Amniota	ANCESTRAL SPECIES	7	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000153709.B	ENSGT01020000230359.E	ENSGT00940000154276	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000166800	ENSGT00940000158533
Mammalia	ANCESTRAL SPECIES	4	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01080000257342.H	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000163571	ENSGT00940000160086	ENSGT00940000166800	ENSGT00940000158533
Theria	ANCESTRAL SPECIES													ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00390000005082	ENSGT00940000161932	ENSGT00940000162829	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000163571	ENSGT00940000160086
Eutheria	ANCESTRAL SPECIES	46										ENSGT00390000016274	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Boreoeutheria	ANCESTRAL SPECIES	24			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a
Laurasiatheria	ANCESTRAL SPECIES	30			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a
Laurasiatheria_a	ANCESTRAL SPECIES	23			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.b	ENSGT01100000263486.a.b.a.b.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.a
Artiodactyla	ANCESTRAL SPECIES	31				ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Artiodactyla_a	ANCESTRAL SPECIES	7					ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00940000162743 #30	ENSGT00940000162181 #31	ENSGT01030000234648.a.b.a.b #32	ENSGT00940000162816 #34	ENSGT00940000162715 #35	ENSGT00940000156647 #36	ENSGT00940000158334	ENSGT00940000153503.a.a
Artiodactyla_b	ANCESTRAL SPECIES	8				ENSGT00940000154756.A.kd.a #13	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A.ld #14	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00940000162743 #30	ENSGT00940000162181 #31	ENSGT01030000234648.a.b.a.b #32	ENSGT00940000162816 #34	ENSGT00940000162715 #35	ENSGT00940000156647 #36	ENSGT00940000158334	ENSGT00940000153503.a.a
Cetacea	ANCESTRAL SPECIES	1	ENSGT00570000079564	ENSGT00390000018500.a	ENSGT01100000263552.g.b.a.a	ENSGT00940000161175	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.a	ENSGT00940000160371 #8	ENSGT00940000162155	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00390000009510 #12	ENSGT00940000154756.A.kd.a #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00940000162743 #30	ENSGT00940000162181 #31	ENSGT01030000234648.a.b.a.b #32	ENSGT00940000162816 #34	ENSGT00940000162715 #35	ENSGT00940000156647 #36	ENSGT00940000158334	ENSGT00940000153503.a.a
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.a	ENSGT00940000160371 #8	ENSGT00940000162155	ENSGT01100000263514.A.e.a.a.u.b #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00390000009510 #12	ENSGT00940000154756.A.ld #14	ENSGT00550000074800.x #16	ENSGT00990000211596 #17	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00940000162743 #30	ENSGT00940000162181 #31	ENSGT01030000234648.a.b.a.b #32	ENSGT00940000162816 #34	ENSGT00940000162715 #35	ENSGT00940000156647 #36	ENSGT00940000158334	ENSGT00940000153503.a.a
Sperm whale	MODERN SPECIES	11	ENSPCTG00005001917 #7	TRIM11 (ENSPCTG00005001906) #8	ENSPCTG00005001893 #9	H2AC25 (ENSPCTG00005001884) #10	H2BC26 (ENSPCTG00005001875) #11	RNF187 (ENSPCTG00005001868) #12	ENSPCTG00005001857 #13	ENSPCTG00005001845 #14	ENSPCTG00005001837 #15	ENSPCTG00005001826 #16	ENSPCTG00005001819 #17	IBA57 (ENSPCTG00005001814) #18	GJC2 (ENSPCTG00005001808) #19	GUK1 (ENSPCTG00005001793) #20	ENSPCTG00005001780 #21	C1orf35 (ENSPCTG00005001766) #22	ARF1 (ENSPCTG00005001753) #23	WNT3A (ENSPCTG00005001738) #24	WNT9A (ENSPCTG00005001728) #25	PRSS38 (ENSPCTG00005001709) #26	SNAP47 (ENSPCTG00005001687) #27	JMJD4 (ENSPCTG00005001672) #28	ZNF354B (ENSPCTG00005001661) #29	ZFP2 (ENSPCTG00005001642) #30	ZNF454 (ENSPCTG00005001630) #31	GRM6 (ENSPCTG00005001608) #32	ENSPCTG00005001587 #33	ZNF879 (ENSPCTG00005001578) #34	ZNF354C (ENSPCTG00005001563) #35	ADAMTS2 (ENSPCTG00005001538) #36	ENSPCTG00005001527 #37
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.a	ENSGT00940000160371 #8	ENSGT00940000162155	ENSGT01100000263514.A.e.a.a.u.b #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00390000009510 #12	ENSGT00940000154756.A.ld #14	ENSGT00550000074800.x #16	ENSGT00990000211596 #17	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00940000162743 #30	ENSGT00940000162181 #31	ENSGT01030000234648.a.b.a.b #32	ENSGT00940000162816 #34	ENSGT00940000162715 #35	ENSGT00940000156647 #36	ENSGT00940000158334	ENSGT00940000153503.a.a
Dolphin	MODERN SPECIES	784														ENSTTRG00000014194 #20	ENSTTRG00000014191	C1orf35 (ENSTTRG00000014189) #22	ARF1 (ENSTTRG00000014186) #23
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.a	ENSGT00940000160371 #8	ENSGT00940000162155	ENSGT01100000263514.A.e.a.a.u.b #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00390000009510 #12	ENSGT00940000154756.A.ld #14	ENSGT00550000074800.x #16	ENSGT00990000211596 #17	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00940000162743 #30	ENSGT00940000162181 #31	ENSGT01030000234648.a.b.a.b #32	ENSGT00940000155143.mb.b.a ##33	ENSGT00940000162816 #34	ENSGT00940000162715 #35	ENSGT00940000156647 #36	ENSGT00940000158334
Vaquita	MODERN SPECIES	14	PGBD2 (ENSPSNG00000003638)	ENSPSNG00000003658	TRIM11 (ENSPSNG00000003681) #8	TRIM17 (ENSPSNG00000003706)	ENSPSNG00000003725 #9	H2AC25 (ENSPSNG00000003735) #10	H2BC26 (ENSPSNG00000003742) #11	RNF187 (ENSPSNG00000003755) #12	ENSPSNG00000003780 #14	ENSPSNG00000003825 #14	ENSPSNG00000003866 #17	IBA57 (ENSPSNG00000007499) #18	GJC2 (ENSPSNG00000007534) #19	GUK1 (ENSPSNG00000007583) #20	MRPL55 (ENSPSNG00000007632) #21	C1orf35 (ENSPSNG00000007656) #22	ENSPSNG00000007683 #23	WNT3A (ENSPSNG00000007708) #24	WNT9A (ENSPSNG00000007743) #25	PRSS38 (ENSPSNG00000007771) #26	SNAP47 (ENSPSNG00000007830) #27	JMJD4 (ENSPSNG00000007858) #28	ZNF354B (ENSPSNG00000007886) #29	ZFP2 (ENSPSNG00000007917) #30	ZNF454 (ENSPSNG00000007949) #31	GRM6 (ENSPSNG00000007996) #32	ENSPSNG00000008070 ##33	ZNF879 (ENSPSNG00000008106) #34	ADAMTS2 (ENSPSNG00000008224) #36	RUFY1 (ENSPSNG00000008611)	ENSPSNG00000008738
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00940000161175	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.a	ENSGT00940000160371 #8	ENSGT00940000162155	ENSGT01100000263514.A.e.a.a.u.b #9	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00390000009510 #12	ENSGT00550000074800.x #16	ENSGT00990000211596 #17	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00940000162743 #30	ENSGT00940000162181 #31	ENSGT01030000234648.a.b.a.b #32	ENSGT00940000155143.mb.b.a ##33	ENSGT00940000162816 #34	ENSGT00940000162715 #35	ENSGT00940000156647 #36	ENSGT00940000158334
Narwhal	MODERN SPECIES	298	ZNF692 (ENSMMNG00015000156)	PGBD2 (ENSMMNG00015000125)	ENSMMNG00015000101	TRIM11 (ENSMMNG00015000075) #8	TRIM17 (ENSMMNG00015000054)	ENSMMNG00015000023 #9	H2AC25 (ENSMMNG00015000012) #10	H2BC26 (ENSMMNG00015004531) #11	RNF187 (ENSMMNG00015004520) #12	ENSMMNG00015003699 #16	ENSMMNG00015003686 #17	IBA57 (ENSMMNG00015003669) #18	GJC2 (ENSMMNG00015003654) #19	GUK1 (ENSMMNG00015003608) #20	MRPL55 (ENSMMNG00015003572) #21	C1orf35 (ENSMMNG00015003552) #22	ENSMMNG00015003538 #23	WNT3A (ENSMMNG00015003522) #24	WNT9A (ENSMMNG00015003510) #25	PRSS38 (ENSMMNG00015003487) #26	ENSMMNG00015003473	SNAP47 (ENSMMNG00015003455) #27	JMJD4 (ENSMMNG00015003436) #28	ZNF354B (ENSMMNG00015003424) #29	ZFP2 (ENSMMNG00015003397) #30	ZNF454 (ENSMMNG00015003376) #31	GRM6 (ENSMMNG00015003345) #32	ENSMMNG00015003325 ##33	ZNF879 (ENSMMNG00015003310) #34	ZNF354C (ENSMMNG00015003290) #35	ENSMMNG00015003278
Beluga whale	MODERN SPECIES	93	ZNF692 (ENSDLEG00000010201)	PGBD2 (ENSDLEG00000010227)	ENSDLEG00000010241	TRIM11 (ENSDLEG00000010252) #8	TRIM17 (ENSDLEG00000010270)	ENSDLEG00000010292 #9	H2AC25 (ENSDLEG00000010298) #10	H2BC26 (ENSDLEG00000010308) #11	RNF187 (ENSDLEG00000010320) #12	ENSDLEG00000011998 #16	ENSDLEG00000012007 #17	IBA57 (ENSDLEG00000012021) #18	GJC2 (ENSDLEG00000012033) #19	GUK1 (ENSDLEG00000012045) #20	MRPL55 (ENSDLEG00000012111) #21	ENSDLEG00000012123 #22	ENSDLEG00000012142	WNT3A (ENSDLEG00000012150) #24	WNT9A (ENSDLEG00000012170) #25	PRSS38 (ENSDLEG00000012200) #26	SNAP47 (ENSDLEG00000012222) #27	JMJD4 (ENSDLEG00000012232) #28	ZNF354B (ENSDLEG00000012249) #29	ZFP2 (ENSDLEG00000012263) #30	ZNF454 (ENSDLEG00000012270) #31	GRM6 (ENSDLEG00000012287) #32	ENSDLEG00000012347 ##33	ZNF879 (ENSDLEG00000012354) #34	ZNF354C (ENSDLEG00000012363) #35	ADAMTS2 (ENSDLEG00000012411) #36	ENSDLEG00000012767
Blue whale	MODERN SPECIES	14	PGBD2 (ENSBMSG00010000226)	ENSBMSG00010000207	ENSBMSG00010000187 #7	ENSBMSG00010000168	TRIM11 (ENSBMSG00010000144) #8	H2AC25 (ENSBMSG00010000131) #10	H2BC26 (ENSBMSG00010000114) #11	RNF187 (ENSBMSG00010000103) #12	ENSBMSG00010000077 #14	ENSBMSG00010008882 #14	ENSBMSG00010008859 #16	IBA57 (ENSBMSG00010008847) #18	GJC2 (ENSBMSG00010008838) #19	GUK1 (ENSBMSG00010008805) #20	ENSBMSG00010008778 #21	C1orf35 (ENSBMSG00010008763) #22	ENSBMSG00010008747 #23	WNT3A (ENSBMSG00010008734) #24	WNT9A (ENSBMSG00010008726) #25	PRSS38 (ENSBMSG00010008714) #26	SNAP47 (ENSBMSG00010008703) #27	JMJD4 (ENSBMSG00010008694) #28	ZNF354B (ENSBMSG00010008689) #29	ZFP2 (ENSBMSG00010008682) #30	ZNF454 (ENSBMSG00010008671) #31	GRM6 (ENSBMSG00010008657) #32	ZNF879 (ENSBMSG00010008639) #34	ENSBMSG00010008598	ENSBMSG00010008587 #36	ENSBMSG00010008570	RUFY1 (ENSBMSG00010008550)
Pecora	ANCESTRAL SPECIES		ENSGT00940000162816 #34	ENSGT01030000234648.a.b.a.b #32	ENSGT00940000162181 #31	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A.ld #14	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000009280	ENSCHYG00000009333	RNF187 (ENSCHYG00000009353) #12	ENSCHYG00000009390 ##11	H2AC25 (ENSCHYG00000009419) #10	H3-4 (ENSCHYG00000009438) ##9	TRIM17 (ENSCHYG00000009461)	TRIM11 (ENSCHYG00000009542) #8	ENSCHYG00000009620 #14	ENSCHYG00000009774 #14	ENSCHYG00000009985	IBA57 (ENSCHYG00000010014) #18	GJC2 (ENSCHYG00000010036) #19	GUK1 (ENSCHYG00000010059) #20	MRPL55 (ENSCHYG00000010212) #21	C1orf35 (ENSCHYG00000010289) #22	ENSCHYG00000010399 #23	WNT3A (ENSCHYG00000010445) #24	WNT9A (ENSCHYG00000010511) #25	PRSS38 (ENSCHYG00000010560) #26	SNAP47 (ENSCHYG00000010619) #27	JMJD4 (ENSCHYG00000010663) #28	ENSCHYG00000010707	ZNF354B (ENSCHYG00000010723) #29	ENSCHYG00000010766	ATP13A1 (ENSCHYG00000010816)	GMIP (ENSCHYG00000011272)	LPAR2 (ENSCHYG00000011542)	PBX4 (ENSCHYG00000011654)	CILP2 (ENSCHYG00000012104)	YJEFN3 (ENSCHYG00000012151)
Percora_a	ANCESTRAL SPECIES		ENSGT00940000162816 #34	ENSGT01030000234648.a.b.a.b #32	ENSGT00940000162181 #31	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A.ld #14	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Bovidae	ANCESTRAL SPECIES		ENSGT00940000162181 #31	ENSGT00940000162743 #30	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A.ld #14	ENSGT00940000154756.A.kd.b ##13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Bovinae	ANCESTRAL SPECIES	34	ENSGT01030000234648.a.b.a.b #32	ENSGT00940000162181 #31	ENSGT00940000162743 #30	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A.kd.b.a.a ##13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Bos	ANCESTRAL SPECIES	34	ENSGT00940000162181 #31	ENSGT00940000162743 #30	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00390000009312.n.b	ENSGT00940000154756.A.kd.b.a.a.b ##13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Bos_a	ANCESTRAL SPECIES	29	ENSGT00940000162181 #31	ENSGT00940000162743 #30	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00390000009312.n.b	ENSGT00940000154756.A.kd.b.a.a.a ##13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a
Domestic yak	MODERN SPECIES	27	ZNF354C (ENSBGRG00000003526) #35	GRM6 (ENSBGRG00000003481) #32	ZNF454 (ENSBGRG00000003460) #31	ENSBGRG00000003452	RNF187 (ENSBGRG00000003438) #12	H2AC25 (ENSBGRG00000003429) #10	H3-4 (ENSBGRG00000003421) ##9	ENSBGRG00000003415	TRIM17 (ENSBGRG00000003402)	TRIM11 (ENSBGRG00000003387) #8	ENSBGRG00000003375	IBA57 (ENSBGRG00000003172) #18	GJC2 (ENSBGRG00000003164) #19	GUK1 (ENSBGRG00000003137) #20	MRPL55 (ENSBGRG00000003109) #21	C1orf35 (ENSBGRG00000003092) #22	ARF1 (ENSBGRG00000003083) #23	WNT3A (ENSBGRG00000003066) #24	ENSBGRG00000003044	WNT9A (ENSBGRG00000003023) #25	PRSS38 (ENSBGRG00000002987) #26	SNAP47 (ENSBGRG00000002943) #27	JMJD4 (ENSBGRG00000002925) #28	ZNF354B (ENSBGRG00000002905) #29	ENSBGRG00000002896	ATP13A1 (ENSBGRG00000002465)	GMIP (ENSBGRG00000002278)	LPAR2 (ENSBGRG00000002227)	PBX4 (ENSBGRG00000002159)	CILP2 (ENSBGRG00000002130)	YJEFN3 (ENSBGRG00000002015)
Wild yak	MODERN SPECIES	610									ENSBMUG00000013557 #13	ENSBMUG00000013541 ##13	ENSBMUG00000013430 ##13	IBA57 (ENSBMUG00000013400) #18	GJC2 (ENSBMUG00000013389) #19	GUK1 (ENSBMUG00000013370) #20	MRPL55 (ENSBMUG00000013341) #21	C1orf35 (ENSBMUG00000013244) #22	ARF1 (ENSBMUG00000013231) #23	WNT3A (ENSBMUG00000013208) #24	WNT9A (ENSBMUG00000013188) #25	PRSS38 (ENSBMUG00000013170) #26	SNAP47 (ENSBMUG00000013160) #27	JMJD4 (ENSBMUG00000013129) #28	ZNF354B (ENSBMUG00000013110) #29
Bos_b	ANCESTRAL SPECIES	36	ENSGT01030000234648.a.b.a.b #32	ENSGT00940000162181 #31	ENSGT00940000162743 #30	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00390000009312.n.b	ENSGT00940000154756.A.kd.b.a.a.b ##13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Cow	MODERN SPECIES	26	ENSBTAG00000052690	RNF187 (ENSBTAG00000019667) #12	H2BC26 (ENSBTAG00000053467) #11	H2AC25 (ENSBTAG00000037964) #10	H3-4 (ENSBTAG00000055153) ##9	TRIM17 (ENSBTAG00000018673)	TRIM11 (ENSBTAG00000039246) #8	ENSBTAG00000007820	ENSBTAG00000040028 ##13	ENSBTAG00000051744 ##13	ENSBTAG00000049190 ##13	IBA57 (ENSBTAG00000014918) #18	GJC2 (ENSBTAG00000014916) #19	GUK1 (ENSBTAG00000014775) #20	MRPL55 (ENSBTAG00000020721) #21	C7H1orf35 (ENSBTAG00000020720) #22	ARF1 (ENSBTAG00000007725) #23	WNT3A (ENSBTAG00000039397) #24	WNT9A (ENSBTAG00000020267) #25	PRSS38 (ENSBTAG00000013977) #26	SNAP47 (ENSBTAG00000004188) #27	JMJD4 (ENSBTAG00000004191) #28	ZNF354B (ENSBTAG00000017123) #29	ENSBTAG00000052161	ATP13A1 (ENSBTAG00000007128)	GMIP (ENSBTAG00000015144)	LPAR2 (ENSBTAG00000004652)	PBX4 (ENSBTAG00000009975)	CILP2 (ENSBTAG00000014969)	YJEFN3 (ENSBTAG00000014968)	NDUFA13 (ENSBTAG00000007812)
Hybrid Bos Indicus	MODERN SPECIES	26	GRM6 (ENSBIXG00005029370) #32	ZNF454 (ENSBIXG00005029356) #31	RNF187 (ENSBIXG00005029336) #12	H2BC26 (ENSBIXG00005029334) #11	H2AC25 (ENSBIXG00005029330) #10	ENSBIXG00005029327	H3-4 (ENSBIXG00005029320) ##9	TRIM17 (ENSBIXG00005029306)	TRIM11 (ENSBIXG00005029289) #8	ENSBIXG00005029278	OBSCN (ENSBIXG00005010529) #14	ENSBIXG00005010951	IBA57 (ENSBIXG00005010975) #18	GUK1 (ENSBIXG00005011045) #20	MRPL55 (ENSBIXG00005011160) #21	C1orf35 (ENSBIXG00005001035) #22	ARF1 (ENSBIXG00005011212) #23	WNT3A (ENSBIXG00005011222) #24	WNT9A (ENSBIXG00005006783) #25	PRSS38 (ENSBIXG00005011238) #26	ENSBIXG00005011249	ENSBIXG00005001061	ENSBIXG00005011259	SNAP47 (ENSBIXG00005011285) #27	JMJD4 (ENSBIXG00005005916) #28	ENSBIXG00005000504	ZNF354B (ENSBIXG00005011307) #29	ENSBIXG00005011324	ATP13A1 (ENSBIXG00005011383)	GMIP (ENSBIXG00005011455)	LPAR2 (ENSBIXG00005011498)
American bison	MODERN SPECIES	3165				H3-4 (ENSBBBG00000004059) ##9	TRIM17 (ENSBBBG00000016399)	TRIM11 (ENSBBBG00000016378) #8	ENSBBBG00000016369 ##13	ENSBBBG00000016357 ##13	ENSBBBG00000016350 ##13	ENSBBBG00000016344 #14	ENSBBBG00000016327 #14	ENSBBBG00000016321	IBA57 (ENSBBBG00000016303) #18	GUK1 (ENSBBBG00000004041) #20	MRPL55 (ENSBBBG00000004037) #21	C1orf35 (ENSBBBG00000016183) #22	ARF1 (ENSBBBG00000016170) #23	WNT3A (ENSBBBG00000016145) #24	WNT9A (ENSBBBG00000016116) #25	PRSS38 (ENSBBBG00000016108) #26	SNAP47 (ENSBBBG00000007139) #27	JMJD4 (ENSBBBG00000016083) #28	ZNF354B (ENSBBBG00000016063) #29	ENSBBBG00000016056	ATP13A1 (ENSBBBG00000003990)	GMIP (ENSBBBG00000016022)	LPAR2 (ENSBBBG00000015996)	PBX4 (ENSBBBG00000015984)	CILP2 (ENSBBBG00000015975)	YJEFN3 (ENSBBBG00000015957)	NDUFA13 (ENSBBBG00000015950)
Caprinae	ANCESTRAL SPECIES	32	ENSGT01030000234648.a.b.a.b #32	ENSGT00940000162181 #31	ENSGT00940000162743 #30	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A.ld #14	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Goat	MODERN SPECIES	26	GRM6 (ENSCHIG00000024892) #32	ZNF454 (ENSCHIG00000013008) #31	ZFP2 (ENSCHIG00000010314) #30	ENSCHIG00000025835	RNF187 (ENSCHIG00000012732) #12	H2BC26 (ENSCHIG00000009284) #11	H2AC25 (ENSCHIG00000006649) #10	H3-4 (ENSCHIG00000008243) ##9	TRIM17 (ENSCHIG00000017072)	TRIM11 (ENSCHIG00000010660) #8	OBSCN (ENSCHIG00000026141) #14	IBA57 (ENSCHIG00000025813) #18	GJC2 (ENSCHIG00000012045) #19	GUK1 (ENSCHIG00000020301) #20	MRPL55 (ENSCHIG00000024153) #21	C1orf35 (ENSCHIG00000020666) #22	ARF1 (ENSCHIG00000010924) #23	WNT3A (ENSCHIG00000016159) #24	WNT9A (ENSCHIG00000009523) #25	ENSCHIG00000004906	SNAP47 (ENSCHIG00000025042) #27	JMJD4 (ENSCHIG00000001908) #28	ZNF354B (ENSCHIG00000024384) #29	ENSCHIG00000027175	ATP13A1 (ENSCHIG00000027146)	GMIP (ENSCHIG00000006935)	LPAR2 (ENSCHIG00000026267)	PBX4 (ENSCHIG00000020490)	CILP2 (ENSCHIG00000016599)	YJEFN3 (ENSCHIG00000022695)	NDUFA13 (ENSCHIG00000005106)
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020016295 #14	ZNF354C (ENSOARG00020016338) #35	GRM6 (ENSOARG00020016554) #32	ZNF454 (ENSOARG00020016811) #31	ZFP2 (ENSOARG00020016872) #30	RNF187 (ENSOARG00020016886) #12	HIST3H2BB (ENSOARG00020016921) #11	H2AC25 (ENSOARG00020016951) #10	H3-4 (ENSOARG00020016979) ##9	TRIM17 (ENSOARG00020017007)	TRIM11 (ENSOARG00020017090) #8	IBA57 (ENSOARG00020018299) #18	GJC2 (ENSOARG00020018337) #19	GUK1 (ENSOARG00020018354) #20	MRPL55 (ENSOARG00020018459) #21	C1orf35 (ENSOARG00020018506) #22	ARF1 (ENSOARG00020018572) #23	WNT3A (ENSOARG00020018613) #24	ENSOARG00020018666	WNT9A (ENSOARG00020018708) #25	PRSS38 (ENSOARG00020018766) #26	SNAP47 (ENSOARG00020018819) #27	ZNF354B (ENSOARG00020018905) #29	ENSOARG00020018960	ATP13A1 (ENSOARG00020019002)	GMIP (ENSOARG00020019185)	LPAR2 (ENSOARG00020019376)	CILP2 (ENSOARG00020019527)	YJEFN3 (ENSOARG00020019633)	NDUFA13 (ENSOARG00020019709)	TSSK6 (ENSOARG00020019749)
Siberian musk deer	MODERN SPECIES	1213	ZNF354C (ENSMMSG00000024233) #35	ZNF879 (ENSMMSG00000019906) #34	GRM6 (ENSMMSG00000019933) #32	ZNF454 (ENSMMSG00000019980) #31	RNF187 (ENSMMSG00000020017) #12	H2BC26 (ENSMMSG00000020045) #11	H2AC25 (ENSMMSG00000020054) #10	H3-4 (ENSMMSG00000020062) ##9	TRIM17 (ENSMMSG00000020070)	TRIM11 (ENSMMSG00000020106) #8	OBSCN (ENSMMSG00000020369) #14	IBA57 (ENSMMSG00000022482) #18	GJC2 (ENSMMSG00000022491) #19	GUK1 (ENSMMSG00000022498) #20	MRPL55 (ENSMMSG00000022520) #21	C1orf35 (ENSMMSG00000022529) #22	ARF1 (ENSMMSG00000022533) #23	WNT3A (ENSMMSG00000022541) #24	WNT9A (ENSMMSG00000022550) #25	PRSS38 (ENSMMSG00000022575) #26	ENSMMSG00000022591	SNAP47 (ENSMMSG00000022600) #27	JMJD4 (ENSMMSG00000022617) #28	ZNF354B (ENSMMSG00000022631) #29	ENSMMSG00000022637
Suina	ANCESTRAL SPECIES	56	ENSGT01100000263521.a.a.b.a.b.b	ENSGT00940000161175	ENSGT00940000163610	ENSGT00940000162327	ENSGT00390000006465 #18	ENSGT00940000154756.A #13	ENSGT00940000160371 #8	ENSGT00940000162155	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00390000009510 #12	ENSGT00940000163997	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Chacoan peccary	MODERN SPECIES	953	ZNF692 (ENSCWAG00000008595)	ENSCWAG00000008433	PGBD2 (ENSCWAG00000008376)	ENSCWAG00000020908	ENSCWAG00000020902	RNF187 (ENSCWAG00000020893) #12	H2BC26 (ENSCWAG00000020885) #11	H2AC25 (ENSCWAG00000020876) #10	TRIM17 (ENSCWAG00000020852)	TRIM11 (ENSCWAG00000020837) #8	OBSCN (ENSCWAG00000020667) #13	IBA57 (ENSCWAG00000020636) #18	GJC2 (ENSCWAG00000020627) #19	GUK1 (ENSCWAG00000020604) #20	MRPL55 (ENSCWAG00000020597) #21	C1orf35 (ENSCWAG00000020590) #22	ARF1 (ENSCWAG00000020582) #23	WNT3A (ENSCWAG00000020576) #24	WNT9A (ENSCWAG00000020570) #25	PRSS38 (ENSCWAG00000020558) #26	SNAP47 (ENSCWAG00000020551) #27	JMJD4 (ENSCWAG00000020541) #28	OR4A16 (ENSCWAG00000020533)	ENSCWAG00000020519	ENSCWAG00000020508	SHANK3 (ENSCWAG00000020472)	ARSA (ENSCWAG00000020433)	MAPK8IP2 (ENSCWAG00000020407)	CHKB (ENSCWAG00000020388)	CPT1B (ENSCWAG00000020353)	SYCE3 (ENSCWAG00000020334)
Pig	MODERN SPECIES	10	ENSSSCG00000013976	PGBD2 (ENSSSCG00000033305)	ENSSSCG00000039611	ENSSSCG00000013980	ENSSSCG00000026598	ENSSSCG00000059454	TRIM11 (ENSSSCG00000035985) #8	TRIM17 (ENSSSCG00000014000)	H2AC25 (ENSSSCG00000047900) #10	H2BC26 (ENSSSCG00000061158) #11	RNF187 (ENSSSCG00000032994) #12	OBSCN (ENSSSCG00000034569) #13	GJC2 (ENSSSCG00000013989) #19	ENSSSCG00000013990 #20	MRPL55 (ENSSSCG00000029050) #21	C1orf35 (ENSSSCG00000013991) #22	ARF1 (ENSSSCG00000013992) #23	WNT3A (ENSSSCG00000029870) #24	WNT9A (ENSSSCG00000024671) #25	ENSSSCG00000048546	ENSSSCG00000057198	SNAP47 (ENSSSCG00000013984) #27	JMJD4 (ENSSSCG00000013983) #28	ENSSSCG00000036276	ENSSSCG00000014467	ENSSSCG00000040165	ENSSSCG00000032924	ENSSSCG00000042508	ENSSSCG00000038176	ENSSSCG00000043165	WEE1 (ENSSSCG00000013411)
Laurasiatheria_b	ANCESTRAL SPECIES	24									ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260086.C.a.b.a.a	ENSGT01090000260044.D.b.a.b	ENSGT01090000260086.C.a.b.b	ENSGT01090000260086.C.a.a	ENSGT01090000260045.C.e.a.b
Laurasiatheria_c	ANCESTRAL SPECIES	29			ENSGT01030000234553.b.b.d.c.a	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.b.c.a.a.b.b
Chiroptera	ANCESTRAL SPECIES	75				ENSGT01030000234553.b.b.d.c.a	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.b.c.a.a.b.b	ENSGT01090000260045.C.e.a.b	ENSGT00940000162246
Megabat	MODERN SPECIES	1066														IBA57 (ENSPVAG00000007389) #18	ENSPVAG00000007385 #20	C1orf35 (ENSPVAG00000007384) #22	ARF1 (ENSPVAG00000007383) #23
Microchiroptera	ANCESTRAL SPECIES	63				ENSGT01030000234553.b.b.d.c.a	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.b.c.a.a.b.b	ENSGT01090000260045.C.e.a.b	ENSGT00940000162246
Microbat	MODERN SPECIES	1315								ENSMLUG00000017530	AFG1L (ENSMLUG00000002580)	ENSMLUG00000002590	ARMC2 (ENSMLUG00000006860)	SESN1 (ENSMLUG00000006886)	CEP57L1 (ENSMLUG00000005850)	ENSMLUG00000003777	CD164 (ENSMLUG00000003783)	ENSMLUG00000023748 #22	PPIL6 (ENSMLUG00000003789)	SMPD2 (ENSMLUG00000003793)	MICAL1 (ENSMLUG00000003799)	ENSMLUG00000029807	ZBTB24 (ENSMLUG00000029884)	ENSMLUG00000003816
Greater horseshoe bat	MODERN SPECIES	16	NLRP3 (ENSRFEG00010011921)	ENSRFEG00010012199	ZNF496 (ENSRFEG00010012279)	ENSRFEG00010012356	ENSRFEG00010012392	RNF187 (ENSRFEG00010012412) #12	H2AC25 (ENSRFEG00010012511) #10	H3-4 (ENSRFEG00010012529) ##9	TRIM17 (ENSRFEG00010012551)	TRIM11 (ENSRFEG00010012738) #8	OBSCN (ENSRFEG00010012968) #13	IBA57 (ENSRFEG00010020284) #18	GJC2 (ENSRFEG00010020305) #19	ENSRFEG00010020344 #20	MRPL55 (ENSRFEG00010020427) #21	ENSRFEG00010020459 #22	ENSRFEG00010020502 #23	WNT3A (ENSRFEG00010020529) #24	WNT9A (ENSRFEG00010020564) #25	PRSS38 (ENSRFEG00010020586) #26	SNAP47 (ENSRFEG00010020620) #27	JMJD4 (ENSRFEG00010020639) #28	ENSRFEG00010020667	ZFP2 (ENSRFEG00010020696) #30	ZNF454 (ENSRFEG00010020708) #31	GRM6 (ENSRFEG00010020725) #32	ZNF879 (ENSRFEG00010020752) #34	ZNF354C (ENSRFEG00010020767) #35	ADAMTS2 (ENSRFEG00010020822) #36	ENSRFEG00010020942	ENSRFEG00010020957
Equus	ANCESTRAL SPECIES	6	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.b	ENSGT00940000162415	ENSGT00940000161967	ENSGT01030000234553.b.b.d.d	ENSGT00940000163997.m	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Donkey	MODERN SPECIES	29	ENSEASG00005017964	ENSEASG00005017951	ENSEASG00005035367	ENSEASG00005024868	ENSEASG00005017961 #12	ENSEASG00005029469	H2BC26 (ENSEASG00005026831) #11	ENSEASG00005035131	TRIM17 (ENSEASG00005017955)	TRIM11 (ENSEASG00005017954) #8	OBSCN (ENSEASG00005017625) #13	ENSEASG00005033564 #18	GJC2 (ENSEASG00005017541) #19	GUK1 (ENSEASG00005017539) #20	MRPL55 (ENSEASG00005024877) #21	C1orf35 (ENSEASG00005017537) #22	ENSEASG00005036953	WNT3A (ENSEASG00005010564) #24	WNT9A (ENSEASG00005017530) #25	PRSS38 (ENSEASG00005017526) #26	ENSEASG00005023983	SNAP47 (ENSEASG00005017519) #27	JMJD4 (ENSEASG00005017516) #28
Horse	MODERN SPECIES	5	OR2W29 (ENSECAG00000001770)	OR2B11 (ENSECAG00000002900)	NLRP3 (ENSECAG00000015382)	ZNF496 (ENSECAG00000015844)	ENSECAG00000033206	ENSECAG00000032464	ENSECAG00000040368	RNF187 (ENSECAG00000016200) #12	H2BC26 (ENSECAG00000048080) #11	ENSECAG00000059949 ##11	TRIM17 (ENSECAG00000039891)	TRIM11 (ENSECAG00000016373) #8	OBSCN (ENSECAG00000016720) #13	IBA57 (ENSECAG00000006335) #18	GJC2 (ENSECAG00000037673) #19	ENSECAG00000059239 #22	GUK1 (ENSECAG00000019280) #20	ARF1 (ENSECAG00000032327) #23	WNT3A (ENSECAG00000028812) #24	WNT9A (ENSECAG00000020178) #25	PRSS38 (ENSECAG00000020942) #26	SNAP47 (ENSECAG00000020954) #27	JMJD4 (ENSECAG00000021407) #28
Carnivora	ANCESTRAL SPECIES	28	ENSGT01090000259995.a.a.b.a.b.a	ENSGT01030000234553.b.b.d.c.a	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Felidae	ANCESTRAL SPECIES	6	ENSGT00940000162415	ENSGT00940000161967	ENSGT01090000259995.a.a.b.a.b.a	ENSGT00940000158017.d	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00530000063632.B	ENSGT00940000162750	ENSGT00940000160338	ENSGT01090000260018.A.a.b.a	ENSGT01090000260018.D.d.a	ENSGT01090000260018.D.d.b	ENSGT01030000234669.A	ENSGT00940000154294.k.a.b	ENSGT00940000154461
Cat	MODERN SPECIES		NLRP3 (ENSFCAG00000009344)	ZNF496 (ENSFCAG00000023658)	ENSFCAG00000027675	ENSFCAG00000052462	ENSFCAG00000051175	RNF187 (ENSFCAG00000042348) #12	H2BC27P (ENSFCAG00000024427) ##11	H2BC26 (ENSFCAG00000032040) #11	H2AC25 (ENSFCAG00000024530) #10	TRIM17 (ENSFCAG00000029709)	TRIM11 (ENSFCAG00000046756) #8	IBA57 (ENSFCAG00000000672) #18	GJC2 (ENSFCAG00000007130) #19	GUK1 (ENSFCAG00000025872) #20	MRPL55 (ENSFCAG00000015199) #21	CA1H1orf35 (ENSFCAG00000022579) #22	ARF1 (ENSFCAG00000029374) #23	WNT3A (ENSFCAG00000036791) #24	WNT9A (ENSFCAG00000046271) #25	PRSS38 (ENSFCAG00000002338) #26	ENSFCAG00000022992	SNAP47 (ENSFCAG00000015614) #27	JMJD4 (ENSFCAG00000015612) #28	ENSFCAG00000051518	MGAT1 (ENSFCAG00000015344)	ZFP62 (ENSFCAG00000029931)	ENSFCAG00000047273	ENSFCAG00000041675	ENSFCAG00000046579	ENSFCAG00000030220	ENSFCAG00000024505
Panthera	ANCESTRAL SPECIES	6	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415	ENSGT00940000161967	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00530000063632.B	ENSGT00940000162750	ENSGT00940000160338	ENSGT01090000260018.A.a.b.a	ENSGT01090000260018.D.d.b	ENSGT01030000234669.A	ENSGT00940000154294.k.a.b	ENSGT00940000154461	ENSGT00940000154294.k.b
Panthera_a	ANCESTRAL SPECIES	3	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263548.b.a.a.a.a.a	ENSGT00940000162415	ENSGT00940000161967	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00530000063632.B	ENSGT00940000162750	ENSGT00940000160338	ENSGT01090000260018.A.a.b.a	ENSGT01090000260018.D.d.b	ENSGT01030000234669.A	ENSGT00940000154294.k.a.b	ENSGT00940000154461	ENSGT00940000154294.k.b
lion	MODERN SPECIES		ZNF496 (ENSPLOG00000000182)	ENSPLOG00000000176	ENSPLOG00000000167	ENSPLOG00000000153	RNF187 (ENSPLOG00000000130) #12	H2BC26 (ENSPLOG00000000122) #11	H2AC25 (ENSPLOG00000000118) #10	TRIM17 (ENSPLOG00000000102)	TRIM11 (ENSPLOG00000000094) #8	ENSPLOG00000000078 #13	ENSPLOG00000000051 #13	IBA57 (ENSPLOG00000000043) #18	GJC2 (ENSPLOG00000000039) #19	GUK1 (ENSPLOG00000000033) #20	MRPL55 (ENSPLOG00000000024) #21	C1orf35 (ENSPLOG00000000019) #22	ARF1 (ENSPLOG00000000016) #23	WNT3A (ENSPLOG00000000013) #24	WNT9A (ENSPLOG00000000004) #25	PRSS38 (ENSPLOG00000003023) #26	ENSPLOG00000003011	SNAP47 (ENSPLOG00000002987) #27	JMJD4 (ENSPLOG00000002956) #28	MGAT1 (ENSPLOG00000002940)	ZFP62 (ENSPLOG00000002927)	ENSPLOG00000002906	ENSPLOG00000002893	ENSPLOG00000002848	TRIM7 (ENSPLOG00000002799)	TRIM41 (ENSPLOG00000002727)	RACK1 (ENSPLOG00000002660)
leopard	MODERN SPECIES	209								H2BC26 (ENSPPRG00000010835) #11	H2AC25 (ENSPPRG00000010830) #10	TRIM17 (ENSPPRG00000010041)	TRIM11 (ENSPPRG00000010008) #8	IBA57 (ENSPPRG00000005609) #18	GJC2 (ENSPPRG00000010713) #19	GUK1 (ENSPPRG00000005299) #20	MRPL55 (ENSPPRG00000004595) #21	C1orf35 (ENSPPRG00000004048) #22	ARF1 (ENSPPRG00000003870) #23	ENSPPRG00000022172 #24	WNT3A (ENSPPRG00000003561) #24	WNT9A (ENSPPRG00000003274) #25	PRSS38 (ENSPPRG00000003250) #26	SNAP47 (ENSPPRG00000002689) #27
Caniformia	ANCESTRAL SPECIES	34		ENSGT01030000234553.b.b.d.c.a	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Caniformia_b	ANCESTRAL SPECIES	41		ENSGT01030000234553.b.b.d.c.a.d	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A.gd.b #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Ursidae	ANCESTRAL SPECIES	59		ENSGT01030000234553.b.b.d.c.a.d	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A.hd #13	ENSGT00390000006465 #18	ENSGT00940000154756.A.gd.b #13	ENSGT00940000155815 #20	ENSGT00390000010309.a #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Giant Panda	MODERN SPECIES	13				ENSAMEG00000014310 #12	ENSAMEG00000024010	ENSAMEG00000028006 ##11	H2BC26 (ENSAMEG00000026668) #11	H2AW (ENSAMEG00000025465) #10	H3-4 (ENSAMEG00000031491) ##9	TRIM17 (ENSAMEG00000014312)	ENSAMEG00000023964 #8	ENSAMEG00000023921 #18	ENSAMEG00000016258 #13	ENSAMEG00000016280 #20	ENSAMEG00000016292 #21	C1orf35 (ENSAMEG00000016295) #22	ARF1 (ENSAMEG00000030995) #23	WNT3A (ENSAMEG00000004256) #24	WNT9A (ENSAMEG00000027387) #25	PRSS38 (ENSAMEG00000007189) #26	SNAP47 (ENSAMEG00000009252) #27	JMJD4 (ENSAMEG00000018153) #28	ENSAMEG00000029442	ENSAMEG00000030449	ENSAMEG00000029726	OR14C36 (ENSAMEG00000013199)	ENSAMEG00000028922	ENSAMEG00000019418	ENSAMEG00000028797	OR2T6 (ENSAMEG00000019566)	OR2T1 (ENSAMEG00000019571)
Ursus	ANCESTRAL SPECIES	192			ENSGT01030000234553.b.b.d.c.a.d	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT01020000230360.c.b.a.b.b.d	ENSGT01100000263514.A.f ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A.hd #13	ENSGT00390000006465 #18	ENSGT00940000155815 #20	ENSGT00390000010309.a #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000169575	ENSGT00940000159380 #28
American black bear	MODERN SPECIES	4759													IBA57 (ENSUAMG00000016474) #18	GUK1 (ENSUAMG00000016469) #20	ENSUAMG00000016465 #21	C1orf35 (ENSUAMG00000016462) #22	ARF1 (ENSUAMG00000016459) #23
Mustelinae	ANCESTRAL SPECIES	159		ENSGT01030000234553.b.b.d.c.a.d	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A.gd.b #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
American mink	MODERN SPECIES	522				ENSNVIG00000001218 ##11	H2BC26 (ENSNVIG00000001207) #11	H2AC25 (ENSNVIG00000001203) #10	H3-4 (ENSNVIG00000001199) ##9	TRIM17 (ENSNVIG00000001165)	TRIM11 (ENSNVIG00000001136) #8	ENSNVIG00000001101 #13	ENSNVIG00000001052 #13	IBA57 (ENSNVIG00000001008) #18	GJC2 (ENSNVIG00000001001) #19	GUK1 (ENSNVIG00000000938) #20	MRPL55 (ENSNVIG00000000896) #21	C1orf35 (ENSNVIG00000000876) #22	ARF1 (ENSNVIG00000000852) #23	WNT3A (ENSNVIG00000023755) #24	WNT9A (ENSNVIG00000023751) #25	PRSS38 (ENSNVIG00000023749) #26	SNAP47 (ENSNVIG00000023746) #27	JMJD4 (ENSNVIG00000023741) #28
Ferret	MODERN SPECIES	525	ENSMPUG00000001090	ENSMPUG00000018546	ENSMPUG00000001088	ENSMPUG00000001085 #12	ENSMPUG00000001083 ##11	H2BC26 (ENSMPUG00000018539) #11	H2AC25 (ENSMPUG00000018534) #10	H3-4 (ENSMPUG00000018529) ##9	TRIM11 (ENSMPUG00000001081) #8	ENSMPUG00000001079	ENSMPUG00000001077 #13	ENSMPUG00000001039 #13	IBA57 (ENSMPUG00000001035) #18	GUK1 (ENSMPUG00000001011) #20	MRPL55 (ENSMPUG00000001004) #21	C1orf35 (ENSMPUG00000000996) #22	ARF1 (ENSMPUG00000000962) #23	WNT3A (ENSMPUG00000000960) #24	WNT9A (ENSMPUG00000000947) #25	PRSS38 (ENSMPUG00000000932) #26	SNAP47 (ENSMPUG00000000929) #27	JMJD4 (ENSMPUG00000000927) #28
Canidae	ANCESTRAL SPECIES	64				ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815.c #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT01090000260086.E.b	ENSGT00940000162666	ENSGT01090000259995.b.b.a.a.b.j.b	ENSGT01090000259995.b.b.a.a.b.i.a.a.a.b	ENSGT01090000259995.b.b.a.a.b.j.a	ENSGT01090000259995.b.b.b	ENSGT01100000263486.a.b.a.b.b.a.a	ENSGT00940000162246	ENSGT01090000260045.C.e.a.b
Red fox	MODERN SPECIES	291						ENSVVUG00000030366	ENSVVUG00000030367	ENSVVUG00000030369 ##11	H2BC26 (ENSVVUG00000030370) #11	H2AC25 (ENSVVUG00000030371) #10	TRIM17 (ENSVVUG00000030372)	TRIM11 (ENSVVUG00000030373) #8	IBA57 (ENSVVUG00000030375) #18	ENSVVUG00000030376 #19	ENSVVUG00000030377 #20	ENSVVUG00000030378 #22	ARF1 (ENSVVUG00000030379)	WNT3A (ENSVVUG00000030380) #24	WNT9A (ENSVVUG00000030381) #25	PRSS38 (ENSVVUG00000030382) #26
Canis_lupus	ANCESTRAL SPECIES	51		ENSGT00940000163997.h	ENSGT00940000163997.g	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000160426	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A.fd #13	ENSGT00940000154756.A.ed #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815.c #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.jb #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT01090000260086.E.b	ENSGT00940000162666	ENSGT01090000259995.b.b.a.a.b.j.b	ENSGT00390000000053.t	ENSGT01090000259995.b.b.a.a.b.i.a.a.a.b	ENSGT01090000259995.b.b.a.a.b.j.a	ENSGT01090000259995.b.b.b	ENSGT01100000263486.a.b.a.b.b.a.a	ENSGT00940000162246
Dog	MODERN SPECIES	5	ENSCAFG00845006907	ENSCAFG00845006991	ENSCAFG00845007077 #12	ENSCAFG00845007128 ##11	H2BC26 (ENSCAFG00845007167) #11	HIST3H2A (ENSCAFG00845007204) #10	TRIM17 (ENSCAFG00845007329) #8	ENSCAFG00845007457 #13	ENSCAFG00845007586 #13	ENSCAFG00845007619 #13	ENSCAFG00845007646 #13	IBA57 (ENSCAFG00845007710) #18	GJC2 (ENSCAFG00845007738) #19	GUK1 (ENSCAFG00845007785) #20	MRPL55 (ENSCAFG00845007834) #21	C1orf35 (ENSCAFG00845007876) #22	ARF1 (ENSCAFG00845007924) #23	WNT3A (ENSCAFG00845007960) #24	WNT9A (ENSCAFG00845008006) #25	PRSS38 (ENSCAFG00845008050) #26	SNAP47 (ENSCAFG00845008129) #27	JMJD4 (ENSCAFG00845008215) #28	ENSCAFG00845008246	ENSCAFG00845008271	ENSCAFG00845008294	OR2L3B (ENSCAFG00845008326)	ENSCAFG00845008351	OR2L17 (ENSCAFG00845008368)	OR2L5C (ENSCAFG00845008412)	ENSCAFG00845008436	OR2AJ7 (ENSCAFG00845008461)
Dingo	MODERN SPECIES	372	ENSCAFG00020005896 ##11	H2BC26 (ENSCAFG00020005888) #11	ENSCAFG00020005861	TRIM17 (ENSCAFG00020005854)	TRIM11 (ENSCAFG00020005850) #8	ENSCAFG00020005824 #13	ENSCAFG00020005817 #13	ENSCAFG00020005814 #13	ENSCAFG00020005812 #13	ENSCAFG00020005800 #13	ENSCAFG00020005782 #13	ENSCAFG00020005770 #13	IBA57 (ENSCAFG00020005762) #18	ENSCAFG00020005747 #20	MRPL55 (ENSCAFG00020005742) #21	ENSCAFG00020005738 #22	ARF1 (ENSCAFG00020005724) #23	WNT3A (ENSCAFG00020005706) #24	WNT9A (ENSCAFG00020005694) #25	PRSS38 (ENSCAFG00020005690) #26	SNAP47 (ENSCAFG00020005687) #27	JMJD4 (ENSCAFG00020005670) #28	ENSCAFG00020005667	OR6F1 (ENSCAFG00020005660)	OR13G1 (ENSCAFG00020005659)	ENSCAFG00020005654	ENSCAFG00020005648	ENSCAFG00020005647	ENSCAFG00020005642	OR2AJ1 (ENSCAFG00020005638)	OR2W3 (ENSCAFG00020005631)
Eulipotyphla	ANCESTRAL SPECIES	2229																ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23
Hedgehog	MODERN SPECIES	8406																C1orf35 (ENSEEUG00000004717) #22	ARF1 (ENSEEUG00000004638) #23
Euarchontoglires	ANCESTRAL SPECIES	25			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.b	ENSGT01100000263486.a.b.a.b.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.a
Euarchontoglires_A	ANCESTRAL SPECIES	28			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.a.b	ENSGT01060000248581.C.a.a
Glires	ANCESTRAL SPECIES	29			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.a.b	ENSGT01060000248581.C.a.a
Rodentia	ANCESTRAL SPECIES	7			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b
Rodentia_B	ANCESTRAL SPECIES	46	ENSGT00940000162246	ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b
Myomorpha	ANCESTRAL SPECIES	28	ENSGT00390000006224	ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b
Muroidea	ANCESTRAL SPECIES	10	ENSGT00390000006224	ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT00940000155286	ENSGT00390000004368
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT00940000155286	ENSGT00390000004368
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864	ENSGT00940000153653.a.b.a.b
Prairie vole	MODERN SPECIES	15	ENSMOCG00000003250	Zfp39 (ENSMOCG00000017961)	Btnl10 (ENSMOCG00000005486)	Rnf187 (ENSMOCG00000021645)	H2bc27 (ENSMOCG00000002061) ##11	H2bc26-ps (ENSMOCG00000003080) #11	H2ac25 (ENSMOCG00000002942) #10	H3f4 (ENSMOCG00000002973) ##9	Trim17 (ENSMOCG00000016644)	Trim11 (ENSMOCG00000021941) #8	Obscn (ENSMOCG00000009245) #13	Iba57 (ENSMOCG00000019048) #18	Gjc2 (ENSMOCG00000015445) #19	Guk1 (ENSMOCG00000020868) #20	Mrpl55 (ENSMOCG00000022355) #21	2310033P09Rik (ENSMOCG00000020633) #22	Arf1 (ENSMOCG00000005344) #23	Wnt3a (ENSMOCG00000022805) #24	Wnt9a (ENSMOCG00000022972) #25	Prss38 (ENSMOCG00000020492) #26	Snap47 (ENSMOCG00000021698) #27	Jmjd4 (ENSMOCG00000019517) #28	Zfp867 (ENSMOCG00000017475)	Zkscan17 (ENSMOCG00000021773)	ENSMOCG00000007500	ENSMOCG00000004021	Nlrp3 (ENSMOCG00000022962)	Or2b11 (ENSMOCG00000002219)	Or2w25 (ENSMOCG00000002703)	ENSMOCG00000002772	ENSMOCG00000020749
Northern American deer mouse	MODERN SPECIES	21	2810021J22Rik (ENSPEMG00000028205)	Zfp39 (ENSPEMG00000009428)	Btnl10 (ENSPEMG00000010544)	ENSPEMG00000024885 #12	H2bc27 (ENSPEMG00000029370) ##11	H2bc26-ps (ENSPEMG00000029564) #11	H2ac25 (ENSPEMG00000025825) #10	H3f4 (ENSPEMG00000028465) ##9	Trim17 (ENSPEMG00000012957)	Trim11 (ENSPEMG00000013300) #8	Obscn (ENSPEMG00000017360) #13	Iba57 (ENSPEMG00000029448) #18	Gjc2 (ENSPEMG00000015748) #19	Guk1 (ENSPEMG00000007733) #20	Mrpl55 (ENSPEMG00000010381) #21	2310033P09Rik (ENSPEMG00000016726) #22	Arf1 (ENSPEMG00000024884) #23	Wnt3a (ENSPEMG00000014970) #24	Wnt9a (ENSPEMG00000008917) #25	ENSPEMG00000026476	Prss38 (ENSPEMG00000000315) #26	Snap47 (ENSPEMG00000003186) #27	Jmjd4 (ENSPEMG00000025158) #28	Zfp867 (ENSPEMG00000015201)	Zkscan17 (ENSPEMG00000028678)	Nlrp3 (ENSPEMG00000018349)	Or2b11 (ENSPEMG00000027692)	ENSPEMG00000027834	Mprip (ENSPEMG00000005808)	Pld6 (ENSPEMG00000002262)	Flcn (ENSPEMG00000001290)
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT00940000155286	ENSGT00390000004368
Golden Hamster	MODERN SPECIES	627	Zfp39 (ENSMAUG00000001536)	Btnl10 (ENSMAUG00000021399)	ENSMAUG00000020727	ENSMAUG00000021471 #12	H2bc27 (ENSMAUG00000010540) ##11	H2bc26-ps (ENSMAUG00000010794) #11	H2ac25 (ENSMAUG00000010628) #10	ENSMAUG00000010470	H3f4 (ENSMAUG00000010700) ##9	Trim17 (ENSMAUG00000004817)	Trim11 (ENSMAUG00000001510) #8	Obscn (ENSMAUG00000022279) #13	Iba57 (ENSMAUG00000020575) #18	Gjc2 (ENSMAUG00000020150) #19	Guk1 (ENSMAUG00000022283) #20	2310033P09Rik (ENSMAUG00000019958) #22	ENSMAUG00000022253 #23	Wnt3a (ENSMAUG00000021475) #24	Wnt9a (ENSMAUG00000021643) #25	Prss38 (ENSMAUG00000019978) #26	Snap47 (ENSMAUG00000020014) #27	Jmjd4 (ENSMAUG00000017265) #28	ENSMAUG00000019046	Zkscan17 (ENSMAUG00000016630)	ENSMAUG00000017910	ENSMAUG00000006329	Nlrp3 (ENSMAUG00000020051)	Or2b11 (ENSMAUG00000010476)	Or2w25 (ENSMAUG00000020886)	ENSMAUG00000015837	Pld6 (ENSMAUG00000013977)
Chinese hamster chok1gshd	MODERN SPECIES	229	2810021J22Rik (ENSCGRG00001001041)	Zfp39 (ENSCGRG00001002406)	ENSCGRG00001015992	ENSCGRG00001017170 #12	H2ac25 (ENSCGRG00001008750) #10	H2bc26-ps (ENSCGRG00001013795) #11	H2bc27 (ENSCGRG00001005703) ##11	ENSCGRG00001009610 ##9	Trim17 (ENSCGRG00001017038)	Trim11 (ENSCGRG00001016227) #8	Obscn (ENSCGRG00001023809) #13	Iba57 (ENSCGRG00001007484) #18	Gjc2 (ENSCGRG00001008796) #19	ENSCGRG00001016847 #20	Mrpl55 (ENSCGRG00001020506) #21	2310033P09Rik (ENSCGRG00001021154) #22	Arf1 (ENSCGRG00001013922) #23	Wnt3a (ENSCGRG00001015217) #24	Wnt9a (ENSCGRG00001016816) #25	Prss38 (ENSCGRG00001019522) #26	Snap47 (ENSCGRG00001004500) #27	Jmjd4 (ENSCGRG00001013252) #28	Zfp867 (ENSCGRG00001016010)	Zkscan17 (ENSCGRG00001020767)	ENSCGRG00001021260	Nlrp3 (ENSCGRG00001021138)	Or2b11 (ENSCGRG00001008156)	Or2aa1 (ENSCGRG00001007439)	ENSCGRG00001005098	Mprip (ENSCGRG00001003308)	Pld6 (ENSCGRG00001021455)
Murinae	ANCESTRAL SPECIES	7	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00950000183522	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864
Mus	ANCESTRAL SPECIES	2	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00950000183522	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00950000183522	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.g.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00950000183522	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.g.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000159981.e.a	ENSGT00940000160177	ENSGT00940000163997	ENSGT00950000183522	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.g.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00950000182755.b.a.a.a.a.b	ENSGT00940000161967	ENSGT00900000143207	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT00940000155286	ENSGT00390000004368	ENSGT00390000009864
spretus	MODERN SPECIES	2	Fam183b (MGP_SPRETEiJ_G0017251)	Gm12258 (MGP_SPRETEiJ_G0017252)	2810021J22Rik (MGP_SPRETEiJ_G0017253)	Zfp39 (MGP_SPRETEiJ_G0017254)	Btnl10 (MGP_SPRETEiJ_G0017255)	MGP_SPRETEiJ_G0017256	H2bc27 (MGP_SPRETEiJ_G0017257) ##11	H2ac25 (MGP_SPRETEiJ_G0017258) #10	Trim17 (MGP_SPRETEiJ_G0017259)	Trim11 (MGP_SPRETEiJ_G0017260) #8	Obscn (MGP_SPRETEiJ_G0017261) #13	Iba57 (MGP_SPRETEiJ_G0017262) #18	Gjc2 (MGP_SPRETEiJ_G0017263) #19	Guk1 (MGP_SPRETEiJ_G0017264) #20	Mrpl55 (MGP_SPRETEiJ_G0017265) #21	2310033P09Rik (MGP_SPRETEiJ_G0017266) #22	Wnt3a (MGP_SPRETEiJ_G0017267) #24	Wnt9a (MGP_SPRETEiJ_G0017268) #25	Prss38 (MGP_SPRETEiJ_G0017269) #26	Snap47 (MGP_SPRETEiJ_G0017270) #27	Jmjd4 (MGP_SPRETEiJ_G0017271) #28	Zfp867 (MGP_SPRETEiJ_G0017272)	Zkscan17 (MGP_SPRETEiJ_G0017273)	Nlrp3 (MGP_SPRETEiJ_G0017274)	Or2b11 (MGP_SPRETEiJ_G0017275)	MGP_SPRETEiJ_G0017276	MGP_SPRETEiJ_G0009402	Mprip (MGP_SPRETEiJ_G0017277)	Pld6 (MGP_SPRETEiJ_G0017278)	Flcn (MGP_SPRETEiJ_G0017279)	Cops3 (MGP_SPRETEiJ_G0017280)
Steppe mouse	MODERN SPECIES	3105	Btnl10 (ENSMSIG00000021827)	ENSMSIG00000021818	H2bc27 (ENSMSIG00000021813) ##11	H2bc26-ps (ENSMSIG00000021777) #11	H2ac25 (ENSMSIG00000021773) #10	H3f4 (ENSMSIG00000021760) ##9	Trim17 (ENSMSIG00000021747)	Trim11 (ENSMSIG00000021692) #8	ENSMSIG00000021680	Obscn (ENSMSIG00000021262) #13	ENSMSIG00000021247	Iba57 (ENSMSIG00000021231) #18	Gjc2 (ENSMSIG00000021219) #19	Guk1 (ENSMSIG00000021189) #20	Mrpl55 (ENSMSIG00000021173) #21	2310033P09Rik (ENSMSIG00000021149) #22	ENSMSIG00000021128 #23	Wnt3a (ENSMSIG00000021119) #24	Wnt9a (ENSMSIG00000021113) #25	Prss38 (ENSMSIG00000021101) #26	Snap47 (ENSMSIG00000021067) #27	Jmjd4 (ENSMSIG00000021041) #28	Zfp867 (ENSMSIG00000021023)	ENSMSIG00000021018	Zkscan17 (ENSMSIG00000020997)	ENSMSIG00000020992	ENSMSIG00000020981	Nlrp3 (ENSMSIG00000020937)	Or2b11 (ENSMSIG00000020930)	Or2aa1 (ENSMSIG00000020924)	Mprip (ENSMSIG00000020270)
Mouse	MODERN SPECIES	2	2810021J22Rik (ENSMUSG00000020491)	Zfp39 (ENSMUSG00000037001)	Btnl10 (ENSMUSG00000020490)	Rnf187 (ENSMUSG00000020496)	H2bc27 (ENSMUSG00000056895) ##11	H2bc26-ps (ENSMUSG00000080712) #11	H2ac25 (ENSMUSG00000078851) #10	Trim17 (ENSMUSG00000036964)	H3f4 (ENSMUSG00000080152) ##9	Trim11 (ENSMUSG00000020455) #8	Obscn (ENSMUSG00000061462) #13	Iba57 (ENSMUSG00000049287) #18	Gjc2 (ENSMUSG00000043448) #19	Guk1 (ENSMUSG00000020444) #20	Mrpl55 (ENSMUSG00000036860) #21	2310033P09Rik (ENSMUSG00000020441) #22	Arf1 (ENSMUSG00000048076) #23	Wnt3a (ENSMUSG00000009900) #24	Wnt9a (ENSMUSG00000000126) #25	Prss38 (ENSMUSG00000049291) #26	Snap47 (ENSMUSG00000009894) #27	Jmjd4 (ENSMUSG00000036819) #28	Zfp867 (ENSMUSG00000054519)	Zkscan17 (ENSMUSG00000020472)	Nlrp3 (ENSMUSG00000032691)	Or2b11 (ENSMUSG00000059610)	Or2aa1 (ENSMUSG00000048919)	Or2w25 (ENSMUSG00000044061)	Mprip (ENSMUSG00000005417)	Pld6 (ENSMUSG00000043648)	Flcn (ENSMUSG00000032633)
Ryukyu mouse	MODERN SPECIES	2	Fam183b (MGP_CAROLIEiJ_G0016414)	Gm12258 (MGP_CAROLIEiJ_G0016415)	2810021J22Rik (MGP_CAROLIEiJ_G0016416)	Zfp39 (MGP_CAROLIEiJ_G0016417)	Btnl10 (MGP_CAROLIEiJ_G0016418)	MGP_CAROLIEiJ_G0016419	H2bc27 (MGP_CAROLIEiJ_G0016420) ##11	H2ac25 (MGP_CAROLIEiJ_G0016422) #10	Trim17 (MGP_CAROLIEiJ_G0016421)	Trim11 (MGP_CAROLIEiJ_G0016423) #8	MGP_CAROLIEiJ_G0016424 #13	Iba57 (MGP_CAROLIEiJ_G0016425) #18	Gjc2 (MGP_CAROLIEiJ_G0016426) #19	Guk1 (MGP_CAROLIEiJ_G0016427) #20	Mrpl55 (MGP_CAROLIEiJ_G0016428) #21	2310033P09Rik (MGP_CAROLIEiJ_G0016429) #22	MGP_CAROLIEiJ_G0016430 #23	MGP_CAROLIEiJ_G0016431 #23	Wnt3a (MGP_CAROLIEiJ_G0016432) #24	Wnt9a (MGP_CAROLIEiJ_G0016433) #25	Prss38 (MGP_CAROLIEiJ_G0016434) #26	MGP_CAROLIEiJ_G0016435 #27	Jmjd4 (MGP_CAROLIEiJ_G0016436) #28	Zfp867 (MGP_CAROLIEiJ_G0016437)	Zkscan17 (MGP_CAROLIEiJ_G0016438)	Nlrp3 (MGP_CAROLIEiJ_G0016439)	Or2b11 (MGP_CAROLIEiJ_G0016440)	Or2aa1 (MGP_CAROLIEiJ_G0016441)	Or2w25 (MGP_CAROLIEiJ_G0008942)	Mprip (MGP_CAROLIEiJ_G0016442)	Pld6 (MGP_CAROLIEiJ_G0016443)
Shrew mouse	MODERN SPECIES	5	Fam183b (MGP_PahariEiJ_G0017545)	Gm12258 (MGP_PahariEiJ_G0017546)	2810021J22Rik (MGP_PahariEiJ_G0017547)	Zfp39 (MGP_PahariEiJ_G0017548)	Btnl10 (MGP_PahariEiJ_G0017549)	MGP_PahariEiJ_G0017550	H2bc27 (MGP_PahariEiJ_G0017551) ##11	H2ac25 (MGP_PahariEiJ_G0017552) #10	Trim17 (MGP_PahariEiJ_G0017553)	Trim11 (MGP_PahariEiJ_G0017554) #8	Obscn (MGP_PahariEiJ_G0017555) #13	Iba57 (MGP_PahariEiJ_G0017556) #18	Gjc2 (MGP_PahariEiJ_G0017557) #19	Guk1 (MGP_PahariEiJ_G0017558) #20	Mrpl55 (MGP_PahariEiJ_G0017559) #21	2310033P09Rik (MGP_PahariEiJ_G0017560) #22	Arf1 (MGP_PahariEiJ_G0017561) #23	Wnt3a (MGP_PahariEiJ_G0017562) #24	Wnt9a (MGP_PahariEiJ_G0017563) #25	Prss38 (MGP_PahariEiJ_G0017564) #26	MGP_PahariEiJ_G0017565 #27	Jmjd4 (MGP_PahariEiJ_G0017566) #28	Zfp867 (MGP_PahariEiJ_G0017567)	Zkscan17 (MGP_PahariEiJ_G0017568)	MGP_PahariEiJ_G0017569	Or2b11 (MGP_PahariEiJ_G0017570)	Or2aa1 (MGP_PahariEiJ_G0017571)	Or2w25 (MGP_PahariEiJ_G0008415)	Mprip (MGP_PahariEiJ_G0017572)	Pld6 (MGP_PahariEiJ_G0017573)	Flcn (MGP_PahariEiJ_G0017574)
Rat	MODERN SPECIES	1	RGD1561277 (ENSRNOG00000051868)	LOC102555635 (ENSRNOG00000023431)	Zfp39 (ENSRNOG00000014712)	Btnl10 (ENSRNOG00000043019)	Rnf187 (ENSRNOG00000049219)	Hist3h2ba (ENSRNOG00000043419) ##11	H2bu1 (ENSRNOG00000066919) #11	H2ac25 (ENSRNOG00000064520) #10	H2ac25 (ENSRNOG00000022983)	Trim11 (ENSRNOG00000002915) #8	Obscn (ENSRNOG00000058068) #13	Iba57 (ENSRNOG00000068756) #18	Gjc2 (ENSRNOG00000038328) #19	Guk1 (ENSRNOG00000002928) #20	Mrpl55 (ENSRNOG00000002943) #21	C10h1orf35 (ENSRNOG00000002944) #22	Arf1 (ENSRNOG00000060229) #23	Wnt3a (ENSRNOG00000003039) #24	Wnt9a (ENSRNOG00000003066) #25	Prss38 (ENSRNOG00000022548) #26	Snap47 (ENSRNOG00000022472) #27	Jmjd4 (ENSRNOG00000022438) #28	Zfp867 (ENSRNOG00000022431)	Ftl1 (ENSRNOG00000020843)	Zfp496 (ENSRNOG00000003129)	Nlrp3 (ENSRNOG00000003170)	Or2b11 (ENSRNOG00000022244)	Or2aa1 (ENSRNOG00000003210)	Mprip (ENSRNOG00000003226)	Pld6 (ENSRNOG00000021657)	Flcn (ENSRNOG00000003302)
Upper Galilee mountains blind mole rat	MODERN SPECIES	361															Mrpl55 (ENSNGAG00000023889) #21	2310033P09Rik (ENSNGAG00000016568) #22	Arf1 (ENSNGAG00000015070) #23	Wnt3a (ENSNGAG00000018479) #24	Wnt9a (ENSNGAG00000010691) #25	Prss38 (ENSNGAG00000012956) #26	Snap47 (ENSNGAG00000021482) #27	Jmjd4 (ENSNGAG00000023540) #28	Zfp867 (ENSNGAG00000020914)	Zkscan17 (ENSNGAG00000021846)	Nlrp3 (ENSNGAG00000013972)	Or2b11 (ENSNGAG00000011866)	ENSNGAG00000023903
Lesser Egyptian jerboa	MODERN SPECIES	63	Fam183b (ENSJJAG00000018849)	ENSJJAG00000000550	Zfp39 (ENSJJAG00000018925)	Btnl10 (ENSJJAG00000023413)	ENSJJAG00000011864 #12	H2bc26-ps (ENSJJAG00000003959) #11	H2ac25 (ENSJJAG00000004184) #10	ENSJJAG00000017460 ##9	Trim17 (ENSJJAG00000017850)	Trim11 (ENSJJAG00000019654) #8	Obscn (ENSJJAG00000023196) #13	Iba57 (ENSJJAG00000023432) #18	Gjc2 (ENSJJAG00000011405) #19	Guk1 (ENSJJAG00000021658) #20	Mrpl55 (ENSJJAG00000021164) #21	2310033P09Rik (ENSJJAG00000001888) #22	ENSJJAG00000020245 #23	Wnt3a (ENSJJAG00000020598) #24	Wnt9a (ENSJJAG00000020971) #25	Prss38 (ENSJJAG00000022512) #26	Snap47 (ENSJJAG00000023009) #27	Jmjd4 (ENSJJAG00000012776) #28	Zfp867 (ENSJJAG00000008459)	Zkscan17 (ENSJJAG00000022828)	Nlrp3 (ENSJJAG00000007323)	Or2b11 (ENSJJAG00000004515)	Or2aa1 (ENSJJAG00000021579)	ENSJJAG00000020201	ENSJJAG00000019586	ENSJJAG00000004303	ENSJJAG00000005004
Rodentia_A	ANCESTRAL SPECIES	31			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b
Hystricomorpha	ANCESTRAL SPECIES	63			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a.c	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01060000248581.C.a.b.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	79				ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01060000248581.C.a.b.a.a	ENSGT01090000260018.C.b.a.a.x
Hystricomorpha_b	ANCESTRAL SPECIES	106				ENSGT00940000160177	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01060000248581.C.a.b.a.a
Long-tailed chinchilla	MODERN SPECIES	288					ENSCLAG00000001377	ENSCLAG00000001526	RNF187 (ENSCLAG00000001629) #12	ENSCLAG00000017452 ##11	H2BC26 (ENSCLAG00000017444) #11	TRIM17 (ENSCLAG00000000538)	TRIM11 (ENSCLAG00000000197) #8	ENSCLAG00000000505 #13	IBA57 (ENSCLAG00000000741) #18	GUK1 (ENSCLAG00000000853) #20	MRPL55 (ENSCLAG00000000917) #21	C1orf35 (ENSCLAG00000001077) #22	ARF1 (ENSCLAG00000000520) #23	WNT3A (ENSCLAG00000000529) #24	WNT9A (ENSCLAG00000000535) #25	SNAP47 (ENSCLAG00000000744) #27	JMJD4 (ENSCLAG00000000501) #28	ZNF496 (ENSCLAG00000000579)	NLRP3 (ENSCLAG00000000708)	OR2B11 (ENSCLAG00000017578)	ENSCLAG00000000375	OR2G3 (ENSCLAG00000017414)	OR9H1P (ENSCLAG00000017416)	ENSCLAG00000000640	ENSCLAG00000000675
Degu	MODERN SPECIES	351						ENSODEG00000000805	ENSODEG00000000778	RNF187 (ENSODEG00000000732) #12	ENSODEG00000018714 ##11	TRIM17 (ENSODEG00000001638)	TRIM11 (ENSODEG00000001136) #8	IBA57 (ENSODEG00000001118) #18	GJC2 (ENSODEG00000018947) #19	GUK1 (ENSODEG00000001088) #20	MRPL55 (ENSODEG00000001067) #21	C1orf35 (ENSODEG00000000976) #22	ENSODEG00000000958 #23	WNT3A (ENSODEG00000000874) #24	WNT9A (ENSODEG00000001287) #25	ENSODEG00000001243 #27	JMJD4 (ENSODEG00000001154) #28	ZNF496 (ENSODEG00000001108)	ENSODEG00000001075	NLRP3 (ENSODEG00000001033)	OR2B11 (ENSODEG00000018706)	OR2C3 (ENSODEG00000018646)	ENSODEG00000001954	OR2G3 (ENSODEG00000018774)	ENSODEG00000001509
Guinea pig	MODERN SPECIES	6	KDM3B (ENSCPOG00000002353)	FAM53C (ENSCPOG00000030846)	GFRA3 (ENSCPOG00000006594)	CDC23 (ENSCPOG00000010715)	ENSCPOG00000036704	RNF187 (ENSCPOG00000007405) #12	ENSCPOG00000021756 ##11	ENSCPOG00000040098	H3-4 (ENSCPOG00000034653) ##9	TRIM17 (ENSCPOG00000004213)	TRIM11 (ENSCPOG00000037756) #8	IBA57 (ENSCPOG00000035382) #18	GJC2 (ENSCPOG00000015099) #19	GUK1 (ENSCPOG00000037747) #20	MRPL55 (ENSCPOG00000014241) #21	C1orf35 (ENSCPOG00000000984) #22	ARF1 (ENSCPOG00000039117) #23	WNT3A (ENSCPOG00000030339) #24	WNT9A (ENSCPOG00000040771) #25	PRSS38 (ENSCPOG00000022885) #26	SNAP47 (ENSCPOG00000008518) #27	JMJD4 (ENSCPOG00000014538) #28
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000033964	ENSHGLG00000049243	ENSHGLG00000038457	ENSHGLG00000000597 #12	ENSHGLG00000035981 ##11	H2BC26 (ENSHGLG00000044541) #11	H2AC25 (ENSHGLG00000037975) #10	H3-4 (ENSHGLG00000020558) ##9	TRIM17 (ENSHGLG00000006970)	TRIM11 (ENSHGLG00000002253) #8	OBSCN (ENSHGLG00000047806) #13	IBA57 (ENSHGLG00000002132) #18	GJC2 (ENSHGLG00000033969) #19	GUK1 (ENSHGLG00000000309) #20	MRPL55 (ENSHGLG00000048301) #21	ENSHGLG00000001640 #22	ARF1 (ENSHGLG00000038119) #23	WNT3A (ENSHGLG00000001502) #24	WNT9A (ENSHGLG00000038418) #25	PRSS38 (ENSHGLG00000043627) #26	ENSHGLG00000001357 #27	JMJD4 (ENSHGLG00000001365) #28	ENSHGLG00000047340	ENSHGLG00000001102	ENSHGLG00000043542	ENSHGLG00000000671	ENSHGLG00000000615	ENSHGLG00000041322	ENSHGLG00000045465	ENSHGLG00000035253	ENSHGLG00000019776
Sciuridae	ANCESTRAL SPECIES	55			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.a.b	ENSGT01060000248581.C.a.a
Marmotini	ANCESTRAL SPECIES	100			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.a
Marmotini_b	ANCESTRAL SPECIES	218												ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b
Squirrel	MODERN SPECIES	463													IBA57 (ENSSTOG00000020525) #18	GJC2 (ENSSTOG00000009501) #19	GUK1 (ENSSTOG00000026156) #20	C1orf35 (ENSSTOG00000009295) #22	ENSSTOG00000009288 #23	WNT3A (ENSSTOG00000027360) #24	WNT9A (ENSSTOG00000008351) #25	PRSS38 (ENSSTOG00000027275) #26	SNAP47 (ENSSTOG00000028391) #27	JMJD4 (ENSSTOG00000006186) #28	ZNF496 (ENSSTOG00000027824)	NLRP3 (ENSSTOG00000010228)	OR2C3 (ENSSTOG00000008172)	ENSSTOG00000027492
Arctic ground squirrel	MODERN SPECIES	712													IBA57 (ENSUPAG00010009641) #18	GUK1 (ENSUPAG00010009613) #20	MRPL55 (ENSUPAG00010009599) #21	C1orf35 (ENSUPAG00010009587) #22	ENSUPAG00010009582	WNT3A (ENSUPAG00010009580) #24	WNT9A (ENSUPAG00010009568) #25	PRSS38 (ENSUPAG00010009560) #26	SNAP47 (ENSUPAG00010009551) #27	JMJD4 (ENSUPAG00010009540) #28	ENSUPAG00010009536	ENSUPAG00010009533	ENSUPAG00010009530	ENSUPAG00010009519	ZNF496 (ENSUPAG00010009506)
Eurasian red squirrel	MODERN SPECIES	15	ENSSVLG00005003828	RNF187 (ENSSVLG00005003848) #12	ENSSVLG00005003856 ##11	H2BC26 (ENSSVLG00005003865) #11	H2AC25 (ENSSVLG00005003875) #10	H3-4 (ENSSVLG00005003884) ##9	TRIM17 (ENSSVLG00005003894)	TRIM11 (ENSSVLG00005003920) #8	OBSCN (ENSSVLG00005004022) #13	IBA57 (ENSSVLG00005004163) #18	GJC2 (ENSSVLG00005004174) #19	ENSSVLG00005004192	GUK1 (ENSSVLG00005004220) #20	ENSSVLG00005004242	MRPL55 (ENSSVLG00005004258) #21	C1orf35 (ENSSVLG00005004286) #22	ENSSVLG00005004310 #23	WNT3A (ENSSVLG00005004327) #24	WNT9A (ENSSVLG00005004346) #25	PRSS38 (ENSSVLG00005004365) #26	SNAP47 (ENSSVLG00005004391) #27	JMJD4 (ENSSVLG00005004411) #28	NLRP3 (ENSSVLG00005004506)	OR2C3 (ENSSVLG00005004659)	GCSAML (ENSSVLG00005004676)	ENSSVLG00005004709	OR2G3 (ENSSVLG00005004718)	OR14L1P (ENSSVLG00005004728)	ENSSVLG00005004740	ENSSVLG00005004759	ENSSVLG00005004766
Lagomorpha	ANCESTRAL SPECIES	245								ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24
Rabbit	MODERN SPECIES	836												ENSOCUG00000024934 #18	ENSOCUG00000024517 ##19	ENSOCUG00000027935 #20	MRPL55 (ENSOCUG00000015380) #21	C1orf35 (ENSOCUG00000025634) #22	ENSOCUG00000023645 #23	WNT3A (ENSOCUG00000004048) #24
Pika	MODERN SPECIES	1850															ENSOPRG00000015086 #21	ENSOPRG00000015072 #22	ENSOPRG00000015063 #23
Primates	ANCESTRAL SPECIES	30			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01100000263548.b.a.a.a.a.a	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01090000260044.A.b.a.a.a.a.a	ENSGT01100000263486.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A
Haplorrhini	ANCESTRAL SPECIES	46		ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT00940000162666	ENSGT01090000260086.E.b
Simiiformes	ANCESTRAL SPECIES	33		ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00910000148176	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.b	ENSGT01050000244828.c.b.b.a.b
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00910000148176	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058	ENSGT00390000003188
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00910000147389	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000157177.i.b
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000157177.i.b	ENSGT00940000156058
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000156644	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00910000147389	ENSGT00940000159380 #28	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000157177.i.b
Gorilla	MODERN SPECIES		ENSGGOG00000011409	ENSGGOG00000026023 #12	ENSGGOG00000037971 ##11	H2BC26 (ENSGGOG00000039267) #11	H2AC25 (ENSGGOG00000037094) #10	ENSGGOG00000027960 ##9	TRIM17 (ENSGGOG00000016899)	TRIM11 (ENSGGOG00000016890) #8	ENSGGOG00000012717 #13	ENSGGOG00000012820	IBA57 (ENSGGOG00000013646) #18	ENSGGOG00000027354 #19	ENSGGOG00000013567 #20	ENSGGOG00000039931	ENSGGOG00000015709 #21	C1orf35 (ENSGGOG00000015702) #22	ARF1 (ENSGGOG00000011263) #23	ENSGGOG00000023449	WNT3A (ENSGGOG00000006562) #24	ENSGGOG00000037788	WNT9A (ENSGGOG00000004569) #25	PRSS38 (ENSGGOG00000012849) #26	SNAP47 (ENSGGOG00000008442) #27	ENSGGOG00000037683	JMJD4 (ENSGGOG00000008441) #28	ENSGGOG00000041432	ZNF678 (ENSGGOG00000042328)	CDC42BPA (ENSGGOG00000009605)	COQ8A (ENSGGOG00000009596)	PSEN2 (ENSGGOG00000003332)	ENSGGOG00000015112
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000156644	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00910000147389	ENSGT00940000159380 #28	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000157177.i.b
Human	MODERN SPECIES		ACTA1 (ENSG00000143632)	CCSAP (ENSG00000154429)	RAB4A (ENSG00000168118)	RHOU (ENSG00000116574)	RNF187 (ENSG00000168159) #12	H2BC26 (ENSG00000196890) #11	H2AC25 (ENSG00000181218) #10	H3-4 (ENSG00000168148) ##9	TRIM17 (ENSG00000162931)	TRIM11 (ENSG00000154370) #8	OBSCN (ENSG00000154358) #13	IBA57 (ENSG00000181873) #18	GJC2 (ENSG00000198835) #19	GUK1 (ENSG00000143774) #20	MRPL55 (ENSG00000162910) #21	C1orf35 (ENSG00000143793) #22	ARF1 (ENSG00000143761) #23	WNT3A (ENSG00000154342) #24	WNT9A (ENSG00000143816) #25	PRSS38 (ENSG00000185888) #26	JMJD4 (ENSG00000081692) #28	SNAP47 (ENSG00000143740) #27	ZNF678 (ENSG00000181450)	CDC42BPA (ENSG00000143776)	COQ8A (ENSG00000163050)	PSEN2 (ENSG00000143801)	ITPKB (ENSG00000143772)	STUM (ENSG00000203685)	PARP1 (ENSG00000143799)	LIN9 (ENSG00000183814)	MIXL1 (ENSG00000185155)
Pan	ANCESTRAL SPECIES		ENSGT00940000156644	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00910000147389	ENSGT00940000159380 #28	ENSGT00940000154251.A.a.a.a	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000157177.i.b
Chimpanzee	MODERN SPECIES		RNF187 (ENSPTRG00000002079) #12	H2BC27 (ENSPTRG00000049906) ##11	ENSPTRG00000048372	H2BC26 (ENSPTRG00000050958) #11	H2AC25 (ENSPTRG00000047640) #10	H3-4 (ENSPTRG00000052362) ##9	TRIM17 (ENSPTRG00000002076)	TRIM11 (ENSPTRG00000002071) #8	OBSCN (ENSPTRG00000046375) #13	ENSPTRG00000002073	IBA57 (ENSPTRG00000002072) #18	GJC2 (ENSPTRG00000002070) #19	GUK1 (ENSPTRG00000002069) #20	ENSPTRG00000051540	MRPL55 (ENSPTRG00000002068) #21	C1H1orf35 (ENSPTRG00000002067) #22	ARF1 (ENSPTRG00000002066) #23	ENSPTRG00000046943	WNT3A (ENSPTRG00000002064) #24	WNT9A (ENSPTRG00000002062) #25	PRSS38 (ENSPTRG00000002061) #26	SNAP47 (ENSPTRG00000002060) #27	ENSPTRG00000048948	JMJD4 (ENSPTRG00000002059) #28	ZNF678 (ENSPTRG00000002057)	CDC42BPA (ENSPTRG00000042934)	COQ8A (ENSPTRG00000033741)	PSEN2 (ENSPTRG00000002052)	ITPKB (ENSPTRG00000002051)	STUM (ENSPTRG00000030135)	ENSPTRG00000043266
Bonobo	MODERN SPECIES		ACTA1 (ENSPPAG00000033916)	RAB4A (ENSPPAG00000036595)	ENSPPAG00000034335	ENSPPAG00000001893 ##11	H2BC26 (ENSPPAG00000025721) #11	H2AC25 (ENSPPAG00000013459) #10	H3-4 (ENSPPAG00000020018) ##9	TRIM17 (ENSPPAG00000018691)	TRIM11 (ENSPPAG00000018913) #8	OBSCN (ENSPPAG00000039604) #13	ENSPPAG00000037707	ENSPPAG00000034125 #18	ENSPPAG00000031110 #20	ENSPPAG00000030143	ENSPPAG00000030545 #21	ENSPPAG00000031412 #22	ARF1 (ENSPPAG00000029612) #23	ENSPPAG00000003062	WNT3A (ENSPPAG00000033514) #24	WNT9A (ENSPPAG00000040433) #25	PRSS38 (ENSPPAG00000029608) #26	SNAP47 (ENSPPAG00000030087) #27	ENSPPAG00000043934	JMJD4 (ENSPPAG00000041921) #28	ENSPPAG00000042694	ENSPPAG00000042857	CDC42BPA (ENSPPAG00000030700)	COQ8A (ENSPPAG00000038783)	PSEN2 (ENSPPAG00000029453)	ITPKB (ENSPPAG00000034181)	ENSPPAG00000026314
Orangutan	MODERN SPECIES		RHOU (ENSPPYG00000000130)	ENSPPYG00000000131	ENSPPYG00000000133	RNF187 (ENSPPYG00000041257) #12	ENSPPYG00000040985 ##11	H2BC26 (ENSPPYG00000039326) #11	H2AC25 (ENSPPYG00000030037) #10	H3-4 (ENSPPYG00000000136) ##9	TRIM17 (ENSPPYG00000000137)	ENSPPYG00000000138 #8	ENSPPYG00000000139 #13	IBA57 (ENSPPYG00000039751) #18	GJC2 (ENSPPYG00000000144) #19	ENSPPYG00000000145 #20	ENSPPYG00000000146 #21	C1orf35 (ENSPPYG00000000147) #22	ARF1 (ENSPPYG00000000148) #23	ENSPPYG00000000149	WNT3A (ENSPPYG00000000150) #24	WNT9A (ENSPPYG00000000151) #25	PRSS38 (ENSPPYG00000000152) #26	SNAP47 (ENSPPYG00000000153) #27	JMJD4 (ENSPPYG00000000154) #28	ENSPPYG00000000155	CDC42BPA (ENSPPYG00000000158)	COQ8A (ENSPPYG00000000159)	PSEN2 (ENSPPYG00000000160)	ITPKB (ENSPPYG00000000161)	STUM (ENSPPYG00000000162)	PARP1 (ENSPPYG00000000164)	ENSPPYG00000000165
Gibbon	MODERN SPECIES	20	ENSNLEG00000032941	RAB4A (ENSNLEG00000014339)	ENSNLEG00000027599	RHOU (ENSNLEG00000027920)	ENSNLEG00000029943 ##11	H2BC26 (ENSNLEG00000033656) #11	H2AC25 (ENSNLEG00000033352) #10	H3-4 (ENSNLEG00000031785) ##9	TRIM17 (ENSNLEG00000014332)	TRIM11 (ENSNLEG00000014315) #8	ENSNLEG00000014265 #13	ENSNLEG00000033321	IBA57 (ENSNLEG00000014263) #18	ENSNLEG00000014235 #20	ENSNLEG00000014215 #21	ENSNLEG00000033210 #22	ARF1 (ENSNLEG00000014137) #23	ENSNLEG00000029254	WNT3A (ENSNLEG00000014118) #24	WNT9A (ENSNLEG00000014116) #25	PRSS38 (ENSNLEG00000014112) #26	SNAP47 (ENSNLEG00000014097) #27	JMJD4 (ENSNLEG00000032639) #28	ENSNLEG00000031801	ZNF678 (ENSNLEG00000008917)	CDC42BPA (ENSNLEG00000013980)	COQ8A (ENSNLEG00000013937)	PSEN2 (ENSNLEG00000013924)	ITPKB (ENSNLEG00000013915)	ENSNLEG00000013913	ENSNLEG00000032044
Cercopithecidae	ANCESTRAL SPECIES	20		ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058
Cercopithecinae	ANCESTRAL SPECIES	18		ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT01090000260030.b	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058	ENSGT00390000003188
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000013340	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A.vc #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00910000148086	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT01090000260030.b	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058
Macaca	ANCESTRAL SPECIES		ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00940000154756.A.vc #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000017697.a.n	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00910000148086	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT01090000260030.b	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000163577	ENSGT00940000157769	ENSGT00940000153464.A.b.a	ENSGT00940000154842.a.b	ENSGT00390000013340	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT01100000263514.A.f ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT01090000260030.b	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058	ENSGT00940000161627.a.b.a.a.b	ENSGT00390000003188
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000053016	UHMK1 (ENSMFAG00000041742)	UAP1 (ENSMFAG00000042529)	DDR2 (ENSMFAG00000036365)	ENSMFAG00000062302	RNF187 (ENSMFAG00000035159) #12	H2BC26 (ENSMFAG00000049429) #11	ENSMFAG00000057302	ENSMFAG00000063754 ##9	TRIM17 (ENSMFAG00000001716)	TRIM11 (ENSMFAG00000042805) #8	ENSMFAG00000008386	IBA57 (ENSMFAG00000002470) #18	GUK1 (ENSMFAG00000039838) #20	MRPL55 (ENSMFAG00000064574) #21	C1orf35 (ENSMFAG00000045378) #22	ENSMFAG00000034073 #23	WNT3A (ENSMFAG00000042689) #24	WNT9A (ENSMFAG00000062558) #25	PRSS38 (ENSMFAG00000045626) #26	SNAP47 (ENSMFAG00000001190) #27	JMJD4 (ENSMFAG00000043012) #28	ENSMFAG00000038489	CDC42BPA (ENSMFAG00000036131)	COQ8A (ENSMFAG00000045043)	PSEN2 (ENSMFAG00000000107)	ENSMFAG00000054654	ENSMFAG00000053714	ITPKB (ENSMFAG00000035876)	STUM (ENSMFAG00000035398)	PARP1 (ENSMFAG00000002526)
Pig-tailed macaque	MODERN SPECIES	288	RNF187 (ENSMNEG00000041115) #12	ENSMNEG00000023271 ##11	H2BC26 (ENSMNEG00000007106) #11	H2AC25 (ENSMNEG00000011405) #10	H3-4 (ENSMNEG00000018662) ##9	TRIM17 (ENSMNEG00000033783)	TRIM11 (ENSMNEG00000029145) #8	ENSMNEG00000022017	OBSCN (ENSMNEG00000039875) #13	ENSMNEG00000033684	IBA57 (ENSMNEG00000037320) #18	GJC2 (ENSMNEG00000000224) #19	ENSMNEG00000028444 #20	ENSMNEG00000035833	MRPL55 (ENSMNEG00000036387) #21	C1orf35 (ENSMNEG00000029724) #22	ARF1 (ENSMNEG00000037278) #23	ENSMNEG00000038219	WNT3A (ENSMNEG00000037152) #24	WNT9A (ENSMNEG00000028905) #25
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00390000013340	ENSGT00390000009510.a #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A.vc #13	ENSGT00390000016274	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00910000148086	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000153165.a.a.d.i.a	ENSGT00910000148176	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003
Olive baboon	MODERN SPECIES		DDR2 (ENSPANG00000011453)	ENSPANG00000045838	HSD17B7 (ENSPANG00000026079)	ENSPANG00000050063 ##11	H2BC26 (ENSPANG00000042066) #11	H2AC25 (ENSPANG00000039633) #10	H3-4 (ENSPANG00000032788) ##9	TRIM17 (ENSPANG00000014849)	TRIM11 (ENSPANG00000004478) #8	ENSPANG00000035184 #13	ENSPANG00000030630	IBA57 (ENSPANG00000021033) #18	GJC2 (ENSPANG00000035104) #19	ENSPANG00000020945 #20	MRPL55 (ENSPANG00000017717) #21	C1orf35 (ENSPANG00000009889) #22	ENSPANG00000004523 #23	WNT3A (ENSPANG00000019711) #24	WNT9A (ENSPANG00000048565) #25	PRSS38 (ENSPANG00000024006) #26	SNAP47 (ENSPANG00000017951) #27	JMJD4 (ENSPANG00000031507) #28	ENSPANG00000048924	ENSPANG00000048983	CDC42BPA (ENSPANG00000007777)	COQ8A (ENSPANG00000005934)	PSEN2 (ENSPANG00000015683)	ENSPANG00000040643	ITPKB (ENSPANG00000014076)	ENSPANG00000042335	ENSPANG00000041992
Cercopithecinae_d	ANCESTRAL SPECIES	160		ENSGT00390000009510.a #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A.vc #13	ENSGT00390000016274	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.`b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00910000148086	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT01090000260030.b	ENSGT00910000147389	ENSGT00940000154251.A.a.a.a
Sooty mangabey	MODERN SPECIES	269	ENSCATG00000036222 #12	ENSCATG00000016310 ##11	H2BC26 (ENSCATG00000043414) #11	H2AC25 (ENSCATG00000019930) #10	H3-4 (ENSCATG00000015110) ##9	TRIM17 (ENSCATG00000004723)	TRIM11 (ENSCATG00000037992) #8	ENSCATG00000028342 #13	ENSCATG00000018563	ENSCATG00000015518 #13	ENSCATG00000033121	IBA57 (ENSCATG00000033547) #18	GJC2 (ENSCATG00000043427) #19	ENSCATG00000030372 #20	MRPL55 (ENSCATG00000001114) #21	C1orf35 (ENSCATG00000036828) #22	ENSCATG00000034162 #23	ENSCATG00000026444	WNT3A (ENSCATG00000024249) #24	WNT9A (ENSCATG00000037437) #25	PRSS38 (ENSCATG00000028007) #26	ENSCATG00000032383	SNAP47 (ENSCATG00000017110) #27	JMJD4 (ENSCATG00000030697) #28	ENSCATG00000028870	ENSCATG00000036887
Drill	MODERN SPECIES	1468					ENSMLEG00000027649 ##11	H2BC26 (ENSMLEG00000011931) #11	H2AC25 (ENSMLEG00000019082) #10	H3-4 (ENSMLEG00000027834) ##9	TRIM17 (ENSMLEG00000036683)	TRIM11 (ENSMLEG00000035665) #8	OBSCN (ENSMLEG00000039921) #13	ENSMLEG00000000202	IBA57 (ENSMLEG00000035651) #18	ENSMLEG00000033820 #20	MRPL55 (ENSMLEG00000043407) #21	C1orf35 (ENSMLEG00000044367) #22	ARF1 (ENSMLEG00000040308) #23	ENSMLEG00000010724	WNT3A (ENSMLEG00000034108) #24	WNT9A (ENSMLEG00000041830) #25	PRSS38 (ENSMLEG00000031236) #26	SNAP47 (ENSMLEG00000028118) #27	JMJD4 (ENSMLEG00000038450) #28	ENSMLEG00000029152	ZNF678 (ENSMLEG00000030111)
Vervet Monkey	MODERN SPECIES	17				RNF187 (ENSCSAG00000016553) #12	ENSCSAG00000000273 ##11	H2BC26 (ENSCSAG00000000272) #11	H2AC25 (ENSCSAG00000000271) #10	TRIM17 (ENSCSAG00000016546)	TRIM11 (ENSCSAG00000016542) #8	OBSCN (ENSCSAG00000016528) #13	ENSCSAG00000000270	IBA57 (ENSCSAG00000016503) #18	GJC2 (ENSCSAG00000000269) #19	GUK1 (ENSCSAG00000016494) #20	MRPL55 (ENSCSAG00000016477) #21	C1orf35 (ENSCSAG00000016465) #22	ARF1 (ENSCSAG00000016460) #23	WNT3A (ENSCSAG00000016455) #24	WNT9A (ENSCSAG00000016440) #25	PRSS38 (ENSCSAG00000016434) #26	SNAP47 (ENSCSAG00000016423) #27	JMJD4 (ENSCSAG00000016420) #28	ENSCSAG00000016411	CDC42BPA (ENSCSAG00000016402)	COQ8A (ENSCSAG00000016382)	PSEN2 (ENSCSAG00000016372)	ITPKB (ENSCSAG00000016366)	STUM (ENSCSAG00000016358)	PARP1 (ENSCSAG00000016354)	LIN9 (ENSCSAG00000016351)	MIXL1 (ENSCSAG00000016345)
Rhinopithecus	ANCESTRAL SPECIES	247			ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00860000136121	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00910000147389	ENSGT00390000012563.m.b.b
Golden snub-nosed monkey	MODERN SPECIES	1884												IBA57 (ENSRROG00000033786) #18	GJC2 (ENSRROG00000044410) #19	ENSRROG00000031989 #20	MRPL55 (ENSRROG00000033833) #21	C1orf35 (ENSRROG00000039110) #22	ARF1 (ENSRROG00000040407) #23	ENSRROG00000034216	WNT3A (ENSRROG00000037718) #24	WNT9A (ENSRROG00000031230) #25	PRSS38 (ENSRROG00000032353) #26	SNAP47 (ENSRROG00000004862) #27	JMJD4 (ENSRROG00000039305) #28	ENSRROG00000036976	ENSRROG00000013119
Black snub-nosed monkey	MODERN SPECIES	736				ENSRBIG00000029298 ##11	H2BC26 (ENSRBIG00000013451) #11	H2AC25 (ENSRBIG00000024183) #10	H3-4 (ENSRBIG00000029468) ##9	TRIM17 (ENSRBIG00000017974)	TRIM11 (ENSRBIG00000027735) #8	OBSCN (ENSRBIG00000044496) #13	ENSRBIG00000031054	IBA57 (ENSRBIG00000042111) #18	GJC2 (ENSRBIG00000039202) #19	ENSRBIG00000030901 #20	MRPL55 (ENSRBIG00000038180) #21	C1orf35 (ENSRBIG00000032408) #22	ARF1 (ENSRBIG00000043809) #23	ENSRBIG00000040413	WNT3A (ENSRBIG00000039877) #24	WNT9A (ENSRBIG00000036258) #25
Platyrrhini	ANCESTRAL SPECIES	55			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.bb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00910000148176	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT00940000162246	ENSGT01090000259995.b.b.a.a.a	ENSGT00730000111648
Cebidae	ANCESTRAL SPECIES	23	ENSGT00390000018900	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.bb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT00940000162246	ENSGT01090000259995.b.b.a.a.a	ENSGT00730000111648	ENSGT00570000079564
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00390000018900	ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263504.a.b.b.b.b	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000016274	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.bb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161967	ENSGT00940000162415	ENSGT01090000260044.A.b.a.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.b	ENSGT00940000158134.A	ENSGT00940000162246	ENSGT01090000260018.C.b.a.a	ENSGT00570000079564	ENSGT00390000018500.a
Bolivian squirrel monkey	MODERN SPECIES	114	SMYD3 (ENSSBOG00000026164)	ENSSBOG00000035160	TFB2M (ENSSBOG00000033950)	CNST (ENSSBOG00000028424)	SCCPDH (ENSSBOG00000021995)	AHCTF1 (ENSSBOG00000004404)	ENSSBOG00000019925 ##11	H2BC26 (ENSSBOG00000008375) #11	H2AC25 (ENSSBOG00000019953) #10	TRIM17 (ENSSBOG00000030344)	TRIM11 (ENSSBOG00000005125) #8	OBSCN (ENSSBOG00000032380) #13	IBA57 (ENSSBOG00000022497) #18	GUK1 (ENSSBOG00000026897) #20	MRPL55 (ENSSBOG00000035388) #21	C1orf35 (ENSSBOG00000023673) #22	ENSSBOG00000030557 #23	WNT3A (ENSSBOG00000020846) #24	WNT9A (ENSSBOG00000025218) #25	PRSS38 (ENSSBOG00000025229) #26	ENSSBOG00000025438 #27	JMJD4 (ENSSBOG00000026344) #28	ENSSBOG00000021324	ZNF496 (ENSSBOG00000005783)	NLRP3 (ENSSBOG00000030084)	OR2B11 (ENSSBOG00000031196)	OR2C3 (ENSSBOG00000028292)	GCSAML (ENSSBOG00000033373)	TRIM58 (ENSSBOG00000024282)	ENSSBOG00000026393	LYPD8 (ENSSBOG00000032248)
Capuchin	MODERN SPECIES	75	ENSCCAG00000025344	RNF187 (ENSCCAG00000028705) #12	ENSCCAG00000012567 ##11	H2BU1 (ENSCCAG00000015023) #11	H2AW (ENSCCAG00000012315) #10	ENSCCAG00000036407	TRIM17 (ENSCCAG00000025121)	TRIM11 (ENSCCAG00000036943) #8	ENSCCAG00000016195	OBSCN (ENSCCAG00000032571) #13	ENSCCAG00000023630	IBA57 (ENSCCAG00000019844) #18	GJC2 (ENSCCAG00000020287) #19	GUK1 (ENSCCAG00000035707) #20	MRPL55 (ENSCCAG00000031724) #21	C1orf35 (ENSCCAG00000020266) #22	ENSCCAG00000023374 #23	WNT3A (ENSCCAG00000009359) #24	WNT9A (ENSCCAG00000030978) #25	PRSS38 (ENSCCAG00000020907) #26	SNAP47 (ENSCCAG00000027134) #27	JMJD4 (ENSCCAG00000035807) #28	ENSCCAG00000021671	ENSCCAG00000031402	ZNF670 (ENSCCAG00000027449)	ZNF124 (ENSCCAG00000026559)
Marmoset	MODERN SPECIES	10	SCCPDH (ENSCJAG00000016806)	AHCTF1 (ENSCJAG00000016790)	ENSCJAG00000082135	ENSCJAG00000059253	RNF187 (ENSCJAG00000016779) #12	ENSCJAG00000071519 ##11	H2BC26 (ENSCJAG00000077602) #11	H2AC25 (ENSCJAG00000083637) #10	TRIM17 (ENSCJAG00000016765)	TRIM11 (ENSCJAG00000016757) #8	OBSCN (ENSCJAG00000054288) #13	IBA57 (ENSCJAG00000016749) #18	GJC2 (ENSCJAG00000016746) #19	ENSCJAG00000016738 #20	MRPL55 (ENSCJAG00000016730) #21	C1orf35 (ENSCJAG00000016721) #22	ARF1 (ENSCJAG00000041786) #23	WNT3A (ENSCJAG00000016650) #24	WNT9A (ENSCJAG00000080517) #25	SNAP47 (ENSCJAG00000039821) #27	JMJD4 (ENSCJAG00000011727) #28	ZNF669 (ENSCJAG00000048657)	ZNF670 (ENSCJAG00000011738)	ZNF124 (ENSCJAG00000011765)	ENSCJAG00000082577	ENSCJAG00000066453	ZNF496 (ENSCJAG00000011781)	NLRP3 (ENSCJAG00000011813)	OR2B11 (ENSCJAG00000075428)	GCSAML (ENSCJAG00000043513)	OR13G1 (ENSCJAG00000022631)
Mas night monkey	MODERN SPECIES	1116				ENSANAG00000026087	ENSANAG00000031738 ##11	H2BC26 (ENSANAG00000010772) #11	H2AC25 (ENSANAG00000031714) #10	ENSANAG00000022375	ENSANAG00000028749	TRIM11 (ENSANAG00000034240) #8	OBSCN (ENSANAG00000024031) #13	ENSANAG00000029250	IBA57 (ENSANAG00000022164) #18	GUK1 (ENSANAG00000027172) #20	MRPL55 (ENSANAG00000036592) #21	C1orf35 (ENSANAG00000020714) #22	ENSANAG00000036021 #23	WNT3A (ENSANAG00000021377) #24	WNT9A (ENSANAG00000032624) #25	SNAP47 (ENSANAG00000035151) #27	JMJD4 (ENSANAG00000028105) #28	ENSANAG00000022916	ZNF669 (ENSANAG00000013317)	ZNF670 (ENSANAG00000033492)	ZNF124 (ENSANAG00000029658)	ZNF496 (ENSANAG00000022228)	NLRP3 (ENSANAG00000030863)	OR2C3 (ENSANAG00000035800)	GCSAML (ENSANAG00000030297)	OR1C1 (ENSANAG00000026494)	TRIM58 (ENSANAG00000028275)
Tarsier	MODERN SPECIES	5065					ENSTSYG00000036415 ##11	H2BC26 (ENSTSYG00000029005) #11	H2AC25 (ENSTSYG00000026130) #10	H3-4 (ENSTSYG00000037257) ##9	TRIM17 (ENSTSYG00000008473)	TRIM11 (ENSTSYG00000029832) #8	OBSCN (ENSTSYG00000031392) #13	ENSTSYG00000006833	IBA57 (ENSTSYG00000014591) #18	GUK1 (ENSTSYG00000001325) #20	MRPL55 (ENSTSYG00000002932) #21	CUNH1orf35 (ENSTSYG00000031003) #22	ARF1 (ENSTSYG00000027538) #23	WNT3A (ENSTSYG00000027346) #24	WNT9A (ENSTSYG00000025543) #25	PRSS38 (ENSTSYG00000011299) #26	SNAP47 (ENSTSYG00000034505) #27	JMJD4 (ENSTSYG00000000484) #28	ENSTSYG00000028507	ENSTSYG00000002726	ENSTSYG00000034800	ZNF669 (ENSTSYG00000003204)	ENSTSYG00000010242
Strepsirrhini	ANCESTRAL SPECIES	52			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000153165.a.a.d.j	ENSGT01100000263507.D.a.a.b.b.b.b.b	ENSGT00940000164205
Lemuriformes	ANCESTRAL SPECIES	18			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000159259.b	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000160555	ENSGT00730000111087	ENSGT00940000157358	ENSGT00940000162379	ENSGT00940000157028	ENSGT01050000244864.B.b
Lemuriformes_a	ANCESTRAL SPECIES	88			ENSGT00940000163997	ENSGT00390000009510 #12	ENSGT01100000263474.a.b.b.e.b.a.b ##11	ENSGT01100000263474.a.b.b.e.b.a.a #11	ENSGT00940000153092.a.a.c.b #10	ENSGT01100000263514.A.e.b ##9	ENSGT00940000162155	ENSGT00940000160371 #8	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000159259.b	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000160555	ENSGT00730000111087	ENSGT00940000157358	ENSGT00940000162379	ENSGT00940000157028	ENSGT01050000244864.B.b
Coquerels sifaka	MODERN SPECIES	234			ENSPCOG00000026534	ENSPCOG00000024361	RNF187 (ENSPCOG00000002810) #12	ENSPCOG00000005164 ##11	H2BC26 (ENSPCOG00000003934) #11	H2AC25 (ENSPCOG00000013826) #10	H3-4 (ENSPCOG00000026493) ##9	TRIM17 (ENSPCOG00000026287)	TRIM11 (ENSPCOG00000016532) #8	OBSCN (ENSPCOG00000028285) #13	IBA57 (ENSPCOG00000028589) #18	GUK1 (ENSPCOG00000009766) #20	MRPL55 (ENSPCOG00000013827) #21	C1orf35 (ENSPCOG00000025028) #22	ARF1 (ENSPCOG00000026770) #23	WNT3A (ENSPCOG00000024931) #24	WNT9A (ENSPCOG00000015468) #25	PRSS38 (ENSPCOG00000019582) #26	SNAP47 (ENSPCOG00000012484) #27	JMJD4 (ENSPCOG00000019446) #28	ENSPCOG00000024700	ATP12A (ENSPCOG00000025271)	RNF17 (ENSPCOG00000020211)	CENPJ (ENSPCOG00000016218)	PARP4 (ENSPCOG00000022852)	MPHOSPH8 (ENSPCOG00000020055)	PSPC1 (ENSPCOG00000014364)	ZMYM5 (ENSPCOG00000000658)	ZMYM2 (ENSPCOG00000021632)
Greater bamboo lemur	MODERN SPECIES	769				ENSPSMG00000013365 ##11	H2BC26 (ENSPSMG00000013352) #11	ENSPSMG00000013337 ##10	ENSPSMG00000013327	TRIM17 (ENSPSMG00000013322)	TRIM11 (ENSPSMG00000013308) #8	ENSPSMG00000013289 #13	ENSPSMG00000013283 #13	IBA57 (ENSPSMG00000013279) #18	GJC2 (ENSPSMG00000013273) #19	GUK1 (ENSPSMG00000013269) #20	MRPL55 (ENSPSMG00000013256) #21	C1orf35 (ENSPSMG00000013245) #22	ARF1 (ENSPSMG00000013226) #23	ENSPSMG00000013201 #24
Mouse lemur	MODERN SPECIES	4	ENSMICG00000026956	ENSMICG00000026371	ENSMICG00000045969	ENSMICG00000046509	ENSMICG00000038421	ENSMICG00000048090 ##11	H2BC26 (ENSMICG00000041996) #11	H2AC25 (ENSMICG00000044054) #10	H3-4 (ENSMICG00000045112) ##9	TRIM17 (ENSMICG00000013315)	TRIM11 (ENSMICG00000029090) #8	OBSCN (ENSMICG00000000557) #13	IBA57 (ENSMICG00000041871) #18	GUK1 (ENSMICG00000003322) #20	MRPL55 (ENSMICG00000031760) #21	C1orf35 (ENSMICG00000027688) #22	ARF1 (ENSMICG00000047362) #23	WNT3A (ENSMICG00000010671) #24	WNT9A (ENSMICG00000047095) #25	PRSS38 (ENSMICG00000042943) #26	SNAP47 (ENSMICG00000029011) #27	JMJD4 (ENSMICG00000036474) #28	ENSMICG00000042765	ATP12A (ENSMICG00000007697)	RNF17 (ENSMICG00000010364)	CENPJ (ENSMICG00000010400)	PARP4 (ENSMICG00000028028)	MPHOSPH8 (ENSMICG00000014677)	PSPC1 (ENSMICG00000013970)	ZMYM5 (ENSMICG00000012322)	ZMYM2 (ENSMICG00000002834)
Bushbaby	MODERN SPECIES	400			ENSOGAG00000030822	RNF187 (ENSOGAG00000011214) #12	ENSOGAG00000031086 ##11	H2BC26 (ENSOGAG00000009221) #11	H2AC25 (ENSOGAG00000009219) #10	H3-4 (ENSOGAG00000031879) ##9	TRIM17 (ENSOGAG00000009217)	TRIM11 (ENSOGAG00000009216) #8	ENSOGAG00000030331 #13	IBA57 (ENSOGAG00000009178) #18	GJC2 (ENSOGAG00000033132) #19	GUK1 (ENSOGAG00000029450) #20	MRPL55 (ENSOGAG00000010981) #21	C1orf35 (ENSOGAG00000010978) #22	ARF1 (ENSOGAG00000010974) #23	WNT3A (ENSOGAG00000013493) #24	WNT9A (ENSOGAG00000013474) #25	PRSS38 (ENSOGAG00000026355) #26	SNAP47 (ENSOGAG00000004945) #27	JMJD4 (ENSOGAG00000004942) #28	ENSOGAG00000003566	ENSOGAG00000028076
Atlantogenata	ANCESTRAL SPECIES	148										ENSGT00390000016274	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000155138.f	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Afrotheria	ANCESTRAL SPECIES	186										ENSGT00390000016274	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000155138.f	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Afrotheria_a	ANCESTRAL SPECIES	187										ENSGT00390000016274	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000155138.f	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Elephant	MODERN SPECIES	27								S100B (ENSLAFG00000014935)	PRMT2 (ENSLAFG00000009604)	ENSLAFG00000030495	ENSLAFG00000022315 #13	IBA57 (ENSLAFG00000010222) #18	GJC2 (ENSLAFG00000010220) #19	GUK1 (ENSLAFG00000026666) #20	MRPL55 (ENSLAFG00000003008) #21	C1orf35 (ENSLAFG00000003007) #22	ARF1 (ENSLAFG00000006987) #23	ENSLAFG00000031881 #24	WNT9A (ENSLAFG00000017352) #25	ENSLAFG00000031393	PRSS38 (ENSLAFG00000005934) #26	SNAP47 (ENSLAFG00000028954) #27	JMJD4 (ENSLAFG00000022162) #28	ENSLAFG00000032186	TRIM11 (ENSLAFG00000017039) #8	H3-4 (ENSLAFG00000031137) ##9	ENSLAFG00000026359 #10	ENSLAFG00000018209 #12	ENSLAFG00000027457 #10	ENSLAFG00000031204	ENSLAFG00000020656
Hyrax	MODERN SPECIES	3251															MRPL55 (ENSPCAG00000010591) #21	C1orf35 (ENSPCAG00000010504) #22	ENSPCAG00000010484
Xenarthra	ANCESTRAL SPECIES	596													ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000155138.f
Armadillo	MODERN SPECIES	2365												ENSDNOG00000035986 #13	ENSDNOG00000040893 #13	ENSDNOG00000023608 #18	MRPL55 (ENSDNOG00000024342) #21	C1orf35 (ENSDNOG00000040335) #22	ENSDNOG00000049038 #23	WNT3A (ENSDNOG00000037172) #24	WNT9A (ENSDNOG00000007791) #25	ENSDNOG00000047752	ENSDNOG00000049106	ENSDNOG00000039640
Marsupialia	ANCESTRAL SPECIES	6												ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000153341.b.r	ENSGT00940000154494.a #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00390000005082	ENSGT00940000161932.b	ENSGT00940000162829.c	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454
Marsupialia_b	ANCESTRAL SPECIES	11												ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000153341.b.r	ENSGT00940000154494.a #26	ENSGT00940000157345	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00390000005082	ENSGT00940000161932.b	ENSGT00940000162829.c	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619
Diprotodontia	ANCESTRAL SPECIES	19												ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000153341.b.r	ENSGT00940000154494.a #26	ENSGT00940000157345	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00390000005082	ENSGT00940000161932.b	ENSGT00940000162829.c	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619
Diprotodontia_a	ANCESTRAL SPECIES	21												ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000153341.b.r	ENSGT00940000154494.a #26	ENSGT00940000157345	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00390000005082	ENSGT00940000161932.b	ENSGT00940000162829.c	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619
Common wonbat	MODERN SPECIES	1091										ENSVURG00010010975 #13	ENSVURG00010010994	ENSVURG00010011004 #18	ENSVURG00010011010 #19	GUK1 (ENSVURG00010011021) #20	ENSVURG00010011028 #21	C1orf35 (ENSVURG00010011035) #22	ARF1 (ENSVURG00010011047) #23	WNT3A (ENSVURG00010011060) #24	WNT9A (ENSVURG00010011070) #25	ENSVURG00010011076	ENSVURG00010011084 #26	ENSVURG00010011097	SNAP47 (ENSVURG00010011117) #27	JMJD4 (ENSVURG00010011120) #28	ALS2CL (ENSVURG00010011135)	ENSVURG00010011184	ENSVURG00010011192	PTH1R (ENSVURG00010011202)	CCDC12 (ENSVURG00010011216)	NBEAL2 (ENSVURG00010011244)	ENSVURG00010011508
koala	MODERN SPECIES	75	ENSPCIG00000017084	ENSPCIG00000017087	ENSPCIG00000017089	ENSPCIG00000001531	ENSPCIG00000031791	ENSPCIG00000015992	ENSPCIG00000017091	ENSPCIG00000015990	ENSPCIG00000021838	OBSCN (ENSPCIG00000021795) #13	ENSPCIG00000021839	ENSPCIG00000021842 #18	GJC2 (ENSPCIG00000021844) #19	ENSPCIG00000021846 #20	ENSPCIG00000021848	C1orf35 (ENSPCIG00000021849) #22	ARF1 (ENSPCIG00000021851) #23	WNT3A (ENSPCIG00000021855) #24	WNT9A (ENSPCIG00000030182) #25	ENSPCIG00000027274	ENSPCIG00000031488 #26	ENSPCIG00000001298	ENSPCIG00000001277	SNAP47 (ENSPCIG00000025912) #27	JMJD4 (ENSPCIG00000025913) #28	ALS2CL (ENSPCIG00000025915)	TMIE (ENSPCIG00000025919)	ENSPCIG00000025921	MYL3 (ENSPCIG00000006157)	PTH1R (ENSPCIG00000025925)	CCDC12 (ENSPCIG00000025941)
Tasmanian devil	MODERN SPECIES		ENSSHAG00000024915	ENSSHAG00000022645	ENSSHAG00000007146	ENSSHAG00000006552	ENSSHAG00000001445	ENSSHAG00000005659	ENSSHAG00000031960	ENSSHAG00000001927	ENSSHAG00000001725	ENSSHAG00000027621 #13	ENSSHAG00000015166	IBA57 (ENSSHAG00000026953) #18	GJC2 (ENSSHAG00000022939) #19	GUK1 (ENSSHAG00000014798) #20	MRPL55 (ENSSHAG00000027608) #21	C1orf35 (ENSSHAG00000014645) #22	ENSSHAG00000021122 #23	WNT3A (ENSSHAG00000023523) #24	WNT9A (ENSSHAG00000012600) #25	ENSSHAG00000023350	ENSSHAG00000023996 #26	ENSSHAG00000029686	SNAP47 (ENSSHAG00000009204) #27	JMJD4 (ENSSHAG00000009023) #28	ENSSHAG00000008746	ENSSHAG00000031952	ENSSHAG00000007862	ENSSHAG00000007071	ENSSHAG00000022564	MYL3 (ENSSHAG00000006447)	PTH1R (ENSSHAG00000002214)
Platypus	MODERN SPECIES	4	SEC22C (ENSOANG00000036395)	ENSOANG00000040878	ENSOANG00000048058	ENSOANG00000008946	ZBTB47 (ENSOANG00000010793)	KLHL40 (ENSOANG00000037937)	HHATL (ENSOANG00000004353)	HIGD1A (ENSOANG00000038143)	ENSOANG00000050342	ENSOANG00000050228	ENSOANG00000042737 #13	ENSOANG00000047271	IBA57 (ENSOANG00000049649) #18	GUK1 (ENSOANG00000036937) #20	ENSOANG00000046224	ENSOANG00000038636 #22	ARF1 (ENSOANG00000048039) #23	WNT9A (ENSOANG00000046921) #25	ENSOANG00000042376 #28	ENSOANG00000037642	ENSOANG00000046262	MYL3 (ENSOANG00000005484)	PTH1R (ENSOANG00000039996)	CCDC12 (ENSOANG00000044446)	ENSOANG00000050324	ENSOANG00000004262	NBEAL2 (ENSOANG00000044193)	ENSOANG00000048638	ENSOANG00000050792	KIF9 (ENSOANG00000038541)	KLHL18 (ENSOANG00000047602)
Sauria	ANCESTRAL SPECIES	15	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000166800
Lepidosauria	ANCESTRAL SPECIES	5	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #13	ENSGT00940000154756.B ##13	ENSGT00940000177473	ENSGT00940000166913	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000166800
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000166913	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000166800
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000153709.B.j	ENSGT00940000153709.B.i	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Elapidae	ANCESTRAL SPECIES	24	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000153709.B.j	ENSGT00940000153709.B.i	ENSGT00940000154756.A.nd #13	ENSGT00940000154756.B ##13	ENSGT00940000177473	ENSGT00940000168428	ENSGT00940000154756.A.md.b #13	ENSGT00940000154756.A.md.a #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.a.a ##23	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026	ENSGT00390000000410.fb.b
Elapidae_a	ANCESTRAL SPECIES	91	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000153709.B.j	ENSGT00940000153709.B.i	ENSGT00940000154756.A.nd #13	ENSGT00940000168428	ENSGT00940000154756.A.md.b #13	ENSGT00940000154756.A.md.a #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.a.a ##23	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026	ENSGT00390000000410.fb.b
Acanthophiinae	ANCESTRAL SPECIES	95	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000153709.B.j	ENSGT00940000153709.B.i	ENSGT00940000154756.A.nd #13	ENSGT00940000174795	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.a.a ##23	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573
Eastern brown snake	MODERN SPECIES	134	ENSPTXG00000009654	ENSPTXG00000009653	ENSPTXG00000009652 #13	ENSPTXG00000009651 #13	ENSPTXG00000009650	ENSPTXG00000009649 ##13	ENSPTXG00000009648	ENSPTXG00000009647 #13	ENSPTXG00000009646 #13	ENSPTXG00000009645 #13	ENSPTXG00000009643 #13	IBA57 (ENSPTXG00000009642) #18	GJC2 (ENSPTXG00000009641) #19	GUK1 (ENSPTXG00000009640) #20	ENSPTXG00000009639	C1orf35 (ENSPTXG00000009638) #22	ENSPTXG00000009637 ##23	ENSPTXG00000009636	WNT9A (ENSPTXG00000009631) #25
Mainland tiger snake	MODERN SPECIES	188	ENSNSUG00000014678	ENSNSUG00000014681	ENSNSUG00000014682	KLHL40 (ENSNSUG00000014683)	HHATL (ENSNSUG00000014684)	ENSNSUG00000014686	ENSNSUG00000014687	ENSNSUG00000014688	ENSNSUG00000014689	ENSNSUG00000014691 #13	ENSNSUG00000014692 #13	ENSNSUG00000014693	IBA57 (ENSNSUG00000014694) #18	GJC2 (ENSNSUG00000014695) #19	ENSNSUG00000014696	C1orf35 (ENSNSUG00000014697) #22	ENSNSUG00000014698 ##23	ENSNSUG00000014699	SNAP47 (ENSNSUG00000014700) #27	JMJD4 (ENSNSUG00000014701) #28
Blue-lipped sea krait	MODERN SPECIES	8244														ENSLLTG00000012077	ENSLLTG00000012087	ENSLLTG00000012105 #22
Indian cobra	MODERN SPECIES	337	CCDC13 (ENSNNAG00000009418)	ENSNNAG00000009402	ENSNNAG00000009388	ENSNNAG00000009366	ENSNNAG00000009323 #13	ENSNNAG00000009296 ##13	ENSNNAG00000009270 #13	ENSNNAG00000009254 #13	ENSNNAG00000009220 #13	ENSNNAG00000009207 #13	ENSNNAG00000009177	IBA57 (ENSNNAG00000009159) #18	GJC2 (ENSNNAG00000009149) #19	GUK1 (ENSNNAG00000009097) #20	ENSNNAG00000009060	C1orf35 (ENSNNAG00000009012) #22	ARF1 (ENSNNAG00000008988) ##23	ENSNNAG00000008905	SNAP47 (ENSNNAG00000008865) #27	JMJD4 (ENSNNAG00000008825) #28	MYL3 (ENSNNAG00000008789)	NBEAL2 (ENSNNAG00000008452)	ENSNNAG00000008353	ENSNNAG00000008332	ENSNNAG00000008302	ENSNNAG00000008281	ENSNNAG00000008261	BPNT2 (ENSNNAG00000008231)	GALNT4 (ENSNNAG00000008216)	ENSNNAG00000008191	EHD3 (ENSNNAG00000008108)
Lizard	MODERN SPECIES	5	ZBTB47 (ENSACAG00000006705)	ENSACAG00000006735	HHATL (ENSACAG00000006760)	ENSACAG00000006787	ENSACAG00000043949	ENSACAG00000038888	ENSACAG00000039408	ENSACAG00000038024	OBSCN (ENSACAG00000006816) #13	ENSACAG00000006871	IBA57 (ENSACAG00000006874) #18	GJC2 (ENSACAG00000006876) #19	GUK1 (ENSACAG00000006879) #20	ENSACAG00000006897	ENSACAG00000040651	C1orf35 (ENSACAG00000006899) #22	ARF1 (ENSACAG00000006923) #23	WNT3A (ENSACAG00000040979) #24	ENSACAG00000012183	ENSACAG00000034573	NUB1 (ENSACAG00000012076)	ENSACAG00000036256	WDR86 (ENSACAG00000002245)	CRYGN (ENSACAG00000002251)	RHEB (ENSACAG00000038398)	PRKAG2 (ENSACAG00000002337)	ENSACAG00000037326	GALNT11 (ENSACAG00000014168)	KMT2C (ENSACAG00000014195)	XRCC2 (ENSACAG00000035126)	ENSACAG00000010629
Laterata	ANCESTRAL SPECIES	10	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT00940000153709.B.j	ENSGT00940000153709.B.i	ENSGT00940000154756.A #13	ENSGT00940000166913	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000166800
Common wall lizard	MODERN SPECIES	3	ENSPMRG00000017859	KLHL40 (ENSPMRG00000017856)	HHATL (ENSPMRG00000017849)	ENSPMRG00000017843	ENSPMRG00000017835	ENSPMRG00000017827	ENSPMRG00000017824	ENSPMRG00000017370	ENSPMRG00000017361 #13	ENSPMRG00000017354	IBA57 (ENSPMRG00000017347) #18	GJC2 (ENSPMRG00000017345) #19	ENSPMRG00000017341	GUK1 (ENSPMRG00000017329) #20	ENSPMRG00000017319	C1orf35 (ENSPMRG00000017303) #22	ARF1 (ENSPMRG00000017293) #23	WNT3A (ENSPMRG00000017286) #24	WNT9A (ENSPMRG00000017281) #25	SNAP47 (ENSPMRG00000017275) #27	JMJD4 (ENSPMRG00000017270) #28	ALS2CL (ENSPMRG00000017261)	ENSPMRG00000017254	MYL3 (ENSPMRG00000017241)	PTH1R (ENSPMRG00000017227)	CCDC12 (ENSPMRG00000017214)	NBEAL2 (ENSPMRG00000016501)	ENSPMRG00000016324	ENSPMRG00000016319	ENSPMRG00000016314	SETD2 (ENSPMRG00000016302)
Argentine black and white tegu	MODERN SPECIES	5	HHATL (ENSSMRG00000016857)	CCDC13 (ENSSMRG00000016861)	HIGD1A (ENSSMRG00000016870)	ENSSMRG00000016871	ENSSMRG00000016872	ENSSMRG00000016874	OBSCN (ENSSMRG00000016892) #13	ENSSMRG00000016912	IBA57 (ENSSMRG00000016914) #18	GJC2 (ENSSMRG00000016916) #19	GUK1 (ENSSMRG00000016925) #20	ENSSMRG00000016927	TMEM42 (ENSSMRG00000016928)	KIF15 (ENSSMRG00000016931)	KIAA1143 (ENSSMRG00000016933)	C1orf35 (ENSSMRG00000016934) #22	ENSSMRG00000016936 ##23	WNT3A (ENSSMRG00000016949) #24	WNT9A (ENSSMRG00000016952) #25	ENSSMRG00000016954	SNAP47 (ENSSMRG00000016956) #27	JMJD4 (ENSSMRG00000016957) #28	ALS2CL (ENSSMRG00000016960)	ENSSMRG00000016967	MYL3 (ENSSMRG00000016969)	PTH1R (ENSSMRG00000016972)	CCDC12 (ENSSMRG00000016974)	NBEAL2 (ENSSMRG00000016986)	ENSSMRG00000016998	ENSSMRG00000016999	SETD2 (ENSSMRG00000017006)
tuatara	MODERN SPECIES	1269									ENSSPUG00000000769	ENSSPUG00000000763	ENSSPUG00000000760	ENSSPUG00000000745	ENSSPUG00000000742	GUK1 (ENSSPUG00000000738) #20	ENSSPUG00000000735	C1orf35 (ENSSPUG00000000694) #22	ARF1 (ENSSPUG00000000686) #23	WNT3A (ENSSPUG00000000676) #24	WNT9A (ENSSPUG00000000663) #25	SNAP47 (ENSSPUG00000000649) #27	JMJD4 (ENSSPUG00000000632) #28	ALS2CL (ENSSPUG00000000502)	ENSSPUG00000000482
Archelosauria	ANCESTRAL SPECIES	6	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000166800
Archosauria	ANCESTRAL SPECIES		ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000177473	ENSGT00940000154756.B ##13	ENSGT00940000154756.A #13	ENSGT00940000166913	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000166800
Aves	ANCESTRAL SPECIES	5	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #13	ENSGT00940000154756.B ##13	ENSGT00940000166913	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533
Neognathae	ANCESTRAL SPECIES		ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #13	ENSGT00940000154756.B ##13	ENSGT00940000166913	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533
Galloanserae	ANCESTRAL SPECIES		ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533
Anatidae	ANCESTRAL SPECIES	1	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Duck	MODERN SPECIES	10	KLHL40 (ENSAPLG00000012893)	NKTR (ENSAPLG00000012358)	HHATL (ENSAPLG00000013163)	CCDC13 (ENSAPLG00000013331)	ACKR2 (ENSAPLG00000000705)	ENSAPLG00000019155 ##13	ENSAPLG00000024143	ENSAPLG00000031005 #13	ENSAPLG00000026129 #13	ENSAPLG00000017812 #13	ENSAPLG00000020914 #13	ENSAPLG00000030118	GJC2 (ENSAPLG00000000708) #19	GUK1 (ENSAPLG00000004222) #20	ENSAPLG00000027242	C1orf35 (ENSAPLG00000004460) #22	ARF1 (ENSAPLG00000022202) #23	WNT3A (ENSAPLG00000004673) #24	CDC25A (ENSAPLG00000008300)	ENSAPLG00000028085	ENSAPLG00000028437	DHX30 (ENSAPLG00000015682)	SMARCC1 (ENSAPLG00000014937)	SCAP (ENSAPLG00000014099)	ENSAPLG00000020733	ENSAPLG00000030207	KLHL18 (ENSAPLG00000004276)	ENSAPLG00000022471	ENSAPLG00000004917	CCDC12 (ENSAPLG00000005482)	PTH1R (ENSAPLG00000005598)
Pink-footed goose	MODERN SPECIES	35	VIPR1 (ENSABRG00000001593)	SEC22C (ENSABRG00000001638)	NKTR (ENSABRG00000001684)	ZBTB47 (ENSABRG00000001728)	KLHL40 (ENSABRG00000001748)	HHATL (ENSABRG00000001773)	CCDC13 (ENSABRG00000001846)	HIGD1A (ENSABRG00000001881)	ACKR2 (ENSABRG00000001902)	CYP8B1 (ENSABRG00000001928)	ENSABRG00000002728	IBA57 (ENSABRG00000002749) #18	GJC2 (ENSABRG00000002777) #19	GUK1 (ENSABRG00000002795) #20	ENSABRG00000002808	C1orf35 (ENSABRG00000002825) #22	ARF1 (ENSABRG00000002849) #23	WNT3A (ENSABRG00000002868) #24	WNT9A (ENSABRG00000002871) #25	SNAP47 (ENSABRG00000002910) #27	JMJD4 (ENSABRG00000002916) #28	ALS2CL (ENSABRG00000002939)	ENSABRG00000003061	MYL3 (ENSABRG00000003074)	PTH1R (ENSABRG00000003090)	CCDC12 (ENSABRG00000003132)	NBEAL2 (ENSABRG00000003189)	ENSABRG00000003879	ENSABRG00000003891
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533
Japanese quail	MODERN SPECIES	11	NKTR (ENSCJPG00005010507)	ENSCJPG00005010508	ZBTB47 (ENSCJPG00005010509)	KLHL40 (ENSCJPG00005010510)	HHATL (ENSCJPG00005010511)	CCDC13 (ENSCJPG00005010525)	HIGD1A (ENSCJPG00005010526)	ACKR2 (ENSCJPG00005010527)	CYP8B1 (ENSCJPG00005010528)	ENSCJPG00005010530	ENSCJPG00005010531	IBA57 (ENSCJPG00005010532) #18	GJC2 (ENSCJPG00005010533) #19	GUK1 (ENSCJPG00005010534) #20	ENSCJPG00005010535	C1orf35 (ENSCJPG00005010536) #22	ARF1 (ENSCJPG00005010537) #23	WNT3A (ENSCJPG00005010538) #24	WNT9A (ENSCJPG00005010543) #25	SNAP47 (ENSCJPG00005010550) #27	JMJD4 (ENSCJPG00005010551) #28	ALS2CL (ENSCJPG00005010552)	ENSCJPG00005010554	MYL3 (ENSCJPG00005010555)	PTH1R (ENSCJPG00005010557)	CCDC12 (ENSCJPG00005010559)	ENSCJPG00005010567	SETD2 (ENSCJPG00005010568)	KIF9 (ENSCJPG00005010569)	KLHL18 (ENSCJPG00005010599)	CJ-CATH3 (ENSCJPG00005010622)
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533
Chicken	MODERN SPECIES	11	VIPR1 (ENSGALG00010027363)	SEC22C (ENSGALG00010027367)	NKTR (ENSGALG00010027374)	ZBTB47 (ENSGALG00010027378)	KLHL40 (ENSGALG00010027381)	HHATL (ENSGALG00010027384)	ENSGALG00010027387	HIGD1C (ENSGALG00010027707)	ACKR2 (ENSGALG00010027403)	OBSCN (ENSGALG00010025849) #13	ENSGALG00010025962	IBA57 (ENSGALG00010026030) #18	GJC2 (ENSGALG00010026011) #19	GUK1 (ENSGALG00010026040) #20	ENSGALG00010026064	C2H1orf35 (ENSGALG00010026076) #22	ARF1 (ENSGALG00010026097) #23	WNT3A (ENSGALG00010026141) #24	WNT9A (ENSGALG00010026166) #25	SNAP47 (ENSGALG00010024865) #27	JMJD4 (ENSGALG00010024874) #28	ALS2CL (ENSGALG00010024904)	ENSGALG00010024916	MYL3 (ENSGALG00010025568)	PTH2R (ENSGALG00010025577)	ENSGALG00010025584	CCDC12 (ENSGALG00010025606)	NBEAL2 (ENSGALG00010025645)	ENSGALG00010025671	ENSGALG00010025691	SETD2 (ENSGALG00010025723)
Turkey	MODERN SPECIES	26	VIPR1 (ENSMGAG00000001795)	SEC22C (ENSMGAG00000002268)	NKTR (ENSMGAG00000002292)	ZBTB47 (ENSMGAG00000002353)	ENSMGAG00000002375	HHATL (ENSMGAG00000002393)	CCDC13 (ENSMGAG00000002402)	HIGD1A (ENSMGAG00000002410)	ACKR2 (ENSMGAG00000002448)	ENSMGAG00000015992	ENSMGAG00000017782	IBA57 (ENSMGAG00000002535) #18	GJC2 (ENSMGAG00000002549) #19	GUK1 (ENSMGAG00000002569) #20	ENSMGAG00000018773	C1orf35 (ENSMGAG00000002619) #22	ARF1 (ENSMGAG00000002635) #23	WNT3A (ENSMGAG00000002648) #24	WNT9A (ENSMGAG00000010719) #25	SNAP47 (ENSMGAG00000002667) #27	JMJD4 (ENSMGAG00000002678) #28	ALS2CL (ENSMGAG00000002690)	ENSMGAG00000020342	MYL3 (ENSMGAG00000002731)	PTH1R (ENSMGAG00000002767)	CCDC12 (ENSMGAG00000002815)	NBEAL2 (ENSMGAG00000002828)	ENSMGAG00000020264	SETD2 (ENSMGAG00000002874)	KIF9 (ENSMGAG00000002896)	KLHL18 (ENSMGAG00000002927)
Neognathae_b	ANCESTRAL SPECIES	9	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #13	ENSGT00940000154756.B ##13	ENSGT00940000166913	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Neognathae_c	ANCESTRAL SPECIES	12	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #13	ENSGT00940000168031	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00390000018786	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Golden eagle	MODERN SPECIES	19	ENSACCG00020012910	ENSACCG00020012929	ZBTB47 (ENSACCG00020012943)	KLHL40 (ENSACCG00020012966)	HHATL (ENSACCG00020013024)	CCDC13 (ENSACCG00020013054)	HIGD1A (ENSACCG00020013074)	ACKR2 (ENSACCG00020013098)	CYP8B1 (ENSACCG00020013113)	OBSCN (ENSACCG00020013522) #13	ENSACCG00020013855	IBA57 (ENSACCG00020013879) #18	GJC2 (ENSACCG00020013898) #19	GUK1 (ENSACCG00020013918) #20	ENSACCG00020013934	C1orf35 (ENSACCG00020013955) #22	ARF1 (ENSACCG00020013970) #23	WNT3A (ENSACCG00020013989) #24	WNT9A (ENSACCG00020014006) #25	SNAP47 (ENSACCG00020014024) #27	JMJD4 (ENSACCG00020014040) #28	ALS2CL (ENSACCG00020014088)	ENSACCG00020014178	MYL3 (ENSACCG00020014220)	ENSACCG00020014254	PTH1R (ENSACCG00020014276)	CCDC12 (ENSACCG00020014293)	ENSACCG00020014795	SETD2 (ENSACCG00020014831)	KIF9 (ENSACCG00020014934)	KLHL18 (ENSACCG00020015049)
Kakapo	MODERN SPECIES		NKTR (ENSSHBG00005003779)	ZBTB47 (ENSSHBG00005003771)	KLHL40 (ENSSHBG00005003760)	HHATL (ENSSHBG00005003739)	CCDC13 (ENSSHBG00005003724)	HIGD1A (ENSSHBG00005003716)	ACKR2 (ENSSHBG00005003711)	CYP8B1 (ENSSHBG00005003705)	ENSSHBG00005003697 #13	ENSSHBG00005003632 #13	ENSSHBG00005003593	IBA57 (ENSSHBG00005003583) #18	GJC2 (ENSSHBG00005003575) #19	GUK1 (ENSSHBG00005003565) #20	ENSSHBG00005003555	C1orf35 (ENSSHBG00005003549) #22	ARF1 (ENSSHBG00005003540) #23	WNT3A (ENSSHBG00005003522) #24	WNT9A (ENSSHBG00005003511) #25	SNAP47 (ENSSHBG00005003498) #27	JMJD4 (ENSSHBG00005003484) #28	ALS2CL (ENSSHBG00005003439)	ENSSHBG00005003404	MYL3 (ENSSHBG00005003389)	PTH1R (ENSSHBG00005003364)	CCDC12 (ENSSHBG00005003351)	ENSSHBG00005003101	ENSSHBG00005003081	SETD2 (ENSSHBG00005003069)	KIF9 (ENSSHBG00005003045)	KLHL18 (ENSSHBG00005003023)
Passeriformes	ANCESTRAL SPECIES		ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #13	ENSGT00940000154756.B ##13	ENSGT00940000166913	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618.g.a #25	ENSGT00940000159618.h #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00390000018786	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Great tit	MODERN SPECIES	11	SEC22C (ENSPMJG00000004290)	NKTR (ENSPMJG00000004257)	ZBTB47 (ENSPMJG00000004252)	KLHL40 (ENSPMJG00000004248)	HHATL (ENSPMJG00000004245)	CCDC13 (ENSPMJG00000004231)	HIGD1A (ENSPMJG00000004228)	ACKR2 (ENSPMJG00000004227)	CYP8B1 (ENSPMJG00000004221)	OBSCN (ENSPMJG00000004019) #13	ENSPMJG00000004007	IBA57 (ENSPMJG00000004004) #18	GJC2 (ENSPMJG00000004002) #19	GUK1 (ENSPMJG00000003992) #20	ENSPMJG00000003975	C1orf35 (ENSPMJG00000003973) #22	ARF1 (ENSPMJG00000003968) #23	ENSPMJG00000003967	WNT3A (ENSPMJG00000003960) #24	WNT9A (ENSPMJG00000003940) #25	ENSPMJG00000003920	CHPF2 (ENSPMJG00000003917)	ABCF2 (ENSPMJG00000003914)	H2BK1 (ENSPMJG00000003913)	ASB10 (ENSPMJG00000003911)	GBX1 (ENSPMJG00000003909)	AGAP3 (ENSPMJG00000003897)	ENSPMJG00000003896	TMUB1 (ENSPMJG00000003895)	FASTK (ENSPMJG00000003892)	SLC4A2 (ENSPMJG00000003885)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #13	ENSGT00940000154756.B ##13	ENSGT00940000166913	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618.g.a #25	ENSGT00940000159618.h #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00390000018786	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Passeriformes_g	ANCESTRAL SPECIES	6	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A #13	ENSGT00940000154756.B ##13	ENSGT00940000166913	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618.g.a #25	ENSGT00940000159618.h #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00390000018786	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Medium ground finch	MODERN SPECIES	177	KLHL40 (ENSGFOG00000010820)	HHATL (ENSGFOG00000010830)	CCDC13 (ENSGFOG00000010846)	HIGD1A (ENSGFOG00000010858)	ACKR2 (ENSGFOG00000010862)	CYP8B1 (ENSGFOG00000010868)	ENSGFOG00000010871 #13	ENSGFOG00000010877 #13	ENSGFOG00000010884 #13	ENSGFOG00000010890 #13	ENSGFOG00000010923	IBA57 (ENSGFOG00000010927) #18	GJC2 (ENSGFOG00000010930) #19	GUK1 (ENSGFOG00000010932) #20	ENSGFOG00000010938	C1orf35 (ENSGFOG00000010942) #22	ARF1 (ENSGFOG00000010950) #23	WNT3A (ENSGFOG00000010955) #24
Passeroidea	ANCESTRAL SPECIES	6	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00960000193277.a	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618.g.a #25	ENSGT00940000159618.g.b #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00390000018786	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Zebra finch	MODERN SPECIES	12	HHATL (ENSTGUG00000000261)	CCDC13 (ENSTGUG00000000260)	HIGD1A (ENSTGUG00000019656)	ACKR2 (ENSTGUG00000000256)	CYP8B1 (ENSTGUG00000000254)	ENSTGUG00000027535 ##13	ENSTGUG00000020352 #13	ENSTGUG00000027931 ##13	ENSTGUG00000028042 #13	ENSTGUG00000022363	IBA57 (ENSTGUG00000000247) #18	ENSTGUG00000025629	GJC2 (ENSTGUG00000000246) #19	GUK1 (ENSTGUG00000000236) #20	ENSTGUG00000023071	ENSTGUG00000021273 #22	ARF1 (ENSTGUG00000000233) #23	WNT3A (ENSTGUG00000023348) #24	WNT9A (ENSTGUG00000026480) #25	SNAP47 (ENSTGUG00000000221) #27	JMJD4 (ENSTGUG00000000219) #28	ALS2CL (ENSTGUG00000000211)	ENSTGUG00000019396	ENSTGUG00000000210	MYL3 (ENSTGUG00000000207)	PTH1R (ENSTGUG00000000188)	CCDC12 (ENSTGUG00000022076)	ENSTGUG00000000173	SETD2 (ENSTGUG00000000164)	ENSTGUG00000000157	KLHL18 (ENSTGUG00000000150)
Common canary	MODERN SPECIES	5	ENSSCAG00000006150	ENSSCAG00000006143	ENSSCAG00000006137 #13	ENSSCAG00000006133 ##13	ENSSCAG00000006129 ##13	ENSSCAG00000006128 ##13	ENSSCAG00000006120 #13	ENSSCAG00000006118 #13	ENSSCAG00000006113	IBA57 (ENSSCAG00000006110) #18	GJC2 (ENSSCAG00000006108) #19	ENSSCAG00000006107	ENSSCAG00000006103	GUK1 (ENSSCAG00000006099) #20	ENSSCAG00000006094	C1orf35 (ENSSCAG00000006089) #22	ARF1 (ENSSCAG00000006081) #23	WNT3A (ENSSCAG00000006073) #24	ENSSCAG00000006067 #25	SNAP47 (ENSSCAG00000006057) #27	JMJD4 (ENSSCAG00000006051) #28	ALS2CL (ENSSCAG00000006041)	ENSSCAG00000006038	MYL3 (ENSSCAG00000006032)	ENSSCAG00000006023	ENSSCAG00000006020	SETD2 (ENSSCAG00000005718)	KIF9 (ENSSCAG00000005693)	KLHL18 (ENSSCAG00000005688)	ENSSCAG00000005671	ENSSCAG00000005668
Flycatcher	MODERN SPECIES	11	ENSFALG00000023109	ENSFALG00000001007	HHATL (ENSFALG00000001013)	ENSFALG00000029078	HIGD1A (ENSFALG00000001030)	ACKR2 (ENSFALG00000014706)	ENSFALG00000014720	ENSFALG00000028775	OBSCN (ENSFALG00000001046) #13	ENSFALG00000001076	IBA57 (ENSFALG00000023883) #18	GJC2 (ENSFALG00000014739) #19	GUK1 (ENSFALG00000001079) #20	ENSFALG00000001082	ENSFALG00000001084	C1orf35 (ENSFALG00000027612) #22	ARF1 (ENSFALG00000026573) ##23	WNT3A (ENSFALG00000001092) #24	WNT9A (ENSFALG00000026631) #25	SNAP47 (ENSFALG00000001100) #27	JMJD4 (ENSFALG00000001104) #28	ALS2CL (ENSFALG00000001110)	ENSFALG00000025140	MYL3 (ENSFALG00000005210)	PTH1R (ENSFALG00000005256)	ENSFALG00000029003	ENSFALG00000001918	ENSFALG00000027627	SETD2 (ENSFALG00000001922)	KIF9 (ENSFALG00000001936)	KLHL18 (ENSFALG00000001943)
Australian saltwater crocodile	MODERN SPECIES		ENSCPRG00005002437 #13	ENSCPRG00005002440	ENSCPRG00005002442 ##13	ENSCPRG00005002444 ##13	ENSCPRG00005002447 ##13	ENSCPRG00005002464 #13	ENSCPRG00005002468 #13	ENSCPRG00005002473 #13	ENSCPRG00005002477 #13	ENSCPRG00005002479 #13	ENSCPRG00005002481	IBA57 (ENSCPRG00005002483) #18	GJC2 (ENSCPRG00005002486) #19	GUK1 (ENSCPRG00005002512) #20	ENSCPRG00005002519	C1orf35 (ENSCPRG00005002524) #22	ARF1 (ENSCPRG00005002526) #23	WNT3A (ENSCPRG00005002546) #24	WNT9A (ENSCPRG00005002553) #25	ENSCPRG00005002586	SNAP47 (ENSCPRG00005002614) #27	JMJD4 (ENSCPRG00005002616) #28	ALS2CL (ENSCPRG00005002624)	ENSCPRG00005002674	MYL3 (ENSCPRG00005002730)	PTH1R (ENSCPRG00005002800)	ENSCPRG00005002835	NBEAL2 (ENSCPRG00005002905)	ENSCPRG00005002928	ENSCPRG00005002930	ENSCPRG00005002936
Cryptodira	ANCESTRAL SPECIES	4	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00940000159338.c	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A.ce.a.b #13	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Testudinidae	ANCESTRAL SPECIES	1	ENSGT00940000159338.c	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A.ce.a.b #13	ENSGT00390000003267	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Goode s thornscrub tortoise	MODERN SPECIES	11	SEC22C (ENSGEVG00005015191)	NKTR (ENSGEVG00005015149)	ZBTB47 (ENSGEVG00005015102)	KLHL40 (ENSGEVG00005015018)	HHATL (ENSGEVG00005014986)	CCDC13 (ENSGEVG00005014944)	HIGD1A (ENSGEVG00005014926)	ACKR2 (ENSGEVG00005014904)	CYP8B1 (ENSGEVG00005014888)	OBSCN (ENSGEVG00005012558) #13	ENSGEVG00005012335	IBA57 (ENSGEVG00005012316) #18	GJC2 (ENSGEVG00005012284) #19	GUK1 (ENSGEVG00005012265) #20	ENSGEVG00005012238	C1orf35 (ENSGEVG00005012210) #22	ARF1 (ENSGEVG00005012184) #23	WNT3A (ENSGEVG00005012137) #24	WNT9A (ENSGEVG00005012041) #25	ENSGEVG00005011986	SNAP47 (ENSGEVG00005011922) #27	JMJD4 (ENSGEVG00005011871) #28	ALS2CL (ENSGEVG00005011324)	ENSGEVG00005011228	MYL3 (ENSGEVG00005011154)	PTH1R (ENSGEVG00005011114)	CCDC12 (ENSGEVG00005011072)	NBEAL2 (ENSGEVG00005010756)	ENSGEVG00005010646	SETD2 (ENSGEVG00005010484)	KIF9 (ENSGEVG00005010334)
Abingdon island giant tortoise	MODERN SPECIES	163	ENSCABG00000014876	ENSCABG00000014871	ENSCABG00000014869	ENSCABG00000014867	ENSCABG00000014861	ENSCABG00000014859 #13	ENSCABG00000014858 #13	ENSCABG00000014855 #13	ENSCABG00000014851 #13	ENSCABG00000014848 #13	ENSCABG00000014846	IBA57 (ENSCABG00000014842) #18	GJC2 (ENSCABG00000014839) #19	GUK1 (ENSCABG00000014832) #20	ENSCABG00000014828	C1orf35 (ENSCABG00000014826) #22	ARF1 (ENSCABG00000014823) #23
Emydidae	ANCESTRAL SPECIES	35	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT00940000154756.A.ce.a.a #13	ENSGT00390000003267	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00940000165232	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000161305	ENSGT00940000164845	ENSGT01030000234570.d.b.a.b.b.b	ENSGT00940000158574	ENSGT00390000011619	ENSGT00940000158454	ENSGT00940000165573	ENSGT00940000160086	ENSGT00940000158533	ENSGT00940000157026
Three-toed box turtle	MODERN SPECIES	48	ZBTB47 (ENSTMTG00000008346)	KLHL40 (ENSTMTG00000008321)	HHATL (ENSTMTG00000008279)	CCDC13 (ENSTMTG00000008247)	HIGD1A (ENSTMTG00000008234)	ENSTMTG00000008223	ENSTMTG00000008188 #13	ENSTMTG00000008168	ENSTMTG00000008161 #13	ENSTMTG00000008021 #13	ENSTMTG00000007970	IBA57 (ENSTMTG00000007959) #18	GJC2 (ENSTMTG00000007955) #19	GUK1 (ENSTMTG00000007938) #20	ENSTMTG00000007926	C1orf35 (ENSTMTG00000007919) #22	ARF1 (ENSTMTG00000007905) #23	WNT3A (ENSTMTG00000007868) #24	WNT9A (ENSTMTG00000007852) #25	ENSTMTG00000007845	SNAP47 (ENSTMTG00000007837) #27	JMJD4 (ENSTMTG00000007818) #28	ALS2CL (ENSTMTG00000007679)	ENSTMTG00000007651	MYL3 (ENSTMTG00000007625)	PTH1R (ENSTMTG00000007606)	CCDC12 (ENSTMTG00000007593)	NBEAL2 (ENSTMTG00000007411)	ENSTMTG00000007371	SETD2 (ENSTMTG00000007286)	KLHL18 (ENSTMTG00000007268)
painted turtle	MODERN SPECIES	749	ENSCPBG00000004337	ENSCPBG00000004311	ZBTB47 (ENSCPBG00000004296)	KLHL40 (ENSCPBG00000004071)	HHATL (ENSCPBG00000004042)	CCDC13 (ENSCPBG00000004012)	HIGD1A (ENSCPBG00000003994)	ACKR2 (ENSCPBG00000003986)	CYP8B1 (ENSCPBG00000003980)	OBSCN (ENSCPBG00000002168) #13	ENSCPBG00000001843	IBA57 (ENSCPBG00000001832) #18	GJC2 (ENSCPBG00000001821) #19	GUK1 (ENSCPBG00000001789) #20	ENSCPBG00000001771	C1orf35 (ENSCPBG00000001754) #22	ARF1 (ENSCPBG00000001732) #23	WNT3A (ENSCPBG00000001683) #24	WNT9A (ENSCPBG00000001669) #25	ENSCPBG00000001655	SNAP47 (ENSCPBG00000001637) #27	JMJD4 (ENSCPBG00000001622) #28	ALS2CL (ENSCPBG00000001553)	ENSCPBG00000001521	MYL3 (ENSCPBG00000001514)	PTH1R (ENSCPBG00000001485)
Chinese turtle	MODERN SPECIES	193											ENSPSIG00000011819	IBA57 (ENSPSIG00000011798) #18	GJC2 (ENSPSIG00000011379) #19	GUK1 (ENSPSIG00000011091) #20	ENSPSIG00000010893	C1orf35 (ENSPSIG00000010307) #22	ARF1 (ENSPSIG00000009767) #23	ENSPSIG00000009318	WNT9A (ENSPSIG00000009182) #25