Mus_A	ANCESTRAL SPECIES	3	ENSGT00530000063681.b.b	ENSGT00940000161775 #7	ENSGT00510000049371 #8	ENSGT00390000010922 #9	ENSGT00390000007658 #10	ENSGT00390000015471 #11	ENSGT00390000008338 #12	ENSGT00390000007464 #13	ENSGT00390000008549 #14	ENSGT00490000043472 #15	ENSGT00940000159474 #16	ENSGT00950000183087.A.a.b.b.g.m.a.b.b.b.b #17	ENSGT00940000156450 #19	ENSGT00940000156945 #20	ENSGT00530000063460.A.a #21	ENSGT00940000160126 #22	ENSGT00940000160247 #23	ENSGT00940000158038 #24	ENSGT00390000007027	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.b	ENSGT01030000234531.A.b.a.a	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.a	ENSGT01030000234531.A.b.a.b
Mus_B	ANCESTRAL SPECIES	5	ENSGT00530000063681.b.b	ENSGT00940000161775 #7	ENSGT00510000049371 #8	ENSGT00390000010922 #9	ENSGT00390000007658 #10	ENSGT00390000015471 #11	ENSGT00390000008338 #12	ENSGT00390000007464 #13	ENSGT00390000008549 #14	ENSGT00490000043472 #15	ENSGT00940000159474 #16	ENSGT00950000183087.A.a.b.b.g.m.a.b.b.b.b #17	ENSGT00940000156450 #19	ENSGT00940000156945 #20	ENSGT00530000063460.A.a #21	ENSGT00940000160126 #22	ENSGT00940000160247 #23	ENSGT00940000158038 #24	ENSGT00390000007027	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.b	ENSGT01030000234531.A.b.a.a	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.a	ENSGT01030000234531.A.b.a.b
Mus_C	ANCESTRAL SPECIES	2	ENSGT00530000063681.b.b	ENSGT00940000161775 #7	ENSGT00510000049371 #8	ENSGT00390000010922 #9	ENSGT00390000007658 #10	ENSGT00390000015471 #11	ENSGT00390000008338 #12	ENSGT00390000007464 #13	ENSGT00390000008549 #14	ENSGT00490000043472 #15	ENSGT00940000159474 #16	ENSGT00950000183087.A.a.b.b.g.m.a.b.b.b.b #17	ENSGT00940000156450 #19	ENSGT00940000156945 #20	ENSGT00530000063460.A.a #21	ENSGT00940000160126 #22	ENSGT00940000160247 #23	ENSGT00940000158038 #24	ENSGT00390000007027	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.a	ENSGT01030000234531.A.b.a.b	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a	ENSGT00730000111209
Steppe mouse	MODERN SPECIES	3172	Mroh7 (ENSMSIG00000028891) #7	ENSMSIG00000028860 #8	Pars2 (ENSMSIG00000028858) #9	Ttc22 (ENSMSIG00000028852) #10	Lexm (ENSMSIG00000028842) #11	Dhcr24 (ENSMSIG00000028839) #12	ENSMSIG00000028836 #13	Bsnd (ENSMSIG00000028832) #14	Pcsk9 (ENSMSIG00000028827) #15	Usp24 (ENSMSIG00000028765) #16	ENSMSIG00000028734 #17	ENSMSIG00000028731 #18	Plpp3 (ENSMSIG00000028724) #19	Prkaa2 (ENSMSIG00000028721) #20	Fyb2 (ENSMSIG00000028687) #21	C8a (ENSMSIG00000028660) #22	C8b (ENSMSIG00000028644) #23	ENSMSIG00000028637 #24	Glud1 (ENSMSIG00000028620) #25	ENSMSIG00000028614 #26	ENSMSIG00000028610 #27	Mmrn2 (ENSMSIG00000028602) #28	Bmpr1a (ENSMSIG00000028586) #29	9230112D13Rik (ENSMSIG00000028580) #30	Ldb3 (ENSMSIG00000028460) #31	Opn4 (ENSMSIG00000028439) #32	Wapl (ENSMSIG00000028406) #33
spretus	MODERN SPECIES	13	Fam151a (MGP_SPRETEiJ_G0027208)	Mroh7 (MGP_SPRETEiJ_G0027207) #7	Ttc4 (MGP_SPRETEiJ_G0027206) #8	Pars2 (MGP_SPRETEiJ_G0027205) #9	Ttc22 (MGP_SPRETEiJ_G0027204) #10	Lexm (MGP_SPRETEiJ_G0027203) #11	Dhcr24 (MGP_SPRETEiJ_G0027202) #12	Bsnd (MGP_SPRETEiJ_G0027201) #14	Pcsk9 (MGP_SPRETEiJ_G0027200) #15	Usp24 (MGP_SPRETEiJ_G0027199) #16	MGP_SPRETEiJ_G0027198 #17	Plpp3 (MGP_SPRETEiJ_G0027197) #19	Prkaa2 (MGP_SPRETEiJ_G0027196) #20	Fyb2 (MGP_SPRETEiJ_G0027195) #21	MGP_SPRETEiJ_G0027194	C8a (MGP_SPRETEiJ_G0027193) #22	C8b (MGP_SPRETEiJ_G0027192) #23	Dab1 (MGP_SPRETEiJ_G0027191) #24	Oma1 (MGP_SPRETEiJ_G0027190)	4921539E11Rik (MGP_SPRETEiJ_G0027189)	Slc35d1 (MGP_SPRETEiJ_G0027188)	Mier1 (MGP_SPRETEiJ_G0027187)	Dnai4 (MGP_SPRETEiJ_G0027186)	Insl5 (MGP_SPRETEiJ_G0027185)	Dynlt5 (MGP_SPRETEiJ_G0027184)	Sgip1 (MGP_SPRETEiJ_G0027183)	Pde4b (MGP_SPRETEiJ_G0027182)	MGP_SPRETEiJ_G0027181	MGP_SPRETEiJ_G0027180	MGP_SPRETEiJ_G0027179	C130073F10Rik (MGP_SPRETEiJ_G0027178)
Mouse	MODERN SPECIES	13	Acot11 (ENSMUSG00000034853)	Fam151a (ENSMUSG00000034871)	Mroh7 (ENSMUSG00000047502) #7	Ttc4 (ENSMUSG00000025413) #8	Pars2 (ENSMUSG00000043572) #9	Ttc22 (ENSMUSG00000034919) #10	Lexm (ENSMUSG00000054362) #11	Dhcr24 (ENSMUSG00000034926) #12	Tmem61 (ENSMUSG00000085933) #13	Bsnd (ENSMUSG00000025418) #14	Pcsk9 (ENSMUSG00000044254) #15	Usp24 (ENSMUSG00000028514) #16	Plpp3 (ENSMUSG00000028517) #19	Prkaa2 (ENSMUSG00000028518) #20	Fyb2 (ENSMUSG00000078612) #21	C8a (ENSMUSG00000035031) #22	C8b (ENSMUSG00000029656) #23	Dab1 (ENSMUSG00000028519) #24	Oma1 (ENSMUSG00000035069)	4921539E11Rik (ENSMUSG00000028520)	Slc35d1 (ENSMUSG00000028521)	Mier1 (ENSMUSG00000028522)	Dnai4 (ENSMUSG00000035126)	Insl5 (ENSMUSG00000066090)	Dynlt5 (ENSMUSG00000028523)	Sgip1 (ENSMUSG00000028524)	Pde4b (ENSMUSG00000028525)	Gm12789 (ENSMUSG00000078625)	Gm12790 (ENSMUSG00000078626)	Pramel19 (ENSMUSG00000070890)	Pramel18 (ENSMUSG00000037028)
Ryukyu mouse	MODERN SPECIES	13	Fam151a (MGP_CAROLIEiJ_G0026239)	Mroh7 (MGP_CAROLIEiJ_G0026238) #7	Ttc4 (MGP_CAROLIEiJ_G0026237) #8	Pars2 (MGP_CAROLIEiJ_G0026236) #9	Ttc22 (MGP_CAROLIEiJ_G0026235) #10	Lexm (MGP_CAROLIEiJ_G0026234) #11	Dhcr24 (MGP_CAROLIEiJ_G0026233) #12	Bsnd (MGP_CAROLIEiJ_G0026232) #14	Pcsk9 (MGP_CAROLIEiJ_G0026231) #15	Usp24 (MGP_CAROLIEiJ_G0026230) #16	MGP_CAROLIEiJ_G0026229 #17	Plpp3 (MGP_CAROLIEiJ_G0026228) #19	Prkaa2 (MGP_CAROLIEiJ_G0026227) #20	Fyb2 (MGP_CAROLIEiJ_G0026226) #21	MGP_CAROLIEiJ_G0026225	C8a (MGP_CAROLIEiJ_G0026224) #22	C8b (MGP_CAROLIEiJ_G0026223) #23	Dab1 (MGP_CAROLIEiJ_G0026222) #24	Oma1 (MGP_CAROLIEiJ_G0026221)	4921539E11Rik (MGP_CAROLIEiJ_G0026220)	Slc35d1 (MGP_CAROLIEiJ_G0026219)	Mier1 (MGP_CAROLIEiJ_G0026218)	Dnai4 (MGP_CAROLIEiJ_G0026217)	Insl5 (MGP_CAROLIEiJ_G0026216)	MGP_CAROLIEiJ_G0026215	Sgip1 (MGP_CAROLIEiJ_G0026214)	Pde4b (MGP_CAROLIEiJ_G0026213)	Gm12789 (MGP_CAROLIEiJ_G0026212)	MGP_CAROLIEiJ_G0026211	MGP_CAROLIEiJ_G0026210	C130073F10Rik (MGP_CAROLIEiJ_G0026209)