Murinae	ANCESTRAL SPECIES	19	ENSGT00940000161634 #9	ENSGT00940000154432.m.a.c	ENSGT00940000163805 #10	ENSGT00940000163003 #11	ENSGT00940000160506 #12	ENSGT01030000234606.a.b.d #13	ENSGT00940000157783 #14	ENSGT00390000011694 #15	ENSGT00960000186612.A.q.e ##16	ENSGT00960000186612.A.r #16	ENSGT00960000186612.A.q.f #17	ENSGT00950000182890.A.b #18	ENSGT00940000162814 #19	ENSGT00950000182832.A #20	ENSGT00940000160527 #21	ENSGT00940000160859 #22	ENSGT00940000157947 #23	ENSGT00940000162092 #24	ENSGT00940000164133 #25	ENSGT00940000163974 #26	ENSGT00390000010806 #27	ENSGT00940000163014 #28	ENSGT00940000162352 #29	ENSGT00940000162111 #30	ENSGT00940000162872 #31	ENSGT00940000163034 #32	ENSGT00940000154249.b.m #33	ENSGT00390000018040 #34	ENSGT00940000161820 #35	ENSGT00940000154249.b.n ##33	ENSGT00960000186612.B.a.b.a.a.b.d ##16
Mus	ANCESTRAL SPECIES		ENSGT00940000161634 #9	ENSGT00940000154432.m.a.c	ENSGT00940000163805 #10	ENSGT00940000163003 #11	ENSGT00940000160506 #12	ENSGT01030000234606.a.b.d #13	ENSGT00940000157783 #14	ENSGT00390000011694 #15	ENSGT00960000186612.A.q.e ##16	ENSGT00960000186612.A.r #16	ENSGT00960000186612.A.q.f #17	ENSGT00950000182890.A.b #18	ENSGT00940000162814 #19	ENSGT00950000182832.A #20	ENSGT00940000160527 #21	ENSGT00940000160859 #22	ENSGT00940000157947 #23	ENSGT00940000162092 #24	ENSGT00940000164133 #25	ENSGT00940000163974 #26	ENSGT00390000010806 #27	ENSGT00940000163014 #28	ENSGT00940000162352 #29	ENSGT00940000162111.c #30	ENSGT00940000162872 #31	ENSGT00940000163034 #32	ENSGT00940000154249.b.m.a #33	ENSGT00940000154249.b.m.b ##33	ENSGT00390000018040 #34	ENSGT00940000161820 #35	ENSGT00940000154249.b.n ##33
Shrew mouse	MODERN SPECIES	10	MGP_PahariEiJ_G0021074 #7	MGP_PahariEiJ_G0021073 #8	Crx (MGP_PahariEiJ_G0021072) #9	MGP_PahariEiJ_G0021071 #10	Bsph1 (MGP_PahariEiJ_G0021070) #11	Cabp5 (MGP_PahariEiJ_G0021069) #12	Pla2g4c (MGP_PahariEiJ_G0021068) #13	Lig1 (MGP_PahariEiJ_G0021067) #14	Zswim9 (MGP_PahariEiJ_G0021066) #15	Vmn1r87 (MGP_PahariEiJ_G0021065) #16	Vmn1r85 (MGP_PahariEiJ_G0021064) #17	Mzf1 (MGP_PahariEiJ_G0021063) #18	Ube2m (MGP_PahariEiJ_G0021062) #19	Chmp2a (MGP_PahariEiJ_G0021061) #20	Trim28 (MGP_PahariEiJ_G0021060) #21	Zbtb45 (MGP_PahariEiJ_G0021059) #22	MGP_PahariEiJ_G0021058 #23	MGP_PahariEiJ_G0021057 #24	Zfp324 (MGP_PahariEiJ_G0021056) #25	Rnf225 (MGP_PahariEiJ_G0021055) #26	Rps5 (MGP_PahariEiJ_G0021054) #27	Zscan22 (MGP_PahariEiJ_G0021053) #28	Zfp128 (MGP_PahariEiJ_G0021052) #29	Zfp110 (MGP_PahariEiJ_G0021051) #30	Zfp329 (MGP_PahariEiJ_G0021050) #31	MGP_PahariEiJ_G0021049 #32	MGP_PahariEiJ_G0021048 #33	2900092C05Rik (MGP_PahariEiJ_G0021047) #34	Zfp606 (MGP_PahariEiJ_G0021046) #35	MGP_PahariEiJ_G0021045 #36	Zfp773 (MGP_PahariEiJ_G0021044) #37
Mus_A	ANCESTRAL SPECIES	1	ENSGT00390000000605.B.a	ENSGT00940000154432.m.a.c.c	ENSGT00940000163805 #10	ENSGT00940000163003 #11	ENSGT00940000160506 #12	ENSGT01030000234606.a.b.d #13	ENSGT00940000157783 #14	ENSGT00390000011694 #15	ENSGT00960000186612.A.q.e ##16	ENSGT00960000186612.A.r #16	ENSGT00960000186612.A.q.f #17	ENSGT00950000182890.A.b #18	ENSGT00940000162814 #19	ENSGT00950000182832.A #20	ENSGT00940000160527 #21	ENSGT00940000160859 #22	ENSGT00940000157947 #23	ENSGT00940000162092 #24	ENSGT00940000164133 #25	ENSGT00940000163974 #26	ENSGT00390000010806 #27	ENSGT00940000163014 #28	ENSGT00940000162352 #29	ENSGT00940000162111.c #30	ENSGT00940000162872 #31	ENSGT00940000163034 #32	ENSGT00940000154249.b.m.a #33	ENSGT00940000154249.b.m.b.b ##33	ENSGT00390000018040 #34	ENSGT00940000161820 #35	ENSGT00940000154693.b
Mus_B	ANCESTRAL SPECIES		ENSGT00940000163805 #10	ENSGT00940000163003 #11	ENSGT00940000160506 #12	ENSGT01030000234606.a.b.d #13	ENSGT00940000157783 #14	ENSGT00390000011694 #15	ENSGT00960000186612.A.q.e.d ##16	ENSGT00960000186612.A.q.e.c.b ##16	ENSGT00960000186612.A.r #16	ENSGT00960000186612.A.q.e.c.a ##16	ENSGT00960000186612.A.q.f #17	ENSGT00950000182890.A.b #18	ENSGT00940000162814 #19	ENSGT00950000182832.A #20	ENSGT00940000160527 #21	ENSGT00940000160859 #22	ENSGT00940000157947 #23	ENSGT00940000162092 #24	ENSGT00940000164133 #25	ENSGT00940000163974 #26	ENSGT00390000010806 #27	ENSGT00940000163014 #28	ENSGT00940000162352 #29	ENSGT00940000162111.c #30	ENSGT00940000162872 #31	ENSGT00940000163034 #32	ENSGT00940000154249.b.m.a #33	ENSGT00940000154249.b.m.b.b ##33	ENSGT00390000018040 #34	ENSGT00940000161820 #35	ENSGT00940000154249.b.n ##33
Mus_C	ANCESTRAL SPECIES	15	ENSGT00940000163805 #10	ENSGT00940000163003 #11	ENSGT00940000160506 #12	ENSGT01030000234606.a.b.d #13	ENSGT00940000157783 #14	ENSGT00390000011694 #15	ENSGT00960000186612.A.q.e.d ##16	ENSGT00960000186612.A.q.e.c.b ##16	ENSGT00960000186612.A.r #16	ENSGT00960000186612.A.q.e.c.a ##16	ENSGT00960000186612.A.q.f #17	ENSGT00950000182890.A.b #18	ENSGT00940000162814 #19	ENSGT00950000182832.A #20	ENSGT00940000160527 #21	ENSGT00940000160859 #22	ENSGT00940000157947 #23	ENSGT00940000162092 #24	ENSGT00940000164133 #25	ENSGT00940000163974 #26	ENSGT00390000010806 #27	ENSGT00940000163014 #28	ENSGT00940000162352 #29	ENSGT00940000162111.c #30	ENSGT00940000162872 #31	ENSGT00940000163034 #32	ENSGT00390000018040 #34	ENSGT00940000161820 #35	ENSGT00940000154249.b.n ##33	ENSGT00940000154693.b	ENSGT00960000186612.B.a.b.a.b.b.e.a.a ##16
spretus	MODERN SPECIES	16	MGP_SPRETEiJ_G0030288	Bsph2 (MGP_SPRETEiJ_G0030287) #10	Bsph1 (MGP_SPRETEiJ_G0030286) #11	Cabp5 (MGP_SPRETEiJ_G0030285) #12	Pla2g4c (MGP_SPRETEiJ_G0030284) #13	Lig1 (MGP_SPRETEiJ_G0030283) #14	Zswim9 (MGP_SPRETEiJ_G0030282) #15	Vmn1r88 (MGP_SPRETEiJ_G0030281) ##16	Vmn1r87 (MGP_SPRETEiJ_G0030280) #16	MGP_SPRETEiJ_G0030279 ##16	Vmn1r85 (MGP_SPRETEiJ_G0030278) #17	Mzf1 (MGP_SPRETEiJ_G0030277) #18	Ube2m (MGP_SPRETEiJ_G0030276) #19	Chmp2a (MGP_SPRETEiJ_G0030275) #20	Trim28 (MGP_SPRETEiJ_G0030274) #21	Zbtb45 (MGP_SPRETEiJ_G0030273) #22	Slc27a5 (MGP_SPRETEiJ_G0030272) #23	Zfp446 (MGP_SPRETEiJ_G0030271) #24	Zfp324 (MGP_SPRETEiJ_G0030270) #25	Rnf225 (MGP_SPRETEiJ_G0030269) #26	Rps5 (MGP_SPRETEiJ_G0030268) #27	Zscan22 (MGP_SPRETEiJ_G0030267) #28	Zfp128 (MGP_SPRETEiJ_G0030266) #29	Zfp110 (MGP_SPRETEiJ_G0030265) #30	Zfp329 (MGP_SPRETEiJ_G0030264) #31	Zscan18 (MGP_SPRETEiJ_G0030263) #32	2900092C05Rik (MGP_SPRETEiJ_G0030262) #34	Zfp606 (MGP_SPRETEiJ_G0030261) #35	Zfp551 (MGP_SPRETEiJ_G0030260)	Vmn1r84 (MGP_SPRETEiJ_G0030259) ##16	Vmn1r83 (MGP_SPRETEiJ_G0030258) ##16
Steppe mouse	MODERN SPECIES	373																Zbtb45 (ENSMSIG00000001383) #22
Mouse	MODERN SPECIES	16	Sult2a5 (ENSMUSG00000078799)	Bsph2 (ENSMUSG00000078800) #10	Bsph1 (ENSMUSG00000074378) #11	Cabp5 (ENSMUSG00000005649) #12	Pla2g4c (ENSMUSG00000033847) #13	Lig1 (ENSMUSG00000056394) #14	Zswim9 (ENSMUSG00000070814) #15	Vmn1r89 (ENSMUSG00000095629) ##16	Vmn1r88 (ENSMUSG00000117853) ##16	Vmn1r87 (ENSMUSG00000070815) #16	Vmn1r86 (ENSMUSG00000070816) ##16	Vmn1r85 (ENSMUSG00000070817) #17	Mzf1 (ENSMUSG00000030380) #18	Ube2m (ENSMUSG00000005575) #19	Chmp2a (ENSMUSG00000033916) #20	Zbtb45 (ENSMUSG00000049600) #22	Trim28 (ENSMUSG00000005566) #21	Slc27a5 (ENSMUSG00000030382) #23	Zfp446 (ENSMUSG00000033961) #24	Zfp324 (ENSMUSG00000004500) #25	Rnf225 (ENSMUSG00000033967) #26	Rps5 (ENSMUSG00000012848) #27	Zscan22 (ENSMUSG00000054715) #28	Zfp128 (ENSMUSG00000060397) #29	Zfp110 (ENSMUSG00000058638) #30	Zfp329 (ENSMUSG00000057894) #31	Zscan18 (ENSMUSG00000070822) #32	Vmn2r56 (ENSMUSG00000090762) #33	Vmn2r55 (ENSMUSG00000091045) ##33	Vmn2r54 (ENSMUSG00000096593) ##33	Vmn2r53 (ENSMUSG00000096002) ##33
Ryukyu mouse	MODERN SPECIES	16	Sult2a8 (MGP_CAROLIEiJ_G0029212)	Obox8 (MGP_CAROLIEiJ_G0029211)	MGP_CAROLIEiJ_G0029210	Bsph2 (MGP_CAROLIEiJ_G0029209) #10	Bsph1 (MGP_CAROLIEiJ_G0029208) #11	Cabp5 (MGP_CAROLIEiJ_G0029207) #12	Pla2g4c (MGP_CAROLIEiJ_G0029206) #13	Lig1 (MGP_CAROLIEiJ_G0029205) #14	Zswim9 (MGP_CAROLIEiJ_G0029204) #15	Vmn1r87 (MGP_CAROLIEiJ_G0029203) #16	Vmn1r85 (MGP_CAROLIEiJ_G0029202) #17	Mzf1 (MGP_CAROLIEiJ_G0029201) #18	Ube2m (MGP_CAROLIEiJ_G0029200) #19	Chmp2a (MGP_CAROLIEiJ_G0029199) #20	Trim28 (MGP_CAROLIEiJ_G0029198) #21	Zbtb45 (MGP_CAROLIEiJ_G0029197) #22	Slc27a5 (MGP_CAROLIEiJ_G0029196) #23	MGP_CAROLIEiJ_G0029195 #24	Zfp324 (MGP_CAROLIEiJ_G0029194) #25	Rnf225 (MGP_CAROLIEiJ_G0029193) #26	Rps5 (MGP_CAROLIEiJ_G0029192) #27	Zscan22 (MGP_CAROLIEiJ_G0029191) #28	Zfp128 (MGP_CAROLIEiJ_G0029190) #29	Zfp110 (MGP_CAROLIEiJ_G0029189) #30	Zfp329 (MGP_CAROLIEiJ_G0029188) #31	Zscan18 (MGP_CAROLIEiJ_G0029187) #32	MGP_CAROLIEiJ_G0029186 ##33	2900092C05Rik (MGP_CAROLIEiJ_G0029185) #34	Zfp606 (MGP_CAROLIEiJ_G0029184) #35	Zfp551 (MGP_CAROLIEiJ_G0029183)	Vmn1r84 (MGP_CAROLIEiJ_G0029182) ##16
Rat	MODERN SPECIES		Vom1r61 (ENSRNOG00000014181) #17	Vom1r60 (ENSRNOG00000065183) ##16	ENSRNOG00000065806 ##16	Vom1r59 (ENSRNOG00000030886) ##16	Vom1r57 (ENSRNOG00000057670) #16	Vom1r56 (ENSRNOG00000070690) ##16	LOC120097724 (ENSRNOG00000064555) ##16	LOC100365062 (ENSRNOG00000060288)	ENSRNOG00000063282 ##16	Vom1r55 (ENSRNOG00000049810) ##16	Mzf1 (ENSRNOG00000027550) #18	ENSRNOG00000065335	Ube2m (ENSRNOG00000027514) #19	Chmp2a (ENSRNOG00000043328) #20	Trim28 (ENSRNOG00000027487) #21	Zbtb45 (ENSRNOG00000027459) #22	Slc27a5 (ENSRNOG00000019626) #23	Zfp446 (ENSRNOG00000060429) #24	Zfp324 (ENSRNOG00000027436) #25	ENSRNOG00000063212	Rnf225 (ENSRNOG00000038445) #26	Rps5 (ENSRNOG00000019453) #27	Zscan22 (ENSRNOG00000031113) #28	Znf8 (ENSRNOG00000031459) #29	Zfp110 (ENSRNOG00000031328) #30	Zfp329 (ENSRNOG00000019376) #31	ENSRNOG00000068712	Zscan18 (ENSRNOG00000026861) #32	Vom2r35 (ENSRNOG00000050831) #33	Vom2r33 (ENSRNOG00000064978) #33	AABR07002093.2 (ENSRNOG00000048663) #33