCRG00000007373)	usp14 (ENSCCRG00000005390)	rock1 (ENSCCRG00000009725)	ENSCCRG00000013420	ENSCCRG00000013424	pik3r3a (ENSCCRG00000013431)	guk1a (ENSCCRG00000013449) #20	zgc:63882 (ENSCCRG00000013674) #22	ARF1 (ENSCCRG00000013678) ##23	wnt3a (ENSCCRG00000073868) #24	wnt9a (ENSCCRG00000058872) #25	snap47 (ENSCCRG00000002315) #27	jmjd4 (ENSCCRG00000034839) #28	iba57 (ENSCCRG00000034941) #19	ENSCCRG00000062331	ENSCCRG00000053488	greb1l (ENSCCRG00000035096)	abhd3 (ENSCCRG00000033078)	ENSCCRG00000043274	cdc73 (ENSCCRG00000036939)	ENSCCRG00000037111	ENSCCRG00000058156	ENSCCRG00000007043
Golden-line barbel	MODERN SPECIES	626																zgc:63882 (ENSSGRG00000048205) #22	wnt3a (ENSSGRG00000048207) #24	wnt9a (ENSSGRG00000048213) #25	snap47 (ENSSGRG00000048214) #27	iba57 (ENSSGRG00000048216) #19	gjc2 (ENSSGRG00000048217)	CYP8B1 (ENSSGRG00000048218)	ENSSGRG00000048219	greb1l (ENSSGRG00000048220)	abhd3 (ENSSGRG00000048225)	cdc73 (ENSSGRG00000048235)	ENSSGRG00000048238	GPR158 (ENSSGRG00000048239)	prtfdc1b (ENSSGRG00000048255)	ARHGAP21 (ENSSGRG00000048272)	dpp6b (ENSSGRG00000048879)
Zebrafish	MODERN SPECIES	11	myl13 (ENSDARG00000042245)	crhr2 (ENSDARG00000103704)	CRHR2 (ENSDARG00000062377)	ENSDARG00000114019	ENSDARG00000087421	aqp1a.1 (ENSDARG00000023713)	aqp1a.2 (ENSDARG00000091027)	thoc1 (ENSDARG00000088246)	usp14 (ENSDARG00000025889)	rock1 (ENSDARG00000058993)	eif2b5 (ENSDARG00000074995)	ENSDARG00000099937	ENSDARG00000101799	pik3r3a (ENSDARG00000103038)	guk1a (ENSDARG00000030340) #20	C2H1orf35 (ENSDARG00000004525) #22	arf1 (ENSDARG00000009484)	wnt3a (ENSDARG00000058822) #24	wnt9a (ENSDARG00000063437) #25	snap47 (ENSDARG00000063445) #27	jmjd4 (ENSDARG00000058995) #28	iba57 (ENSDARG00000063446) #19	ACKR2 (ENSDARG00000086314)	cyp8b1.1 (ENSDARG00000053068)	cyp8b1.2 (ENSDARG00000097556)	cyp8b1.3 (ENSDARG00000097559)	gjc2 (ENSDARG00000073896)	SERP1 (ENSDARG00000076223)	ENSDARG00000079730	gpt (ENSDARG00000019541)	c1ql3b (ENSDARG00000036483)
Euteleosteomorpha	ANCESTRAL SPECIES	10	ENSGT01100000263569.a.a	ENSGT01030000234528.B.b.a.a.a.c.b	ENSGT00940000165535	ENSGT00940000168601	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00970000196942	ENSGT00940000177473	ENSGT00940000177117	ENSGT00940000154756.A #17	ENSGT00940000168428.b.b.a	ENSGT00940000154756.B ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00940000165468	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795
Acanthomorphata	ANCESTRAL SPECIES		ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00970000196942	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00940000165468	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00940000159905	ENSGT01030000238439	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00970000196942	ENSGT00940000154756.B.u.b ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000168428.b.b.a	ENSGT00940000177473	ENSGT00940000154756.B.v ##17	ENSGT00940000168428.b.b.b	ENSGT00940000168428.a	ENSGT00940000178390	ENSGT00940000154756.B.u.a ##17	ENSGT00940000154756.B.u.b ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.B.u.b ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000177473	ENSGT00940000154756.B.v ##17	ENSGT00940000168428.b.a	ENSGT00940000177117	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000177473	ENSGT00940000154756.B.v ##17	ENSGT00940000177117	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Carangaria	ANCESTRAL SPECIES	5	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT01030000234528.B.b.a.a.a.c.a	ENSGT01030000234528.B.b.a.a.a.c.b	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Seriola	ANCESTRAL SPECIES		ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000168428.b.b.a	ENSGT00940000154756.B.v ##17	ENSGT00940000177117	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a	ENSGT00940000157015.i.b.a
Greater amberjack	MODERN SPECIES	99	asb10 (ENSSDUG00000017671)	zgc:92591 (ENSSDUG00000017571)	ENSSDUG00000017561	asic1c (ENSSDUG00000017542)	cdk5 (ENSSDUG00000017508)	abcb8 (ENSSDUG00000017474)	ENSSDUG00000017448	ENSSDUG00000017429 #17	ENSSDUG00000017420 #17	ENSSDUG00000017412 #17	ENSSDUG00000017391 ##17	ENSSDUG00000017384	ENSSDUG00000017370 #17	ENSSDUG00000017345 #17	guk1a (ENSSDUG00000017302) #20	zgc:63882 (ENSSDUG00000017274) #22	ENSSDUG00000017254 ##23	wnt3a (ENSSDUG00000017246) #24	wnt9a (ENSSDUG00000017231) #25	snap47 (ENSSDUG00000017216) #27	jmjd4 (ENSSDUG00000017200) #28	iba57 (ENSSDUG00000017191) #19	gjc2 (ENSSDUG00000017183)	HIGD1A (ENSSDUG00000017144)	ENSSDUG00000017107	tmie (ENSSDUG00000017093)	ENSSDUG00000017086	pth1r (ENSSDUG00000016977)	myl13 (ENSSDUG00000016961)	CRHR2 (ENSSDUG00000016946)	aqp1a.1 (ENSSDUG00000016906)
Yellowtail amberjack	MODERN SPECIES	2638	GBX1 (ENSSLDG00000013509)	asb10 (ENSSLDG00000013521)	zgc:92591 (ENSSLDG00000013535)	asic1c (ENSSLDG00000013563)	cdk5 (ENSSLDG00000013609)	abcb8 (ENSSLDG00000013646)	atg9b (ENSSLDG00000013737)	ENSSLDG00000013764 #17	ENSSLDG00000013785 ##17	ENSSLDG00000013810	ENSSLDG00000013825	ENSSLDG00000013840 ##17	ENSSLDG00000013851	ENSSLDG00000013874 ##17	guk1a (ENSSLDG00000013903) #20	zgc:63882 (ENSSLDG00000013938) #22	ENSSLDG00000013951 ##23	wnt3a (ENSSLDG00000013961) #24	wnt9a (ENSSLDG00000014002) #25	snap47 (ENSSLDG00000014027) #27	jmjd4 (ENSSLDG00000014043) #28	iba57 (ENSSLDG00000014059) #19	gjc2 (ENSSLDG00000014076)	HIGD1A (ENSSLDG00000014111)	ENSSLDG00000014119	tmie (ENSSLDG00000014142)	pth1r (ENSSLDG00000014154)	myl13 (ENSSLDG00000014203)	CRHR2 (ENSSLDG00000014223)	aqp1a.1 (ENSSLDG00000014278)	ENSSLDG00000014591
Barramundi perch	MODERN SPECIES	69	pcmtd1 (ENSLCAG00010005197)	ST18 (ENSLCAG00010005184)	RB1CC1 (ENSLCAG00010005128)	ENSLCAG00010005091	AGAP3 (ENSLCAG00010004970)	gbx1 (ENSLCAG00010004902)	asb10 (ENSLCAG00010004897)	zgc:92591 (ENSLCAG00010004894)	ENSLCAG00010004878	ENSLCAG00010004858	cdk5 (ENSLCAG00010004830)	abcb8 (ENSLCAG00010004603)	atg9b (ENSLCAG00010004522)	ENSLCAG00010004515	ENSLCAG00010004502 #17	zgc:63882 (ENSLCAG00010004493) #22	ENSLCAG00010004471 ##23	guk1a (ENSLCAG00010004457) #20	wnt3a (ENSLCAG00010004433) #24	wnt9a (ENSLCAG00010004419) #25	snap47 (ENSLCAG00010004413) #27	iba57 (ENSLCAG00010004408) #19	jmjd4 (ENSLCAG00010004400) #28	gjc2 (ENSLCAG00010004391)	CYP8B1 (ENSLCAG00010004385)	HIGD1A (ENSLCAG00010004378)	ENSLCAG00010004376	tmie (ENSLCAG00010004361)	pth1r (ENSLCAG00010004183)	myl13 (ENSLCAG00010004118)	CRHR2 (ENSLCAG00010003861)
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000168428.b.b.a	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Turbot	MODERN SPECIES	19	ENSSMAG00000023249	pcmtd1 (ENSSMAG00000019275)	ENSSMAG00000019253	RB1CC1 (ENSSMAG00000019193)	AGAP3 (ENSSMAG00000019184)	gbx1 (ENSSMAG00000019176)	asb10 (ENSSMAG00000019166)	zgc:92591 (ENSSMAG00000019080)	ENSSMAG00000025562	asic1c (ENSSMAG00000019049)	cdk5 (ENSSMAG00000019009)	ENSSMAG00000018981	atg9b (ENSSMAG00000018960)	ENSSMAG00000018861 #17	GUK1 (ENSSMAG00000018836) #20	zgc:63882 (ENSSMAG00000018814) #22	ENSSMAG00000018796 ##23	wnt3a (ENSSMAG00000018775) #24	wnt9a (ENSSMAG00000018760) #25	snap47 (ENSSMAG00000018755) #27	jmjd4 (ENSSMAG00000018731) #28	iba57 (ENSSMAG00000018740) #19	ENSSMAG00000018725	cyp8b1.1 (ENSSMAG00000024609)	ENSSMAG00000018710	ENSSMAG00000018685	tmie (ENSSMAG00000018676)	pth1r (ENSSMAG00000018658)	myl13 (ENSSMAG00000018615)	ENSSMAG00000018589	aqp1a.1 (ENSSMAG00000018577)
Tongue sole	MODERN SPECIES	12	ssx2ipa (ENSCSEG00000011993)	ENSCSEG00000012001	MCOLN3 (ENSCSEG00000012017)	ENSCSEG00000012047	ENSCSEG00000012051	ift22 (ENSCSEG00000012071)	kiss1ra (ENSCSEG00000012092)	atp6v0b (ENSCSEG00000012132)	b4galt2 (ENSCSEG00000012148)	ENSCSEG00000012182	zgc:113531 (ENSCSEG00000012201)	ENSCSEG00000012213	them6 (ENSCSEG00000012235)	si:ch73-52e5.2 (ENSCSEG00000012241)	guk1a (ENSCSEG00000012246) #20	zgc:63882 (ENSCSEG00000012269) #22	ENSCSEG00000012285 ##23	wnt3a (ENSCSEG00000012289) #24	wnt9a (ENSCSEG00000012297) #25	snap47 (ENSCSEG00000012311) #27	jmjd4 (ENSCSEG00000012318) #28	iba57 (ENSCSEG00000012331) #19	gjc2 (ENSCSEG00000012339)	cyp8b1.2 (ENSCSEG00000012341)	ENSCSEG00000012349	ENSCSEG00000012352	tmie (ENSCSEG00000012362)	pth1r (ENSCSEG00000012371)	myl13 (ENSCSEG00000012384)	CRHR2 (ENSCSEG00000012395)	aqp1 (ENSCSEG00000012440)
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Zig-zag eel	MODERN SPECIES	8	pcmtd1 (ENSMAMG00000015683)	ENSMAMG00000015700	ENSMAMG00000026024	RB1CC1 (ENSMAMG00000015728)	AGAP3 (ENSMAMG00000015816)	gbx1 (ENSMAMG00000015894)	asb10 (ENSMAMG00000015919)	zgc:92591 (ENSMAMG00000015956)	ENSMAMG00000015963	ENSMAMG00000015966	ENSMAMG00000015979	cdk5 (ENSMAMG00000016001)	ENSMAMG00000016011	atg9b (ENSMAMG00000016043)	GUK1 (ENSMAMG00000016176) #20	C1orf35 (ENSMAMG00000016191) #22	ARF1 (ENSMAMG00000026228) ##23	wnt3a (ENSMAMG00000025289) #24	wnt9a (ENSMAMG00000024682) #25	snap47 (ENSMAMG00000016251) #27	jmjd4 (ENSMAMG00000016257) #28	iba57 (ENSMAMG00000016285) #19	ENSMAMG00000016289	cyp8b1.1 (ENSMAMG00000016300)	ENSMAMG00000016327	ENSMAMG00000016340	pth1r (ENSMAMG00000026542)	myl13 (ENSMAMG00000027585)	ENSMAMG00000016423	aqp1a.1 (ENSMAMG00000016677)	ENSMAMG00000016691
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Climbing perch	MODERN SPECIES	8	snai2 (ENSATEG00000006892)	SNTG1 (ENSATEG00000006872)	pcmtd1 (ENSATEG00000006834)	ENSATEG00000029591	RB1CC1 (ENSATEG00000006655)	AGAP3 (ENSATEG00000006574)	gbx1 (ENSATEG00000028764)	asb10 (ENSATEG00000006447)	zgc:92591 (ENSATEG00000006171)	asic1c (ENSATEG00000006062)	cdk5 (ENSATEG00000005993)	ENSATEG00000005929	atg9b (ENSATEG00000005911)	ENSATEG00000005687 ##17	GUK1 (ENSATEG00000027879) #20	C1orf35 (ENSATEG00000005635) #22	ARF1 (ENSATEG00000001951) ##23	wnt3a (ENSATEG00000005584) #24	wnt9a (ENSATEG00000005551) #25	snap47 (ENSATEG00000030148) #27	jmjd4 (ENSATEG00000005536) #28	iba57 (ENSATEG00000025675) #19	ENSATEG00000025525	cyp8b1.1 (ENSATEG00000005479)	ENSATEG00000005470	ENSATEG00000005460	tmie (ENSATEG00000005437)	pth1r (ENSATEG00000005394)	myl13 (ENSATEG00000005368)	ENSATEG00000004965	aqp1a.1 (ENSATEG00000004913)
Siamese fighting fish	MODERN SPECIES	8	RB1CC1 (ENSBSLG00000022306)	AGAP3 (ENSBSLG00000022486)	gbx1 (ENSBSLG00000022901)	asb10 (ENSBSLG00000022907)	zgc:92591 (ENSBSLG00000022917)	asic1c (ENSBSLG00000022942)	cdk5 (ENSBSLG00000023063)	ENSBSLG00000023102	ENSBSLG00000023120	abcb8 (ENSBSLG00000023174)	atg9b (ENSBSLG00000023448)	ENSBSLG00000023479 #17	ENSBSLG00000023505	ENSBSLG00000023512 #17	guk1a (ENSBSLG00000023536) #20	zgc:63882 (ENSBSLG00000023546) #22	ENSBSLG00000023555 ##23	wnt3a (ENSBSLG00000023563) #24	wnt9a (ENSBSLG00000023589) #25	snap47 (ENSBSLG00000023611) #27	jmjd4 (ENSBSLG00000023617) #28	iba57 (ENSBSLG00000023623) #19	gjc2 (ENSBSLG00000023626)	ENSBSLG00000023632	ENSBSLG00000023633	ENSBSLG00000023644	ENSBSLG00000023645	ENSBSLG00000023653	tmie (ENSBSLG00000023661)	pth1r (ENSBSLG00000023679)	myl13 (ENSBSLG00000023835)
Eupercaria	ANCESTRAL SPECIES	24	ENSGT01030000238439	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000168428.b.b.a	ENSGT00940000177117	ENSGT00940000154756.B.v ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Tetraodontidae	ANCESTRAL SPECIES	30	ENSGT00740000115534.a.b	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Fugu	MODERN SPECIES	14	ube2v2 (ENSTRUG00000006972)	snai2 (ENSTRUG00000025588)	SNTG1 (ENSTRUG00000006540)	pcmtd1 (ENSTRUG00000023062)	ST18 (ENSTRUG00000006078)	RB1CC1 (ENSTRUG00000005744)	AGAP3 (ENSTRUG00000005543)	gbx1 (ENSTRUG00000005470)	asb10 (ENSTRUG00000005244)	zgc:92591 (ENSTRUG00000020180)	asic1c (ENSTRUG00000004514)	cdk5 (ENSTRUG00000004034)	abcb8 (ENSTRUG00000003209)	atg9b (ENSTRUG00000002303)	guk1 (ENSTRUG00000014441) #20	zgc:63882 (ENSTRUG00000014402) #22	arf2b (ENSTRUG00000014380) ##23	wnt3a (ENSTRUG00000014272) #24	wnt9a (ENSTRUG00000014101) #25	snap47 (ENSTRUG00000014070) #27	jmjd4 (ENSTRUG00000022722) #28	iba57 (ENSTRUG00000021920) #19	gjc2 (ENSTRUG00000014012)	CYP8B1 (ENSTRUG00000030959)	CYP8B1 (ENSTRUG00000029022)	CYP8B1 (ENSTRUG00000024163)	higd1a (ENSTRUG00000013991)	ENSTRUG00000027905	tmie (ENSTRUG00000013972)	pth1r (ENSTRUG00000013866)	myl3 (ENSTRUG00000013808)
Tetraodon	MODERN SPECIES	7	pcmtd1 (ENSTNIG00000008502)	ST18 (ENSTNIG00000008501)	RB1CC1 (ENSTNIG00000008500)	AGAP3 (ENSTNIG00000008499)	gbx1 (ENSTNIG00000008498)	asb10 (ENSTNIG00000008497)	zgc:92591 (ENSTNIG00000008496)	asic1c (ENSTNIG00000008495)	ENSTNIG00000001162	ENSTNIG00000008494	abcb8 (ENSTNIG00000008493)	atg9b (ENSTNIG00000008492)	ENSTNIG00000008490 #17	guk1a (ENSTNIG00000008491) #20	guk1a (ENSTNIG00000008489) #20	zgc:63882 (ENSTNIG00000008488) #22	wnt3a (ENSTNIG00000008487) #24	wnt9a (ENSTNIG00000008486) #25	snap47 (ENSTNIG00000008485) #27	jmjd4 (ENSTNIG00000008484) #28	iba57 (ENSTNIG00000008483) #19	gjc2 (ENSTNIG00000008482)	ENSTNIG00000008481	CYP8B1 (ENSTNIG00000008480)	HIGD1A (ENSTNIG00000001241)	ENSTNIG00000008479	tmie (ENSTNIG00000008478)	pth1r (ENSTNIG00000008477)	myl13 (ENSTNIG00000008476)	CRHR2 (ENSTNIG00000000184)	CYP8B1 (ENSTNIG00000008475)
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT01030000238439	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000168428.b.b.a	ENSGT00940000177117	ENSGT00940000154756.B.v ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Ballan wrasse	MODERN SPECIES	336	gbx1 (ENSLBEG00000001309)	asb10 (ENSLBEG00000001325)	zgc:92591 (ENSLBEG00000001382)	ENSLBEG00000001405	ENSLBEG00000001420	cdk5 (ENSLBEG00000001455)	abcb8 (ENSLBEG00000001537)	ENSLBEG00000001624	ENSLBEG00000001649 #17	ENSLBEG00000001687 #17	ENSLBEG00000001714 #17	ENSLBEG00000001816	ENSLBEG00000001837	ENSLBEG00000001872 #17	guk1a (ENSLBEG00000001931) #20	zgc:63882 (ENSLBEG00000001982) #22	arf1 (ENSLBEG00000001998)	wnt3a (ENSLBEG00000002020) #24
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000154756.B.v ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT00940000154511.b	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Gilthead seabream	MODERN SPECIES	13	ube2v2 (ENSSAUG00010006759)	snai2 (ENSSAUG00010006755)	SNTG1 (ENSSAUG00010006754)	pcmtd1 (ENSSAUG00010006752)	ENSSAUG00010006749	RB1CC1 (ENSSAUG00010006685)	AGAP3 (ENSSAUG00010003720)	gbx1 (ENSSAUG00010003647)	asb10 (ENSSAUG00010003644)	zgc:92591 (ENSSAUG00010003641)	asic1c (ENSSAUG00010003193)	cdk5 (ENSSAUG00010003127)	abcb8 (ENSSAUG00010002978)	atg9b (ENSSAUG00010002962)	ENSSAUG00010002946 #17	zgc:63882 (ENSSAUG00010002941) #22	guk1a (ENSSAUG00010002929) #20	wnt3a (ENSSAUG00010002897) #24	wnt9a (ENSSAUG00010002844) #25	snap47 (ENSSAUG00010002815) #27	jmjd4 (ENSSAUG00010002799) #28	iba57 (ENSSAUG00010023536) #19	gjc2 (ENSSAUG00010023535)	cyp8b1.2 (ENSSAUG00010023534)	HIGD1A (ENSSAUG00010023533)	ENSSAUG00010023531	tmie (ENSSAUG00010023529)	pth1r (ENSSAUG00010023506)	myl13 (ENSSAUG00010023495)	CRHR2 (ENSSAUG00010023148)	AQP1 (ENSSAUG00010023120)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00940000154511.b	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
European seabass	MODERN SPECIES		SNAI2 (ENSDLAG00005025886)	SNTG1 (ENSDLAG00005025887)	pcmtd1 (ENSDLAG00005025888)	ST18 (ENSDLAG00005025891)	RB1CC1 (ENSDLAG00005025897)	AGAP3 (ENSDLAG00005025915)	gbx1 (ENSDLAG00005026693)	asb10 (ENSDLAG00005025956)	zgc:92591 (ENSDLAG00005021322)	asic1c (ENSDLAG00005025961)	cdk5 (ENSDLAG00005025973)	ENSDLAG00005025991	atg9b (ENSDLAG00005026009)	ENSDLAG00005026018 #17	GUK1 (ENSDLAG00005026026) #20	C1orf35 (ENSDLAG00005030355) #22	ENSDLAG00005033446 ##23	wnt3a (ENSDLAG00005026033) #24	wnt9a (ENSDLAG00005026035) #25	snap47 (ENSDLAG00005026038) #27	jmjd4 (ENSDLAG00005026039) #28	pth1r (ENSDLAG00005028827)	ENSDLAG00005030746	ENSDLAG00005002661	tmie (ENSDLAG00005002754)	myl13 (ENSDLAG00005003140)	ENSDLAG00005030068	ENSDLAG00005026637	aqp1a.1 (ENSDLAG00005005353)	ENSDLAG00005029462	aqp1a.2 (ENSDLAG00005028540)
Large yellow croaker	MODERN SPECIES	1	mcm4 (ENSLCRG00005000475)	ube2v2 (ENSLCRG00005000466)	SNAI2 (ENSLCRG00005000465)	SNTG1 (ENSLCRG00005000463)	pcmtd1 (ENSLCRG00005000459)	RB1CC1 (ENSLCRG00005000402)	AGAP3 (ENSLCRG00005000222)	gbx1 (ENSLCRG00005000099)	asb10 (ENSLCRG00005000087)	zgc:92591 (ENSLCRG00005019609)	asic1c (ENSLCRG00005019590)	cdk5 (ENSLCRG00005019567)	abcb8 (ENSLCRG00005019519)	atg9b (ENSLCRG00005019515)	guk1a (ENSLCRG00005019504) #20	zgc:63882 (ENSLCRG00005019501) #22	ENSLCRG00005019500 ##23	wnt3a (ENSLCRG00005019495) #24	wnt9a (ENSLCRG00005019494) #25	snap47 (ENSLCRG00005019493) #27	jmjd4 (ENSLCRG00005019492) #28	iba57 (ENSLCRG00005019491) #19	gjc2 (ENSLCRG00005019490)	CYP8B1 (ENSLCRG00005019488)	HIGD1A (ENSLCRG00005019487)	ENSLCRG00005019484	tmie (ENSLCRG00005019482)	pth1r (ENSLCRG00005019470)	myl13 (ENSLCRG00005019468)	CRHR2 (ENSLCRG00005018677)	aqp1a.1 (ENSLCRG00005018666)
Perciformes	ANCESTRAL SPECIES	5	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000154756.B.v ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Perciformes_a	ANCESTRAL SPECIES	17	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Channel bull blenny	MODERN SPECIES	8	SNTG1 (ENSCGOG00000003844)	pcmtd1 (ENSCGOG00000003837)	ST18 (ENSCGOG00000003832)	RB1CC1 (ENSCGOG00000003090)	AGAP3 (ENSCGOG00000002284)	gbx1 (ENSCGOG00000002264)	ENSCGOG00000002263	asb10 (ENSCGOG00000002262)	zgc:92591 (ENSCGOG00000002261)	asic1c (ENSCGOG00000002255)	cdk5 (ENSCGOG00000002062)	abcb8 (ENSCGOG00000002017)	atg9b (ENSCGOG00000002008)	ENSCGOG00000002005 #17	guk1a (ENSCGOG00000002003) #20	zgc:63882 (ENSCGOG00000002002) #22	ENSCGOG00000001978 ##23	wnt3a (ENSCGOG00000001974) #24	wnt9a (ENSCGOG00000001970) #25	snap47 (ENSCGOG00000001968) #27	iba57 (ENSCGOG00000001966) #19	jmjd4 (ENSCGOG00000001963) #28	gjc2 (ENSCGOG00000001961)	cyp8b1.2 (ENSCGOG00000001953)	HIGD1A (ENSCGOG00000001945)	ENSCGOG00000001939	tmie (ENSCGOG00000001936)	pth1r (ENSCGOG00000001928)	myl13 (ENSCGOG00000001925)	CRHR2 (ENSCGOG00000001764)	aqp1a.1 (ENSCGOG00000001718)
Pike perch	MODERN SPECIES	12	pcmtd1 (ENSSLUG00000000835)	ENSSLUG00000000831	ENSSLUG00000000830	RB1CC1 (ENSSLUG00000000803)	AGAP3 (ENSSLUG00000000399)	gbx1 (ENSSLUG00000000221)	asb10 (ENSSLUG00000000218)	zgc:92591 (ENSSLUG00000000212)	asic1c (ENSSLUG00000000195)	cdk5 (ENSSLUG00000000174)	abcb8 (ENSSLUG00000019021)	atg9b (ENSSLUG00000018999)	ENSSLUG00000018980 #17	ENSSLUG00000018971	guk1a (ENSSLUG00000018960) #20	zgc:63882 (ENSSLUG00000018953) #22	ENSSLUG00000018944 ##23	wnt3a (ENSSLUG00000018926) #24	wnt9a (ENSSLUG00000018906) #25	snap47 (ENSSLUG00000018881) #27	jmjd4 (ENSSLUG00000018868) #28	iba57 (ENSSLUG00000018866) #19	gjc2 (ENSSLUG00000018864)	CYP8B1 (ENSSLUG00000018852)	ENSSLUG00000018846	ENSSLUG00000018836	tmie (ENSSLUG00000018825)	pth1r (ENSSLUG00000018670)	myl13 (ENSSLUG00000018628)	CRHR2 (ENSSLUG00000018592)	aqp1a.1 (ENSSLUG00000018571)
Cottioidei	ANCESTRAL SPECIES	22	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000154756.B.v ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a	ENSGT00940000157015.i.b.a
Lumpfish	MODERN SPECIES	8	AGAP3 (ENSCLMG00005022823)	gbx1 (ENSCLMG00005022833)	asb10 (ENSCLMG00005022834)	zgc:92591 (ENSCLMG00005022836)	ENSCLMG00005022837	ENSCLMG00005022839	abcb8 (ENSCLMG00005022843)	atg9b (ENSCLMG00005022852)	ENSCLMG00005022853 #17	ENSCLMG00005022854 #17	ENSCLMG00005022855 #17	ENSCLMG00005022856 ##17	ENSCLMG00005022857	ENSCLMG00005022858 ##17	guk1a (ENSCLMG00005022859) #20	zgc:63882 (ENSCLMG00005022860) #22	ENSCLMG00005022861 ##23	wnt3a (ENSCLMG00005001396) #24	wnt9a (ENSCLMG00005001627) #25	snap47 (ENSCLMG00005001677) #27	jmjd4 (ENSCLMG00005001690) #28	iba57 (ENSCLMG00005001701) #19	gjc2 (ENSCLMG00005001710)	cyp8b1.2 (ENSCLMG00005001718)	HIGD1A (ENSCLMG00005001723)	ENSCLMG00005001727	pth1r (ENSCLMG00005001739)	myl13 (ENSCLMG00005001751)	CRHR2 (ENSCLMG00005001756)	aqp1a.1 (ENSCLMG00005001820)	thoc1 (ENSCLMG00005001824)
Stickleback	MODERN SPECIES	2	ENSGACG00000017560	ENSGACG00000017559	ESYT2 (ENSGACG00000017553)	VIPR2 (ENSGACG00000017549)	zmynd11 (ENSGACG00000017546)	DIP2C (ENSGACG00000017540)	ENSGACG00000017538	LARP4B (ENSGACG00000017535)	gtpbp4 (ENSGACG00000017481)	wdr37 (ENSGACG00000017480)	ADARB2 (ENSGACG00000017477)	ENSGACG00000017475	ENSGACG00000017473	OBSCN (ENSGACG00000017451) #17	guk1a (ENSGACG00000017446) #20	zgc:63882 (ENSGACG00000017444) #22	ENSGACG00000017437 ##23	wnt3a (ENSGACG00000017433) #24	wnt9a (ENSGACG00000017431) #25	snap47 (ENSGACG00000017427) #27	jmjd4 (ENSGACG00000017425) #28	iba57 (ENSGACG00000017421) #19	ndufa12 (ENSGACG00000017417)	gjc2 (ENSGACG00000017416)	cyp8b1.2 (ENSGACG00000017414)	HIGD1A (ENSGACG00000017408)	ENSGACG00000017406	pth1r (ENSGACG00000017402)	myl13 (ENSGACG00000017400)	ENSGACG00000017399	ENSGACG00000017397
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000168428.b.b.a	ENSGT00940000177473	ENSGT00940000154756.B.u.a ##17	ENSGT00940000168428.b.b.b	ENSGT00940000177273	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000177117	ENSGT00940000154756.B.v ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000168428.b.b.a	ENSGT00940000177473	ENSGT00940000177117	ENSGT00940000154756.B.v ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.B.v ##17	ENSGT00940000168428.b.a	ENSGT00940000177117	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B.wb	ENSGT00980000198573.a.b.y.a.b.a.a.a	ENSGT00940000153709.B.vb	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B.wb	ENSGT00940000153709.B.vb	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000168428.b.b.a	ENSGT00940000177117	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B.wb	ENSGT00940000154276.d	ENSGT00940000153709.B.vb	ENSGT00940000154276.c.b	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b
Burton s mouthbrooder	MODERN SPECIES	271	RB1CC1 (ENSHBUG00000008004)	AGAP3 (ENSHBUG00000008070)	gbx1 (ENSHBUG00000008078)	asb10 (ENSHBUG00000008102)	zgc:92591 (ENSHBUG00000008114)	asic1c (ENSHBUG00000008202)	cdk5 (ENSHBUG00000008311)	abcb8 (ENSHBUG00000008407)	atg9b (ENSHBUG00000008427)	ENSHBUG00000008454 #17	ENSHBUG00000008466	ENSHBUG00000008485	ENSHBUG00000008501 #17	ENSHBUG00000008537 #17	guk1a (ENSHBUG00000008574) #20	zgc:63882 (ENSHBUG00000008610) #22	ENSHBUG00000008630 ##23	wnt3a (ENSHBUG00000008645) #24	wnt9a (ENSHBUG00000008674) #25	snap47 (ENSHBUG00000008680) #27	jmjd4 (ENSHBUG00000008703) #28	iba57 (ENSHBUG00000008688) #19	gjc2 (ENSHBUG00000008716)	ENSHBUG00000008737	CYP8B1 (ENSHBUG00000008744)	CYP8B1 (ENSHBUG00000008767)	ENSHBUG00000008777	ENSHBUG00000008801	tmie (ENSHBUG00000008834)	pth1r (ENSHBUG00000008845)	myl13 (ENSHBUG00000008874)
Haplochromini_A	ANCESTRAL SPECIES	3	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000168428.b.b.a	ENSGT00940000177117	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B.wb	ENSGT00940000154276.d	ENSGT00940000153709.B.vb	ENSGT00940000154276.c.b	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b
P. nyererei	MODERN SPECIES	299	gbx1 (ENSPNYG00000015383)	asb10 (ENSPNYG00000015391)	zgc:92591 (ENSPNYG00000015415)	ENSPNYG00000015533	asic1c (ENSPNYG00000015547)	cdk5 (ENSPNYG00000015568)	abcb8 (ENSPNYG00000015606)	atg9b (ENSPNYG00000015643)	ENSPNYG00000015682 #17	ENSPNYG00000015705 #17	ENSPNYG00000015724 #17	ENSPNYG00000015731	ENSPNYG00000015745 #17	ENSPNYG00000015759 #17	guk1a (ENSPNYG00000015795) #20	zgc:63882 (ENSPNYG00000015811) #22	ENSPNYG00000015827 ##23	wnt3a (ENSPNYG00000015848) #24	wnt9a (ENSPNYG00000015859) #25	snap47 (ENSPNYG00000015873) #27	jmjd4 (ENSPNYG00000015884) #28	iba57 (ENSPNYG00000015909) #19	gjc2 (ENSPNYG00000015914)	cyp8b1.2 (ENSPNYG00000015921)	ENSPNYG00000015946	ENSPNYG00000015953	ENSPNYG00000015965	tmie (ENSPNYG00000015997)	pth1r (ENSPNYG00000016031)	myl13 (ENSPNYG00000016142)	ENSPNYG00000016533
Haplochromini_B	ANCESTRAL SPECIES	12	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000168428.b.b.a	ENSGT00940000177117	ENSGT00940000154756.B.u.a ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B.wb	ENSGT00940000154276.c.a	ENSGT00940000153709.B.vb.c	ENSGT00940000153709.B.vb.d	ENSGT00940000154276.c.b	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574
Eastern happy	MODERN SPECIES	9	ENSACLG00000017846	ENSACLG00000017804	cdk5 (ENSACLG00000017765)	abcb8 (ENSACLG00000017717)	atg9b (ENSACLG00000017683)	ENSACLG00000017630 #17	ENSACLG00000017610 #17	ENSACLG00000017604 #17	ENSACLG00000017577	ENSACLG00000017571	ENSACLG00000017562	ENSACLG00000017554	ENSACLG00000017538	ENSACLG00000017499 ##17	guk1a (ENSACLG00000017431) #20	zgc:63882 (ENSACLG00000017397) #22	ENSACLG00000017387 ##23	wnt3a (ENSACLG00000017362) #24	wnt9a (ENSACLG00000017340) #25	snap47 (ENSACLG00000017314) #27	iba57 (ENSACLG00000017284) #19	jmjd4 (ENSACLG00000017246) #28	gjc2 (ENSACLG00000017240)	CYP8B1 (ENSACLG00000017220)	CYP8B1 (ENSACLG00000017216)	ENSACLG00000017194	CYP8B1 (ENSACLG00000017189)	ENSACLG00000017176	ENSACLG00000017155	tmie (ENSACLG00000017132)	pth1r (ENSACLG00000017052)
Zebra mbuna	MODERN SPECIES	1100	AGAP3 (ENSMZEG00005025043)	gbx1 (ENSMZEG00005025040)	asb10 (ENSMZEG00005025037)	zgc:92591 (ENSMZEG00005025035)	ENSMZEG00005025031	cdk5 (ENSMZEG00005025020)	abcb8 (ENSMZEG00005025019)	atg9b (ENSMZEG00005025014)	ENSMZEG00005025011 #17	ENSMZEG00005025010 #17	ENSMZEG00005025009	ENSMZEG00005025008	ENSMZEG00005025007	ENSMZEG00005025005 #17	guk1a (ENSMZEG00005025004) #20	zgc:63882 (ENSMZEG00005025001) #22	ENSMZEG00005025000 ##23	wnt3a (ENSMZEG00005024998) #24	wnt9a (ENSMZEG00005024996) #25	snap47 (ENSMZEG00005024995) #27	jmjd4 (ENSMZEG00005024993) #28	iba57 (ENSMZEG00005024992) #19	gjc2 (ENSMZEG00005024991)	CYP8B1 (ENSMZEG00005024989)	ENSMZEG00005024985	CYP8B1 (ENSMZEG00005024983)	CYP8B1 (ENSMZEG00005024980)	ENSMZEG00005024977	ENSMZEG00005024976	tmie (ENSMZEG00005024972)	pth1r (ENSMZEG00005024968)
Lyretail cichlid	MODERN SPECIES	300	gbx1 (ENSNBRG00000011598)	asb10 (ENSNBRG00000011582)	zgc:92591 (ENSNBRG00000011561)	ENSNBRG00000011549	ENSNBRG00000011534	ENSNBRG00000011500	cdk5 (ENSNBRG00000011455)	abcb8 (ENSNBRG00000011417)	atg9b (ENSNBRG00000011390)	ENSNBRG00000011318 #17	ENSNBRG00000011300	ENSNBRG00000011285	ENSNBRG00000011273 #17	ENSNBRG00000011266	guk1a (ENSNBRG00000011244) #20	zgc:63882 (ENSNBRG00000011218) #22	ENSNBRG00000011196 ##23	wnt3a (ENSNBRG00000011176) #24	wnt9a (ENSNBRG00000011153) #25	snap47 (ENSNBRG00000011135) #27	jmjd4 (ENSNBRG00000011113) #28	iba57 (ENSNBRG00000011107) #19	gjc2 (ENSNBRG00000011094)
Nile tilapia	MODERN SPECIES	9	pcmtd1 (ENSONIG00000027759)	ENSONIG00000009529	RB1CC1 (ENSONIG00000009527)	AGAP3 (ENSONIG00000009522)	gbx1 (ENSONIG00000009520)	asb10 (ENSONIG00000009516)	zgc:92591 (ENSONIG00000009515)	asic1c (ENSONIG00000009504)	ENSONIG00000043060	cdk5 (ENSONIG00000009501)	abcb8 (ENSONIG00000009500)	ENSONIG00000029280	atg9b (ENSONIG00000009497)	ENSONIG00000039684 ##17	guk1a (ENSONIG00000009487) #20	zgc:63882 (ENSONIG00000009485) #22	ENSONIG00000009484 ##23	wnt3a (ENSONIG00000033810) #24	wnt9a (ENSONIG00000042511) #25	snap47 (ENSONIG00000009481) #27	jmjd4 (ENSONIG00000032108) #28	iba57 (ENSONIG00000009479) #19	gjc2 (ENSONIG00000009477)	CYP8B1 (ENSONIG00000039038)	CYP8B1 (ENSONIG00000031016)	CYP8B1 (ENSONIG00000037850)	ENSONIG00000038031	CYP8B1 (ENSONIG00000041327)	CYP8B1 (ENSONIG00000028061)	ENSONIG00000009474	ENSONIG00000030390
Midas cichlid	MODERN SPECIES	117	gbx1 (ENSACIG00000018821)	asb10 (ENSACIG00000018828)	zgc:92591 (ENSACIG00000018847)	ENSACIG00000018855	ENSACIG00000018864	ENSACIG00000018879	cdk5 (ENSACIG00000018892)	abcb8 (ENSACIG00000018908)	ENSACIG00000018934	ENSACIG00000018941 #17	ENSACIG00000018960 #17	ENSACIG00000018973	ENSACIG00000019000 #17	ENSACIG00000019011 #17	guk1a (ENSACIG00000019030) #20	zgc:63882 (ENSACIG00000019038) #22	ENSACIG00000019050 ##23	wnt3a (ENSACIG00000019061) #24	wnt9a (ENSACIG00000019067) #25	snap47 (ENSACIG00000019077) #27	jmjd4 (ENSACIG00000019092) #28	iba57 (ENSACIG00000019103) #19	gjc2 (ENSACIG00000019110)	CYP8B1 (ENSACIG00000019115)	CYP8B1 (ENSACIG00000019154)	ENSACIG00000019173	ENSACIG00000019227	tmie (ENSACIG00000019246)	pth1r (ENSACIG00000019265)	myl13 (ENSACIG00000019304)	CRHR2 (ENSACIG00000019316)
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000168428.b.b.a	ENSGT00940000177473	ENSGT00940000177117	ENSGT00940000154756.B.v ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000168428.b.b.a	ENSGT00940000177473	ENSGT00940000177117	ENSGT00940000154756.B.v ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Amphiprion	ANCESTRAL SPECIES	35	ENSGT00800000125285	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000154756.B.v ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Clown anemonefish	MODERN SPECIES	865	ENSAOCG00000021298	RB1CC1 (ENSAOCG00000021262)	AGAP3 (ENSAOCG00000021153)	gbx1 (ENSAOCG00000021122)	asb10 (ENSAOCG00000021104)	zgc:92591 (ENSAOCG00000021083)	ENSAOCG00000021063	cdk5 (ENSAOCG00000021006)	abcb8 (ENSAOCG00000020931)	atg9b (ENSAOCG00000020852)	ENSAOCG00000020832 #17	ENSAOCG00000020793 #17	ENSAOCG00000020759 #17	ENSAOCG00000020708 #17	guk1a (ENSAOCG00000020660) #20	zgc:63882 (ENSAOCG00000001523) #22	ENSAOCG00000002158 ##23	wnt3a (ENSAOCG00000020607) #24	wnt9a (ENSAOCG00000020598) #25	snap47 (ENSAOCG00000020572) #27	jmjd4 (ENSAOCG00000020561) #28	iba57 (ENSAOCG00000020555) #19	gjc2 (ENSAOCG00000020543)	CYP8B1 (ENSAOCG00000020535)	CYP8B1 (ENSAOCG00000020508)	CYP8B1 (ENSAOCG00000020490)	ENSAOCG00000020446	ENSAOCG00000020433	tmie (ENSAOCG00000020407)	pth1r (ENSAOCG00000001505)	myl13 (ENSAOCG00000020277)
Orange clownfish	MODERN SPECIES	1	asb10 (ENSAPEG00000002599)	zgc:92591 (ENSAPEG00000002594)	ENSAPEG00000002526	cdk5 (ENSAPEG00000002446)	abcb8 (ENSAPEG00000002379)	atg9b (ENSAPEG00000002365)	ENSAPEG00000002326 #17	ENSAPEG00000002320 #17	ENSAPEG00000002309 #17	ENSAPEG00000002295 #17	ENSAPEG00000002271 #17	ENSAPEG00000002250 ##17	ENSAPEG00000002230	ENSAPEG00000002168 ##17	guk1a (ENSAPEG00000002141) #20	zgc:63882 (ENSAPEG00000002128) #22	ENSAPEG00000002101 ##23	wnt3a (ENSAPEG00000002089) #24	wnt9a (ENSAPEG00000002075) #25	snap47 (ENSAPEG00000002042) #27	jmjd4 (ENSAPEG00000002030) #28	iba57 (ENSAPEG00000002017) #19	GJC2 (ENSAPEG00000002012)	CYP8B1 (ENSAPEG00000001979)	CYP8B1 (ENSAPEG00000001945)	ENSAPEG00000001932	ENSAPEG00000001898	tmie (ENSAPEG00000001886)	pth1r (ENSAPEG00000001806)	myl13 (ENSAPEG00000001762)	ENSAPEG00000001221
Spiny chromis	MODERN SPECIES	1265										ENSAPOG00000014781 #17	ENSAPOG00000014807	ENSAPOG00000014830	ENSAPOG00000014849	ENSAPOG00000014922 ##17	guk1a (ENSAPOG00000014948) #20	zgc:63882 (ENSAPOG00000014957) #22	ENSAPOG00000014968 ##23	wnt3a (ENSAPOG00000014993) #24	wnt9a (ENSAPOG00000015016) #25
Bicolor damselfish	MODERN SPECIES	2410													ENSSPAG00000003529	ENSSPAG00000003482 #17	guk1a (ENSSPAG00000003465) #20	zgc:63882 (ENSSPAG00000003445) #22	arf2b (ENSSPAG00000003427) ##23
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000154756.B.u.a ##17	ENSGT00940000177473	ENSGT00940000168428.b.a	ENSGT00940000154756.B.v ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000154756.B.u.b ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Aplocheiloidei	ANCESTRAL SPECIES	11	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000154756.B.u.b ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795	ENSGT00940000157015.i.a
Turquoise killifish	MODERN SPECIES	1618	SNTG1 (ENSNFUG00015016268)	PCMTD1 (ENSNFUG00015016259)	ST18 (ENSNFUG00015016175)	RB1CC1 (ENSNFUG00015016079)	ENSNFUG00015016065	AGAP3 (ENSNFUG00015012655)	GBX1 (ENSNFUG00015012554)	asb10 (ENSNFUG00015012552)	zgc:92591 (ENSNFUG00015012548)	ENSNFUG00015012546	asic1c (ENSNFUG00015012539)	cdk5 (ENSNFUG00015012468)	abcb8 (ENSNFUG00015012139)	ATG9B (ENSNFUG00015012089)	GUK1 (ENSNFUG00015011837) #20	C2H1ORF35 (ENSNFUG00015011822) #22	ENSNFUG00015011792 ##23	wnt3a (ENSNFUG00015011740) #24	wnt9a (ENSNFUG00015011683) #25	snap47 (ENSNFUG00015011673) #27	JMJD4 (ENSNFUG00015011664) #28	IBA57 (ENSNFUG00015011660) #19	CX47.1 (ENSNFUG00015011652)	cyp8b1.2 (ENSNFUG00015011644)	ENSNFUG00015011637	HIGD1A (ENSNFUG00015011627)	CCDC13 (ENSNFUG00015011602)	TMIE (ENSNFUG00015011599)	PTH1RA (ENSNFUG00015011505)	ENSNFUG00015011490	ENSNFUG00015011482
Mangrove rivulus	MODERN SPECIES	88	ST18 (ENSKMAG00000004969)	RB1CC1 (ENSKMAG00000004862)	AGAP3 (ENSKMAG00000004760)	gbx1 (ENSKMAG00000004719)	asb10 (ENSKMAG00000004706)	zgc:92591 (ENSKMAG00000004698)	asic1c (ENSKMAG00000004633)	cdk5 (ENSKMAG00000004590)	abcb8 (ENSKMAG00000004537)	atg9b (ENSKMAG00000004505)	ENSKMAG00000004461 #17	ENSKMAG00000004430 ##17	ENSKMAG00000004409 ##17	ENSKMAG00000004392 ##17	guk1a (ENSKMAG00000004364) #20	zgc:63882 (ENSKMAG00000004347) #22	ENSKMAG00000004334 ##23	wnt3a (ENSKMAG00000004304) #24	wnt9a (ENSKMAG00000004277) #25	snap47 (ENSKMAG00000004252) #27	jmjd4 (ENSKMAG00000004220) #28	iba57 (ENSKMAG00000004213) #19	gjc2 (ENSKMAG00000004197)	CYP8B1 (ENSKMAG00000004185)	CYP8B1 (ENSKMAG00000004172)	ENSKMAG00000004148	tmie (ENSKMAG00000004138)	pth1r (ENSKMAG00000004127)	myl13 (ENSKMAG00000004087)	CRHR2 (ENSKMAG00000004038)	aqp1a.1 (ENSKMAG00000004014)
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00950000182846.a.a.b.a.a.f	ENSGT01030000234528.B.b.a.a.a.c.b.t.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a.e ##23	ENSGT00950000183080.a.b.b.a.a.f ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795
NAME_4	ANCESTRAL SPECIES	19	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000165535	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a.e ##23	ENSGT00950000183080.a.b.b.a.a.f ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	1080					ENSCVAG00000018865	asic1c (ENSCVAG00000018849)	cdk5 (ENSCVAG00000018643)	abcb8 (ENSCVAG00000018587)	atg9b (ENSCVAG00000018540)	ENSCVAG00000000485 #17	ENSCVAG00000018495	ENSCVAG00000018479	ENSCVAG00000018473 ##17	ENSCVAG00000018458 ##17	guk1a (ENSCVAG00000018403) #20	zgc:63882 (ENSCVAG00000018338) #22	ENSCVAG00000018314 ##23
Sheepshead minnow	MODERN SPECIES	1226															guk1a (ENSCVAG00000021594) #20	zgc:63882 (ENSCVAG00000021607) #22	ENSCVAG00000021619 ##23	wnt3a (ENSCVAG00000021634) #24	wnt9a (ENSCVAG00000021651) #25
Mummichog	MODERN SPECIES	314	ENSFHEG00000012330	asb10 (ENSFHEG00000012165)	gbx1 (ENSFHEG00000012128)	zgc:92591 (ENSFHEG00000012118)	ENSFHEG00000012108	asic1c (ENSFHEG00000012088)	cdk5 (ENSFHEG00000012060)	abcb8 (ENSFHEG00000011986)	atg9b (ENSFHEG00000011940)	ENSFHEG00000000698 #17	ENSFHEG00000011900 #17	ENSFHEG00000011884 #17	ENSFHEG00000011846 #17	ENSFHEG00000011803 #17	guk1a (ENSFHEG00000011764) #20	zgc:63882 (ENSFHEG00000011733) #22	ENSFHEG00000011714 ##23	wnt3a (ENSFHEG00000011672) #24	wnt9a (ENSFHEG00000011658) #25	snap47 (ENSFHEG00000011639) #27	jmjd4 (ENSFHEG00000011607) #28	iba57 (ENSFHEG00000011625) #19	gjc2 (ENSFHEG00000011554)	cyp8b1.2 (ENSFHEG00000011533)	ENSFHEG00000011234	ENSFHEG00000011215	tmie (ENSFHEG00000011194)
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a.e ##23	ENSGT00950000183080.a.b.b.a.a.f ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795
Poecilia	ANCESTRAL SPECIES	16	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a.e ##23	ENSGT00950000183080.a.b.b.a.a.f ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795
Guppy	MODERN SPECIES	447	RB1CC1 (ENSPREG00000008267)	AGAP3 (ENSPREG00000008165)	gbx1 (ENSPREG00000008139)	asb10 (ENSPREG00000008118)	zgc:92591 (ENSPREG00000008106)	asic1c (ENSPREG00000008045)	cdk5 (ENSPREG00000008002)	abcb8 (ENSPREG00000007968)	atg9b (ENSPREG00000007948)	ENSPREG00000007930 #17	ENSPREG00000007908 #17	ENSPREG00000007891	ENSPREG00000007865 #17	ENSPREG00000007829 #17	guk1a (ENSPREG00000007797) #20	zgc:63882 (ENSPREG00000007758) #22	ENSPREG00000007723 ##23	wnt3a (ENSPREG00000007694) #24	wnt9a (ENSPREG00000007669) #25	snap47 (ENSPREG00000007648) #27	jmjd4 (ENSPREG00000007633) #28	iba57 (ENSPREG00000007620) #19	gjc2 (ENSPREG00000007604)	cyp8b1.2 (ENSPREG00000007589)	HIGD1A (ENSPREG00000007570)	ENSPREG00000007521	tmie (ENSPREG00000007499)	pth1r (ENSPREG00000007473)	myl13 (ENSPREG00000007439)	CRHR2 (ENSPREG00000007384)	aqp1a.1 (ENSPREG00000007361)
NAME_6	ANCESTRAL SPECIES	11	ENSGT00940000154681.a.e	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a.e ##23	ENSGT00950000183080.a.b.b.a.a.f ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795
Amazon molly	MODERN SPECIES	279	snai2 (ENSPFOG00000014336)	SNTG1 (ENSPFOG00000014188)	pcmtd1 (ENSPFOG00000014144)	ST18 (ENSPFOG00000014046)	RB1CC1 (ENSPFOG00000013941)	AGAP3 (ENSPFOG00000013509)	gbx1 (ENSPFOG00000013479)	asb10 (ENSPFOG00000013428)	zgc:92591 (ENSPFOG00000013426)	asic1c (ENSPFOG00000013248)	cdk5 (ENSPFOG00000013234)	abcb8 (ENSPFOG00000013125)	atg9b (ENSPFOG00000013009)	ENSPFOG00000012723 #17	guk1a (ENSPFOG00000012680) #20	zgc:63882 (ENSPFOG00000012658) #22	ENSPFOG00000012632 ##23	ENSPFOG00000022917 ##23	wnt3a (ENSPFOG00000012574) #24	wnt9a (ENSPFOG00000012510) #25	snap47 (ENSPFOG00000012485) #27	jmjd4 (ENSPFOG00000012431) #28	iba57 (ENSPFOG00000012415) #19	gjc2 (ENSPFOG00000020360)	ENSPFOG00000022784	ENSPFOG00000012324	tmie (ENSPFOG00000012295)	pth1r (ENSPFOG00000012205)	myl13 (ENSPFOG00000012174)	ENSPFOG00000012050	aqp1a.1 (ENSPFOG00000012026)
Sailfin molly	MODERN SPECIES	2338											ENSPLAG00000003447 ##17	ENSPLAG00000003454 ##17	ENSPLAG00000003462 ##17	ENSPLAG00000003472 ##17	guk1a (ENSPLAG00000003481) #20	zgc:63882 (ENSPLAG00000003496) #22	ENSPLAG00000000596 ##23
Platyfish	MODERN SPECIES	20	AGAP3 (ENSXMAG00000018898)	gbx1 (ENSXMAG00000027732)	asb10 (ENSXMAG00000018883)	zgc:92591 (ENSXMAG00000018881)	ENSXMAG00000010416	cdk5 (ENSXMAG00000018810)	abcb8 (ENSXMAG00000006347)	atg9b (ENSXMAG00000005722)	ENSXMAG00000021592 #17	ENSXMAG00000024038 #17	ENSXMAG00000027041 #17	ENSXMAG00000023267 ##17	ENSXMAG00000029214	ENSXMAG00000026855 #17	guk1a (ENSXMAG00000027618) #20	zgc:63882 (ENSXMAG00000005776) #22	ENSXMAG00000005788 ##23	wnt3a (ENSXMAG00000005789) #24	wnt9a (ENSXMAG00000005793) #25	snap47 (ENSXMAG00000005805) #27	jmjd4 (ENSXMAG00000028952) #28	iba57 (ENSXMAG00000029078) #19	gjc2 (ENSXMAG00000005815)	cyp8b1.2 (ENSXMAG00000019819)	ENSXMAG00000005817	ENSXMAG00000005821	tmie (ENSXMAG00000005826)	pth1r (ENSXMAG00000005830)	myl13 (ENSXMAG00000022724)	ENSXMAG00000005843	aqp1a.1 (ENSXMAG00000022215)
Oryzias	ANCESTRAL SPECIES	12	ENSGT01030000238439	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.A #17	ENSGT00940000154756.B.u.a ##17	ENSGT00940000177473	ENSGT00940000168428.b.b.a	ENSGT00940000154756.B.v ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b.e	ENSGT00940000156795	ENSGT00940000157015.i.a
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00940000154756.B.u.a ##17	ENSGT00940000177473	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b.f	ENSGT00940000156795	ENSGT00940000157015.i.a
Chinese medaka	MODERN SPECIES	770	snai2 (ENSOSIG00000015927)	SNTG1 (ENSOSIG00000015925)	pcmtd1 (ENSOSIG00000015923)	ENSOSIG00000015922	RB1CC1 (ENSOSIG00000015917)	AGAP3 (ENSOSIG00000015672)	gbx1 (ENSOSIG00000015657)	asb10 (ENSOSIG00000015654)	asic1c (ENSOSIG00000015648)	cdk5 (ENSOSIG00000015647)	abcb8 (ENSOSIG00000015397)	atg9b (ENSOSIG00000015312)	ENSOSIG00000015309	ENSOSIG00000015306 #17	guk1a (ENSOSIG00000015302) #20	zgc:63882 (ENSOSIG00000015300) #22	ENSOSIG00000015298 ##23	wnt3a (ENSOSIG00000015255) #24	wnt9a (ENSOSIG00000015254) #25	snap47 (ENSOSIG00000015251) #27	jmjd4 (ENSOSIG00000015249) #28	iba57 (ENSOSIG00000015248) #19	gjc2 (ENSOSIG00000015247)	cyp8b1.2 (ENSOSIG00000015245)	HIGD1A (ENSOSIG00000015244)	ENSOSIG00000015243	tmie (ENSOSIG00000015242)	myl13 (ENSOSIG00000015238)	pth1r (ENSOSIG00000015179)	aqp1a.1 (ENSOSIG00000015128)	thoc1 (ENSOSIG00000014336)
Japanese Medaka HdrR	MODERN SPECIES	8	gbx1 (ENSORLG00000017521)	asb10 (ENSORLG00000017524)	asic1c (ENSORLG00000017530)	cdk5 (ENSORLG00000017539)	abcb8 (ENSORLG00000017547)	atg9b (ENSORLG00000017550)	ENSORLG00000022942 #17	ENSORLG00000028404 ##17	ENSORLG00000030589 ##17	ENSORLG00000029183	ENSORLG00000026200	ENSORLG00000024770	ENSORLG00000028027 ##17	ENSORLG00000025989 ##17	guk1a (ENSORLG00000017581) #20	zgc:63882 (ENSORLG00000017592) #22	ENSORLG00000017594 ##23	wnt3a (ENSORLG00000017597) #24	wnt9a (ENSORLG00000017600) #25	snap47 (ENSORLG00000017602) #27	jmjd4 (ENSORLG00000017605) #28	iba57 (ENSORLG00000017609) #19	gjc2 (ENSORLG00000022400)	cyp8b1.2 (ENSORLG00000017611)	ENSORLG00000024205	ENSORLG00000017613	tmie (ENSORLG00000023308)	pth1r (ENSORLG00000017615)	myl13 (ENSORLG00000017618)	CRHR2 (ENSORLG00000017621)	ENSORLG00000024217
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT01030000238439	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a.a	ENSGT00940000154756.A #17	ENSGT00940000168428.b.b.a	ENSGT00940000154756.B.v ##17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.b.a.a ##23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b.e	ENSGT00940000156795	ENSGT00940000157015.i.a
Javanese ricefish	MODERN SPECIES	8	ENSOJAG00000021990	ST18 (ENSOJAG00000022005)	ENSOJAG00000022018	RB1CC1 (ENSOJAG00000022033)	AGAP3 (ENSOJAG00000022147)	gbx1 (ENSOJAG00000022627)	asb10 (ENSOJAG00000022629)	asic1c (ENSOJAG00000022638)	ENSOJAG00000022672	abcb8 (ENSOJAG00000022678)	ENSOJAG00000022726	atg9b (ENSOJAG00000022732)	ENSOJAG00000022738 #17	ENSOJAG00000022768 #17	guk1a (ENSOJAG00000022785) #20	zgc:63882 (ENSOJAG00000022794) #22	arf2b (ENSOJAG00000022804) ##23	wnt3a (ENSOJAG00000022812) #24	wnt9a (ENSOJAG00000022824) #25	snap47 (ENSOJAG00000022836) #27	jmjd4 (ENSOJAG00000022839) #28	iba57 (ENSOJAG00000022843) #19	gjc2 (ENSOJAG00000022848)	cyp8b1.2 (ENSOJAG00000022853)	HIGD1A (ENSOJAG00000022856)	ENSOJAG00000022860	tmie (ENSOJAG00000009593)	pth1r (ENSOJAG00000009615)	myl13 (ENSOJAG00000009786)	CRHR2 (ENSOJAG00000009920)	aqp1a.1 (ENSOJAG00000011393)
Indian medaka	MODERN SPECIES	158																zgc:63882 (ENSOMEG00000016902) #22
Tiger tail seahorse	MODERN SPECIES	277	RB1CC1 (ENSHCOG00000019600)	AGAP3 (ENSHCOG00000019645)	gbx1 (ENSHCOG00000019655)	asb10 (ENSHCOG00000019668)	zgc:92591 (ENSHCOG00000019677)	asic1c (ENSHCOG00000020010)	atg9b (ENSHCOG00000020041)	ENSHCOG00000020079 #17	ENSHCOG00000020092	ENSHCOG00000020104	ENSHCOG00000020118	ENSHCOG00000020124	ENSHCOG00000020136 #17	ENSHCOG00000020164 #17	guk1a (ENSHCOG00000020183) #20	zgc:63882 (ENSHCOG00000020206) #22	ENSHCOG00000020217 ##23	wnt3a (ENSHCOG00000020230) #24	wrnip1 (ENSHCOG00000020254)	MYLK4 (ENSHCOG00000020269)	foxc1a (ENSHCOG00000020281)	foxf2a (ENSHCOG00000020289)	foxq1a (ENSHCOG00000020294)	irf4a (ENSHCOG00000020303)	dusp22b (ENSHCOG00000020341)	ripk1l (ENSHCOG00000020345)	opn7a (ENSHCOG00000020385)	MEP1B (ENSHCOG00000020393)	PHLPP1 (ENSHCOG00000020453)	PHACTR1 (ENSHCOG00000020494)	SIRT5 (ENSHCOG00000020510)
Pinecone sodierfish	MODERN SPECIES	8	cdk5 (ENSMMDG00005018899)	abcb8 (ENSMMDG00005018903)	atg9b (ENSMMDG00005018926)	ENSMMDG00005018927	ENSMMDG00005018928	ENSMMDG00005018930	ENSMMDG00005018931	ENSMMDG00005018933	ENSMMDG00005018935	ENSMMDG00005018940	ENSMMDG00005018946 #17	ENSMMDG00005018948	ENSMMDG00005018949 ##17	ENSMMDG00005018950 ##17	guk1a (ENSMMDG00005018952) #20	zgc:63882 (ENSMMDG00005018953) #22	ENSMMDG00005018955 ##23	wnt3a (ENSMMDG00005018957) #24	wnt9a (ENSMMDG00005018960) #25	snap47 (ENSMMDG00005018967) #27	jmjd4 (ENSMMDG00005018968) #28	iba57 (ENSMMDG00005018970) #19	gjc2 (ENSMMDG00005018971)	HIGD1A (ENSMMDG00005018974)	ENSMMDG00005018976	tmie (ENSMMDG00005018978)	pth1r (ENSMMDG00005018980)	myl13 (ENSMMDG00005018981)	CRHR2 (ENSMMDG00005018984)	aqp1a.1 (ENSMMDG00005019027)	aqp1a.2 (ENSMMDG00005019032)
Cod	MODERN SPECIES	21	SNTG1 (ENSGMOG00000002680)	pcmtd1 (ENSGMOG00000028842)	ENSGMOG00000028587	RB1CC1 (ENSGMOG00000002866)	AGAP3 (ENSGMOG00000002916)	gbx1 (ENSGMOG00000031776)	asb10 (ENSGMOG00000002971)	ENSGMOG00000024350	ENSGMOG00000002991	zgc:92591 (ENSGMOG00000036273)	asic1c (ENSGMOG00000003105)	ENSGMOG00000003158	ENSGMOG00000003192	ENSGMOG00000003217	guk1a (ENSGMOG00000010668) #20	zgc:63882 (ENSGMOG00000031619) #22	arf1 (ENSGMOG00000000429)	wnt3a (ENSGMOG00000023810) #24	ENSGMOG00000008528	wnt9a (ENSGMOG00000000387) #25	snap47 (ENSGMOG00000000380) #27	jmjd4 (ENSGMOG00000000368) #28	iba57 (ENSGMOG00000000358) #19	ENSGMOG00000008554	ENSGMOG00000008538	ENSGMOG00000029772	ENSGMOG00000008536	ENSGMOG00000013642	foxc1a (ENSGMOG00000025975)	foxf2a (ENSGMOG00000034795)	foxq1a (ENSGMOG00000020500)
Protacanthopterygii	ANCESTRAL SPECIES	14	ENSGT00950000182863.B.a	ENSGT00950000183032.A.b.b.a	ENSGT00940000159905	ENSGT00390000015871	ENSGT00940000159586	ENSGT00940000154365.a.a	ENSGT00940000158974	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00970000196942	ENSGT00940000154756.A #17	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00940000165468	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	24						ENSGT00940000159586.eb	ENSGT00940000154365.a.a.c	ENSGT01100000263569.a.a	ENSGT00940000164727.eb.a	ENSGT00940000160805.s.b	ENSGT00940000159126	ENSGT00390000014839.a.d	ENSGT00970000196942.a	ENSGT00940000154756.A.bc.b #17	ENSGT00940000155815.q.d #20	ENSGT00390000005590.c #22	ENSGT00940000165468.h.a	ENSGT00940000160510.e.a #24	ENSGT00940000159618.f #25	ENSGT00950000182843.b.i #27	ENSGT00940000159380.c #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a.e	ENSGT00940000153709.B.ac	ENSGT01020000230359.E	ENSGT00940000154276.h	ENSGT00940000158574.b	ENSGT01030000234570.d.b.a.b.b.b.h	ENSGT00940000156795.j	ENSGT00940000157015.i.a.f	ENSGT00940000157015.i.b.b
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00950000182863.B.a.a	ENSGT00950000183032.A.b.b.a.e	ENSGT00940000159905.x	ENSGT00390000015871.j	ENSGT00940000159586.eb	ENSGT00940000154365.a.a.c	ENSGT01100000263569.a.a	ENSGT00940000164727.eb.a	ENSGT00940000160805.s.b	ENSGT00940000159126	ENSGT00390000014839.a.d	ENSGT00970000196942.a.b	ENSGT00970000196942.a.a	ENSGT00940000154756.A.bc.b #17	ENSGT00940000155815.q.d #20	ENSGT00390000005590.c #22	ENSGT00940000165468.h.a	ENSGT00940000160510.e.a #24	ENSGT00940000159618.f #25	ENSGT00950000182843.b.i #27	ENSGT00940000159380.c #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a.e	ENSGT00940000153709.B.ac	ENSGT01020000230359.E	ENSGT00940000154276.h	ENSGT00940000164845.i.b	ENSGT00940000164845.j	ENSGT00940000158574.b	ENSGT01030000234570.d.b.a.b.b.b.h	ENSGT00940000156795.j
Salmo	ANCESTRAL SPECIES	21	ENSGT00950000182863.B.a.a	ENSGT00950000183032.A.b.b.a.e	ENSGT00940000159905.x	ENSGT00390000015871.j	ENSGT00940000159586.eb	ENSGT00940000154365.a.a.c	ENSGT01100000263569.a.a	ENSGT00940000164727.eb.a	ENSGT00940000160805.s.b	ENSGT00940000159126	ENSGT00390000014839.a.d	ENSGT00970000196942.a.b	ENSGT00970000196942.a.a	ENSGT00940000154756.A.bc.b #17	ENSGT00940000155815.q.d #20	ENSGT00390000005590.c #22	ENSGT00940000165468.h.a	ENSGT00940000160510.e.a #24	ENSGT00940000159618.f #25	ENSGT00950000182843.b.i #27	ENSGT00940000159380.c #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a.e	ENSGT00940000153709.B.ac	ENSGT01020000230359.E	ENSGT00940000154276.h.b	ENSGT00940000164845.i.b	ENSGT00990000212252	ENSGT00940000164845.j	ENSGT00940000158574.b	ENSGT01030000234570.d.b.a.b.b.b.h
Atlantic salmon	MODERN SPECIES	5	RB1CC1 (ENSSSAG00000040196)	ENSSSAG00000092930	AGAP3 (ENSSSAG00000045432)	ENSSSAG00000111763	gbx1 (ENSSSAG00000047975)	zgc:92591 (ENSSSAG00000110359)	asic1c (ENSSSAG00000074872)	cdk5 (ENSSSAG00000111176)	ENSSSAG00000048268	atg9b (ENSSSAG00000049245)	ENSSSAG00000049270	ENSSSAG00000049319	ENSSSAG00000049346 #17	ENSSSAG00000049398 #17	guk1 (ENSSSAG00000111657) #20	cssa14h1orf35 (ENSSSAG00000049571) #22	arf1 (ENSSSAG00000104948)	wnt3a (ENSSSAG00000092832) #24	ENSSSAG00000109403	wnt9a (ENSSSAG00000049857) #25	snap47 (ENSSSAG00000107907) #27	ENSSSAG00000121438	ENSSSAG00000097326	ENSSSAG00000093231	ENSSSAG00000049904	ENSSSAG00000049907	ENSSSAG00000109327	ENSSSAG00000050009	tmie (ENSSSAG00000050027)	pth1r (ENSSSAG00000097651)	MYL3 (ENSSSAG00000055222)
River trout	MODERN SPECIES	13	ST18 (ENSSTUG00000008180)	RB1CC1 (ENSSTUG00000008258)	AGAP3 (ENSSTUG00000008467)	gbx1 (ENSSTUG00000010950)	zgc:92591 (ENSSTUG00000010956)	asic1c (ENSSTUG00000010965)	cdk5 (ENSSTUG00000011004)	abcb8 (ENSSTUG00000011038)	atg9b (ENSSTUG00000011733)	ENSSTUG00000011746	ENSSTUG00000011778	ENSSTUG00000011809 #17	ENSSTUG00000011889 #17	ENSSTUG00000011909 #17	guk1a (ENSSTUG00000011933) #20	zgc:63882 (ENSSTUG00000011946) #22	arf1 (ENSSTUG00000011952)	wnt3a (ENSSTUG00000011959) #24	wnt9a (ENSSTUG00000011978) #25	snap47 (ENSSTUG00000012009) #27	ENSSTUG00000012020 #28	iba57 (ENSSTUG00000012038) #19	GJC2 (ENSSTUG00000012043)	CYP8B1 (ENSSTUG00000012048)	ACKR2 (ENSSTUG00000012051)	ENSSTUG00000012056	ENSSTUG00000012065	ENSSTUG00000012072	pth1r (ENSSTUG00000012099)	myl13 (ENSSTUG00000012907)	CRHR2 (ENSSTUG00000012948)
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00950000182863.B.a.a	ENSGT00950000183032.A.b.b.a.e	ENSGT00940000159905.x	ENSGT00390000015871.j	ENSGT00940000159586.eb	ENSGT00940000154365.a.a.c	ENSGT01100000263569.a.a	ENSGT00940000164727.eb.a	ENSGT00940000160805.s.b	ENSGT00940000159126	ENSGT00390000014839.a.d	ENSGT00970000196942.a.b	ENSGT00970000196942.a.a	ENSGT00940000154756.A.bc.b #17	ENSGT00940000155815.q.d #20	ENSGT00390000005590.c #22	ENSGT00940000165468.h.a	ENSGT00940000160510.e.a #24	ENSGT00940000159618.f #25	ENSGT00950000182843.b.i #27	ENSGT00940000159380.c #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a.e	ENSGT00940000153709.B.ac	ENSGT01020000230359.E	ENSGT00940000154276.h	ENSGT00940000164845.i.b	ENSGT00940000164845.j	ENSGT00940000158574.b	ENSGT01030000234570.d.b.a.b.b.b.h	ENSGT00940000156795.j
Rainbow trout	MODERN SPECIES	29	RB1CC1 (ENSOMYG00000025339)	AGAP3 (ENSOMYG00000025622)	ENSOMYG00000053122	gbx1 (ENSOMYG00000026337)	zgc:92591 (ENSOMYG00000067767)	asic1c (ENSOMYG00000026444)	cdk5 (ENSOMYG00000026617)	ENSOMYG00000027030	atg9b (ENSOMYG00000028292)	ENSOMYG00000028303	ENSOMYG00000054775	ENSOMYG00000028365	ENSOMYG00000028470 #17	ENSOMYG00000028625 #17	guk1a (ENSOMYG00000028695) #20	zgc:63882 (ENSOMYG00000028745) #22	arf1 (ENSOMYG00000052393)	wnt3a (ENSOMYG00000028815) #24	wnt9a (ENSOMYG00000028943) #25	snap47 (ENSOMYG00000028963) #27	ENSOMYG00000029024	iba57 (ENSOMYG00000029038) #19	ENSOMYG00000068688	ENSOMYG00000029052	ENSOMYG00000029066	ENSOMYG00000029076	ENSOMYG00000070524	ENSOMYG00000029278	ENSOMYG00000029440	ENSOMYG00000030141	ENSOMYG00000064052
Oncorhynchus_a	ANCESTRAL SPECIES	24	ENSGT00950000182863.B.a.a	ENSGT00950000183032.A.b.b.a.e	ENSGT00940000159905.x	ENSGT00390000015871.j	ENSGT00940000159586.eb	ENSGT00940000154365.a.a.c	ENSGT01100000263569.a.a	ENSGT00940000164727.eb.a	ENSGT00940000160805.s.b	ENSGT00940000159126	ENSGT00390000014839.a.d	ENSGT00970000196942.a.b	ENSGT00970000196942.a.a	ENSGT00940000154756.A.bc.b #17	ENSGT00940000155815.q.d #20	ENSGT00390000005590.c #22	ENSGT00940000165468.h.a	ENSGT00940000160510.e.a #24	ENSGT00940000159618.f #25	ENSGT00950000182843.b.i #27	ENSGT00940000159380.c #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a.e	ENSGT00940000153709.B.ac	ENSGT01020000230359.E	ENSGT00940000154276.h	ENSGT00940000164845.i.b	ENSGT00940000164845.j	ENSGT00940000158574.b	ENSGT01030000234570.d.b.a.b.b.b.h	ENSGT00940000156795.j
Chinook salmon	MODERN SPECIES	1	ENSOTSG00005021964	ENSOTSG00005021965	ENSOTSG00005021966	AGAP3 (ENSOTSG00005021973)	gbx1 (ENSOTSG00005022634)	zgc:92591 (ENSOTSG00005022636)	asic1c (ENSOTSG00005022638)	cdk5 (ENSOTSG00005022708)	abcb8 (ENSOTSG00005022712)	atg9b (ENSOTSG00005024017)	ENSOTSG00005024018	ENSOTSG00005024019	ENSOTSG00005024020	ENSOTSG00005024025 #17	guk1a (ENSOTSG00005024027) #20	zgc:63882 (ENSOTSG00005024028) #22	wnt3a (ENSOTSG00005024029) #24	wnt9a (ENSOTSG00005024031) #25	snap47 (ENSOTSG00005024050) #27	jmjd4 (ENSOTSG00005024055) #28	iba57 (ENSOTSG00005024057) #19	GJC2 (ENSOTSG00005024059)	CYP8B1 (ENSOTSG00005024060)	ACKR2 (ENSOTSG00005024061)	ENSOTSG00005024062	tmie (ENSOTSG00005024065)	pth1r (ENSOTSG00005024066)	myl13 (ENSOTSG00005024070)	CRHR2 (ENSOTSG00005024075)	aqp1a.1 (ENSOTSG00005026513)	aqp1a.2 (ENSOTSG00005026515)
Coho salmon	MODERN SPECIES	23	ST18 (ENSOKIG00005043866)	RB1CC1 (ENSOKIG00005043923)	AGAP3 (ENSOKIG00005044247)	gbx1 (ENSOKIG00005045547)	zgc:92591 (ENSOKIG00005045562)	asic1c (ENSOKIG00005045576)	cdk5 (ENSOKIG00005045617)	abcb8 (ENSOKIG00005045671)	atg9b (ENSOKIG00005046390)	ENSOKIG00005046399	ENSOKIG00005046410	ENSOKIG00005046413	ENSOKIG00005046427 #17	ENSOKIG00005046469 #17	guk1a (ENSOKIG00005046473) #20	zgc:63882 (ENSOKIG00005046482) #22	arf1 (ENSOKIG00005046487)	wnt3a (ENSOKIG00005046495) #24	wnt9a (ENSOKIG00005046511) #25	ENSOKIG00005046525	IBA57 (ENSOKIG00005046527) #19	ENSOKIG00005046534	gjc2 (ENSOKIG00005046545)	CYP8B1 (ENSOKIG00005046550)	ACKR2 (ENSOKIG00005046552)	ENSOKIG00005046557	ENSOKIG00005046562	pth1r (ENSOKIG00005046578)	myl13 (ENSOKIG00005046628)	CRHR2 (ENSOKIG00005046707)	ENSOKIG00005047764
Huchen	MODERN SPECIES	3303										ENSHHUG00000011408 ##17	ENSHHUG00000011351 #17	ENSHHUG00000011446	ENSHHUG00000011457 ##17	ENSHHUG00000011465 ##17	guk1a (ENSHHUG00000011476) #20	zgc:63882 (ENSHHUG00000011487) #22	arf1 (ENSHHUG00000011493)	wnt3a (ENSHHUG00000011503) #24
Salmoninae	ANCESTRAL SPECIES	86	ENSGT00950000182863.B.a.b	ENSGT00950000183032.A.b.b.a.f	ENSGT00940000159905.w	ENSGT00390000015871.i	ENSGT00940000159586.db	ENSGT00940000154365.a.a.d	ENSGT00940000158974	ENSGT00940000164727.eb.b	ENSGT00940000160805.s.a	ENSGT00390000014839.a.c	ENSGT00970000196942.b	ENSGT00940000154756.A.bc.a #17	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A.cc #17	ENSGT00940000155815.q.c #20	ENSGT00390000005590.d #22	ENSGT00940000165468.h.b	ENSGT00940000160510.e.b #24	ENSGT00940000159618.e #25	ENSGT00950000182843.b.j #27	ENSGT00940000159380.d #28	ENSGT01090000260005.a.a.a.b.a.a.a.f	ENSGT00940000153709.B.`c.b	ENSGT00940000153709.B.`c.a	ENSGT01000000221856	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574.a	ENSGT01030000234570.d.b.a.b.b.b.g	ENSGT00940000156795.i	ENSGT00940000157015.i.a.e
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00950000182863.B.a.b	ENSGT00950000183032.A.b.b.a.f	ENSGT00940000159905.w	ENSGT00390000015871.i	ENSGT00940000159586.db	ENSGT00940000154365.a.a.d	ENSGT00940000158974	ENSGT00940000164727.eb.b	ENSGT00940000160805.s.a	ENSGT00390000014839.a.c	ENSGT00970000196942.b	ENSGT00940000154756.A.bc.a #17	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A.cc #17	ENSGT00940000155815.q.c #20	ENSGT00390000005590.d #22	ENSGT00940000165468.h.b	ENSGT00940000160510.e.b #24	ENSGT00940000159618.e #25	ENSGT00950000182843.b.j #27	ENSGT00940000159380.d #28	ENSGT00990000212116	ENSGT01090000260005.a.a.a.b.a.a.a.f	ENSGT00940000153709.B.`c.b	ENSGT00940000153709.B.`c.a	ENSGT01000000221856	ENSGT00390000000596	ENSGT00940000164845.i.a	ENSGT00940000158574.a	ENSGT01030000234570.d.b.a.b.b.b.g	ENSGT00940000156795.i
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT00740000115534.a.b.o.b	ENSGT00940000154511.b.a	ENSGT00950000182863.B.a.b	ENSGT00950000183032.A.b.b.a.f	ENSGT00940000159905.w	ENSGT00390000015871.i	ENSGT00940000159586.db	ENSGT00940000154365.a.a.d	ENSGT00940000158974	ENSGT00940000164727.eb.b	ENSGT00940000160805.s.a	ENSGT00390000014839.a.c	ENSGT00970000196942.b	ENSGT00940000154756.A.cc #17	ENSGT00940000155815.q.c #20	ENSGT00390000005590.d #22	ENSGT00940000165468.h.b	ENSGT00940000160510.e.b #24	ENSGT00940000159618.e #25	ENSGT00950000182843.b.j #27	ENSGT00940000159380.d #28	ENSGT00990000212116	ENSGT01090000260005.a.a.a.b.a.a.a.f	ENSGT00940000153709.B.`c.b	ENSGT00940000153709.B.`c.a	ENSGT01000000221856	ENSGT00390000000596	ENSGT00940000164845.i.a	ENSGT00940000158574.a	ENSGT01030000234570.d.b.a.b.b.b.g	ENSGT00940000156795.i
Oncorhynchus_a	ANCESTRAL SPECIES	22	ENSGT00740000115534.a.b.o.b	ENSGT00940000154511.b.a	ENSGT00950000182863.B.a.b	ENSGT00950000183032.A.b.b.a.f	ENSGT00940000159905.w	ENSGT00390000015871.i	ENSGT00940000159586.db	ENSGT00940000154365.a.a.d	ENSGT00940000158974	ENSGT00940000164727.eb.b	ENSGT00940000160805.s.a	ENSGT00390000014839.a.c	ENSGT00970000196942.b	ENSGT00940000154756.A.cc #17	ENSGT00940000155815.q.c #20	ENSGT00390000005590.d #22	ENSGT00940000165468.h.b	ENSGT00940000160510.e.b #24	ENSGT00940000159618.e #25	ENSGT00950000182843.b.j #27	ENSGT00940000159380.d #28	ENSGT00990000212116	ENSGT01090000260005.a.a.a.b.a.a.a.f	ENSGT00940000153709.B.`c.b	ENSGT00940000153709.B.`c.a	ENSGT01000000221856	ENSGT00390000000596	ENSGT00940000164845.i.a	ENSGT00940000158574.a	ENSGT01030000234570.d.b.a.b.b.b.g	ENSGT00940000156795.i
Coho salmon	MODERN SPECIES	19	ENSOKIG00005012448	SNAI2 (ENSOKIG00005012435)	SNTG1 (ENSOKIG00005012321)	pcmtd1 (ENSOKIG00005012295)	ST18 (ENSOKIG00005012162)	RB1CC1 (ENSOKIG00005012074)	AGAP3 (ENSOKIG00005010889)	gbx1 (ENSOKIG00005010810)	asb10 (ENSOKIG00005010800)	ENSOKIG00005010796	asic1c (ENSOKIG00005010680)	CDK5 (ENSOKIG00005010623)	ATG9B (ENSOKIG00005037064)	ENSOKIG00005037021	guk1a (ENSOKIG00005036691) #20	zgc:63882 (ENSOKIG00005036633) #22	arf1 (ENSOKIG00005036591)	ENSOKIG00005036510	wnt9a (ENSOKIG00005036461) #25	snap47 (ENSOKIG00005036449) #27	jmjd4 (ENSOKIG00005036439) #28	ENSOKIG00005036373	ENSOKIG00005036360	ENSOKIG00005036337	CYP8B1 (ENSOKIG00005036319)	CYP8B1 (ENSOKIG00005036307)	ENSOKIG00005036289	CCDC13 (ENSOKIG00005036275)	tmie (ENSOKIG00005036268)	pth1r (ENSOKIG00005035316)	ENSOKIG00005035220
Chinook salmon	MODERN SPECIES	20	SNTG1 (ENSOTSG00005030084)	pcmtd1 (ENSOTSG00005030078)	ST18 (ENSOTSG00005030071)	RB1CC1 (ENSOTSG00005029998)	AGAP3 (ENSOTSG00005025446)	gbx1 (ENSOTSG00005025423)	asb10 (ENSOTSG00005025421)	ENSOTSG00005025419	asic1c (ENSOTSG00005025284)	ENSOTSG00005025276	atg9b (ENSOTSG00005025274)	ENSOTSG00005025265	ENSOTSG00005025264 #17	ENSOTSG00005025260 #17	guk1a (ENSOTSG00005025253) #20	zgc:63882 (ENSOTSG00005025248) #22	arf1 (ENSOTSG00005045028)	wnt3a (ENSOTSG00005045026) #24	wnt9a (ENSOTSG00005045024) #25	snap47 (ENSOTSG00005045023) #27	jmjd4 (ENSOTSG00005045021) #28	ENSOTSG00005045020	gjc2 (ENSOTSG00005045019)	CYP8B1 (ENSOTSG00005045018)	ENSOTSG00005045017	CCDC13 (ENSOTSG00005045016)	tmie (ENSOTSG00005045014)	pth1r (ENSOTSG00005045013)	myl13 (ENSOTSG00005045012)	ENSOTSG00005044545	aqp1a.1 (ENSOTSG00005044541)
Rainbow trout	MODERN SPECIES	20	SNAI2 (ENSOMYG00000042032)	SNTG1 (ENSOMYG00000041982)	pcmtd1 (ENSOMYG00000041965)	ST18 (ENSOMYG00000041553)	RB1CC1 (ENSOMYG00000041485)	AGAP3 (ENSOMYG00000041178)	gbx1 (ENSOMYG00000041088)	asb10 (ENSOMYG00000041083)	ENSOMYG00000072832	asic1c (ENSOMYG00000041000)	ENSOMYG00000040956	ENSOMYG00000040941	ENSOMYG00000049647	CATH-1a (ENSOMYG00000040935)	ENSOMYG00000071217	zgc:63882 (ENSOMYG00000040846) #22	ENSOMYG00000040839 #20	arf1 (ENSOMYG00000069131)	ENSOMYG00000040813	ENSOMYG00000063977	wnt9a (ENSOMYG00000040791) #25	snap47 (ENSOMYG00000040763) #27	jmjd4 (ENSOMYG00000040746) #28	ENSOMYG00000040757	ENSOMYG00000040734	ENSOMYG00000040732	ENSOMYG00000040725	tmie (ENSOMYG00000040717)	pth1r (ENSOMYG00000040693)	myl13 (ENSOMYG00000040669)	ENSOMYG00000037732
Salmo	ANCESTRAL SPECIES	5	ENSGT00950000182863.B.a.b	ENSGT00950000183032.A.b.b.a.f	ENSGT00940000159905.w	ENSGT00390000015871.i	ENSGT00940000159586.db	ENSGT00940000154365.a.a.d	ENSGT00940000158974	ENSGT00940000164727.eb.b	ENSGT00940000160805.s.a	ENSGT00390000014839.a.c	ENSGT00970000196942.b	ENSGT00940000154756.A.bc.a #17	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A.cc #17	ENSGT00940000155815.q.c #20	ENSGT00390000005590.d #22	ENSGT00940000165468.h.b	ENSGT00940000160510.e.b #24	ENSGT00940000159618.e #25	ENSGT00950000182843.b.j #27	ENSGT00940000159380.d #28	ENSGT00990000212116	ENSGT01090000260005.a.a.a.b.a.a.a.f	ENSGT00940000153709.B.`c.b	ENSGT00940000153709.B.`c.a	ENSGT00940000154276.h.a	ENSGT00390000000596	ENSGT00940000164845.i.a	ENSGT00940000158574.a	ENSGT01030000234570.d.b.a.b.b.b.g	ENSGT00940000156795.i
River trout	MODERN SPECIES	24	SNTG1 (ENSSTUG00000050297)	pcmtd1 (ENSSTUG00000050292)	ST18 (ENSSTUG00000050253)	RB1CC1 (ENSSTUG00000050194)	AGAP3 (ENSSTUG00000050108)	gbx1 (ENSSTUG00000050089)	asb10 (ENSSTUG00000050086)	asic1c (ENSSTUG00000050075)	cdk5 (ENSSTUG00000050067)	atg9b (ENSSTUG00000050065)	ENSSTUG00000050060	ENSSTUG00000050046 #17	ENSSTUG00000050038	ENSSTUG00000050032 #17	guk1a (ENSSTUG00000050025) #20	zgc:63882 (ENSSTUG00000050024) #22	arf1 (ENSSTUG00000050022)	wnt3a (ENSSTUG00000050020) #24	wnt9a (ENSSTUG00000050016) #25	ENSSTUG00000050014	snap47 (ENSSTUG00000050010) #27	jmjd4 (ENSSTUG00000050009) #28	ENSSTUG00000050006	CYP8B1 (ENSSTUG00000050004)	CYP8B1 (ENSSTUG00000050003)	ENSSTUG00000050002	CCDC13 (ENSSTUG00000049997)	tmie (ENSSTUG00000049989)	pth1r (ENSSTUG00000049940)	myl13 (ENSSTUG00000049932)	ENSSTUG00000049748
Atlantic salmon	MODERN SPECIES	22	mcm4 (ENSSSAG00000070777)	ube2v2 (ENSSSAG00000071078)	snai2 (ENSSSAG00000071101)	SNTG1 (ENSSSAG00000038787)	pcmtd1 (ENSSSAG00000071153)	ST18 (ENSSSAG00000071181)	RB1CC1 (ENSSSAG00000071295)	AGAP3 (ENSSSAG00000073179)	gbx1 (ENSSSAG00000074857)	asb10 (ENSSSAG00000074859)	asic1c (ENSSSAG00000048005)	ENSSSAG00000118300	ENSSSAG00000074940	CATH-1A (ENSSSAG00000074950)	kgua (ENSSSAG00000087401) #20	zgc:63882 (ENSSSAG00000102224) #22	arf1 (ENSSSAG00000074998)	ENSSSAG00000075007	wnt9a (ENSSSAG00000096426) #25	snap47 (ENSSSAG00000075073) #27	jmjd4 (ENSSSAG00000104962) #28	ENSSSAG00000075076	ENSSSAG00000117622	ENSSSAG00000105949	ccdc13 (ENSSSAG00000075091)	tmie (ENSSSAG00000075098)	pth1r (ENSSSAG00000075121)	myl13 (ENSSSAG00000075202)	ENSSSAG00000109505	ENSSSAG00000000221	ENSSSAG00000063083
Huchen	MODERN SPECIES	112	pcmtd1 (ENSHHUG00000027709)	ST18 (ENSHHUG00000027717)	RB1CC1 (ENSHHUG00000027722)	AGAP3 (ENSHHUG00000027750)	gbx1 (ENSHHUG00000027841)	asb10 (ENSHHUG00000027843)	ENSHHUG00000027853	cdk5 (ENSHHUG00000027887)	atg9b (ENSHHUG00000028090)	ENSHHUG00000028103	ENSHHUG00000028118 #17	ENSHHUG00000028166 ##17	ENSHHUG00000028173	ENSHHUG00000028179 ##17	guk1a (ENSHHUG00000028260) #20	zgc:63882 (ENSHHUG00000028275) #22	arf1 (ENSHHUG00000028289)	ENSHHUG00000028323	wnt9a (ENSHHUG00000028338) #25
Northern pike	MODERN SPECIES	2	ube2v2 (ENSELUG00000029938)	SNAI2 (ENSELUG00000021795)	SNTG1 (ENSELUG00000021900)	pcmtd1 (ENSELUG00000021947)	ST18 (ENSELUG00000021998)	RB1CC1 (ENSELUG00000022064)	AGAP3 (ENSELUG00000022117)	gbx1 (ENSELUG00000022141)	asb10 (ENSELUG00000022169)	zgc:92591 (ENSELUG00000022181)	asic1c (ENSELUG00000022201)	cdk5 (ENSELUG00000022250)	abcb8 (ENSELUG00000022262)	atg9b (ENSELUG00000022336)	guk1a (ENSELUG00000022500) #20	zgc:63882 (ENSELUG00000022509) #22	arf1 (ENSELUG00000022533)	wnt3a (ENSELUG00000022562) #24	wnt9a (ENSELUG00000022603) #25	snap47 (ENSELUG00000022622) #27	jmjd4 (ENSELUG00000022668) #28	iba57 (ENSELUG00000022717) #19	gjc2 (ENSELUG00000022675)	cyp8b1.2 (ENSELUG00000026541)	ACKR2 (ENSELUG00000001350)	hig1a (ENSELUG00000022924)	CCDC13 (ENSELUG00000022950)	tmie (ENSELUG00000022982)	pth1r (ENSELUG00000023004)	myl13 (ENSELUG00000023063)	CRHR2 (ENSELUG00000023088)
Osteoglossiformes	ANCESTRAL SPECIES	36	ENSGT00940000154365.a.a	ENSGT00940000158974.cb	ENSGT01100000263569.a.a	ENSGT00940000164727	ENSGT00940000160805	ENSGT00940000159126	ENSGT00390000014839.a	ENSGT00970000196942	ENSGT00940000166913	ENSGT00940000154756.A #17	ENSGT00940000154756.B ##17	ENSGT00940000177473	ENSGT00940000177117	ENSGT00940000167421	ENSGT00940000155815.q #20	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00390000006465 #19	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000000596	ENSGT00940000164845	ENSGT00940000158574	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000156795
Asian bonytongue	MODERN SPECIES	22	gbx1 (ENSSFOG00015032296)	asb10 (ENSSFOG00015009013)	zgc:92591 (ENSSFOG00015028630)	asic1c (ENSSFOG00015009088)	cdk5 (ENSSFOG00015009165)	abcb8 (ENSSFOG00015009232)	atg9b (ENSSFOG00015009299)	ENSSFOG00015009318	ENSSFOG00015009333	ENSSFOG00015009339 #17	ENSSFOG00015009380 #17	ENSSFOG00015030541	ENSSFOG00015028600	ENSSFOG00015009441 #17	guk1a (ENSSFOG00015031278) #20	zgc:63882 (ENSSFOG00015009520) #22	ARF1 (ENSSFOG00015009538) #23	wnt3a (ENSSFOG00015009551) #24	wnt9a (ENSSFOG00015030621) #25	snap47 (ENSSFOG00015009631) #27	jmjd4 (ENSSFOG00015009681) #28	iba57 (ENSSFOG00015026995) #19	gjc2 (ENSSFOG00015009708)	ENSSFOG00015028458	CYP8B1 (ENSSFOG00015005627)	CYP8B1 (ENSSFOG00015026431)	CYP8B1 (ENSSFOG00015031207)	ACKR2 (ENSSFOG00015009784)	ENSSFOG00015009794	ENSSFOG00015009805	tmie (ENSSFOG00015014259)
P. kingsleyae	MODERN SPECIES	15	zgc:92591 (ENSPKIG00000004929)	ENSPKIG00000004980	cdk5 (ENSPKIG00000005046)	abcb8 (ENSPKIG00000005114)	atg9b (ENSPKIG00000005206)	ENSPKIG00000005248	ENSPKIG00000005273 #17	ENSPKIG00000005292 ##17	ENSPKIG00000005312	ENSPKIG00000005320 ##17	ENSPKIG00000005336	ENSPKIG00000005347	ENSPKIG00000005378 #17	ENSPKIG00000005403	guk1a (ENSPKIG00000005424) #20	zgc:63882 (ENSPKIG00000005451) #22	ARF1 (ENSPKIG00000005488) #23	wnt3a (ENSPKIG00000005529) #24	ENSPKIG00000005553	wnt9a (ENSPKIG00000005561) #25	snap47 (ENSPKIG00000005577) #27	ENSPKIG00000005599	jmjd4 (ENSPKIG00000005607) #28	iba57 (ENSPKIG00000005623) #19	gjc2 (ENSPKIG00000005631)	ACKR2 (ENSPKIG00000005651)	ENSPKIG00000005659	CCDC13 (ENSPKIG00000005675)	tmie (ENSPKIG00000005694)	pth1r (ENSPKIG00000005707)	myl13 (ENSPKIG00000005729)
Spotted gar	MODERN SPECIES	675	ENSLOCG00000008988	ENSLOCG00000009009	faim2a (ENSLOCG00000009020)	ENSLOCG00000009030	abcf2b (ENSLOCG00000009041)	CHPF2 (ENSLOCG00000009059)	smarcd3b (ENSLOCG00000009069)	ENSLOCG00000009092	ENSLOCG00000009102	ENSLOCG00000009117	ENSLOCG00000009126	ENSLOCG00000009134 #17	ENSLOCG00000009158 ##17	ENSLOCG00000009140 ##17	guk1b (ENSLOCG00000009170) #20	zgc:63882 (ENSLOCG00000009188) #22	ARF1 (ENSLOCG00000009197) #23	wnt3a (ENSLOCG00000009208) #24	wnt9a (ENSLOCG00000009215) #25	snap47 (ENSLOCG00000009233) #27	jmjd4 (ENSLOCG00000009240) #28	ENSLOCG00000009256	atg9b (ENSLOCG00000009263)	abcb8 (ENSLOCG00000009275)	cdk5 (ENSLOCG00000009292)	ENSLOCG00000009298	ENSLOCG00000009314	ENSLOCG00000018126	zgc:153738 (ENSLOCG00000009323)	asb10 (ENSLOCG00000009338)	gbx1 (ENSLOCG00000009350)
Reedfish	MODERN SPECIES	448																ENSECRG00000021919 #22
Elephant shark	MODERN SPECIES	1729											ENSCMIG00000016858	pudp (ENSCMIG00000016852)	ENSCMIG00000016849	ZFAT (ENSCMIG00000016838)	ST3GAL1 (ENSCMIG00000016834)	ENSCMIG00000016833 #22	ARF1 (ENSCMIG00000016821) #23