Euarchontoglires_A ANCESTRAL SPECIES 26 ENSGT01100000263552.g.b.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000165288 ENSGT00940000163047 ENSGT00940000163291 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT01100000263562.b.a.a.c.a ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00980000199879 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 Glires ANCESTRAL SPECIES 27 ENSGT01100000263552.g.b.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000165288 ENSGT00940000163047 ENSGT00940000163291 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT01100000263562.b.a.a.c.a ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00980000199879 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 Rodentia ANCESTRAL SPECIES 25 ENSGT00940000154740.a.b.b #21 ENSGT00940000163935 ENSGT01100000263552.g.b.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000163047 ENSGT00940000163291 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT01100000263562.b.a.a.c.a ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00980000199879 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000153104.e.a.a.a.a.a Rodentia_B ANCESTRAL SPECIES 52 ENSGT00950000182890.A.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000153104.e.a.a.a.a.a ENSGT00940000154249.b ENSGT00940000161820 ENSGT00390000018040 ENSGT00960000186612.B.a.b.a.b.b Myomorpha ANCESTRAL SPECIES 66 ENSGT00950000182890.A.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000153104.e.a.a.a.a.a ENSGT00940000154249.b ENSGT00940000161820 ENSGT00390000018040 ENSGT00960000186612.B.a.b.a.b.b.e.a Muroidea ANCESTRAL SPECIES 86 ENSGT00950000182890.A.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000153104.e.a.a.a.a.a ENSGT00940000154249.b ENSGT00940000161820 ENSGT00390000018040 ENSGT00960000186612.B.a.b.a.b.b.e.a Muroidea_A ANCESTRAL SPECIES 20 ENSGT00940000161634 ENSGT00940000154432.m.a.c #14 ENSGT00940000163805 #15 ENSGT00940000163003 #16 ENSGT00940000160506 #17 ENSGT01030000234606.a.b.d #18 ENSGT00940000157783 #19 ENSGT00390000011694 #20 ENSGT00960000186612.A.q.e ENSGT00960000186612.A.r ENSGT00960000186612.A.q.f ENSGT00950000182890.A.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000154249.b ENSGT00940000161820 ENSGT00390000018040 ENSGT00960000186612.B.a.b.a.b.b.e.a.a Cricetidae ANCESTRAL SPECIES 35 ENSGT00940000154432.m.a.c.a #14 ENSGT00940000163805 #15 ENSGT00940000163003 #16 ENSGT00940000160506 #17 ENSGT01030000234606.a.b.d #18 ENSGT00940000157783 #19 ENSGT00390000011694 #20 ENSGT00960000186612.A.q.e ENSGT00960000186612.A.r ENSGT00960000186612.A.q.f ENSGT00950000182890.A.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000154249.b ENSGT00940000161820 ENSGT00390000018040 ENSGT00960000186612.B.a.b.a.b.b.e.a.a Cricetinae ANCESTRAL SPECIES 54 ENSGT00940000154432.m.a.c.a #14 ENSGT00940000163805 #15 ENSGT00940000163003 #16 ENSGT00940000160506 #17 ENSGT01030000234606.a.b.d #18 ENSGT00940000157783 #19 ENSGT00390000011694 #20 ENSGT00960000186612.A.r ENSGT00960000186612.A.q.e ENSGT00960000186612.A.q.f ENSGT00950000182890.A.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000154249.b ENSGT00940000161820 ENSGT00390000018040 Golden Hamster MODERN SPECIES 854 ENSMAUG00000000964 #14 Bsph2 (ENSMAUG00000018242) #15 Bsph1 (ENSMAUG00000000945) #16 Cabp5 (ENSMAUG00000000389) #17 Pla2g4c (ENSMAUG00000017093) #18 Lig1 (ENSMAUG00000012577) #19 Zswim9 (ENSMAUG00000012192) #20 ENSMAUG00000013431 #21 Zbtb45 (ENSMAUG00000012496) #22 Slc27a5 (ENSMAUG00000011174) #23 Zfp446 (ENSMAUG00000010544) #24 Zfp324 (ENSMAUG00000012071) #25 Rnf225 (ENSMAUG00000011183) #26 Rps5 (ENSMAUG00000010731) #27 Zscan22 (ENSMAUG00000009841) #28 Zfp128 (ENSMAUG00000009738) #29 ENSMAUG00000008927 #30 Zfp329 (ENSMAUG00000008851) #31 Zscan18 (ENSMAUG00000009174) #32 Chinese hamster chok1gshd MODERN SPECIES 330 Bsph2 (ENSCGRG00001012200) #15 ENSCGRG00001011843 Bsph1 (ENSCGRG00001011408) #16 Cabp5 (ENSCGRG00001010975) #17 Pla2g4c (ENSCGRG00001010392) #18 Lig1 (ENSCGRG00001009260) #19 Zswim9 (ENSCGRG00001008160) #20 Vmn1r87 (ENSCGRG00001012800) ENSCGRG00001012816 ENSCGRG00001007385 Vmn1r85 (ENSCGRG00001012759) Mzf1 (ENSCGRG00001016812) Ube2m (ENSCGRG00001016275) Chmp2a (ENSCGRG00001016140) Trim28 (ENSCGRG00001015972) Zbtb45 (ENSCGRG00001015644) #22 Slc27a5 (ENSCGRG00001014649) #23 Zfp446 (ENSCGRG00001014374) #24 Zfp324 (ENSCGRG00001014364) #25 Rps5 (ENSCGRG00001014197) #27 Zscan22 (ENSCGRG00001013455) #28 Zfp128 (ENSCGRG00001013352) #29 ENSCGRG00001013253 #30 Zfp329 (ENSCGRG00001013107) #31 Zscan18 (ENSCGRG00001012789) #32 ENSCGRG00001012487 ENSCGRG00001012437 Zfp606 (ENSCGRG00001005873) 2900092C05Rik (ENSCGRG00001005367) Cricetidae_B ANCESTRAL SPECIES 63 ENSGT00940000154432.m.a.c.a #14 ENSGT00940000163805 #15 ENSGT00940000163003 #16 ENSGT00940000160506 #17 ENSGT01030000234606.a.b.d #18 ENSGT00940000157783 #19 ENSGT00390000011694 #20 ENSGT00960000186612.A.r ENSGT00960000186612.A.q.f ENSGT00950000182890.A.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000154249.b ENSGT00940000161820 ENSGT00390000018040 ENSGT00960000186612.B.a.b.a.b.b.e.a.a Prairie vole MODERN SPECIES 354 Dhx34 (ENSMOCG00000016843) Meis3 (ENSMOCG00000008970) Slc8a2 (ENSMOCG00000005717) ENSMOCG00000013711 Napa (ENSMOCG00000006244) Zfp541 (ENSMOCG00000021811) Bicra (ENSMOCG00000019348) Ehd2 (ENSMOCG00000007010) Nop53 (ENSMOCG00000008367) ENSMOCG00000017884 #27 Crx (ENSMOCG00000020933) Mzf1 (ENSMOCG00000011386) Ube2m (ENSMOCG00000016295) Chmp2a (ENSMOCG00000003404) Trim28 (ENSMOCG00000015909) Zbtb45 (ENSMOCG00000001388) #22 Slc27a5 (ENSMOCG00000004298) #23 ENSMOCG00000018903 #24 Zfp324 (ENSMOCG00000019412) #25 Rnf225 (ENSMOCG00000002634) #26 Rps5 (ENSMOCG00000022992) #27 Zscan22 (ENSMOCG00000005599) #28 Zfp128 (ENSMOCG00000009285) #29 ENSMOCG00000018600 Zfp329 (ENSMOCG00000007161) #31 Lypd5 (ENSMOCG00000020197) Kcnn4 (ENSMOCG00000004304) Smg9 (ENSMOCG00000014343) Irgc1 (ENSMOCG00000012592) Cadm4 (ENSMOCG00000016755) ENSMOCG00000012553 Northern American deer mouse MODERN SPECIES ENSPEMG00000026163 ENSPEMG00000014336 ENSPEMG00000030621 Bsph1 (ENSPEMG00000004881) #16 Cabp5 (ENSPEMG00000015004) #17 Pla2g4c (ENSPEMG00000007988) #18 Lig1 (ENSPEMG00000013078) #19 Zswim9 (ENSPEMG00000013130) #20 ENSPEMG00000029740 ENSPEMG00000024467 ENSPEMG00000028720 Mzf1 (ENSPEMG00000008105) Ube2m (ENSPEMG00000000675) Chmp2a (ENSPEMG00000015612) Trim28 (ENSPEMG00000010654) Zbtb45 (ENSPEMG00000011391) #22 Slc27a5 (ENSPEMG00000016124) #23 Zfp446 (ENSPEMG00000018419) #24 Zfp324 (ENSPEMG00000019095) #25 Rps5 (ENSPEMG00000015167) #27 Zscan22 (ENSPEMG00000012342) #28 Zfp128 (ENSPEMG00000007396) #29 ENSPEMG00000015626 #30 Zfp329 (ENSPEMG00000031048) #31 ENSPEMG00000001826 Zscan18 (ENSPEMG00000015293) #32 ENSPEMG00000030681 ENSPEMG00000024758 ENSPEMG00000024524 ENSPEMG00000030163 Zfp606 (ENSPEMG00000008969) Murinae ANCESTRAL SPECIES 19 ENSGT00940000161634 ENSGT00940000154432.m.a.c #14 ENSGT00940000163805 #15 ENSGT00940000163003 #16 ENSGT00940000160506 #17 ENSGT01030000234606.a.b.d #18 ENSGT00940000157783 #19 ENSGT00390000011694 #20 ENSGT00960000186612.A.q.e ENSGT00960000186612.A.r ENSGT00960000186612.A.q.f ENSGT00950000182890.A.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000154249.b.m ENSGT00390000018040 ENSGT00940000161820 ENSGT00940000154249.b.n ENSGT00960000186612.B.a.b.a.a.b.d Mus ANCESTRAL SPECIES ENSGT00940000161634 ENSGT00940000154432.m.a.c #14 ENSGT00940000163805 #15 ENSGT00940000163003 #16 ENSGT00940000160506 #17 ENSGT01030000234606.a.b.d #18 ENSGT00940000157783 #19 ENSGT00390000011694 #20 ENSGT00960000186612.A.q.e ENSGT00960000186612.A.r ENSGT00960000186612.A.q.f ENSGT00950000182890.A.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00940000162111.c #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000154249.b.m.a ENSGT00940000154249.b.m.b ENSGT00390000018040 ENSGT00940000161820 ENSGT00940000154249.b.n Mus_A ANCESTRAL SPECIES 1 ENSGT00390000000605.B.a ENSGT00940000154432.m.a.c.c #14 ENSGT00940000163805 #15 ENSGT00940000163003 #16 ENSGT00940000160506 #17 ENSGT01030000234606.a.b.d #18 ENSGT00940000157783 #19 ENSGT00390000011694 #20 ENSGT00960000186612.A.q.e ENSGT00960000186612.A.r ENSGT00960000186612.A.q.f ENSGT00950000182890.A.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00940000162111.c #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000154249.b.m.a ENSGT00940000154249.b.m.b.b ENSGT00390000018040 ENSGT00940000161820 ENSGT00940000154693.b Mus_B ANCESTRAL SPECIES ENSGT00940000163805 #15 ENSGT00940000163003 #16 ENSGT00940000160506 #17 ENSGT01030000234606.a.b.d #18 ENSGT00940000157783 #19 ENSGT00390000011694 #20 ENSGT00960000186612.A.q.e.d ENSGT00960000186612.A.q.e.c.b ENSGT00960000186612.A.r ENSGT00960000186612.A.q.e.c.a ENSGT00960000186612.A.q.f ENSGT00950000182890.A.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00940000162111.c #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000154249.b.m.a ENSGT00940000154249.b.m.b.b ENSGT00390000018040 ENSGT00940000161820 ENSGT00940000154249.b.n Mus_C ANCESTRAL SPECIES 15 ENSGT00940000163805 #15 ENSGT00940000163003 #16 ENSGT00940000160506 #17 ENSGT01030000234606.a.b.d #18 ENSGT00940000157783 #19 ENSGT00390000011694 #20 ENSGT00960000186612.A.q.e.d ENSGT00960000186612.A.q.e.c.b ENSGT00960000186612.A.r ENSGT00960000186612.A.q.e.c.a ENSGT00960000186612.A.q.f ENSGT00950000182890.A.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00940000162111.c #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00390000018040 ENSGT00940000161820 ENSGT00940000154249.b.n ENSGT00940000154693.b ENSGT00960000186612.B.a.b.a.b.b.e.a.a spretus MODERN SPECIES 16 MGP_SPRETEiJ_G0030288 #14 Bsph2 (MGP_SPRETEiJ_G0030287) #15 Bsph1 (MGP_SPRETEiJ_G0030286) #16 Cabp5 (MGP_SPRETEiJ_G0030285) #17 Pla2g4c (MGP_SPRETEiJ_G0030284) #18 Lig1 (MGP_SPRETEiJ_G0030283) #19 Zswim9 (MGP_SPRETEiJ_G0030282) #20 Vmn1r88 (MGP_SPRETEiJ_G0030281) Vmn1r87 (MGP_SPRETEiJ_G0030280) MGP_SPRETEiJ_G0030279 Vmn1r85 (MGP_SPRETEiJ_G0030278) Mzf1 (MGP_SPRETEiJ_G0030277) Ube2m (MGP_SPRETEiJ_G0030276) Chmp2a (MGP_SPRETEiJ_G0030275) Trim28 (MGP_SPRETEiJ_G0030274) Zbtb45 (MGP_SPRETEiJ_G0030273) #22 Slc27a5 (MGP_SPRETEiJ_G0030272) #23 Zfp446 (MGP_SPRETEiJ_G0030271) #24 Zfp324 (MGP_SPRETEiJ_G0030270) #25 Rnf225 (MGP_SPRETEiJ_G0030269) #26 Rps5 (MGP_SPRETEiJ_G0030268) #27 Zscan22 (MGP_SPRETEiJ_G0030267) #28 Zfp128 (MGP_SPRETEiJ_G0030266) #29 Zfp110 (MGP_SPRETEiJ_G0030265) #30 Zfp329 (MGP_SPRETEiJ_G0030264) #31 Zscan18 (MGP_SPRETEiJ_G0030263) #32 2900092C05Rik (MGP_SPRETEiJ_G0030262) Zfp606 (MGP_SPRETEiJ_G0030261) Zfp551 (MGP_SPRETEiJ_G0030260) Vmn1r84 (MGP_SPRETEiJ_G0030259) Vmn1r83 (MGP_SPRETEiJ_G0030258) Steppe mouse MODERN SPECIES 373 Zbtb45 (ENSMSIG00000001383) #22 Mouse MODERN SPECIES 16 Sult2a5 (ENSMUSG00000078799) #14 Bsph2 (ENSMUSG00000078800) #15 Bsph1 (ENSMUSG00000074378) #16 Cabp5 (ENSMUSG00000005649) #17 Pla2g4c (ENSMUSG00000033847) #18 Lig1 (ENSMUSG00000056394) #19 Zswim9 (ENSMUSG00000070814) #20 Vmn1r89 (ENSMUSG00000095629) Vmn1r88 (ENSMUSG00000117853) Vmn1r87 (ENSMUSG00000070815) Vmn1r86 (ENSMUSG00000070816) Vmn1r85 (ENSMUSG00000070817) Mzf1 (ENSMUSG00000030380) Ube2m (ENSMUSG00000005575) Chmp2a (ENSMUSG00000033916) Zbtb45 (ENSMUSG00000049600) #22 Trim28 (ENSMUSG00000005566) Slc27a5 (ENSMUSG00000030382) #23 Zfp446 (ENSMUSG00000033961) #24 Zfp324 (ENSMUSG00000004500) #25 Rnf225 (ENSMUSG00000033967) #26 Rps5 (ENSMUSG00000012848) #27 Zscan22 (ENSMUSG00000054715) #28 Zfp128 (ENSMUSG00000060397) #29 Zfp110 (ENSMUSG00000058638) #30 Zfp329 (ENSMUSG00000057894) #31 Zscan18 (ENSMUSG00000070822) #32 Vmn2r56 (ENSMUSG00000090762) Vmn2r55 (ENSMUSG00000091045) Vmn2r54 (ENSMUSG00000096593) Vmn2r53 (ENSMUSG00000096002) Ryukyu mouse MODERN SPECIES 16 Sult2a8 (MGP_CAROLIEiJ_G0029212) ##14 Obox8 (MGP_CAROLIEiJ_G0029211) MGP_CAROLIEiJ_G0029210 #14 Bsph2 (MGP_CAROLIEiJ_G0029209) #15 Bsph1 (MGP_CAROLIEiJ_G0029208) #16 Cabp5 (MGP_CAROLIEiJ_G0029207) #17 Pla2g4c (MGP_CAROLIEiJ_G0029206) #18 Lig1 (MGP_CAROLIEiJ_G0029205) #19 Zswim9 (MGP_CAROLIEiJ_G0029204) #20 Vmn1r87 (MGP_CAROLIEiJ_G0029203) Vmn1r85 (MGP_CAROLIEiJ_G0029202) Mzf1 (MGP_CAROLIEiJ_G0029201) Ube2m (MGP_CAROLIEiJ_G0029200) Chmp2a (MGP_CAROLIEiJ_G0029199) Trim28 (MGP_CAROLIEiJ_G0029198) Zbtb45 (MGP_CAROLIEiJ_G0029197) #22 Slc27a5 (MGP_CAROLIEiJ_G0029196) #23 MGP_CAROLIEiJ_G0029195 #24 Zfp324 (MGP_CAROLIEiJ_G0029194) #25 Rnf225 (MGP_CAROLIEiJ_G0029193) #26 Rps5 (MGP_CAROLIEiJ_G0029192) #27 Zscan22 (MGP_CAROLIEiJ_G0029191) #28 Zfp128 (MGP_CAROLIEiJ_G0029190) #29 Zfp110 (MGP_CAROLIEiJ_G0029189) #30 Zfp329 (MGP_CAROLIEiJ_G0029188) #31 Zscan18 (MGP_CAROLIEiJ_G0029187) #32 MGP_CAROLIEiJ_G0029186 2900092C05Rik (MGP_CAROLIEiJ_G0029185) Zfp606 (MGP_CAROLIEiJ_G0029184) Zfp551 (MGP_CAROLIEiJ_G0029183) Vmn1r84 (MGP_CAROLIEiJ_G0029182) Shrew mouse MODERN SPECIES 10 MGP_PahariEiJ_G0021074 MGP_PahariEiJ_G0021073 Crx (MGP_PahariEiJ_G0021072) MGP_PahariEiJ_G0021071 #15 Bsph1 (MGP_PahariEiJ_G0021070) #16 Cabp5 (MGP_PahariEiJ_G0021069) #17 Pla2g4c (MGP_PahariEiJ_G0021068) #18 Lig1 (MGP_PahariEiJ_G0021067) #19 Zswim9 (MGP_PahariEiJ_G0021066) #20 Vmn1r87 (MGP_PahariEiJ_G0021065) Vmn1r85 (MGP_PahariEiJ_G0021064) Mzf1 (MGP_PahariEiJ_G0021063) Ube2m (MGP_PahariEiJ_G0021062) Chmp2a (MGP_PahariEiJ_G0021061) Trim28 (MGP_PahariEiJ_G0021060) Zbtb45 (MGP_PahariEiJ_G0021059) #22 MGP_PahariEiJ_G0021058 #23 MGP_PahariEiJ_G0021057 #24 Zfp324 (MGP_PahariEiJ_G0021056) #25 Rnf225 (MGP_PahariEiJ_G0021055) #26 Rps5 (MGP_PahariEiJ_G0021054) #27 Zscan22 (MGP_PahariEiJ_G0021053) #28 Zfp128 (MGP_PahariEiJ_G0021052) #29 Zfp110 (MGP_PahariEiJ_G0021051) #30 Zfp329 (MGP_PahariEiJ_G0021050) #31 MGP_PahariEiJ_G0021049 #32 MGP_PahariEiJ_G0021048 2900092C05Rik (MGP_PahariEiJ_G0021047) Zfp606 (MGP_PahariEiJ_G0021046) MGP_PahariEiJ_G0021045 Zfp773 (MGP_PahariEiJ_G0021044) Rat MODERN SPECIES Vom1r61 (ENSRNOG00000014181) Vom1r60 (ENSRNOG00000065183) ENSRNOG00000065806 Vom1r59 (ENSRNOG00000030886) Vom1r57 (ENSRNOG00000057670) Vom1r56 (ENSRNOG00000070690) LOC120097724 (ENSRNOG00000064555) LOC100365062 (ENSRNOG00000060288) ENSRNOG00000063282 Vom1r55 (ENSRNOG00000049810) Mzf1 (ENSRNOG00000027550) ENSRNOG00000065335 Ube2m (ENSRNOG00000027514) Chmp2a (ENSRNOG00000043328) Trim28 (ENSRNOG00000027487) Zbtb45 (ENSRNOG00000027459) #22 Slc27a5 (ENSRNOG00000019626) #23 Zfp446 (ENSRNOG00000060429) #24 Zfp324 (ENSRNOG00000027436) #25 ENSRNOG00000063212 Rnf225 (ENSRNOG00000038445) #26 Rps5 (ENSRNOG00000019453) #27 Zscan22 (ENSRNOG00000031113) #28 Znf8 (ENSRNOG00000031459) #29 Zfp110 (ENSRNOG00000031328) #30 Zfp329 (ENSRNOG00000019376) #31 ENSRNOG00000068712 Zscan18 (ENSRNOG00000026861) #32 Vom2r35 (ENSRNOG00000050831) Vom2r33 (ENSRNOG00000064978) AABR07002093.2 (ENSRNOG00000048663) Upper Galilee mountains blind mole rat MODERN SPECIES 1811 ENSNGAG00000024274 #21 Ube2m (ENSNGAG00000023391) Chmp2a (ENSNGAG00000011057) Zbtb45 (ENSNGAG00000005780) #22 Slc27a5 (ENSNGAG00000006680) #23 Zfp446 (ENSNGAG00000023891) #24 Trim28 (ENSNGAG00000014844) ENSNGAG00000016304 Rnf225 (ENSNGAG00000010105) #26 Rps5 (ENSNGAG00000015766) #27 Zscan22 (ENSNGAG00000017861) #28 Zfp128 (ENSNGAG00000021534) #29 ENSNGAG00000023445 #30 Zfp329 (ENSNGAG00000012452) #31 Zscan18 (ENSNGAG00000019779) #32 ENSNGAG00000023608 ENSNGAG00000019154 ENSNGAG00000022887 Zfp606 (ENSNGAG00000013504) Lesser Egyptian jerboa MODERN SPECIES 274 Mzf1 (ENSJJAG00000003643) Ube2m (ENSJJAG00000003971) Chmp2a (ENSJJAG00000004071) Trim28 (ENSJJAG00000005716) ENSJJAG00000007109 #22 Slc27a5 (ENSJJAG00000007484) #23 Zfp446 (ENSJJAG00000001143) #24 Rps5 (ENSJJAG00000002076) #27 Zscan22 (ENSJJAG00000002315) #28 Zfp128 (ENSJJAG00000002739) #29 ENSJJAG00000003558 #30 Zfp329 (ENSJJAG00000011641) #31 Rodentia_A ANCESTRAL SPECIES 28 ENSGT00940000154740.a.b.b #21 ENSGT00940000163935 ENSGT01100000263552.g.b.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000163047 ENSGT00940000163291 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT01100000263562.b.a.a.c.a ENSGT00940000162352 #29 ENSGT00980000199879 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000154249.b ENSGT00940000161820 ENSGT00940000167588 Hystricomorpha ANCESTRAL SPECIES 68 ENSGT00950000182890.A.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527.e ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000163047 ENSGT00940000163291 ENSGT00390000010806 #27 ENSGT00940000162352.c #29 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000154249.b.e ENSGT00940000161820 ENSGT00940000167588 ENSGT00940000154693.b ENSGT00940000154734.B.c.b ENSGT00960000186612.B.a.b.a.b.b ENSGT00390000012244 Hystricomorpha_a ANCESTRAL SPECIES 81 ENSGT00950000182890.A.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527.e ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000163047 ENSGT00940000163291 ENSGT00390000010806 #27 ENSGT00940000162352.c #29 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000154249.b.e ENSGT00940000161820 ENSGT00940000167588 ENSGT00940000161684.b.a.b ENSGT00940000161016.C ENSGT00940000163877 ENSGT00940000161619 Hystricomorpha_b ANCESTRAL SPECIES 117 ENSGT00950000182890.A.b ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527.e ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000163047 ENSGT00390000010806 #27 ENSGT00940000162352.c #29 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000154249.b.e ENSGT00940000161820 ENSGT00940000167588 ENSGT00940000161684.b.a.b ENSGT00940000161016.C ENSGT00940000163877 Long-tailed chinchilla MODERN SPECIES 291 ENSCLAG00000000220 UBE2M (ENSCLAG00000000436) CHMP2A (ENSCLAG00000000833) ENSCLAG00000000182 ZBTB45 (ENSCLAG00000000169) #22 SLC27A5 (ENSCLAG00000000133) #23 ZNF446 (ENSCLAG00000000371) #24 ENSCLAG00000000337 RPS5 (ENSCLAG00000000313) #27 ZNF8 (ENSCLAG00000001510) #29 ENSCLAG00000001465 #30 ZNF329 (ENSCLAG00000017533) #31 ENSCLAG00000000652 ENSCLAG00000000604 ZNF606 (ENSCLAG00000000486) ENSCLAG00000001041 ENSCLAG00000000973 ENSCLAG00000000308 ZNF550 (ENSCLAG00000000250) ZNF548 (ENSCLAG00000000201) Guinea pig MODERN SPECIES 52 N6AMT1 (ENSCPOG00000030645) ADAMTS5 (ENSCPOG00000009911) ADAMTS1 (ENSCPOG00000035904) CYYR1 (ENSCPOG00000000968) APP (ENSCPOG00000001427) GABPA (ENSCPOG00000035074) ATP5PF (ENSCPOG00000004703) JAM2 (ENSCPOG00000004699) MRPL39 (ENSCPOG00000025162) ENSCPOG00000036378 ENSCPOG00000027461 MZF1 (ENSCPOG00000009921) UBE2M (ENSCPOG00000026733) CHMP2A (ENSCPOG00000023920) ENSCPOG00000005745 ZBTB45 (ENSCPOG00000021221) #22 SLC27A5 (ENSCPOG00000012620) #23 ZNF446 (ENSCPOG00000032178) #24 ENSCPOG00000039862 ENSCPOG00000021589 ZNF584 (ENSCPOG00000031428) RPS5 (ENSCPOG00000023995) #27 ZNF8 (ENSCPOG00000031529) #29 ENSCPOG00000030617 WTIP (ENSCPOG00000036934) UBA2 (ENSCPOG00000010543) PDCD2L (ENSCPOG00000006016) GPI (ENSCPOG00000008562) GARRE1 (ENSCPOG00000027055) LSM14A (ENSCPOG00000025803) KCTD15 (ENSCPOG00000040268) Naked mole-rat female MODERN SPECIES 21 CA11 (ENSHGLG00000013593) NTN5 (ENSHGLG00000017712) ENSHGLG00000032260 ENSHGLG00000037963 MAMSTR (ENSHGLG00000016428) RASIP1 (ENSHGLG00000016320) IZUMO1 (ENSHGLG00000008799) FGF21 (ENSHGLG00000007793) ENSHGLG00000006409 ENSHGLG00000041996 ENSHGLG00000035629 ENSHGLG00000043910 ENSHGLG00000046810 ENSHGLG00000009529 ENSHGLG00000004444 ENSHGLG00000049276 #22 ENSHGLG00000042608 #24 ENSHGLG00000035635 ENSHGLG00000045483 RPS5 (ENSHGLG00000007229) #27 ENSHGLG00000036890 ENSHGLG00000020168 ENSHGLG00000035466 #29 ENSHGLG00000043690 #29 ENSHGLG00000046332 #31 ENSHGLG00000005746 ENSHGLG00000020255 ENSHGLG00000046248 ENSHGLG00000007810 ENSHGLG00000009157 ENSHGLG00000040533 Sciuridae ANCESTRAL SPECIES 39 ENSGT00940000154740.a.b.b #21 ENSGT00940000163935 ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092.c #24 ENSGT00940000162092.d #24 ENSGT00940000163047 ENSGT00940000163291 ENSGT00940000163974 #26 ENSGT00390000010806.f #27 ENSGT01100000263562.b.a.a.c.a ENSGT00940000162352 #29 ENSGT00980000199879 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000154249.b ENSGT00940000161820 Marmotini ANCESTRAL SPECIES 48 ENSGT00940000154740.a.b.b #21 ENSGT00940000163935 ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092.c #24 ENSGT00940000162092.d #24 ENSGT00940000163047 ENSGT00390000010806.f #27 ENSGT01100000263562.b.a.a.c.a ENSGT00940000162352 #29 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000161820 ENSGT00390000018040 ENSGT00940000154734.B.c.b ENSGT00390000012244 ENSGT00940000161684.b.a.b Marmotini_b ANCESTRAL SPECIES 177 ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092.d #24 ENSGT00940000163047 ENSGT00940000162352 #29 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000161820 ENSGT00390000018040 ENSGT00940000154734.B.c.b ENSGT00390000012244 ENSGT00940000161684.b.a.b ENSGT00940000162907.g ENSGT00940000163877 ENSGT00940000164088 Squirrel MODERN SPECIES 601 MZF1 (ENSSTOG00000020983) UBE2M (ENSSTOG00000026826) ENSSTOG00000022368 TRIM28 (ENSSTOG00000022036) ZBTB45 (ENSSTOG00000004240) #22 SLC27A5 (ENSSTOG00000004217) #23 ENSSTOG00000026692 #24 ENSSTOG00000002106 RPS5 (ENSSTOG00000005935) #27 Arctic ground squirrel MODERN SPECIES 699 MZF1 (ENSUPAG00010006541) UBE2M (ENSUPAG00010006535) CHMP2A (ENSUPAG00010006508) TRIM28 (ENSUPAG00010006492) ZBTB45 (ENSUPAG00010006485) #22 SLC27A5 (ENSUPAG00010006468) #23 ENSUPAG00010006465 #24 ENSUPAG00010006454 #24 ENSUPAG00010006451 ENSUPAG00010006448 RPS5 (ENSUPAG00010006418) #27 A1BG (ENSUPAG00010006410) ENSUPAG00010006403 ZNF8 (ENSUPAG00010006398) #29 ZNF274 (ENSUPAG00010006394) #30 ZNF329 (ENSUPAG00010006383) #31 ZSCAN18 (ENSUPAG00010006377) #32 ZNF606 (ENSUPAG00010006360) ENSUPAG00010006355 ENSUPAG00010006352 Alpin marmot MODERN SPECIES 104 ENSMMMG00000024704 #21 ENSMMMG00000024705 CHMP2A (ENSMMMG00000024706) TRIM28 (ENSMMMG00000024707) ZBTB45 (ENSMMMG00000024708) #22 SLC27A5 (ENSMMMG00000024709) #23 ENSMMMG00000024710 RPS5 (ENSMMMG00000024711) #27 ENSMMMG00000024712 ZNF8 (ENSMMMG00000024713) #29 ENSMMMG00000024714 ZNF329 (ENSMMMG00000024715) #31 ZSCAN18 (ENSMMMG00000024716) #32 ZNF606 (ENSMMMG00000024717) ENSMMMG00000024718 ENSMMMG00000024720 ENSMMMG00000024721 ZIK1 (ENSMMMG00000024722) ZNF416 (ENSMMMG00000024723) ENSMMMG00000000015 Eurasian red squirrel MODERN SPECIES 8 MZF1 (ENSSVLG00005019414) UBE2M (ENSSVLG00005019367) CHMP2A (ENSSVLG00005019302) TRIM28 (ENSSVLG00005019173) ZBTB45 (ENSSVLG00005019097) #22 SLC27A5 (ENSSVLG00005018887) #23 ZNF446 (ENSSVLG00005018799) #24 ENSSVLG00005018768 ZNF584 (ENSSVLG00005018728) RNF225 (ENSSVLG00005018714) #26 ENSSVLG00005018625 #27 A1BG (ENSSVLG00005018478) ZNF8 (ENSSVLG00005018398) #29 ENSSVLG00005018332 ZNF274 (ENSSVLG00005018293) #30 ZNF329 (ENSSVLG00005018271) #31 ENSSVLG00005018244 #32 ENSSVLG00005018178 ENSSVLG00005018101 ENSSVLG00005018025 Lagomorpha ANCESTRAL SPECIES 116 ENSGT00940000162814 ENSGT00950000182832.A ENSGT00940000160527 ENSGT00940000160859 #22 ENSGT00940000157947 #23 ENSGT00940000162092 #24 ENSGT00940000164133 #25 ENSGT00940000165288 ENSGT00940000163291 ENSGT00940000163974 #26 ENSGT00390000010806 #27 ENSGT01100000263562.b.a.a.c.a ENSGT00940000163014 #28 ENSGT00940000162352 #29 ENSGT00940000162111 #30 ENSGT00940000162872 #31 ENSGT00940000163034 #32 ENSGT00940000153104.e.a.a.a.a.a ENSGT00940000154249.b Rabbit MODERN SPECIES 496 ENSOCUG00000016628 CHMP2A (ENSOCUG00000016621) TRIM28 (ENSOCUG00000016607) ZBTB45 (ENSOCUG00000013828) #22 SLC27A5 (ENSOCUG00000025386) #23 ZNF446 (ENSOCUG00000034554) #24 ENSOCUG00000010118 #25 ENSOCUG00000030168 ZNF584 (ENSOCUG00000029585) RNF225 (ENSOCUG00000038970) #26 RPS5 (ENSOCUG00000024505) #27 A1BG (ENSOCUG00000010122) ZSCAN22 (ENSOCUG00000022361) #28 ZNF8 (ENSOCUG00000029759) #29 ENSOCUG00000036157 ZNF274 (ENSOCUG00000001406) #30 ZNF329 (ENSOCUG00000002886) #31 ZSCAN18 (ENSOCUG00000003567) #32 ZNF135 (ENSOCUG00000038619) Pika MODERN SPECIES 4896 ENSOPRG00000017065 ENSOPRG00000017059 TRIM28 (ENSOPRG00000017043) ZBTB45 (ENSOPRG00000017040) #22 ENSOPRG00000017035 #23