Artiodactyla	ANCESTRAL SPECIES	31				ENSGT00940000163997	ENSGT00390000009510	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b	ENSGT01100000263514.A.e.b	ENSGT00940000162155	ENSGT00940000160371	ENSGT00940000154756.A #15	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Artiodactyla_a	ANCESTRAL SPECIES	7					ENSGT00390000009510	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b	ENSGT01100000263514.A.e.b	ENSGT00940000162155	ENSGT00940000160371	ENSGT00940000154756.A #15	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00940000162743	ENSGT00940000162181	ENSGT01030000234648.a.b.a.b	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.a.a
Artiodactyla_b	ANCESTRAL SPECIES	8				ENSGT00940000154756.A.kd.a #15	ENSGT00390000009510	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b	ENSGT01100000263514.A.e.b	ENSGT00940000162155	ENSGT00940000160371	ENSGT00940000154756.A.ld ##15	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00940000162743	ENSGT00940000162181	ENSGT01030000234648.a.b.a.b	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.a.a
Pecora	ANCESTRAL SPECIES		ENSGT00940000162816	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b	ENSGT01100000263514.A.e.b	ENSGT00940000162155	ENSGT00940000160371	ENSGT00940000154756.A.ld ##15	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Percora_a	ANCESTRAL SPECIES		ENSGT00940000162816	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b	ENSGT01100000263514.A.e.b	ENSGT00940000162155	ENSGT00940000160371	ENSGT00940000154756.A.ld ##15	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Bovidae	ANCESTRAL SPECIES		ENSGT00940000162181	ENSGT00940000162743	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b	ENSGT01100000263514.A.e.b	ENSGT00940000162155	ENSGT00940000160371	ENSGT00940000154756.A.ld ##15	ENSGT00940000154756.A.kd.b #16	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Bovinae	ANCESTRAL SPECIES	34	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00940000162743	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b	ENSGT01100000263514.A.e.b	ENSGT00940000162155	ENSGT00940000160371	ENSGT00940000154756.A.kd.b.a.a #17	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Bos	ANCESTRAL SPECIES	34	ENSGT00940000162181	ENSGT00940000162743	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b	ENSGT01100000263514.A.e.b	ENSGT00940000162155	ENSGT00940000160371	ENSGT00390000009312.n.b	ENSGT00940000154756.A.kd.b.a.a.b ##15	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Bos_a	ANCESTRAL SPECIES	29	ENSGT00940000162181	ENSGT00940000162743	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b	ENSGT01100000263514.A.e.b	ENSGT00940000162155	ENSGT00940000160371	ENSGT00390000009312.n.b	ENSGT00940000154756.A.kd.b.a.a.a #17	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00940000160464	ENSGT00390000004097.a
Wild yak	MODERN SPECIES	610									ENSBMUG00000013557 #15	ENSBMUG00000013541 #16	ENSBMUG00000013430 #17	IBA57 (ENSBMUG00000013400) #18	GJC2 (ENSBMUG00000013389) #19	GUK1 (ENSBMUG00000013370) #20	MRPL55 (ENSBMUG00000013341) #21	C1orf35 (ENSBMUG00000013244) #22	ARF1 (ENSBMUG00000013231) #23	WNT3A (ENSBMUG00000013208) #24	WNT9A (ENSBMUG00000013188) #25	PRSS38 (ENSBMUG00000013170) #26	SNAP47 (ENSBMUG00000013160) #27	JMJD4 (ENSBMUG00000013129) #28	ZNF354B (ENSBMUG00000013110) #29
Domestic yak	MODERN SPECIES	27	ZNF354C (ENSBGRG00000003526)	GRM6 (ENSBGRG00000003481)	ZNF454 (ENSBGRG00000003460)	ENSBGRG00000003452	RNF187 (ENSBGRG00000003438)	H2AC25 (ENSBGRG00000003429)	H3-4 (ENSBGRG00000003421)	ENSBGRG00000003415	TRIM17 (ENSBGRG00000003402)	TRIM11 (ENSBGRG00000003387)	ENSBGRG00000003375	IBA57 (ENSBGRG00000003172) #18	GJC2 (ENSBGRG00000003164) #19	GUK1 (ENSBGRG00000003137) #20	MRPL55 (ENSBGRG00000003109) #21	C1orf35 (ENSBGRG00000003092) #22	ARF1 (ENSBGRG00000003083) #23	WNT3A (ENSBGRG00000003066) #24	ENSBGRG00000003044	WNT9A (ENSBGRG00000003023) #25	PRSS38 (ENSBGRG00000002987) #26	SNAP47 (ENSBGRG00000002943) #27	JMJD4 (ENSBGRG00000002925) #28	ZNF354B (ENSBGRG00000002905) #29	ENSBGRG00000002896	ATP13A1 (ENSBGRG00000002465)	GMIP (ENSBGRG00000002278)	LPAR2 (ENSBGRG00000002227)	PBX4 (ENSBGRG00000002159)	CILP2 (ENSBGRG00000002130)	YJEFN3 (ENSBGRG00000002015)
Bos_b	ANCESTRAL SPECIES	36	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00940000162743	ENSGT00390000009510	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b	ENSGT01100000263514.A.e.b	ENSGT00940000162155	ENSGT00940000160371	ENSGT00390000009312.n.b	ENSGT00940000154756.A.kd.b.a.a.b ##15	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Cow	MODERN SPECIES	26	ENSBTAG00000052690	RNF187 (ENSBTAG00000019667)	H2BC26 (ENSBTAG00000053467)	H2AC25 (ENSBTAG00000037964)	H3-4 (ENSBTAG00000055153)	TRIM17 (ENSBTAG00000018673)	TRIM11 (ENSBTAG00000039246)	ENSBTAG00000007820	ENSBTAG00000040028 #17	ENSBTAG00000051744 #17	ENSBTAG00000049190 ##15	IBA57 (ENSBTAG00000014918) #18	GJC2 (ENSBTAG00000014916) #19	GUK1 (ENSBTAG00000014775) #20	MRPL55 (ENSBTAG00000020721) #21	C7H1orf35 (ENSBTAG00000020720) #22	ARF1 (ENSBTAG00000007725) #23	WNT3A (ENSBTAG00000039397) #24	WNT9A (ENSBTAG00000020267) #25	PRSS38 (ENSBTAG00000013977) #26	SNAP47 (ENSBTAG00000004188) #27	JMJD4 (ENSBTAG00000004191) #28	ZNF354B (ENSBTAG00000017123) #29	ENSBTAG00000052161	ATP13A1 (ENSBTAG00000007128)	GMIP (ENSBTAG00000015144)	LPAR2 (ENSBTAG00000004652)	PBX4 (ENSBTAG00000009975)	CILP2 (ENSBTAG00000014969)	YJEFN3 (ENSBTAG00000014968)	NDUFA13 (ENSBTAG00000007812)
Hybrid Bos Indicus	MODERN SPECIES	26	GRM6 (ENSBIXG00005029370)	ZNF454 (ENSBIXG00005029356)	RNF187 (ENSBIXG00005029336)	H2BC26 (ENSBIXG00005029334)	H2AC25 (ENSBIXG00005029330)	ENSBIXG00005029327	H3-4 (ENSBIXG00005029320)	TRIM17 (ENSBIXG00005029306)	TRIM11 (ENSBIXG00005029289)	ENSBIXG00005029278	OBSCN (ENSBIXG00005010529) ##15	ENSBIXG00005010951	IBA57 (ENSBIXG00005010975) #18	GUK1 (ENSBIXG00005011045) #20	MRPL55 (ENSBIXG00005011160) #21	C1orf35 (ENSBIXG00005001035) #22	ARF1 (ENSBIXG00005011212) #23	WNT3A (ENSBIXG00005011222) #24	WNT9A (ENSBIXG00005006783) #25	PRSS38 (ENSBIXG00005011238) #26	ENSBIXG00005011249	ENSBIXG00005001061	ENSBIXG00005011259	SNAP47 (ENSBIXG00005011285) #27	JMJD4 (ENSBIXG00005005916) #28	ENSBIXG00005000504	ZNF354B (ENSBIXG00005011307) #29	ENSBIXG00005011324	ATP13A1 (ENSBIXG00005011383)	GMIP (ENSBIXG00005011455)	LPAR2 (ENSBIXG00005011498)
American bison	MODERN SPECIES	3165				H3-4 (ENSBBBG00000004059)	TRIM17 (ENSBBBG00000016399)	TRIM11 (ENSBBBG00000016378)	ENSBBBG00000016369 #17	ENSBBBG00000016357 #17	ENSBBBG00000016350 ##15	ENSBBBG00000016344 ##15	ENSBBBG00000016327 ##15	ENSBBBG00000016321	IBA57 (ENSBBBG00000016303) #18	GUK1 (ENSBBBG00000004041) #20	MRPL55 (ENSBBBG00000004037) #21	C1orf35 (ENSBBBG00000016183) #22	ARF1 (ENSBBBG00000016170) #23	WNT3A (ENSBBBG00000016145) #24	WNT9A (ENSBBBG00000016116) #25	PRSS38 (ENSBBBG00000016108) #26	SNAP47 (ENSBBBG00000007139) #27	JMJD4 (ENSBBBG00000016083) #28	ZNF354B (ENSBBBG00000016063) #29	ENSBBBG00000016056	ATP13A1 (ENSBBBG00000003990)	GMIP (ENSBBBG00000016022)	LPAR2 (ENSBBBG00000015996)	PBX4 (ENSBBBG00000015984)	CILP2 (ENSBBBG00000015975)	YJEFN3 (ENSBBBG00000015957)	NDUFA13 (ENSBBBG00000015950)
Caprinae	ANCESTRAL SPECIES	32	ENSGT01030000234648.a.b.a.b	ENSGT00940000162181	ENSGT00940000162743	ENSGT00390000008694.b.b.c.b.cb.b	ENSGT00390000009510	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b	ENSGT01100000263514.A.e.b	ENSGT00940000162155	ENSGT00940000160371	ENSGT00940000154756.A.ld ##15	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00730000111029.e.a	ENSGT00550000075064	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643.a	ENSGT00390000008152.B.a	ENSGT00390000007227.b	ENSGT00390000000719
Goat	MODERN SPECIES	26	GRM6 (ENSCHIG00000024892)	ZNF454 (ENSCHIG00000013008)	ZFP2 (ENSCHIG00000010314)	ENSCHIG00000025835	RNF187 (ENSCHIG00000012732)	H2BC26 (ENSCHIG00000009284)	H2AC25 (ENSCHIG00000006649)	H3-4 (ENSCHIG00000008243)	TRIM17 (ENSCHIG00000017072)	TRIM11 (ENSCHIG00000010660)	OBSCN (ENSCHIG00000026141) ##15	IBA57 (ENSCHIG00000025813) #18	GJC2 (ENSCHIG00000012045) #19	GUK1 (ENSCHIG00000020301) #20	MRPL55 (ENSCHIG00000024153) #21	C1orf35 (ENSCHIG00000020666) #22	ARF1 (ENSCHIG00000010924) #23	WNT3A (ENSCHIG00000016159) #24	WNT9A (ENSCHIG00000009523) #25	ENSCHIG00000004906	SNAP47 (ENSCHIG00000025042) #27	JMJD4 (ENSCHIG00000001908) #28	ZNF354B (ENSCHIG00000024384) #29	ENSCHIG00000027175	ATP13A1 (ENSCHIG00000027146)	GMIP (ENSCHIG00000006935)	LPAR2 (ENSCHIG00000026267)	PBX4 (ENSCHIG00000020490)	CILP2 (ENSCHIG00000016599)	YJEFN3 (ENSCHIG00000022695)	NDUFA13 (ENSCHIG00000005106)
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020016295 ##15	ZNF354C (ENSOARG00020016338)	GRM6 (ENSOARG00020016554)	ZNF454 (ENSOARG00020016811)	ZFP2 (ENSOARG00020016872)	RNF187 (ENSOARG00020016886)	HIST3H2BB (ENSOARG00020016921)	H2AC25 (ENSOARG00020016951)	H3-4 (ENSOARG00020016979)	TRIM17 (ENSOARG00020017007)	TRIM11 (ENSOARG00020017090)	IBA57 (ENSOARG00020018299) #18	GJC2 (ENSOARG00020018337) #19	GUK1 (ENSOARG00020018354) #20	MRPL55 (ENSOARG00020018459) #21	C1orf35 (ENSOARG00020018506) #22	ARF1 (ENSOARG00020018572) #23	WNT3A (ENSOARG00020018613) #24	ENSOARG00020018666	WNT9A (ENSOARG00020018708) #25	PRSS38 (ENSOARG00020018766) #26	SNAP47 (ENSOARG00020018819) #27	ZNF354B (ENSOARG00020018905) #29	ENSOARG00020018960	ATP13A1 (ENSOARG00020019002)	GMIP (ENSOARG00020019185)	LPAR2 (ENSOARG00020019376)	CILP2 (ENSOARG00020019527)	YJEFN3 (ENSOARG00020019633)	NDUFA13 (ENSOARG00020019709)	TSSK6 (ENSOARG00020019749)
Siberian musk deer	MODERN SPECIES	1213	ZNF354C (ENSMMSG00000024233)	ZNF879 (ENSMMSG00000019906)	GRM6 (ENSMMSG00000019933)	ZNF454 (ENSMMSG00000019980)	RNF187 (ENSMMSG00000020017)	H2BC26 (ENSMMSG00000020045)	H2AC25 (ENSMMSG00000020054)	H3-4 (ENSMMSG00000020062)	TRIM17 (ENSMMSG00000020070)	TRIM11 (ENSMMSG00000020106)	OBSCN (ENSMMSG00000020369) ##15	IBA57 (ENSMMSG00000022482) #18	GJC2 (ENSMMSG00000022491) #19	GUK1 (ENSMMSG00000022498) #20	MRPL55 (ENSMMSG00000022520) #21	C1orf35 (ENSMMSG00000022529) #22	ARF1 (ENSMMSG00000022533) #23	WNT3A (ENSMMSG00000022541) #24	WNT9A (ENSMMSG00000022550) #25	PRSS38 (ENSMMSG00000022575) #26	ENSMMSG00000022591	SNAP47 (ENSMMSG00000022600) #27	JMJD4 (ENSMMSG00000022617) #28	ZNF354B (ENSMMSG00000022631) #29	ENSMMSG00000022637
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000009280	ENSCHYG00000009333	RNF187 (ENSCHYG00000009353)	ENSCHYG00000009390	H2AC25 (ENSCHYG00000009419)	H3-4 (ENSCHYG00000009438)	TRIM17 (ENSCHYG00000009461)	TRIM11 (ENSCHYG00000009542)	ENSCHYG00000009620 ##15	ENSCHYG00000009774 ##15	ENSCHYG00000009985	IBA57 (ENSCHYG00000010014) #18	GJC2 (ENSCHYG00000010036) #19	GUK1 (ENSCHYG00000010059) #20	MRPL55 (ENSCHYG00000010212) #21	C1orf35 (ENSCHYG00000010289) #22	ENSCHYG00000010399 #23	WNT3A (ENSCHYG00000010445) #24	WNT9A (ENSCHYG00000010511) #25	PRSS38 (ENSCHYG00000010560) #26	SNAP47 (ENSCHYG00000010619) #27	JMJD4 (ENSCHYG00000010663) #28	ENSCHYG00000010707	ZNF354B (ENSCHYG00000010723) #29	ENSCHYG00000010766	ATP13A1 (ENSCHYG00000010816)	GMIP (ENSCHYG00000011272)	LPAR2 (ENSCHYG00000011542)	PBX4 (ENSCHYG00000011654)	CILP2 (ENSCHYG00000012104)	YJEFN3 (ENSCHYG00000012151)
Cetacea	ANCESTRAL SPECIES	1	ENSGT00570000079564	ENSGT00390000018500.a	ENSGT01100000263552.g.b.a.a	ENSGT00940000161175	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.a	ENSGT00940000160371	ENSGT00940000162155	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510	ENSGT00940000154756.A.kd.a #15	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00940000162743	ENSGT00940000162181	ENSGT01030000234648.a.b.a.b	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.a.a
Blue whale	MODERN SPECIES	14	PGBD2 (ENSBMSG00010000226)	ENSBMSG00010000207	ENSBMSG00010000187	ENSBMSG00010000168	TRIM11 (ENSBMSG00010000144)	H2AC25 (ENSBMSG00010000131)	H2BC26 (ENSBMSG00010000114)	RNF187 (ENSBMSG00010000103)	ENSBMSG00010000077 ##15	ENSBMSG00010008882 ##15	ENSBMSG00010008859	IBA57 (ENSBMSG00010008847) #18	GJC2 (ENSBMSG00010008838) #19	GUK1 (ENSBMSG00010008805) #20	ENSBMSG00010008778 #21	C1orf35 (ENSBMSG00010008763) #22	ENSBMSG00010008747 #23	WNT3A (ENSBMSG00010008734) #24	WNT9A (ENSBMSG00010008726) #25	PRSS38 (ENSBMSG00010008714) #26	SNAP47 (ENSBMSG00010008703) #27	JMJD4 (ENSBMSG00010008694) #28	ZNF354B (ENSBMSG00010008689) #29	ZFP2 (ENSBMSG00010008682)	ZNF454 (ENSBMSG00010008671)	GRM6 (ENSBMSG00010008657)	ZNF879 (ENSBMSG00010008639)	ENSBMSG00010008598	ENSBMSG00010008587	ENSBMSG00010008570	RUFY1 (ENSBMSG00010008550)
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.a	ENSGT00940000160371	ENSGT00940000162155	ENSGT01100000263514.A.e.a.a.u.b	ENSGT00940000153092.a.a.c.b	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510	ENSGT00940000154756.A.ld ##15	ENSGT00550000074800.x	ENSGT00990000211596	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00940000162743	ENSGT00940000162181	ENSGT01030000234648.a.b.a.b	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.a.a
Sperm whale	MODERN SPECIES	11	ENSPCTG00005001917	TRIM11 (ENSPCTG00005001906)	ENSPCTG00005001893	H2AC25 (ENSPCTG00005001884)	H2BC26 (ENSPCTG00005001875)	RNF187 (ENSPCTG00005001868)	ENSPCTG00005001857 #15	ENSPCTG00005001845 ##15	ENSPCTG00005001837 ##15	ENSPCTG00005001826	ENSPCTG00005001819	IBA57 (ENSPCTG00005001814) #18	GJC2 (ENSPCTG00005001808) #19	GUK1 (ENSPCTG00005001793) #20	ENSPCTG00005001780 #21	C1orf35 (ENSPCTG00005001766) #22	ARF1 (ENSPCTG00005001753) #23	WNT3A (ENSPCTG00005001738) #24	WNT9A (ENSPCTG00005001728) #25	PRSS38 (ENSPCTG00005001709) #26	SNAP47 (ENSPCTG00005001687) #27	JMJD4 (ENSPCTG00005001672) #28	ZNF354B (ENSPCTG00005001661) #29	ZFP2 (ENSPCTG00005001642)	ZNF454 (ENSPCTG00005001630)	GRM6 (ENSPCTG00005001608)	ENSPCTG00005001587	ZNF879 (ENSPCTG00005001578)	ZNF354C (ENSPCTG00005001563)	ADAMTS2 (ENSPCTG00005001538)	ENSPCTG00005001527
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.a	ENSGT00940000160371	ENSGT00940000162155	ENSGT01100000263514.A.e.a.a.u.b	ENSGT00940000153092.a.a.c.b	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510	ENSGT00940000154756.A.ld ##15	ENSGT00550000074800.x	ENSGT00990000211596	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00940000162743	ENSGT00940000162181	ENSGT01030000234648.a.b.a.b	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.a.a
Dolphin	MODERN SPECIES	784														ENSTTRG00000014194 #20	ENSTTRG00000014191	C1orf35 (ENSTTRG00000014189) #22	ARF1 (ENSTTRG00000014186) #23
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.a	ENSGT00940000160371	ENSGT00940000162155	ENSGT01100000263514.A.e.a.a.u.b	ENSGT00940000153092.a.a.c.b	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510	ENSGT00940000154756.A.ld ##15	ENSGT00550000074800.x	ENSGT00990000211596	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00940000162743	ENSGT00940000162181	ENSGT01030000234648.a.b.a.b	ENSGT00940000155143.mb.b.a	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334
Vaquita	MODERN SPECIES	14	PGBD2 (ENSPSNG00000003638)	ENSPSNG00000003658	TRIM11 (ENSPSNG00000003681)	TRIM17 (ENSPSNG00000003706)	ENSPSNG00000003725	H2AC25 (ENSPSNG00000003735)	H2BC26 (ENSPSNG00000003742)	RNF187 (ENSPSNG00000003755)	ENSPSNG00000003780 ##15	ENSPSNG00000003825 ##15	ENSPSNG00000003866	IBA57 (ENSPSNG00000007499) #18	GJC2 (ENSPSNG00000007534) #19	GUK1 (ENSPSNG00000007583) #20	MRPL55 (ENSPSNG00000007632) #21	C1orf35 (ENSPSNG00000007656) #22	ENSPSNG00000007683 #23	WNT3A (ENSPSNG00000007708) #24	WNT9A (ENSPSNG00000007743) #25	PRSS38 (ENSPSNG00000007771) #26	SNAP47 (ENSPSNG00000007830) #27	JMJD4 (ENSPSNG00000007858) #28	ZNF354B (ENSPSNG00000007886) #29	ZFP2 (ENSPSNG00000007917)	ZNF454 (ENSPSNG00000007949)	GRM6 (ENSPSNG00000007996)	ENSPSNG00000008070	ZNF879 (ENSPSNG00000008106)	ADAMTS2 (ENSPSNG00000008224)	RUFY1 (ENSPSNG00000008611)	ENSPSNG00000008738
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00940000161175	ENSGT00940000162327	ENSGT01090000259995.a.a.b.a.a.a.a	ENSGT00940000160371	ENSGT00940000162155	ENSGT01100000263514.A.e.a.a.u.b	ENSGT00940000153092.a.a.c.b	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510	ENSGT00550000074800.x	ENSGT00990000211596	ENSGT00390000006465 #18	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b.rb.a #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28	ENSGT00940000162570 #29	ENSGT00940000162743	ENSGT00940000162181	ENSGT01030000234648.a.b.a.b	ENSGT00940000155143.mb.b.a	ENSGT00940000162816	ENSGT00940000162715	ENSGT00940000156647	ENSGT00940000158334
Narwhal	MODERN SPECIES	298	ZNF692 (ENSMMNG00015000156)	PGBD2 (ENSMMNG00015000125)	ENSMMNG00015000101	TRIM11 (ENSMMNG00015000075)	TRIM17 (ENSMMNG00015000054)	ENSMMNG00015000023	H2AC25 (ENSMMNG00015000012)	H2BC26 (ENSMMNG00015004531)	RNF187 (ENSMMNG00015004520)	ENSMMNG00015003699	ENSMMNG00015003686	IBA57 (ENSMMNG00015003669) #18	GJC2 (ENSMMNG00015003654) #19	GUK1 (ENSMMNG00015003608) #20	MRPL55 (ENSMMNG00015003572) #21	C1orf35 (ENSMMNG00015003552) #22	ENSMMNG00015003538 #23	WNT3A (ENSMMNG00015003522) #24	WNT9A (ENSMMNG00015003510) #25	PRSS38 (ENSMMNG00015003487) #26	ENSMMNG00015003473	SNAP47 (ENSMMNG00015003455) #27	JMJD4 (ENSMMNG00015003436) #28	ZNF354B (ENSMMNG00015003424) #29	ZFP2 (ENSMMNG00015003397)	ZNF454 (ENSMMNG00015003376)	GRM6 (ENSMMNG00015003345)	ENSMMNG00015003325	ZNF879 (ENSMMNG00015003310)	ZNF354C (ENSMMNG00015003290)	ENSMMNG00015003278
Beluga whale	MODERN SPECIES	93	ZNF692 (ENSDLEG00000010201)	PGBD2 (ENSDLEG00000010227)	ENSDLEG00000010241	TRIM11 (ENSDLEG00000010252)	TRIM17 (ENSDLEG00000010270)	ENSDLEG00000010292	H2AC25 (ENSDLEG00000010298)	H2BC26 (ENSDLEG00000010308)	RNF187 (ENSDLEG00000010320)	ENSDLEG00000011998	ENSDLEG00000012007	IBA57 (ENSDLEG00000012021) #18	GJC2 (ENSDLEG00000012033) #19	GUK1 (ENSDLEG00000012045) #20	MRPL55 (ENSDLEG00000012111) #21	ENSDLEG00000012123 #22	ENSDLEG00000012142	WNT3A (ENSDLEG00000012150) #24	WNT9A (ENSDLEG00000012170) #25	PRSS38 (ENSDLEG00000012200) #26	SNAP47 (ENSDLEG00000012222) #27	JMJD4 (ENSDLEG00000012232) #28	ZNF354B (ENSDLEG00000012249) #29	ZFP2 (ENSDLEG00000012263)	ZNF454 (ENSDLEG00000012270)	GRM6 (ENSDLEG00000012287)	ENSDLEG00000012347	ZNF879 (ENSDLEG00000012354)	ZNF354C (ENSDLEG00000012363)	ADAMTS2 (ENSDLEG00000012411)	ENSDLEG00000012767
Suina	ANCESTRAL SPECIES	56	ENSGT01100000263521.a.a.b.a.b.b	ENSGT00940000161175	ENSGT00940000163610	ENSGT00940000162327	ENSGT00390000006465 #18	ENSGT00940000154756.A #15	ENSGT00940000160371	ENSGT00940000162155	ENSGT00940000153092.a.a.c.b	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00390000009510	ENSGT00940000163997	ENSGT01090000260005.a.a.a.b.a.a.a #19	ENSGT00940000155815 #20	ENSGT00390000010309 #21	ENSGT00390000005590 #22	ENSGT00950000183080.a.b.a.b.b #23	ENSGT00940000160510 #24	ENSGT00940000159618 #25	ENSGT00940000154494.a.b #26	ENSGT00950000182843.b #27	ENSGT00940000159380 #28
Chacoan peccary	MODERN SPECIES	953	ZNF692 (ENSCWAG00000008595)	ENSCWAG00000008433	PGBD2 (ENSCWAG00000008376)	ENSCWAG00000020908	ENSCWAG00000020902	RNF187 (ENSCWAG00000020893)	H2BC26 (ENSCWAG00000020885)	H2AC25 (ENSCWAG00000020876)	TRIM17 (ENSCWAG00000020852)	TRIM11 (ENSCWAG00000020837)	OBSCN (ENSCWAG00000020667) #15	IBA57 (ENSCWAG00000020636) #18	GJC2 (ENSCWAG00000020627) #19	GUK1 (ENSCWAG00000020604) #20	MRPL55 (ENSCWAG00000020597) #21	C1orf35 (ENSCWAG00000020590) #22	ARF1 (ENSCWAG00000020582) #23	WNT3A (ENSCWAG00000020576) #24	WNT9A (ENSCWAG00000020570) #25	PRSS38 (ENSCWAG00000020558) #26	SNAP47 (ENSCWAG00000020551) #27	JMJD4 (ENSCWAG00000020541) #28	OR4A16 (ENSCWAG00000020533)	ENSCWAG00000020519	ENSCWAG00000020508	SHANK3 (ENSCWAG00000020472)	ARSA (ENSCWAG00000020433)	MAPK8IP2 (ENSCWAG00000020407)	CHKB (ENSCWAG00000020388)	CPT1B (ENSCWAG00000020353)	SYCE3 (ENSCWAG00000020334)
Pig	MODERN SPECIES	10	ENSSSCG00000013976	PGBD2 (ENSSSCG00000033305)	ENSSSCG00000039611	ENSSSCG00000013980	ENSSSCG00000026598	ENSSSCG00000059454	TRIM11 (ENSSSCG00000035985)	TRIM17 (ENSSSCG00000014000)	H2AC25 (ENSSSCG00000047900)	H2BC26 (ENSSSCG00000061158)	RNF187 (ENSSSCG00000032994)	OBSCN (ENSSSCG00000034569) #15	GJC2 (ENSSSCG00000013989) #19	ENSSSCG00000013990 #20	MRPL55 (ENSSSCG00000029050) #21	C1orf35 (ENSSSCG00000013991) #22	ARF1 (ENSSSCG00000013992) #23	WNT3A (ENSSSCG00000029870) #24	WNT9A (ENSSSCG00000024671) #25	ENSSSCG00000048546	ENSSSCG00000057198	SNAP47 (ENSSSCG00000013984) #27	JMJD4 (ENSSSCG00000013983) #28	ENSSSCG00000036276	ENSSSCG00000014467	ENSSSCG00000040165	ENSSSCG00000032924	ENSSSCG00000042508	ENSSSCG00000038176	ENSSSCG00000043165	WEE1 (ENSSSCG00000013411)