Euteleostomi	ANCESTRAL SPECIES	25	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.A ##15	ENSGT01030000234583.a.a.d	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT00940000166005	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Sarcopterygii	ANCESTRAL SPECIES	56	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.A ##15	ENSGT01030000234583.a.a.d	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT00940000166005	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35
Tetrapoda	ANCESTRAL SPECIES		ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.A ##15	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Amniota	ANCESTRAL SPECIES		ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.b ##19	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Mammalia	ANCESTRAL SPECIES		ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.b ##19	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Theria	ANCESTRAL SPECIES	1	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Eutheria	ANCESTRAL SPECIES	17	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00740000117041	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33
Boreoeutheria	ANCESTRAL SPECIES	21	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00740000117041	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33
Euarchontoglires	ANCESTRAL SPECIES	21	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35
Primates	ANCESTRAL SPECIES	29	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00390000017100	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Strepsirrhini	ANCESTRAL SPECIES	41	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00950000183120.e.b.a.a.b.b.a.b.b #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Lemuriformes	ANCESTRAL SPECIES	18	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37
Mouse lemur	MODERN SPECIES	4	SMAD9 (ENSMICG00000042342) #7	RFXAP (ENSMICG00000030008) #8	SERTM1 (ENSMICG00000044400) #9	CCNA1 (ENSMICG00000002509) #10	SPART (ENSMICG00000002494) #11	CCDC169 (ENSMICG00000046020) #12	SOHLH2 (ENSMICG00000002484) #13	DCLK1 (ENSMICG00000014330) #14	NBEA (ENSMICG00000031103) #15	MAB21L1 (ENSMICG00000043536) #16	RFC3 (ENSMICG00000015059) #17	ENSMICG00000045628 #18	STARD13 (ENSMICG00000006239) #19	KL (ENSMICG00000006234) #20	PDS5B (ENSMICG00000005747) #21	N4BP2L2 (ENSMICG00000012027) #22	N4BP2L1 (ENSMICG00000035139) #23	BRCA2 (ENSMICG00000041755) #24	ZAR1L (ENSMICG00000037332) #25	FRY (ENSMICG00000011937) #26	RXFP2 (ENSMICG00000011921) #27	B3GLCT (ENSMICG00000011910) #28	HSPH1 (ENSMICG00000011892) #29	TEX26 (ENSMICG00000008723) #30	MEDAG (ENSMICG00000011156) #31	ALOX5AP (ENSMICG00000001953) #32	USPL1 (ENSMICG00000045622) #33	ENSMICG00000007144 #34	KATNAL1 (ENSMICG00000004250) #35	UBL3 (ENSMICG00000033508) #36	SLC7A1 (ENSMICG00000016312) #37
Lemuriformes_a	ANCESTRAL SPECIES	41	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37
Greater bamboo lemur	MODERN SPECIES	515																N4BP2L2 (ENSPSMG00000018877) #22	N4BP2L1 (ENSPSMG00000018855) #23	ENSPSMG00000018844	BRCA2 (ENSPSMG00000018840) #24	ZAR1L (ENSPSMG00000018825) #25	FRY (ENSPSMG00000018267) #26	RXFP2 (ENSPSMG00000017636) #27
Coquerels sifaka	MODERN SPECIES	251											RFC3 (ENSPCOG00000019739) #17	ENSPCOG00000013774	STARD13 (ENSPCOG00000016684) #19	KL (ENSPCOG00000025946) #20	PDS5B (ENSPCOG00000024170) #21	N4BP2L2 (ENSPCOG00000020733) #22	N4BP2L1 (ENSPCOG00000019528) #23	BRCA2 (ENSPCOG00000015387) #24	ZAR1L (ENSPCOG00000018939) #25	FRY (ENSPCOG00000018320) #26	RXFP2 (ENSPCOG00000011955) #27	B3GLCT (ENSPCOG00000004609) #28	ENSPCOG00000027960 #29	TEX26 (ENSPCOG00000022109) #30	MEDAG (ENSPCOG00000020360) #31	ALOX5AP (ENSPCOG00000016712) #32	USPL1 (ENSPCOG00000021502) #33	ENSPCOG00000013493 ##34	KATNAL1 (ENSPCOG00000022614) #35	UBL3 (ENSPCOG00000027179) #36	SLC7A1 (ENSPCOG00000025154) #37
Bushbaby	MODERN SPECIES	235																ENSOGAG00000015760 #22	N4BP2L1 (ENSOGAG00000015753) #23	BRCA2 (ENSOGAG00000010588) #24	ZAR1L (ENSOGAG00000031001) #25	FRY (ENSOGAG00000010473) #26	RXFP2 (ENSOGAG00000010469) #27	B3GLCT (ENSOGAG00000011196) #28	HSPH1 (ENSOGAG00000009898) #29	TEX26 (ENSOGAG00000006834) #30	MEDAG (ENSOGAG00000034882) #31	ALOX5AP (ENSOGAG00000015495) #32	USPL1 (ENSOGAG00000015490) #33	ENSOGAG00000026314	ENSOGAG00000030054	ENSOGAG00000003205 #34	KATNAL1 (ENSOGAG00000011308) #35
Haplorrhini	ANCESTRAL SPECIES	43	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000017100	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.b.b ##34	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35
Tarsier	MODERN SPECIES	6062																N4BP2L2 (ENSTSYG00000027394) #22
Simiiformes	ANCESTRAL SPECIES	22	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00390000017100	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Platyrrhini	ANCESTRAL SPECIES	23	ENSGT00390000006573 #8	ENSGT00940000153232.a.b.p	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956.ib.b #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00390000017100	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.b.b ##34	ENSGT00950000183120.e.b.b.b ##34	ENSGT00940000156630 #35
Mas night monkey	MODERN SPECIES	1366	CCDC169 (ENSANAG00000027605) #12	SOHLH2 (ENSANAG00000027740) #13	ENSANAG00000034415 #14	NBEA (ENSANAG00000035835) #15	MAB21L1 (ENSANAG00000006106) #16	ENSANAG00000013822	RFC3 (ENSANAG00000020441) #17	ENSANAG00000025512	ENSANAG00000029740	STARD13 (ENSANAG00000018248) #19	ENSANAG00000030076	KL (ENSANAG00000028905) #20	PDS5B (ENSANAG00000020920) #21	ENSANAG00000037444	ENSANAG00000011089	ENSANAG00000019223 #22	N4BP2L1 (ENSANAG00000029400) #23	BRCA2 (ENSANAG00000025577) #24	ZAR1L (ENSANAG00000037320) #25	FRY (ENSANAG00000030749) #26	ENSANAG00000031194	RXFP2 (ENSANAG00000034315) #27
Cebidae	ANCESTRAL SPECIES	26	ENSGT00390000006573 #8	ENSGT00940000153232.a.b.p	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956.ib.b #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00390000017100	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b.e #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.b.b ##34	ENSGT00950000183120.e.b.b.b ##34	ENSGT00940000156630 #35
Marmoset	MODERN SPECIES	17	CCNA1 (ENSCJAG00000018144) #10	SPART (ENSCJAG00000044775) #11	CCDC169 (ENSCJAG00000031495) #12	ENSCJAG00000069855	SOHLH2 (ENSCJAG00000018188) #13	DCLK1 (ENSCJAG00000018203) #14	ENSCJAG00000070934	MAB21L1 (ENSCJAG00000081780) #16	ENSCJAG00000086918	NBEA (ENSCJAG00000018225) #15	RFC3 (ENSCJAG00000018380) #17	STARD13 (ENSCJAG00000018399) #19	KL (ENSCJAG00000018421) #20	ENSCJAG00000068003	PDS5B (ENSCJAG00000018428) #21	ENSCJAG00000018437 #22	N4BP2L1 (ENSCJAG00000018453) #23	BRCA2 (ENSCJAG00000018462) #24	ZAR1L (ENSCJAG00000018479) #25	FRY (ENSCJAG00000018482) #26	RXFP2 (ENSCJAG00000018522) #27	B3GLCT (ENSCJAG00000018570) #28	HSPH1 (ENSCJAG00000018597) #29	TEX26 (ENSCJAG00000018665) #30	MEDAG (ENSCJAG00000018674) #31	ALOX5AP (ENSCJAG00000021617) #32	USPL1 (ENSCJAG00000021616) #33	ENSCJAG00000020439 ##34	ENSCJAG00000079039	KATNAL1 (ENSCJAG00000021612) #35	UBL3 (ENSCJAG00000019517) #36
Cebidae_a	ANCESTRAL SPECIES	28	ENSGT00390000006573 #8	ENSGT00940000153232.a.b.p	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956.ib.b #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00390000017100	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b.e #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.b.b ##34	ENSGT00940000156630 #35	ENSGT00390000011417.k.d
Capuchin	MODERN SPECIES	108	SERTM1 (ENSCCAG00000019130) #9	ENSCCAG00000022853	CCNA1 (ENSCCAG00000031585) #10	SPART (ENSCCAG00000034556) #11	CCDC169 (ENSCCAG00000029292) #12	SOHLH2 (ENSCCAG00000005200) #13	ENSCCAG00000004898 #14	MAB21L1 (ENSCCAG00000020241) #16	NBEA (ENSCCAG00000030780) #15	RFC3 (ENSCCAG00000037995) #17	ENSCCAG00000035762	STARD13 (ENSCCAG00000037627) #19	KL (ENSCCAG00000029276) #20	PDS5B (ENSCCAG00000027078) #21	ENSCCAG00000027860	N4BP2L2 (ENSCCAG00000036646) #22	ENSCCAG00000027297	N4BP2L1 (ENSCCAG00000030025) #23	BRCA2 (ENSCCAG00000033858) #24	ENSCCAG00000027916 #25	FRY (ENSCCAG00000023083) #26	RXFP2 (ENSCCAG00000017594) #27
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	106	ENSSBOG00000031771	SERTM1 (ENSSBOG00000018464) #9	ENSSBOG00000031402	CCNA1 (ENSSBOG00000024788) #10	SPART (ENSSBOG00000022178) #11	CCDC169 (ENSSBOG00000030756) #12	SOHLH2 (ENSSBOG00000034504) #13	DCLK1 (ENSSBOG00000035278) #14	NBEA (ENSSBOG00000036122) #15	MAB21L1 (ENSSBOG00000015537) #16	RFC3 (ENSSBOG00000002113) #17	STARD13 (ENSSBOG00000033967) #19	KL (ENSSBOG00000021191) #20	ENSSBOG00000007092	PDS5B (ENSSBOG00000024183) #21	N4BP2L2 (ENSSBOG00000027888) #22
Bolivian squirrel monkey	MODERN SPECIES	238			YIPF4 (ENSSBOG00000001338)	SLC30A6 (ENSSBOG00000030965)	ENSSBOG00000036285	SPAST (ENSSBOG00000024585)	DPY30 (ENSSBOG00000033207)	MEMO1 (ENSSBOG00000022432)	SRD5A2 (ENSSBOG00000022489)	XDH (ENSSBOG00000009041)	EHD3 (ENSSBOG00000030935)	CAPN14 (ENSSBOG00000022632)	GALNT14 (ENSSBOG00000028619)	CAPN13 (ENSSBOG00000029462)	LCLAT1 (ENSSBOG00000019891)	ENSSBOG00000022903 #22	N4BP2L1 (ENSSBOG00000026051) #23
Catarrhini	ANCESTRAL SPECIES	21	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00390000005732.u.b	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000017100	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT01030000235462	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35
Cercopithecidae	ANCESTRAL SPECIES	23	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00390000005732.u.b	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000017100	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT01030000235462	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35
Rhinopithecus	ANCESTRAL SPECIES	262										ENSGT00940000154934.B.r #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00390000005732.u.b	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000017100	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00950000183014.f.b.a.a.t.g.b.b	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00940000154686.g.b	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.l #34
Golden snub-nosed monkey	MODERN SPECIES	1315													STARD13 (ENSRROG00000029700) #19	KL (ENSRROG00000030290) #20	PDS5B (ENSRROG00000028746) #21	ENSRROG00000027299 #22	ENSRROG00000011425	N4BP2L1 (ENSRROG00000032331) #23	ENSRROG00000005500	BRCA2 (ENSRROG00000039182) #24	ZAR1L (ENSRROG00000028556) #25	FRY (ENSRROG00000037534) #26	RXFP2 (ENSRROG00000036551) #27	B3GLCT (ENSRROG00000042904) #28	HSPH1 (ENSRROG00000032648) #29	TEX26 (ENSRROG00000042882) #30	MEDAG (ENSRROG00000039395) #31	ALOX5AP (ENSRROG00000038443) #32	USPL1 (ENSRROG00000004322) #33	ENSRROG00000037184	ENSRROG00000033221 #34
Black snub-nosed monkey	MODERN SPECIES	1779														PDS5B (ENSRBIG00000044101) #21	ENSRBIG00000029939	ENSRBIG00000009552 #22	ENSRBIG00000022684	N4BP2L1 (ENSRBIG00000033768) #23
Cercopithecinae	ANCESTRAL SPECIES	20	ENSGT00940000153481.C	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT01030000235462	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35	ENSGT00940000155828.o.a
Vervet Monkey	MODERN SPECIES	22	SMAD9 (ENSCSAG00000017872) #7	RFXAP (ENSCSAG00000017874) #8	SERTM1 (ENSCSAG00000018595) #9	CCNA1 (ENSCSAG00000017875) #10	SPART (ENSCSAG00000017878) #11	ENSCSAG00000017880	SOHLH2 (ENSCSAG00000017881) #13	ENSCSAG00000017883 #14	ENSCSAG00000017885 #14	ENSCSAG00000017888 #15	MAB21L1 (ENSCSAG00000018594) #16	RFC3 (ENSCSAG00000017897) #17	STARD13 (ENSCSAG00000017899) #19	KL (ENSCSAG00000017903) #20	PDS5B (ENSCSAG00000017909) #21	ENSCSAG00000017912 #22	N4BP2L1 (ENSCSAG00000017915) #23	BRCA2 (ENSCSAG00000017920) #24	ZAR1L (ENSCSAG00000017921) #25	FRY (ENSCSAG00000017926) #26	RXFP2 (ENSCSAG00000017936) #27	B3GLCT (ENSCSAG00000017941) #28	HSPH1 (ENSCSAG00000017943) #29	TEX26 (ENSCSAG00000017946) #30	MEDAG (ENSCSAG00000017948) #31	ALOX5AP (ENSCSAG00000017950) #32	USPL1 (ENSCSAG00000017953) #33	KATNAL1 (ENSCSAG00000017958) #35	UBL3 (ENSCSAG00000017959) #36	SLC7A1 (ENSCSAG00000017961) #37	MTUS2 (ENSCSAG00000017964)
Cercopithecinae_a	ANCESTRAL SPECIES	19	ENSGT00390000007084.c.a.d.d	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT01030000235462.e	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00940000154686.g.b	ENSGT00940000156630 #35	ENSGT00940000155828.o.a
Macaca	ANCESTRAL SPECIES	19	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00910000147726	ENSGT00940000154956 #14	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00950000183014.f.b.a.a.t.g.b.b	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.b ##34	ENSGT00940000155828.o.a	ENSGT00940000156630 #35
Macaca_a	ANCESTRAL SPECIES	19	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00910000147726	ENSGT00940000154956 #14	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.b ##34	ENSGT00940000155828.o.a	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Crab-eating macaque	MODERN SPECIES	8	RFXAP (ENSMFAG00000043454) #8	SERTM1 (ENSMFAG00000040245) #9	CCNA1 (ENSMFAG00000035978) #10	SPART (ENSMFAG00000033182) #11	CCDC169 (ENSMFAG00000032877) #12	SOHLH2 (ENSMFAG00000031914) #13	ENSMFAG00000051768	DCLK1 (ENSMFAG00000030114) #14	MAB21L1 (ENSMFAG00000040502) #16	NBEA (ENSMFAG00000033753) #15	ENSMFAG00000053666	RFC3 (ENSMFAG00000041839) #17	STARD13 (ENSMFAG00000044541) #19	KL (ENSMFAG00000035814) #20	PDS5B (ENSMFAG00000037386) #21	N4BP2L2 (ENSMFAG00000007968) #22	ENSMFAG00000061510	ENSMFAG00000002717 #23	BRCA2 (ENSMFAG00000041961) #24	ZAR1L (ENSMFAG00000061082) #25	FRY (ENSMFAG00000040039) #26	RXFP2 (ENSMFAG00000003580) #27	B3GLCT (ENSMFAG00000041822) #28	HSPH1 (ENSMFAG00000018638) #29	TEX26 (ENSMFAG00000035671) #30	MEDAG (ENSMFAG00000035649) #31	ALOX5AP (ENSMFAG00000032586) #32	USPL1 (ENSMFAG00000032370) #33	ENSMFAG00000030905 ##34	UBE2L5 (ENSMFAG00000045697)	ENSMFAG00000053527
Rhesus	MODERN SPECIES	8	RFXAP (ENSMMUG00000009913) #8	SERTM1 (ENSMMUG00000057607) #9	CCNA1 (ENSMMUG00000001178) #10	SPART (ENSMMUG00000001176) #11	SOHLH2 (ENSMMUG00000001172) #13	DCLK1 (ENSMMUG00000016791) #14	MAB21L1 (ENSMMUG00000054545) #16	NBEA (ENSMMUG00000019831) #15	ENSMMUG00000059851	ENSMMUG00000049825	RFC3 (ENSMMUG00000003371) #17	STARD13 (ENSMMUG00000017052) #19	ENSMMUG00000063615	KL (ENSMMUG00000017048) #20	PDS5B (ENSMMUG00000007201) #21	N4BP2L2 (ENSMMUG00000007200) #22	N4BP2L1 (ENSMMUG00000007198) #23	BRCA2 (ENSMMUG00000007197) #24	ZAR1L (ENSMMUG00000038997) #25	ENSMMUG00000064811	FRY (ENSMMUG00000007192) #26	RXFP2 (ENSMMUG00000003898) #27	B3GLCT (ENSMMUG00000013713) #28	HSPH1 (ENSMMUG00000013707) #29	TEX26 (ENSMMUG00000019461) #30	MEDAG (ENSMMUG00000013346) #31	ENSMMUG00000053993	ALOX5AP (ENSMMUG00000005572) #32	USPL1 (ENSMMUG00000007597) #33	ENSMMUG00000052770	HMGB1 (ENSMMUG00000046615) ##34
Pig-tailed macaque	MODERN SPECIES	125	RFXAP (ENSMNEG00000028015) #8	SERTM1 (ENSMNEG00000027398) #9	CCNA1 (ENSMNEG00000028737) #10	SPART (ENSMNEG00000042733) #11	CCDC169 (ENSMNEG00000045062) #12	SOHLH2 (ENSMNEG00000038071) #13	ENSMNEG00000045366	DCLK1 (ENSMNEG00000028724) #14	MAB21L1 (ENSMNEG00000013264) #16	ENSMNEG00000014654	NBEA (ENSMNEG00000028837) #15	RFC3 (ENSMNEG00000032691) #17	STARD13 (ENSMNEG00000034305) #19	KL (ENSMNEG00000043961) #20	PDS5B (ENSMNEG00000043516) #21	ENSMNEG00000035638 #22	N4BP2L1 (ENSMNEG00000039181) #23	BRCA2 (ENSMNEG00000036002) #24	ZAR1L (ENSMNEG00000029527) #25	ENSMNEG00000033135	FRY (ENSMNEG00000030299) #26	RXFP2 (ENSMNEG00000032879) #27	B3GLCT (ENSMNEG00000035100) #28	HSPH1 (ENSMNEG00000032386) #29	TEX26 (ENSMNEG00000027388) #30	MEDAG (ENSMNEG00000033678) #31	ALOX5AP (ENSMNEG00000043933) #32	USPL1 (ENSMNEG00000034203) #33	HMGB1 (ENSMNEG00000028891) ##34	ENSMNEG00000039963	KATNAL1 (ENSMNEG00000036195) #35
Cercopithecinae_b	ANCESTRAL SPECIES	28	ENSGT00940000153481.C	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT01030000235462.e	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00940000154686.g.b	ENSGT00940000156630 #35	ENSGT00940000155828.o.a
Olive baboon	MODERN SPECIES	6	SERTM1 (ENSPANG00000006795) #9	CCNA1 (ENSPANG00000021629) #10	SPART (ENSPANG00000018678) #11	DCLK1 (ENSPANG00000003398) #14	MAB21L1 (ENSPANG00000050080) #16	NBEA (ENSPANG00000034571) #15	ENSPANG00000042024	ENSPANG00000050168	ENSPANG00000040588	ENSPANG00000041944	ENSPANG00000045015	RFC3 (ENSPANG00000013152) #17	STARD13 (ENSPANG00000021855) #19	KL (ENSPANG00000015481) #20	PDS5B (ENSPANG00000012753) #21	ENSPANG00000017987 #22	N4BP2L1 (ENSPANG00000019751) #23	BRCA2 (ENSPANG00000013323) #24	ZAR1L (ENSPANG00000011980) #25	FRY (ENSPANG00000012754) #26	ENSPANG00000050667	RXFP2 (ENSPANG00000011982) #27	B3GLCT (ENSPANG00000005486) #28	HSPH1 (ENSPANG00000012232) #29	TEX26 (ENSPANG00000012755) #30	MEDAG (ENSPANG00000021857) #31	ALOX5AP (ENSPANG00000020217) #32	USPL1 (ENSPANG00000005488) #33	HMGB1 (ENSPANG00000007200) ##34	UBE2L5 (ENSPANG00000043221)	KATNAL1 (ENSPANG00000023364) #35
Cercopithecinae_d	ANCESTRAL SPECIES	54	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00910000147726	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00950000183198.c.a.b.b	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT01030000235462.e	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00940000154686.g.b	ENSGT00940000156630 #35	ENSGT00940000155828.o.a
Drill	MODERN SPECIES	1247								RFC3 (ENSMLEG00000033956) #17	ENSMLEG00000029190	ENSMLEG00000038553	ENSMLEG00000036080	STARD13 (ENSMLEG00000043237) #19	KL (ENSMLEG00000040661) #20	PDS5B (ENSMLEG00000034460) #21	ENSMLEG00000042523	ENSMLEG00000037564 #22	N4BP2L1 (ENSMLEG00000037904) #23	BRCA2 (ENSMLEG00000036824) #24	ZAR1L (ENSMLEG00000039464) #25	FRY (ENSMLEG00000028962) #26	ENSMLEG00000035393	RXFP2 (ENSMLEG00000044020) #27
Sooty mangabey	MODERN SPECIES	125	RFXAP (ENSCATG00000041486) #8	SERTM1 (ENSCATG00000012042) #9	CCNA1 (ENSCATG00000039173) #10	SPART (ENSCATG00000044880) #11	CCDC169 (ENSCATG00000031543) #12	SOHLH2 (ENSCATG00000042220) #13	DCLK1 (ENSCATG00000011868) #14	ENSCATG00000035271	NBEA (ENSCATG00000030242) #15	MAB21L1 (ENSCATG00000012712) #16	RFC3 (ENSCATG00000012595) #17	STARD13 (ENSCATG00000044788) #19	KL (ENSCATG00000044821) #20	PDS5B (ENSCATG00000035609) #21	ENSCATG00000028940	ENSCATG00000035005 #22	N4BP2L1 (ENSCATG00000036810) #23	BRCA2 (ENSCATG00000031672) #24	ZAR1L (ENSCATG00000038889) #25	FRY (ENSCATG00000033487) #26	RXFP2 (ENSCATG00000045277) #27	B3GLCT (ENSCATG00000039061) #28	HSPH1 (ENSCATG00000045191) #29	TEX26 (ENSCATG00000021596) #30	MEDAG (ENSCATG00000028177) #31	ALOX5AP (ENSCATG00000030048) #32	USPL1 (ENSCATG00000034087) #33	ENSCATG00000037887	HMGB1 (ENSCATG00000017216) ##34	UBE2L5 (ENSCATG00000018077)	KATNAL1 (ENSCATG00000036007) #35
Hominoidea	ANCESTRAL SPECIES	21	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00390000005732.u.b	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000017100	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT01030000235462	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00940000154686.g.b	ENSGT00940000155828.o.a
Gibbon	MODERN SPECIES	24	ENSNLEG00000028288	SMAD9 (ENSNLEG00000001639) #7	RFXAP (ENSNLEG00000001626) #8	SERTM1 (ENSNLEG00000030436) #9	SPART (ENSNLEG00000001533) #11	ENSNLEG00000036082 #12	SOHLH2 (ENSNLEG00000030447) #13	DCLK1 (ENSNLEG00000001363) #14	NBEA (ENSNLEG00000001211) #15	MAB21L1 (ENSNLEG00000031696) #16	RFC3 (ENSNLEG00000001169) #17	ENSNLEG00000035439	STARD13 (ENSNLEG00000001147) #19	KL (ENSNLEG00000001146) #20	PDS5B (ENSNLEG00000001108) #21	ENSNLEG00000026904 #22	N4BP2L1 (ENSNLEG00000001095) #23	ENSNLEG00000018658	BRCA2 (ENSNLEG00000001048) #24	ENSNLEG00000001045 #25	FRY (ENSNLEG00000000913) #26	ENSNLEG00000033077	RXFP2 (ENSNLEG00000000880) #27	B3GLCT (ENSNLEG00000000847) #28	HSPH1 (ENSNLEG00000000827) #29	TEX26 (ENSNLEG00000000809) #30	MEDAG (ENSNLEG00000000801) #31	ENSNLEG00000029333 #32	USPL1 (ENSNLEG00000000756) #33	ENSNLEG00000029269	ENSNLEG00000000720 ##34
Hominidae	ANCESTRAL SPECIES	23	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00390000005732.u.b	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000017100	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT01030000235462	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.b.b ##34	ENSGT00940000155828.o.a
Orangutan	MODERN SPECIES	4	ALG5 (ENSPPYG00000005286)	RFXAP (ENSPPYG00000005284) #8	SERTM1 (ENSPPYG00000005282) #9	CCNA1 (ENSPPYG00000005281) #10	SPART (ENSPPYG00000005279) #11	CCDC169 (ENSPPYG00000005278) #12	SOHLH2 (ENSPPYG00000005276) #13	DCLK1 (ENSPPYG00000005275) #14	MAB21L1 (ENSPPYG00000005274) #16	NBEA (ENSPPYG00000005273) #15	RFC3 (ENSPPYG00000005272) #17	ENSPPYG00000038733	STARD13 (ENSPPYG00000005271) #19	KL (ENSPPYG00000005270) #20	PDS5B (ENSPPYG00000005269) #21	N4BP2L2 (ENSPPYG00000005268) #22	ENSPPYG00000005266	N4BP2L1 (ENSPPYG00000038196) #23	BRCA2 (ENSPPYG00000005264) #24	ZAR1L (ENSPPYG00000005263) #25	ENSPPYG00000041535	FRY (ENSPPYG00000005262) #26	RXFP2 (ENSPPYG00000005260) #27	B3GLCT (ENSPPYG00000005259) #28	HSPH1 (ENSPPYG00000005258) #29	TEX26 (ENSPPYG00000005257) #30	MEDAG (ENSPPYG00000005256) #31	ENSPPYG00000005255 #32	USPL1 (ENSPPYG00000005543) #33	ENSPPYG00000030447 ##34	UBE2L5 (ENSPPYG00000005254)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	23	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00390000005732.u.b.a	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000017100	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00950000183014.f.b.a.a.t.h.b	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000153654.ub
Gorilla	MODERN SPECIES	4	SMAD9 (ENSGGOG00000001017) #7	RFXAP (ENSGGOG00000025564) #8	SERTM1 (ENSGGOG00000040932) #9	CCNA1 (ENSGGOG00000025062) #10	SPART (ENSGGOG00000014695) #11	SOHLH2 (ENSGGOG00000002130) #13	DCLK1 (ENSGGOG00000006447) #14	MAB21L1 (ENSGGOG00000011768) #16	ENSGGOG00000037758	NBEA (ENSGGOG00000011724) #15	RFC3 (ENSGGOG00000017192) #17	STARD13 (ENSGGOG00000006398) #19	ENSGGOG00000007260 #20	PDS5B (ENSGGOG00000004950) #21	ENSGGOG00000040611	ENSGGOG00000025225 #22	ENSGGOG00000025412	N4BP2L1 (ENSGGOG00000015849) #23	BRCA2 (ENSGGOG00000015808) #24	ZAR1L (ENSGGOG00000015803) #25	FRY (ENSGGOG00000007253) #26	ENSGGOG00000023700	RXFP2 (ENSGGOG00000002645) #27	B3GLCT (ENSGGOG00000002840) #28	HSPH1 (ENSGGOG00000015313) #29	TEX26 (ENSGGOG00000016812) #30	MEDAG (ENSGGOG00000009867) #31	ENSGGOG00000013859 #32	USPL1 (ENSGGOG00000004673) #33	HMGB1 (ENSGGOG00000026764) ##34	UBE2L5 (ENSGGOG00000006857)
Homo/Pan group	ANCESTRAL SPECIES	22	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00390000005732.u.b.a	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000017100	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT01030000235462	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000153654.ub
Human	MODERN SPECIES	4	SMAD9 (ENSG00000120693) #7	RFXAP (ENSG00000133111) #8	SERTM1 (ENSG00000180440) #9	CCNA1 (ENSG00000133101) #10	SPART (ENSG00000133104) #11	CCDC169 (ENSG00000242715) #12	CCDC169-SOHLH2 (ENSG00000250709)	SOHLH2 (ENSG00000120669) #13	DCLK1 (ENSG00000133083) #14	MAB21L1 (ENSG00000180660) #16	NBEA (ENSG00000172915) #15	RFC3 (ENSG00000133119) #17	STARD13 (ENSG00000133121) #19	KL (ENSG00000133116) #20	PDS5B (ENSG00000083642) #21	N4BP2L2 (ENSG00000244754) #22	N4BP2L1 (ENSG00000139597) #23	BRCA2 (ENSG00000139618) #24	ZAR1L (ENSG00000189167) #25	FRY (ENSG00000073910) #26	RXFP2 (ENSG00000133105) #27	B3GLCT (ENSG00000187676) #28	HSPH1 (ENSG00000120694) #29	TEX26 (ENSG00000175664) #30	MEDAG (ENSG00000102802) #31	ALOX5AP (ENSG00000132965) #32	USPL1 (ENSG00000132952) #33	HMGB1 (ENSG00000189403) ##34	UBE2L5 (ENSG00000236444)	KATNAL1 (ENSG00000102781) #35	UBL3 (ENSG00000122042) #36
Pan	ANCESTRAL SPECIES	22	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00390000005732.u.b.a	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000017100	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT01030000235462	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000153654.ub
Chimpanzee	MODERN SPECIES	4	SMAD9 (ENSPTRG00000005788) #7	RFXAP (ENSPTRG00000005787) #8	SERTM1 (ENSPTRG00000051107) #9	CCNA1 (ENSPTRG00000005784) #10	SPART (ENSPTRG00000005782) #11	CCDC169 (ENSPTRG00000046000) #12	SOHLH2 (ENSPTRG00000005779) #13	DCLK1 (ENSPTRG00000005778) #14	MAB21L1 (ENSPTRG00000005777) #16	NBEA (ENSPTRG00000005775) #15	RFC3 (ENSPTRG00000005774) #17	STARD13 (ENSPTRG00000005773) #19	KL (ENSPTRG00000005772) #20	PDS5B (ENSPTRG00000005771) #21	ENSPTRG00000045346	N4BP2L2 (ENSPTRG00000005770) #22	ENSPTRG00000048653	N4BP2L1 (ENSPTRG00000045602) #23	BRCA2 (ENSPTRG00000005766) #24	ZAR1L (ENSPTRG00000046741) #25	ENSPTRG00000045380	FRY (ENSPTRG00000005764) #26	RXFP2 (ENSPTRG00000005762) #27	B3GLCT (ENSPTRG00000005761) #28	HSPH1 (ENSPTRG00000005760) #29	TEX26 (ENSPTRG00000005759) #30	MEDAG (ENSPTRG00000005758) #31	ALOX5AP (ENSPTRG00000005757) #32	USPL1 (ENSPTRG00000005756) #33	ENSPTRG00000048008 ##34	UBE2L5 (ENSPTRG00000050842)
Bonobo	MODERN SPECIES	4	SMAD9 (ENSPPAG00000029124) #7	RFXAP (ENSPPAG00000028456) #8	SERTM1 (ENSPPAG00000006727) #9	CCNA1 (ENSPPAG00000042674) #10	SPART (ENSPPAG00000038329) #11	CCDC169 (ENSPPAG00000029270) #12	SOHLH2 (ENSPPAG00000025183) #13	DCLK1 (ENSPPAG00000038110) #14	MAB21L1 (ENSPPAG00000032980) #16	NBEA (ENSPPAG00000001485) #15	RFC3 (ENSPPAG00000031926) #17	STARD13 (ENSPPAG00000038509) #19	KL (ENSPPAG00000030075) #20	PDS5B (ENSPPAG00000001775) #21	ENSPPAG00000024500	ENSPPAG00000040613 #22	ENSPPAG00000021320	N4BP2L1 (ENSPPAG00000040605) #23	BRCA2 (ENSPPAG00000002166) #24	ZAR1L (ENSPPAG00000036799) #25	ENSPPAG00000029942	FRY (ENSPPAG00000039014) #26	RXFP2 (ENSPPAG00000031019) #27	B3GLCT (ENSPPAG00000029099) #28	HSPH1 (ENSPPAG00000012606) #29	TEX26 (ENSPPAG00000008979) #30	MEDAG (ENSPPAG00000035081) #31	ENSPPAG00000033826 #32	USPL1 (ENSPPAG00000032740) #33	ENSPPAG00000030148 ##34	UBE2L5 (ENSPPAG00000032233)
Euarchontoglires_A	ANCESTRAL SPECIES	21	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35
Glires	ANCESTRAL SPECIES	22	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35
Lagomorpha	ANCESTRAL SPECIES	111	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00940000165796	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Rabbit	MODERN SPECIES	435	ENSOCUG00000022169	ENSOCUG00000025281 #10	SPART (ENSOCUG00000017748) #11	CCDC169 (ENSOCUG00000026427) #12	SOHLH2 (ENSOCUG00000017853) #13	ENSOCUG00000039614	DCLK1 (ENSOCUG00000017848) #14	MAB21L1 (ENSOCUG00000017845) #16	NBEA (ENSOCUG00000017834) #15	ENSOCUG00000032178	ENSOCUG00000021047	RFC3 (ENSOCUG00000003624) #17	STARD13 (ENSOCUG00000011808) #19	KL (ENSOCUG00000011798) #20	PDS5B (ENSOCUG00000006624) #21	ENSOCUG00000008952 #22	BRCA2 (ENSOCUG00000016878) #24	ZAR1L (ENSOCUG00000026484) #25	ENSOCUG00000037309	FRY (ENSOCUG00000015570) #26	RXFP2 (ENSOCUG00000000751) #27	ENSOCUG00000028125	ENSOCUG00000031587	ENSOCUG00000037463	ENSOCUG00000004157	B3GLCT (ENSOCUG00000014798) #28	HSPH1 (ENSOCUG00000014773) #29	TEX26 (ENSOCUG00000016724) #30	MEDAG (ENSOCUG00000016718) #31	ALOX5AP (ENSOCUG00000008200) #32	USPL1 (ENSOCUG00000011144) #33
Rodentia	ANCESTRAL SPECIES	22	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #34	ENSGT00940000156630 #35
Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614.f #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000157034.gb	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000019407	ENSHGLG00000037840	ENSHGLG00000032619	SRP19 (ENSHGLG00000006075)	APC (ENSHGLG00000009943)	ENSHGLG00000002190	EPB41L4A (ENSHGLG00000005035)	NREP (ENSHGLG00000014854)	ENSHGLG00000039847	ENSHGLG00000039605	ENSHGLG00000037243	CAMK4 (ENSHGLG00000011480)	WDR36 (ENSHGLG00000008804)	ENSHGLG00000049741	SLC25A46 (ENSHGLG00000038366)	ENSHGLG00000039748 #22	ENSHGLG00000040969	ENSHGLG00000010153	ENSHGLG00000043105	ENSHGLG00000043578	MAN2A1 (ENSHGLG00000010545)	PJA2 (ENSHGLG00000014312)	ENSHGLG00000031954	ENSHGLG00000006933	FBXL17 (ENSHGLG00000039745)	ENSHGLG00000036172	EFNA5 (ENSHGLG00000014327)	ENSHGLG00000042145	NUDT12 (ENSHGLG00000040400)	ENSHGLG00000037789	ENSHGLG00000047321
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000007611	TASL (ENSHGLG00000007921)	ENSHGLG00000037800	NR0B1 (ENSHGLG00000008237)	ENSHGLG00000034773	ENSHGLG00000021277	ENSHGLG00000037698	IL1RAPL1 (ENSHGLG00000005303)	ENSHGLG00000045692	ENSHGLG00000034575	ENSHGLG00000044951	ENSHGLG00000046672	ENSHGLG00000020590	ENSHGLG00000047315	ENSHGLG00000037561	ENSHGLG00000037959 #22	ENSHGLG00000035322	ENSHGLG00000048980	ENSHGLG00000043694	ENSHGLG00000002944	FTSJ1 (ENSHGLG00000003132)	PORCN (ENSHGLG00000001865)	EBP (ENSHGLG00000003626)	ENSHGLG00000043943	TBC1D25 (ENSHGLG00000005178)	ENSHGLG00000042246	WDR13 (ENSHGLG00000013774)	ENSHGLG00000037346	ENSHGLG00000019572	SUV39H1 (ENSHGLG00000007605)	ENSHGLG00000008268
Naked mole-rat female	MODERN SPECIES	2	ENSHGLG00000003703	ENSHGLG00000037090	ENSHGLG00000003756 #14	MAB21L1 (ENSHGLG00000035394) #16	ENSHGLG00000004608 #15	ENSHGLG00000013996	ENSHGLG00000021428	ENSHGLG00000019417 #17	ENSHGLG00000021355	ENSHGLG00000032772	ENSHGLG00000018786 #19	KL (ENSHGLG00000005334) #20	ENSHGLG00000006974	PDS5B (ENSHGLG00000006670) #21	ENSHGLG00000018160	ENSHGLG00000039341 #22	N4BP2L1 (ENSHGLG00000006971) #23	BRCA2 (ENSHGLG00000008590) #24	ZAR1L (ENSHGLG00000006253) #25	ENSHGLG00000041019	ENSHGLG00000009415 #26	ENSHGLG00000036768	ENSHGLG00000009276 #27	ENSHGLG00000002160	ENSHGLG00000006352	ENSHGLG00000018220	ENSHGLG00000047678	ENSHGLG00000013471 #28	ENSHGLG00000039932	HSPH1 (ENSHGLG00000006908) #29	TEX26 (ENSHGLG00000018916) #30
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614.f #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000157034.gb	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35
Guinea pig	MODERN SPECIES	6	SUPT20H (ENSCPOG00000004452)	EXOSC8 (ENSCPOG00000004450)	ALG5 (ENSCPOG00000004447)	ENSCPOG00000010255	RFXAP (ENSCPOG00000010243) #8	CCNA1 (ENSCPOG00000002606) #10	SPART (ENSCPOG00000000296) #11	CCDC169 (ENSCPOG00000037354) #12	ENSCPOG00000033603	DCLK1 (ENSCPOG00000005030) #14	NBEA (ENSCPOG00000004513) #15	RFC3 (ENSCPOG00000008739) #17	STARD13 (ENSCPOG00000005976) #19	KL (ENSCPOG00000002058) #20	PDS5B (ENSCPOG00000033286) #21	ENSCPOG00000038887 #22	N4BP2L1 (ENSCPOG00000003366) #23	BRCA2 (ENSCPOG00000005153) #24	FRY (ENSCPOG00000003917) #26	RXFP2 (ENSCPOG00000009157) #27	B3GLCT (ENSCPOG00000007455) #28	ENSCPOG00000035490	ENSCPOG00000007441 #29	MEDAG (ENSCPOG00000003921) #31	ALOX5AP (ENSCPOG00000032690) #32	USPL1 (ENSCPOG00000009937) #33	HMGB1 (ENSCPOG00000031835) ##34	KATNAL1 (ENSCPOG00000000804) #35	UBL3 (ENSCPOG00000036242) #36	SLC7A1 (ENSCPOG00000005590) #37	ENSCPOG00000005581
Hystricomorpha_b	ANCESTRAL SPECIES	48	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614.f #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000157034.gb	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35
Degu	MODERN SPECIES	79	CCDC169 (ENSODEG00000006643) #12	ENSODEG00000007164	DCLK1 (ENSODEG00000006680) #14	ENSODEG00000019680	ENSODEG00000006935	MAB21L1 (ENSODEG00000019299) #16	ENSODEG00000008552	NBEA (ENSODEG00000006275) #15	MCM5 (ENSODEG00000005912)	ENSODEG00000007112 #17	STARD13 (ENSODEG00000006691) #19	KL (ENSODEG00000006590) #20	ENSODEG00000019263	PDS5B (ENSODEG00000006819) #21	ENSODEG00000006412	N4BP2L2 (ENSODEG00000006521) #22	ENSODEG00000005727 #23	ENSODEG00000009214	ENSODEG00000007088 #24	ZAR1L (ENSODEG00000005981) #25	FRY (ENSODEG00000006572) #26	RXFP2 (ENSODEG00000008146) #27	B3GLCT (ENSODEG00000005559) #28	ENSODEG00000019264	HSPH1 (ENSODEG00000005577) #29	ENSODEG00000006248	MEDAG (ENSODEG00000005967) #31	ALOX5AP (ENSODEG00000005645) #32	USPL1 (ENSODEG00000007176) #33	ENSODEG00000006120 ##34	KATNAL1 (ENSODEG00000005926) #35
Long-tailed chinchilla	MODERN SPECIES	138	ALG5 (ENSCLAG00000003827)	ENSCLAG00000004108	RFXAP (ENSCLAG00000005593) #8	CCNA1 (ENSCLAG00000004772) #10	SPART (ENSCLAG00000005026) #11	CCDC169 (ENSCLAG00000005286) #12	SOHLH2 (ENSCLAG00000005516) #13	DCLK1 (ENSCLAG00000006827) #14	NBEA (ENSCLAG00000005089) #15	MAB21L1 (ENSCLAG00000017521) #16	ENSCLAG00000003179	RFC3 (ENSCLAG00000003664) #17	STARD13 (ENSCLAG00000003814) #19	KL (ENSCLAG00000004704) #20	PDS5B (ENSCLAG00000003381) #21	ENSCLAG00000004607 #22	N4BP2L1 (ENSCLAG00000004721) #23	BRCA2 (ENSCLAG00000005830) #24	ZAR1L (ENSCLAG00000004947) #25	FRY (ENSCLAG00000005912) #26	RXFP2 (ENSCLAG00000005864) #27	B3GLCT (ENSCLAG00000003709) #28	ENSCLAG00000017567	HSPH1 (ENSCLAG00000004472) #29	ENSCLAG00000004125	TEX26 (ENSCLAG00000005302) #30	MEDAG (ENSCLAG00000005352) #31	ALOX5AP (ENSCLAG00000005620) #32	USPL1 (ENSCLAG00000003130) #33	HMGB1 (ENSCLAG00000003343) ##34	KATNAL1 (ENSCLAG00000003501) #35
Sciuridae	ANCESTRAL SPECIES	34	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00940000160886.q.b.a	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35
Eurasian red squirrel	MODERN SPECIES	13	SERTM1 (ENSSVLG00005009166) #9	CCNA1 (ENSSVLG00005009186) #10	SPART (ENSSVLG00005009224) #11	CCDC169 (ENSSVLG00005009253) #12	SOHLH2 (ENSSVLG00005009335) #13	DCLK1 (ENSSVLG00005009476) #14	NBEA (ENSSVLG00005010027) #15	MAB21L1 (ENSSVLG00005012010) #16	ENSSVLG00005012035	ENSSVLG00005012094 #17	STARD13 (ENSSVLG00005012412) #19	KL (ENSSVLG00005012761) #20	ENSSVLG00005012836	ENSSVLG00005012874	PDS5B (ENSSVLG00005012920) #21	ENSSVLG00005013108 #22	N4BP2L1 (ENSSVLG00005013256) #23	BRCA2 (ENSSVLG00005015076) #24	ZAR1L (ENSSVLG00005019599) #25	FRY (ENSSVLG00005019945) #26	ENSSVLG00005020793	RXFP2 (ENSSVLG00005020815) #27	B3GLCT (ENSSVLG00005021156) #28	HSPH1 (ENSSVLG00005021367) #29	ENSSVLG00005021904	TEX26 (ENSSVLG00005022083) #30	MEDAG (ENSSVLG00005022152) #31	ALOX5AP (ENSSVLG00005022177) #32	USPL1 (ENSSVLG00005022232) #33	ENSSVLG00005022302 ##34	KATNAL1 (ENSSVLG00005022343) #35
Marmotini	ANCESTRAL SPECIES	29	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00940000160886.q.b.a	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.b.b ##34	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #34
Alpin marmot	MODERN SPECIES	13	CCNA1 (ENSMMMG00000022623) #10	SPART (ENSMMMG00000022611) #11	CCDC169 (ENSMMMG00000022606) #12	SOHLH2 (ENSMMMG00000022599) #13	ENSMMMG00000022597	DCLK1 (ENSMMMG00000022381) #14	MAB21L1 (ENSMMMG00000022365) #16	ENSMMMG00000022359	NBEA (ENSMMMG00000022327) #15	RFC3 (ENSMMMG00000022269) #17	STARD13 (ENSMMMG00000022235) #19	KL (ENSMMMG00000022232) #20	PDS5B (ENSMMMG00000022194) #21	ENSMMMG00000022169	ENSMMMG00000022166	N4BP2L2 (ENSMMMG00000022165) #22	ENSMMMG00000022143	N4BP2L1 (ENSMMMG00000022139) #23	BRCA2 (ENSMMMG00000022103) #24	ZAR1L (ENSMMMG00000022098) #25	FRY (ENSMMMG00000022076) #26	RXFP2 (ENSMMMG00000022035) #27	B3GLCT (ENSMMMG00000022023) #28	HSPH1 (ENSMMMG00000021945) #29	ENSMMMG00000021936	TEX26 (ENSMMMG00000021931) #30	MEDAG (ENSMMMG00000021928) #31	ALOX5AP (ENSMMMG00000021924) #32	ENSMMMG00000021912 #33	ENSMMMG00000021875 ##34	KATNAL1 (ENSMMMG00000021861) #35
Marmotini_b	ANCESTRAL SPECIES	39	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00940000160886.q.b.a	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #34	ENSGT00940000156630 #35
Arctic ground squirrel	MODERN SPECIES	980																N4BP2L2 (ENSUPAG00010008586) #22	ENSUPAG00010008575	N4BP2L1 (ENSUPAG00010008564) #23
Squirrel	MODERN SPECIES	72	ALG5 (ENSSTOG00000002027)	SMAD9 (ENSSTOG00000007103) #7	RFXAP (ENSSTOG00000028189) #8	ENSSTOG00000020448	SERTM1 (ENSSTOG00000020432) #9	CCNA1 (ENSSTOG00000003628) #10	SPART (ENSSTOG00000014775) #11	CCDC169 (ENSSTOG00000033458) #12	DCLK1 (ENSSTOG00000012243) #14	MAB21L1 (ENSSTOG00000009634) #16	NBEA (ENSSTOG00000012208) #15	RFC3 (ENSSTOG00000000378) #17	STARD13 (ENSSTOG00000006622) #19	KL (ENSSTOG00000024168) #20	PDS5B (ENSSTOG00000001429) #21	ENSSTOG00000030222 #22	N4BP2L1 (ENSSTOG00000005584) #23	ENSSTOG00000005517 #24	ZAR1L (ENSSTOG00000005506) #25	FRY (ENSSTOG00000013718) #26	RXFP2 (ENSSTOG00000010636) #27	B3GLCT (ENSSTOG00000001710) #28	HSPH1 (ENSSTOG00000001700) #29	ENSSTOG00000020892	MEDAG (ENSSTOG00000003534) #31	ALOX5AP (ENSSTOG00000010915) #32	USPL1 (ENSSTOG00000028023) #33	ENSSTOG00000000443 #34	KATNAL1 (ENSSTOG00000008802) #35	UBL3 (ENSSTOG00000012777) #36	SLC7A1 (ENSSTOG00000012771) #37
Rodentia_B	ANCESTRAL SPECIES	25	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00900000143638	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #34	ENSGT00940000156630 #35
Kangaroo rat	MODERN SPECIES	421													Stard13 (ENSDORG00000014869) #19	Kl (ENSDORG00000014867) #20	Pds5b (ENSDORG00000007529) #21	ENSDORG00000023870 #22	N4bp2l1 (ENSDORG00000025880) #23	Zar1l (ENSDORG00000023723) #25	Fry (ENSDORG00000007045) #26	Rxfp2 (ENSDORG00000013648) #27	B3glct (ENSDORG00000011835) #28	ENSDORG00000014903 #29	Wdr95 (ENSDORG00000026485)	ENSDORG00000008558 #30	Medag (ENSDORG00000008557) #31	Alox5ap (ENSDORG00000006041) #32	Uspl1 (ENSDORG00000007790) #33	ENSDORG00000027930 #34	Katnal1 (ENSDORG00000012794) #35	Ubl3 (ENSDORG00000026903) #36	ENSDORG00000026706
Myomorpha	ANCESTRAL SPECIES	46	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b.ib #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00900000143638	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #34	ENSGT00940000156630 #35
Lesser Egyptian jerboa	MODERN SPECIES	73	ENSJJAG00000022752	Alg5 (ENSJJAG00000023125)	Smad9 (ENSJJAG00000010404)	Ccna1 (ENSJJAG00000024004) #10	Sertm1 (ENSJJAG00000012642) #9	Spg20 (ENSJJAG00000023993) #11	Ccdc169 (ENSJJAG00000021324) #12	Dclk1 (ENSJJAG00000016300) #14	Mab21l1 (ENSJJAG00000012819) #16	Nbea (ENSJJAG00000016039) #15	ENSJJAG00000020715	Rfc3 (ENSJJAG00000013164) #17	Stard13 (ENSJJAG00000016848) #19	Kl (ENSJJAG00000004906) #20	Pds5b (ENSJJAG00000023181) #21	ENSJJAG00000007334 #22	N4bp2l1 (ENSJJAG00000022228) #23	ENSJJAG00000024080 #24	Zar1l (ENSJJAG00000023916) #25	Fry (ENSJJAG00000021715) #26	Rxfp2 (ENSJJAG00000022592) #27	B3glct (ENSJJAG00000022078) #28	Hsph1 (ENSJJAG00000000436) #29	Wdr95 (ENSJJAG00000015306)	Tex26 (ENSJJAG00000007098) #30	Medag (ENSJJAG00000017396) #31	Alox5ap (ENSJJAG00000004614) #32	ENSJJAG00000014544 #33	ENSJJAG00000000696 #34	Katnal1 (ENSJJAG00000011429) #35	Ubl3 (ENSJJAG00000016514) #36
Muroidea	ANCESTRAL SPECIES	68												ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b.ib #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00900000143638	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #34	ENSGT00940000156630 #35
Muroidea_A	ANCESTRAL SPECIES	27	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00950000182788.a.b.b.b.e	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b.ib #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00900000143638	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #34	ENSGT00940000156630 #35
Cricetidae	ANCESTRAL SPECIES	27	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00950000182788.a.b.b.b.e	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b.ib #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00900000143638	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #34	ENSGT00940000156630 #35
Cricetidae_B	ANCESTRAL SPECIES	49	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00950000182788.a.b.b.b.e	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b.ib #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00900000143638	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #34	ENSGT00940000156630 #35
Northern American deer mouse	MODERN SPECIES	15	ENSPEMG00000026248	Camsap3 (ENSPEMG00000023059)	Pnpla6 (ENSPEMG00000011542)	Mcoln1 (ENSPEMG00000023945)	Zfp358 (ENSPEMG00000013331)	Tex45 (ENSPEMG00000000325)	Pex11g (ENSPEMG00000016020)	Arhgef18 (ENSPEMG00000012546)	ENSPEMG00000007811	Insr (ENSPEMG00000016970)	Rfc3 (ENSPEMG00000011785) #17	Stard13 (ENSPEMG00000012080) #19	Kl (ENSPEMG00000009641) #20	Pds5b (ENSPEMG00000012114) #21	ENSPEMG00000018171	N4bp2l2 (ENSPEMG00000010796) #22	N4bp2l1 (ENSPEMG00000027409) #23	Brca2 (ENSPEMG00000000801) #24	Zar1l (ENSPEMG00000008692) #25	Fry (ENSPEMG00000002240) #26	ENSPEMG00000029870	ENSPEMG00000029532	Zscan25 (ENSPEMG00000024325)	ENSPEMG00000014368
Prairie vole	MODERN SPECIES	185												Rfc3 (ENSMOCG00000001698) #17	ENSMOCG00000017528 #19	Kl (ENSMOCG00000013288) #20	Pds5b (ENSMOCG00000002537) #21	N4bp2l2 (ENSMOCG00000017238) #22	ENSMOCG00000000188	ENSMOCG00000016292 #23	Brca2 (ENSMOCG00000000238) #24	Zar1l (ENSMOCG00000003640) #25
Cricetinae	ANCESTRAL SPECIES	19	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00950000182788.a.b.b.b.e	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b.ib #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37
Golden Hamster	MODERN SPECIES	762													Stard13 (ENSMAUG00000001769) #19	Kl (ENSMAUG00000019779) #20	Pds5b (ENSMAUG00000000343) #21	N4bp2l2 (ENSMAUG00000011937) #22	N4bp2l1 (ENSMAUG00000017134) #23	ENSMAUG00000019853 #24	ENSMAUG00000010577 #24	ENSMAUG00000012032 #25	ENSMAUG00000013210 #26	ENSMAUG00000008801 #26	Rxfp2 (ENSMAUG00000017558) #27	B3glct (ENSMAUG00000018787) #28	Hsph1 (ENSMAUG00000002443) #29	Wdr95 (ENSMAUG00000014604)	Tex26 (ENSMAUG00000016345) #30	Medag (ENSMAUG00000009604) #31	Alox5ap (ENSMAUG00000012262) #32	ENSMAUG00000013736 #33	ENSMAUG00000017646
Chinese hamster chok1gshd	MODERN SPECIES	130	Pnpla6 (ENSCGRG00001009465)	Mcoln1 (ENSCGRG00001021295)	Zfp358 (ENSCGRG00001003945)	Tex45 (ENSCGRG00001018974)	Pex11g (ENSCGRG00001015493)	Arhgef18 (ENSCGRG00001023194)	ENSCGRG00001024892	Insr (ENSCGRG00001016526)	ENSCGRG00001023631	ENSCGRG00001024583	ENSCGRG00001014298	Rfc3 (ENSCGRG00001017292) #17	Stard13 (ENSCGRG00001013165) #19	Kl (ENSCGRG00001023796) #20	Pds5b (ENSCGRG00001010829) #21	N4bp2l2 (ENSCGRG00001023249) #22	N4bp2l1 (ENSCGRG00001015340) #23	Brca2 (ENSCGRG00001017867) #24	Zar1l (ENSCGRG00001012256) #25	Fry (ENSCGRG00001011470) #26	Rxfp2 (ENSCGRG00001014494) #27	B3glct (ENSCGRG00001024270) #28	Hsph1 (ENSCGRG00001021270) #29	Wdr95 (ENSCGRG00001015579)	Tex26 (ENSCGRG00001015836) #30	Medag (ENSCGRG00001024417) #31	ENSCGRG00001025063	Alox5ap (ENSCGRG00001018470) #32	ENSCGRG00001018342 #33	Katnal1 (ENSCGRG00001024027) #35	Ubl3 (ENSCGRG00001002093) #36
Murinae	ANCESTRAL SPECIES	28	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00950000182788.a.b.b.b.e	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b.ib #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00960000191336	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #34	ENSGT00940000156630 #35
Mus	ANCESTRAL SPECIES	17										ENSGT00550000075006 #17	ENSGT00950000182788.a.b.b.b.e	ENSGT00950000183061.a.a.b.hb #19	ENSGT00950000183061.a.a.b.ib #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00960000191336	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #34	ENSGT00940000156630 #35
Mus_A	ANCESTRAL SPECIES	6										ENSGT00550000075006 #17	ENSGT00950000182788.a.b.b.b.e	ENSGT00950000183061.a.a.b.hb #19	ENSGT00950000183061.a.a.b.ib #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00960000191336	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #34	ENSGT00940000156630 #35
Mus_B	ANCESTRAL SPECIES	4										ENSGT00550000075006 #17	ENSGT00950000182788.a.b.b.b.e	ENSGT00950000183061.a.a.b.hb #19	ENSGT00950000183061.a.a.b.ib #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00960000191336	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35
Mouse	MODERN SPECIES	14										Rfc3 (ENSMUSG00000033970) #17	Vmn2r18 (ENSMUSG00000091794)	Gm42906 (ENSMUSG00000107011)	Stard13 (ENSMUSG00000016128) #19	Kl (ENSMUSG00000058488) #20	Pds5b (ENSMUSG00000034021) #21	N4bp2l2 (ENSMUSG00000029655) #22	N4bp2l1 (ENSMUSG00000041132) #23	Brca2 (ENSMUSG00000041147) #24	Zar1l (ENSMUSG00000056586) #25	Fry (ENSMUSG00000056602) #26	Rxfp2 (ENSMUSG00000053368) #27	B3glct (ENSMUSG00000051950) #28	Hsph1 (ENSMUSG00000029657) #29	Wdr95 (ENSMUSG00000029658)	Tex26 (ENSMUSG00000029660) #30	Medag (ENSMUSG00000029659) #31	Alox5ap (ENSMUSG00000060063) #32	Uspl1 (ENSMUSG00000041264) #33	Hmgb1 (ENSMUSG00000066551) ##34	Katnal1 (ENSMUSG00000041298) #35	Ubl3 (ENSMUSG00000001687) #36
Mus_C	ANCESTRAL SPECIES	4										ENSGT00550000075006 #17	ENSGT00950000182788.a.b.b.b.e	ENSGT00950000183061.a.a.b.hb #19	ENSGT00950000183061.a.a.b.ib #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00960000191336	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a.n ##34	ENSGT00940000156630 #35
spretus	MODERN SPECIES	14										Rfc3 (MGP_SPRETEiJ_G0029066) #17	MGP_SPRETEiJ_G0029065	MGP_SPRETEiJ_G0029064 #19	Stard13 (MGP_SPRETEiJ_G0029063) #19	Kl (MGP_SPRETEiJ_G0029062) #20	Pds5b (MGP_SPRETEiJ_G0029061) #21	N4bp2l2 (MGP_SPRETEiJ_G0029060) #22	N4bp2l1 (MGP_SPRETEiJ_G0029059) #23	Brca2 (MGP_SPRETEiJ_G0029058) #24	Zar1l (MGP_SPRETEiJ_G0029057) #25	Fry (MGP_SPRETEiJ_G0029056) #26	Rxfp2 (MGP_SPRETEiJ_G0029055) #27	B3glct (MGP_SPRETEiJ_G0029054) #28	Hsph1 (MGP_SPRETEiJ_G0029053) #29	Wdr95 (MGP_SPRETEiJ_G0029052)	Tex26 (MGP_SPRETEiJ_G0029051) #30	Medag (MGP_SPRETEiJ_G0029050) #31	Alox5ap (MGP_SPRETEiJ_G0029049) #32	Uspl1 (MGP_SPRETEiJ_G0029048) #33	MGP_SPRETEiJ_G0029047 #34	MGP_SPRETEiJ_G0029046 #35	MGP_SPRETEiJ_G0029045 #35
Steppe mouse	MODERN SPECIES	3364										Rfc3 (ENSMSIG00000021769) #17	Vmn2r18 (ENSMSIG00000021788)	Stard13 (ENSMSIG00000021835) #19	Kl (ENSMSIG00000021957) #20	Pds5b (ENSMSIG00000021971) #21	ENSMSIG00000022219	ENSMSIG00000022244 #22	ENSMSIG00000022281 #23	Brca2 (ENSMSIG00000022300) #24	Zar1l (ENSMSIG00000022351) #25	Fry (ENSMSIG00000022362) #26	Rxfp2 (ENSMSIG00000022574) #27	B3glct (ENSMSIG00000022847) #28	ENSMSIG00000022866	Hsph1 (ENSMSIG00000022895) #29	Wdr95 (ENSMSIG00000023065)	Tex26 (ENSMSIG00000023128) #30	Medag (ENSMSIG00000023188) #31	ENSMSIG00000023226	Alox5ap (ENSMSIG00000023243) #32	Uspl1 (ENSMSIG00000023285) #33	ENSMSIG00000023332 ##34
Ryukyu mouse	MODERN SPECIES	14											Rfc3 (MGP_CAROLIEiJ_G0028067) #17	MGP_CAROLIEiJ_G0028066 #19	Stard13 (MGP_CAROLIEiJ_G0028065) #19	Kl (MGP_CAROLIEiJ_G0028064) #20	Pds5b (MGP_CAROLIEiJ_G0028063) #21	N4bp2l2 (MGP_CAROLIEiJ_G0028062) #22	N4bp2l1 (MGP_CAROLIEiJ_G0028061) #23	Brca2 (MGP_CAROLIEiJ_G0028060) #24	Zar1l (MGP_CAROLIEiJ_G0028059) #25	MGP_CAROLIEiJ_G0028058 #26	Rxfp2 (MGP_CAROLIEiJ_G0028057) #27	B3glct (MGP_CAROLIEiJ_G0028056) #28	Hsph1 (MGP_CAROLIEiJ_G0028055) #29	Wdr95 (MGP_CAROLIEiJ_G0028054)	Tex26 (MGP_CAROLIEiJ_G0028053) #30	Medag (MGP_CAROLIEiJ_G0028052) #31	MGP_CAROLIEiJ_G0028051 #32	Uspl1 (MGP_CAROLIEiJ_G0028050) #33	MGP_CAROLIEiJ_G0028049 #34	MGP_CAROLIEiJ_G0028048 #35	MGP_CAROLIEiJ_G0028047 #35
Shrew mouse	MODERN SPECIES	15										Rfc3 (MGP_PahariEiJ_G0024634) #17	MGP_PahariEiJ_G0024633	MGP_PahariEiJ_G0024632 #19	Stard13 (MGP_PahariEiJ_G0024631) #19	Kl (MGP_PahariEiJ_G0024630) #20	Pds5b (MGP_PahariEiJ_G0024629) #21	N4bp2l2 (MGP_PahariEiJ_G0024628) #22	N4bp2l1 (MGP_PahariEiJ_G0024627) #23	MGP_PahariEiJ_G0024626 #24	Zar1l (MGP_PahariEiJ_G0024625) #25	Fry (MGP_PahariEiJ_G0024624) #26	Rxfp2 (MGP_PahariEiJ_G0024623) #27	B3glct (MGP_PahariEiJ_G0024622) #28	Hsph1 (MGP_PahariEiJ_G0024621) #29	MGP_PahariEiJ_G0024620	Tex26 (MGP_PahariEiJ_G0024619) #30	Medag (MGP_PahariEiJ_G0024618) #31	Alox5ap (MGP_PahariEiJ_G0024617) #32	Uspl1 (MGP_PahariEiJ_G0024616) #33	MGP_PahariEiJ_G0024615 #34	MGP_PahariEiJ_G0024614 #35	MGP_PahariEiJ_G0024613 #35
Rat	MODERN SPECIES	3	Pnpla6 (ENSRNOG00000000977)	Mcoln1 (ENSRNOG00000000975)	Zfp358 (ENSRNOG00000000974)	Tex45 (ENSRNOG00000000973)	Pex11g (ENSRNOG00000028100)	Arhgef18 (ENSRNOG00000028090)	Insr (ENSRNOG00000029986)	ENSRNOG00000068853	ENSRNOG00000066843	ENSRNOG00000071056	Rfc3 (ENSRNOG00000001088) #17	Stard13 (ENSRNOG00000001090) #19	Kl (ENSRNOG00000001092) #20	AABR07034928.1 (ENSRNOG00000034215)	Pds5b (ENSRNOG00000001098) #21	N4bp2l2 (ENSRNOG00000001108) #22	N4bp2l1 (ENSRNOG00000059322) #23	Brca2 (ENSRNOG00000001111) #24	Zar1l (ENSRNOG00000051294) #25
Upper Galilee mountains blind mole rat	MODERN SPECIES	1878											ENSNGAG00000004745	Rfc3 (ENSNGAG00000023429) #17	Stard13 (ENSNGAG00000024315) #19	Kl (ENSNGAG00000013711) #20	Pds5b (ENSNGAG00000021582) #21	ENSNGAG00000023894 #22	ENSNGAG00000024018 #23	Brca2 (ENSNGAG00000023032) #24	Zar1l (ENSNGAG00000012663) #25	Fry (ENSNGAG00000020982) #26	Rxfp2 (ENSNGAG00000024348) #27	B3glct (ENSNGAG00000021468) #28	ENSNGAG00000014918 #29	Wdr95 (ENSNGAG00000008428)	ENSNGAG00000021744	Tex26 (ENSNGAG00000016306) #30	Medag (ENSNGAG00000021713) #31	Alox5ap (ENSNGAG00000010455) #32	Uspl1 (ENSNGAG00000021450) #33	ENSNGAG00000020735 ##34	Katnal1 (ENSNGAG00000018344) #35
Laurasiatheria	ANCESTRAL SPECIES	20	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00390000017100	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00740000117041	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32
Laurasiatheria_a	ANCESTRAL SPECIES	21	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT01030000235240	ENSGT00940000165796	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00390000017100	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00740000117041	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32
Artiodactyla	ANCESTRAL SPECIES	21	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT01030000235240	ENSGT00940000165796	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
Suina	ANCESTRAL SPECIES	29	ENSGT00940000153481.C	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Pig	MODERN SPECIES	2	SPART (ENSSSCG00000024635) #11	ENSSSCG00000026564 #12	SOHLH2 (ENSSSCG00000026164) #13	DCLK1 (ENSSSCG00000033919) #14	MAB21L1 (ENSSSCG00000009351) #16	ENSSSCG00000046978	ENSSSCG00000051344	NBEA (ENSSSCG00000034348) #15	ENSSSCG00000042357	RFC3 (ENSSSCG00000009349) #17	ENSSSCG00000041722	ENSSSCG00000046579 ##19	ENSSSCG00000009348 #19	ENSSSCG00000009347 #20	PDS5B (ENSSSCG00000009345) #21	ENSSSCG00000009341 #22	N4BP2L1 (ENSSSCG00000040566) #23	BRCA2 (ENSSSCG00000029039) #24	ZAR1L (ENSSSCG00000034291) #25	FRY (ENSSSCG00000009338) #26	RXFP2 (ENSSSCG00000009336) #27	B3GLCT (ENSSSCG00000009335) #28	HSPH1 (ENSSSCG00000009334) #29	ENSSSCG00000009333	TEX26 (ENSSSCG00000046261) #30	MEDAG (ENSSSCG00000009331) #31	ALOX5AP (ENSSSCG00000009330) #32	USPL1 (ENSSSCG00000028065) #33	ENSSSCG00000009327 ##34	KATNAL1 (ENSSSCG00000009326) #35	ENSSSCG00000035992 #36
Chacoan peccary	MODERN SPECIES	216	ALG5 (ENSCWAG00000008270)	SMAD9 (ENSCWAG00000008375) #7	RFXAP (ENSCWAG00000008462) #8	SERTM1 (ENSCWAG00000008483) #9	CCNA1 (ENSCWAG00000008505) #10	SPART (ENSCWAG00000008593) #11	CCDC169 (ENSCWAG00000008667) #12	SOHLH2 (ENSCWAG00000008782) #13	DCLK1 (ENSCWAG00000008946) #14	NBEA (ENSCWAG00000009430) #15	MAB21L1 (ENSCWAG00000010979) #16	RFC3 (ENSCWAG00000010993) #17	STARD13 (ENSCWAG00000011055) #19	KL (ENSCWAG00000011188) #20	PDS5B (ENSCWAG00000011260) #21	ENSCWAG00000011334 #22	N4BP2L1 (ENSCWAG00000011599) #23	BRCA2 (ENSCWAG00000011814) #24	ZAR1L (ENSCWAG00000012109) #25	FRY (ENSCWAG00000012346) #26	RXFP2 (ENSCWAG00000016378) #27	ENSCWAG00000016656	B3GLCT (ENSCWAG00000016685) #28	HSPH1 (ENSCWAG00000016864) #29	ENSCWAG00000017090	TEX26 (ENSCWAG00000017184) #30	MEDAG (ENSCWAG00000017233) #31	ALOX5AP (ENSCWAG00000017261) #32	USPL1 (ENSCWAG00000017300) #33	HMGB1 (ENSCWAG00000017323) ##34	KATNAL1 (ENSCWAG00000017366) #35
Artiodactyla_a	ANCESTRAL SPECIES	22	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT01030000235240	ENSGT00940000165796.a	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
Camelidae	ANCESTRAL SPECIES	14	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00940000163092 #7	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00390000017100	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
Arabian camel	MODERN SPECIES	5	RFXAP (ENSCDRG00005020867) #8	CCNA1 (ENSCDRG00005020852) #10	SPART (ENSCDRG00005020836) #11	CCDC169 (ENSCDRG00005020822) #12	SOHLH2 (ENSCDRG00005020803) #13	DCLK1 (ENSCDRG00005020769) #14	MAB21L1 (ENSCDRG00005020760) #16	ENSCDRG00005020737 #15	ENSCDRG00005020707 #15	ENSCDRG00005020676	RFC3 (ENSCDRG00005020667) #17	STARD13 (ENSCDRG00005020653) #19	KL (ENSCDRG00005020640) #20	ENSCDRG00005020629	PDS5B (ENSCDRG00005020596) #21	ENSCDRG00005020567 #22	ENSCDRG00005020560	ENSCDRG00005020557	ENSCDRG00005020554 #23	BRCA2 (ENSCDRG00005006568) #24	ZAR1L (ENSCDRG00005006229) #25	FRY (ENSCDRG00005005711) #26	RXFP2 (ENSCDRG00005005532) #27	B3GLCT (ENSCDRG00005005450) #28	HSPH1 (ENSCDRG00005005202) #29	TEX26 (ENSCDRG00005005163) #30	MEDAG (ENSCDRG00005005141) #31	ALOX5AP (ENSCDRG00005005116) #32	USPL1 (ENSCDRG00005005085) #33	HMGB1 (ENSCDRG00005005045) ##34	KATNAL1 (ENSCDRG00005005025) #35
Artiodactyla_b	ANCESTRAL SPECIES	22	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT01030000235240	ENSGT00940000165796.a	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
Cetacea	ANCESTRAL SPECIES	20	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT01030000235240	ENSGT00940000165796.a	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000160240.e.b	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00900000143638	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34
Odontoceti	ANCESTRAL SPECIES	21	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT01030000235240	ENSGT00940000165796.a	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000160240.e.b	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00900000143638	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34
Odontoceti_a	ANCESTRAL SPECIES	24	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT01030000235240	ENSGT00940000165796.a	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000160240.e.b	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00900000143638	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34
Odontoceti_b	ANCESTRAL SPECIES	21	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT01030000235240	ENSGT00940000165796.a	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000160240.e.b	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00900000143638	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
Monodontidae	ANCESTRAL SPECIES	15	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT01030000235240	ENSGT00940000165796.a	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000160240.f	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00900000143638	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Narwhal	MODERN SPECIES	315	SERTM1 (ENSMMNG00015016606) #9	CCNA1 (ENSMMNG00015016619) #10	SPART (ENSMMNG00015016660) #11	ENSMMNG00015016688	ENSMMNG00015016716	SOHLH2 (ENSMMNG00015016766) #13	DCLK1 (ENSMMNG00015016839) #14	ENSMMNG00015017020	NBEA (ENSMMNG00015017286) #15	MAB21L1 (ENSMMNG00015018533) #16	RFC3 (ENSMMNG00015018576) #17	ENSMMNG00015018614	STARD13 (ENSMMNG00015018643) #19	KL (ENSMMNG00015018718) #20	PDS5B (ENSMMNG00015018806) #21	ENSMMNG00015019024 #22	N4BP2L1 (ENSMMNG00015019137) #23	BRCA2 (ENSMMNG00015019201) #24	ZAR1L (ENSMMNG00015019227) #25	FRY (ENSMMNG00015019379) #26	RXFP2 (ENSMMNG00015019687) #27	B3GLCT (ENSMMNG00015019951) #28	HSPH1 (ENSMMNG00015020078) #29	MEDAG (ENSMMNG00015020156) #31	ALOX5AP (ENSMMNG00015020175) #32	USPL1 (ENSMMNG00015020212) #33	HMGB1 (ENSMMNG00015020245) ##34	KATNAL1 (ENSMMNG00015020263) #35	UBL3 (ENSMMNG00015020289) #36	SLC7A1 (ENSMMNG00015020307) #37	MTUS2 (ENSMMNG00015020336)
Beluga whale	MODERN SPECIES	29	SMAD9 (ENSDLEG00000015856)	RFXAP (ENSDLEG00000015852) #8	SERTM1 (ENSDLEG00000015847) #9	CCNA1 (ENSDLEG00000015815) #10	SPART (ENSDLEG00000015795) #11	ENSDLEG00000015775	SOHLH2 (ENSDLEG00000015732) #13	DCLK1 (ENSDLEG00000015178) #14	ENSDLEG00000015130	MAB21L1 (ENSDLEG00000015125) #16	NBEA (ENSDLEG00000009669) #15	RFC3 (ENSDLEG00000009132) #17	STARD13 (ENSDLEG00000009047) #19	KL (ENSDLEG00000008992) #20	PDS5B (ENSDLEG00000008737) #21	N4BP2L2 (ENSDLEG00000008685) #22	ENSDLEG00000008674	N4BP2L1 (ENSDLEG00000008631) #23	BRCA2 (ENSDLEG00000008330) #24	ZAR1L (ENSDLEG00000008222) #25	FRY (ENSDLEG00000005741) #26	RXFP2 (ENSDLEG00000005339) #27	B3GLCT (ENSDLEG00000005311) #28	HSPH1 (ENSDLEG00000005268) #29	ENSDLEG00000005251	MEDAG (ENSDLEG00000005244) #31	ALOX5AP (ENSDLEG00000005233) #32	USPL1 (ENSDLEG00000005228) #33	HMGB1 (ENSDLEG00000005222) ##34	KATNAL1 (ENSDLEG00000015700) #35	UBL3 (ENSDLEG00000015684) #36
Sperm whale	MODERN SPECIES	4	SMAD9 (ENSPCTG00005008843) #7	ENSPCTG00005008811 #8	SERTM1 (ENSPCTG00005008777) #9	CCNA1 (ENSPCTG00005021014) #10	SPART (ENSPCTG00005020996) #11	SOHLH2 (ENSPCTG00005020869) #13	DCLK1 (ENSPCTG00005020623) #14	ENSPCTG00005020579	MAB21L1 (ENSPCTG00005020567) #16	NBEA (ENSPCTG00005018736) #15	RFC3 (ENSPCTG00005018543) #17	ENSPCTG00005018498	STARD13 (ENSPCTG00005018420) #19	KL (ENSPCTG00005018349) #20	PDS5B (ENSPCTG00005018127) #21	N4BP2L2 (ENSPCTG00005017951) #22	N4BP2L1 (ENSPCTG00005017787) #23	BRCA2 (ENSPCTG00005017664) #24	ZAR1L (ENSPCTG00005017620) #25	FRY (ENSPCTG00005017329) #26	RXFP2 (ENSPCTG00005016820) #27	ENSPCTG00005016773	B3GLCT (ENSPCTG00005016496) #28	HSPH1 (ENSPCTG00005015496) #29	TEX26 (ENSPCTG00005015295) #30	MEDAG (ENSPCTG00005015216) #31	ALOX5AP (ENSPCTG00005015171) #32	USPL1 (ENSPCTG00005015111) #33	HMGB1 (ENSPCTG00005015034) ##34	KATNAL1 (ENSPCTG00005014985) #35	UBL3 (ENSPCTG00005014919) #36
Blue whale	MODERN SPECIES	9	ENSBMSG00010019579 #8	SERTM1 (ENSBMSG00010019566) #9	CCNA1 (ENSBMSG00010019518) #10	SPART (ENSBMSG00010019481) #11	CCDC169 (ENSBMSG00010019433) #12	SOHLH2 (ENSBMSG00010019390) #13	DCLK1 (ENSBMSG00010019247) #14	ENSBMSG00010019170	MAB21L1 (ENSBMSG00010019155) #16	NBEA (ENSBMSG00010018002) #15	RFC3 (ENSBMSG00010017887) #17	ENSBMSG00010017856	STARD13 (ENSBMSG00010017641) #19	KL (ENSBMSG00010017573) #20	PDS5B (ENSBMSG00010017541) #21	N4BP2L2 (ENSBMSG00010017489) #22	N4BP2L1 (ENSBMSG00010017398) #23	BRCA2 (ENSBMSG00010017357) #24	ZAR1L (ENSBMSG00010017318) #25	FRY (ENSBMSG00010016276) #26	RXFP2 (ENSBMSG00010015959) #27	B3GLCT (ENSBMSG00010015884) #28	HSPH1 (ENSBMSG00010015771) #29	ENSBMSG00010015688	TEX26 (ENSBMSG00010015652) #30	MEDAG (ENSBMSG00010015612) #31	ALOX5AP (ENSBMSG00010015580) #32	USPL1 (ENSBMSG00010015554) #33	HMGB1 (ENSBMSG00010015522) ##34	KATNAL1 (ENSBMSG00010015496) #35	UBL3 (ENSBMSG00010015451) #36
Pecora	ANCESTRAL SPECIES	23	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165796.a	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
Percora_a	ANCESTRAL SPECIES	25	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165796.a	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
Bovidae	ANCESTRAL SPECIES	25	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165796.a	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
Bovinae	ANCESTRAL SPECIES	29	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165796.a	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00900000143638	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34
Bos	ANCESTRAL SPECIES	28	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165796.a	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00900000143638	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34
Bos_a	ANCESTRAL SPECIES	19	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165796.a	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00900000143638	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
Wild yak	MODERN SPECIES	365											ENSBMUG00000013979 #15	RFC3 (ENSBMUG00000013862) #17	STARD13 (ENSBMUG00000013838) #19	KL (ENSBMUG00000013799) #20	PDS5B (ENSBMUG00000013763) #21	ENSBMUG00000013684 #22	N4BP2L1 (ENSBMUG00000013666) #23	BRCA2 (ENSBMUG00000013335) #24	ZAR1L (ENSBMUG00000012761) #25	FRY (ENSBMUG00000012691) #26	RXFP2 (ENSBMUG00000012534) #27	ENSBMUG00000012482
Domestic yak	MODERN SPECIES	6	ENSBGRG00000020579	ENSBGRG00000020527	SOHLH2 (ENSBGRG00000020090) #13	ENSBGRG00000020054	DCLK1 (ENSBGRG00000019462) #14	ENSBGRG00000019383	MAB21L1 (ENSBGRG00000019318) #16	NBEA (ENSBGRG00000016974) #15	RFC3 (ENSBGRG00000016678) #17	ENSBGRG00000016636	STARD13 (ENSBGRG00000016454) #19	ENSBGRG00000016436	KL (ENSBGRG00000016337) #20	PDS5B (ENSBGRG00000015847) #21	ENSBGRG00000015818	ENSBGRG00000015604 #22	ENSBGRG00000015571	N4BP2L1 (ENSBGRG00000015405) #23	BRCA2 (ENSBGRG00000014675) #24	ENSBGRG00000014613	ZAR1L (ENSBGRG00000014522) #25	FRY (ENSBGRG00000010015) #26	ENSBGRG00000009806	RXFP2 (ENSBGRG00000008963) #27	B3GLCT (ENSBGRG00000008659) #28	HSPH1 (ENSBGRG00000007830) #29	ENSBGRG00000007607	TEX26 (ENSBGRG00000007537) #30	MEDAG (ENSBGRG00000007441) #31	ALOX5AP (ENSBGRG00000007328) #32	USPL1 (ENSBGRG00000007239) #33
Bos_b	ANCESTRAL SPECIES	33	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35	ENSGT01100000263481.n.a.b.b.a.b.b.a.a.b.a.b
Cow	MODERN SPECIES	3	RFXAP (ENSBTAG00000005351) #8	SERTM1 (ENSBTAG00000051461) #9	CCNA1 (ENSBTAG00000007284) #10	SPART (ENSBTAG00000008040) #11	SOHLH2 (ENSBTAG00000018955) #13	ENSBTAG00000053984 #14	DCLK1 (ENSBTAG00000038495) #14	NBEA (ENSBTAG00000022991) #15	MAB21L1 (ENSBTAG00000034069) #16	RFC3 (ENSBTAG00000010787) #17	STARD13 (ENSBTAG00000021815) #19	KL (ENSBTAG00000013984) #20	ENSBTAG00000052284	ENSBTAG00000052447	PDS5B (ENSBTAG00000011597) #21	N4BP2L2 (ENSBTAG00000023279) #22	N4BP2L1 (ENSBTAG00000000993) #23	BRCA2 (ENSBTAG00000000988) #24	ZAR1L (ENSBTAG00000026384) #25	FRY (ENSBTAG00000006771) #26	RXFP2 (ENSBTAG00000015132) #27	ENSBTAG00000053332	B3GLCT (ENSBTAG00000033412) #28	HSPH1 (ENSBTAG00000005012) #29	ENSBTAG00000016052	TEX26 (ENSBTAG00000033386) #30	MEDAG (ENSBTAG00000008271) #31	ALOX5AP (ENSBTAG00000013201) #32	USPL1 (ENSBTAG00000001178) #33	HMGB1 (ENSBTAG00000018103) ##34	KATNAL1 (ENSBTAG00000009340) #35
Caprinae	ANCESTRAL SPECIES	28	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00390000017100	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34
Goat	MODERN SPECIES	3	SMAD9 (ENSCHIG00000017165) #7	RFXAP (ENSCHIG00000007931) #8	SERTM1 (ENSCHIG00000006642) #9	CCNA1 (ENSCHIG00000013870) #10	SPART (ENSCHIG00000024649) #11	SOHLH2 (ENSCHIG00000013941) #13	DCLK1 (ENSCHIG00000022767) #14	MAB21L1 (ENSCHIG00000011613) #16	NBEA (ENSCHIG00000024367) #15	ENSCHIG00000018724	RFC3 (ENSCHIG00000012709) #17	STARD13 (ENSCHIG00000021532) #19	KL (ENSCHIG00000006250) #20	ENSCHIG00000022651	PDS5B (ENSCHIG00000006844) #21	N4BP2L2 (ENSCHIG00000019989) #22	ENSCHIG00000017364	ENSCHIG00000015346	N4BP2L1 (ENSCHIG00000006314) #23	BRCA2 (ENSCHIG00000021344) #24	ZAR1L (ENSCHIG00000012458) #25	FRY (ENSCHIG00000018326) #26	ENSCHIG00000014918	RXFP2 (ENSCHIG00000007689) #27	B3GLCT (ENSCHIG00000016248) #28	HSPH1 (ENSCHIG00000003518) #29	TEX26 (ENSCHIG00000013376) #30	MEDAG (ENSCHIG00000019733) #31	ALOX5AP (ENSCHIG00000020532) #32	USPL1 (ENSCHIG00000025535) #33	HMGB1 (ENSCHIG00000018473) ##34
Siberian musk deer	MODERN SPECIES	18	RFXAP (ENSMMSG00000018161) #8	SERTM1 (ENSMMSG00000018207) #9	CCNA1 (ENSMMSG00000018218) #10	SPART (ENSMMSG00000018271) #11	SOHLH2 (ENSMMSG00000018312) #13	ENSMMSG00000018394	DCLK1 (ENSMMSG00000018433) #14	NBEA (ENSMMSG00000018865) #15	MAB21L1 (ENSMMSG00000020535) #16	RFC3 (ENSMMSG00000020587) #17	ENSMMSG00000020637	STARD13 (ENSMMSG00000000004) #19	KL (ENSMMSG00000000017) #20	PDS5B (ENSMMSG00000000057) #21	ENSMMSG00000000223	ENSMMSG00000000248 #22	N4BP2L1 (ENSMMSG00000000325) #23	BRCA2 (ENSMMSG00000000412) #24	ZAR1L (ENSMMSG00000000732) #25	FRY (ENSMMSG00000000954) #26	ENSMMSG00000001920	RXFP2 (ENSMMSG00000001942) #27	B3GLCT (ENSMMSG00000002053) #28	HSPH1 (ENSMMSG00000002127) #29	TEX26 (ENSMMSG00000002369) #30	MEDAG (ENSMMSG00000002386) #31	ALOX5AP (ENSMMSG00000002405) #32	USPL1 (ENSMMSG00000002424) #33	ENSMMSG00000002453 ##34	KATNAL1 (ENSMMSG00000002485) #35	UBL3 (ENSMMSG00000002504) #36
Yarkand deer	MODERN SPECIES	23	RFXAP (ENSCHYG00000025529) #8	CCNA1 (ENSCHYG00000025576) #10	SPART (ENSCHYG00000025606) #11	ENSCHYG00000025657	SOHLH2 (ENSCHYG00000025680) #13	DCLK1 (ENSCHYG00000025739) #14	NBEA (ENSCHYG00000025971) #15	ENSCHYG00000026070	MAB21L1 (ENSCHYG00000026080) #16	ENSCHYG00000026087	RFC3 (ENSCHYG00000026097) #17	STARD13 (ENSCHYG00000026131) #19	ENSCHYG00000026212 #20	PDS5B (ENSCHYG00000026234) #21	ENSCHYG00000026345	ENSCHYG00000026356 #22	N4BP2L1 (ENSCHYG00000026388) #23	ENSCHYG00000026418	BRCA2 (ENSCHYG00000026430) #24	ZAR1L (ENSCHYG00000026455) #25	FRY (ENSCHYG00000026531) #26	ENSCHYG00000026798	ENSCHYG00000026805	ENSCHYG00000026819	ENSCHYG00000026824	RXFP2 (ENSCHYG00000026840) #27	B3GLCT (ENSCHYG00000026903) #28	HSPH1 (ENSCHYG00000014243) #29	ENSCHYG00000014786	TEX26 (ENSCHYG00000015069) #30	MEDAG (ENSCHYG00000015182) #31
Laurasiatheria_b	ANCESTRAL SPECIES	21	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00740000117041	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
Carnivora	ANCESTRAL SPECIES	23	ENSGT00940000154391.a.b	ENSGT00940000163092.d #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00740000117041	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
Caniformia	ANCESTRAL SPECIES	24	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00740000117041	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
Canidae	ANCESTRAL SPECIES	31	ENSGT00940000153481.C	ENSGT00940000163092.d #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT01030000235240.b.b	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b.h #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Canis_lupus	ANCESTRAL SPECIES	18	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT01030000235240.b.b	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT01050000248407	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000153305.d.cb.b.a	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b.h #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00950000183142.a.a.r	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
Dog	MODERN SPECIES	17	SOHLH2 (ENSCAFG00845028635) #13	DCLK1 (ENSCAFG00845028832) #14	ENSCAFG00845029079	ENSCAFG00845029106 #15	MAB21L1 (ENSCAFG00845029178) #16	ENSCAFG00845029222 #15	ENSCAFG00845029282	ENSCAFG00845029319	ENSCAFG00845029351	RFC3 (ENSCAFG00845029383) #17	STARD13 (ENSCAFG00845029481) #19	ENSCAFG00845029592	KL (ENSCAFG00845014839) #20	PDS5B (ENSCAFG00845014958) #21	ENSCAFG00845015200	N4BP2L2 (ENSCAFG00845015321) #22	N4BP2L1 (ENSCAFG00845015529) #23	ZAR1L (ENSCAFG00845015693) #25	FRY (ENSCAFG00845016949) #26	RXFP2 (ENSCAFG00845019902) #27	ENSCAFG00845020276	B3GLCT (ENSCAFG00845020443) #28	HSPH1 (ENSCAFG00845021081) #29	ENSCAFG00845021368	TEX26 (ENSCAFG00845021671) #30	MEDAG (ENSCAFG00845021735) #31	ALOX5AP (ENSCAFG00845021804) #32	USPL1 (ENSCAFG00845021869) #33	HMGB1 (ENSCAFG00845021967) ##34	KATNAL1 (ENSCAFG00845022093) #35	ENSCAFG00845022193
Dingo	MODERN SPECIES	304	ENSCAFG00020021530	SOHLH2 (ENSCAFG00020021531) #13	ENSCAFG00020021539 #14	ENSCAFG00020021550 #14	ENSCAFG00020021582	NBEA (ENSCAFG00020021598) #15	MAB21L1 (ENSCAFG00020021712) #16	ENSCAFG00020021715	ENSCAFG00020021720	ENSCAFG00020021726	RFC3 (ENSCAFG00020021731) #17	STARD13 (ENSCAFG00020021742) #19	KL (ENSCAFG00020021757) #20	PDS5B (ENSCAFG00020021916) #21	ENSCAFG00020024854	ENSCAFG00020024856 #22	N4BP2L1 (ENSCAFG00020024858) #23	BRCA2 (ENSCAFG00020024869) #24	ZAR1L (ENSCAFG00020024880) #25	FRY (ENSCAFG00020024899) #26	RXFP2 (ENSCAFG00020025044) #27	ENSCAFG00020025054	ENSCAFG00020025058	B3GLCT (ENSCAFG00020025062) #28	HSPH1 (ENSCAFG00020025091) #29	ENSCAFG00020025093	TEX26 (ENSCAFG00020025097) #30	MEDAG (ENSCAFG00020025105) #31	ALOX5AP (ENSCAFG00020025114) #32	USPL1 (ENSCAFG00020025117) #33	ENSCAFG00020025123 ##34
Red fox	MODERN SPECIES	22	ENSVVUG00000026631	SPART (ENSVVUG00000026627) #11	ENSVVUG00000026623	SOHLH2 (ENSVVUG00000026616) #13	ENSVVUG00000026614	ENSVVUG00000026611 #14	DCLK1 (ENSVVUG00000026606) #14	MAB21L1 (ENSVVUG00000026598) #16	NBEA (ENSVVUG00000026559) #15	ENSVVUG00000026551	RFC3 (ENSVVUG00000026536) #17	ENSVVUG00000026530	STARD13 (ENSVVUG00000026517) #19	ENSVVUG00000026513 #20	PDS5B (ENSVVUG00000026481) #21	N4BP2L2 (ENSVVUG00000026468) #22	N4BP2L1 (ENSVVUG00000026465) #23	BRCA2 (ENSVVUG00000026461) #24	ZAR1L (ENSVVUG00000026458) #25	FRY (ENSVVUG00000020216) #26	ENSVVUG00000019729	RXFP2 (ENSVVUG00000019680) #27	B3GLCT (ENSVVUG00000019654) #28	HSPH1 (ENSVVUG00000010061) #29	ENSVVUG00000009779	TEX26 (ENSVVUG00000009744) #30	MEDAG (ENSVVUG00000009731) #31	ALOX5AP (ENSVVUG00000009718) #32	USPL1 (ENSVVUG00000009708) #33	HMGB1 (ENSVVUG00000009534) ##34	KATNAL1 (ENSVVUG00000009499) #35
Caniformia_b	ANCESTRAL SPECIES	26	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00740000117041	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
Mustelinae	ANCESTRAL SPECIES	109	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00740000117041	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
American mink	MODERN SPECIES	130	ENSNVIG00000022132	RFXAP (ENSNVIG00000022117) #8	SRTM1 (ENSNVIG00000022113) #9	CCNA1 (ENSNVIG00000022098) #10	SPART (ENSNVIG00000022027) #11	ENSNVIG00000021999 #12	SOHLH2 (ENSNVIG00000021960) #13	DCLK1 (ENSNVIG00000021862) #14	MAB21L1 (ENSNVIG00000021851) #16	NBEA (ENSNVIG00000021664) #15	RFC3 (ENSNVIG00000021629) #17	STARD13 (ENSNVIG00000021560) #19	KL (ENSNVIG00000021542) #20	ENSNVIG00000021539	PDS5B (ENSNVIG00000021528) #21	ENSNVIG00000021498 #22	N4BP2L1 (ENSNVIG00000021457) #23	BRCA2 (ENSNVIG00000021091) #24	ZAR1L (ENSNVIG00000021062) #25	ENSNVIG00000021059	ENSNVIG00000021048
Ferret	MODERN SPECIES	319	SUPT20H (ENSMPUG00000001828)	EXOSC8 (ENSMPUG00000001833)	ALG5 (ENSMPUG00000001836)	ENSMPUG00000001838	RFXAP (ENSMPUG00000001841) #8	CCNA1 (ENSMPUG00000001844) #10	SPART (ENSMPUG00000001848) #11	ENSMPUG00000001851	DCLK1 (ENSMPUG00000001856) #14	NBEA (ENSMPUG00000001876) #15	MAB21L1 (ENSMPUG00000018771) #16	RFC3 (ENSMPUG00000001885) #17	STARD13 (ENSMPUG00000001890) #19	KL (ENSMPUG00000001895) #20	PDS5B (ENSMPUG00000001906) #21	N4BP2L2 (ENSMPUG00000001920) #22	N4BP2L1 (ENSMPUG00000001937) #23	BRCA2 (ENSMPUG00000001945) #24	ZAR1L (ENSMPUG00000001948) #25	ENSMPUG00000001969 #26	ENSMPUG00000001973 #26	ENSMPUG00000001985	RXFP2 (ENSMPUG00000001989) #27
Ursidae	ANCESTRAL SPECIES	27	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Giant Panda	MODERN SPECIES	17	ALG5 (ENSAMEG00000015763)	SMAD9 (ENSAMEG00000014442) #7	RFXAP (ENSAMEG00000014436) #8	SERTM1 (ENSAMEG00000019007) #9	CCNA1 (ENSAMEG00000010312) #10	SPART (ENSAMEG00000010291) #11	ENSAMEG00000028652 #12	SOHLH2 (ENSAMEG00000004619) #13	DCLK1 (ENSAMEG00000004633) #14	MAB21L1 (ENSAMEG00000027355) #16	NBEA (ENSAMEG00000004658) #15	RFC3 (ENSAMEG00000009236) #17	STARD13 (ENSAMEG00000009261) #19	KL (ENSAMEG00000009338) #20	PDS5B (ENSAMEG00000009348) #21	ENSAMEG00000009371 #22	N4BP2L1 (ENSAMEG00000009383) #23	BRCA2 (ENSAMEG00000009390) #24	ZAR1L (ENSAMEG00000009439) #25	FRY (ENSAMEG00000008571) #26	RXFP2 (ENSAMEG00000008702) #27	B3GLCT (ENSAMEG00000008757) #28	HSPH1 (ENSAMEG00000008784) #29	ENSAMEG00000008833	TEX26 (ENSAMEG00000008839) #30	MEDAG (ENSAMEG00000008847) #31	ALOX5AP (ENSAMEG00000023710) #32	ENSAMEG00000008873 #33	ENSAMEG00000008885 #35	UBL3 (ENSAMEG00000008894) #36	SLC7A1 (ENSAMEG00000008899) #37
Ursus	ANCESTRAL SPECIES	57	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT01030000235240	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157257.g #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37
Polar bear	MODERN SPECIES	177	EXOSC8 (ENSUMAG00000024024)	ALG5 (ENSUMAG00000024019)	ENSUMAG00000024013	RFXAP (ENSUMAG00000024011) #8	SERTM1 (ENSUMAG00000024009) #9	CCNA1 (ENSUMAG00000024007) #10	SPART (ENSUMAG00000024006) #11	ENSUMAG00000024004	SOHLH2 (ENSUMAG00000024002) #13	DCLK1 (ENSUMAG00000023979) #14	MAB21L1 (ENSUMAG00000023964) #16	NBEA (ENSUMAG00000023770) #15	RFC3 (ENSUMAG00000023694) #17	STARD13 (ENSUMAG00000023689) #19	PDS5B (ENSUMAG00000022566) #21	ENSUMAG00000022353 #22	N4BP2L1 (ENSUMAG00000022350) #23	BRCA2 (ENSUMAG00000022337) #24	ZAR1L (ENSUMAG00000022330) #25	FRY (ENSUMAG00000018759) #26	RXFP2 (ENSUMAG00000017860) #27	B3GLCT (ENSUMAG00000017840) #28	HSPH1 (ENSUMAG00000017368) #29	TEX26 (ENSUMAG00000017213) #30	MEDAG (ENSUMAG00000017210) #31	ENSUMAG00000017201 #32	USPL1 (ENSUMAG00000017198) #33	ENSUMAG00000017165 ##34	KATNAL1 (ENSUMAG00000017153) #35	UBL3 (ENSUMAG00000017145) #36	SLC7A1 (ENSUMAG00000017056) #37
Felidae	ANCESTRAL SPECIES	23	ENSGT00940000153481.C	ENSGT00940000163092.d #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Panthera	ANCESTRAL SPECIES	21	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00390000000153.l.a.eb	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Panthera_a	ANCESTRAL SPECIES	23	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00390000000153.l.a.eb	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
lion	MODERN SPECIES	1	RFXAP (ENSPLOG00000010917) #8	SERTM1 (ENSPLOG00000010957) #9	CCNA1 (ENSPLOG00000010975) #10	SPART (ENSPLOG00000011034) #11	ENSPLOG00000011079 #12	SOHLH2 (ENSPLOG00000011211) #13	DCLK1 (ENSPLOG00000011437) #14	NBEA (ENSPLOG00000012350) #15	MAB21L1 (ENSPLOG00000014741) #16	ENSPLOG00000014761	RFC3 (ENSPLOG00000014843) #17	ENSPLOG00000014897	STARD13 (ENSPLOG00000014955) #19	KL (ENSPLOG00000015127) #20	PDS5B (ENSPLOG00000015236) #21	ENSPLOG00000015391 #22	N4BP2L1 (ENSPLOG00000015653) #23	BRCA2 (ENSPLOG00000015753) #24	ZAR1L (ENSPLOG00000015842) #25	FRY (ENSPLOG00000016172) #26	RXFP2 (ENSPLOG00000018767) #27	B3GLCT (ENSPLOG00000019047) #28	HSPH1 (ENSPLOG00000019185) #29	ENSPLOG00000019458	TEX26 (ENSPLOG00000019557) #30	MEDAG (ENSPLOG00000019748) #31	ALOX5AP (ENSPLOG00000019807) #32	USPL1 (ENSPLOG00000019841) #33	ENSPLOG00000019888 ##34	KATNAL1 (ENSPLOG00000019942) #35	UBL3 (ENSPLOG00000019992) #36
Cat	MODERN SPECIES		SMAD9 (ENSFCAG00000003813)	RFXAP (ENSFCAG00000027454) #8	SERTM1 (ENSFCAG00000028471) #9	CCNA1 (ENSFCAG00000004642) #10	SPART (ENSFCAG00000026657) #11	ENSFCAG00000045901 #12	SOHLH2 (ENSFCAG00000004161) #13	DCLK1 (ENSFCAG00000004159) #14	MAB21L1 (ENSFCAG00000026068) #16	ENSFCAG00000024005	NBEA (ENSFCAG00000031022) #15	RFC3 (ENSFCAG00000025285) #17	STARD13 (ENSFCAG00000013986) #19	KL (ENSFCAG00000013985) #20	PDS5B (ENSFCAG00000018200) #21	ENSFCAG00000022569 #22	N4BP2L1 (ENSFCAG00000042275) #23	BRCA2 (ENSFCAG00000025587) #24	ZAR1L (ENSFCAG00000032767) #25	FRY (ENSFCAG00000010970) #26	RXFP2 (ENSFCAG00000024539) #27	B3GLCT (ENSFCAG00000018185) #28	HSPH1 (ENSFCAG00000007547) #29	ENSFCAG00000031325	TEX26 (ENSFCAG00000024146) #30	MEDAG (ENSFCAG00000007544) #31	ALOX5AP (ENSFCAG00000037195) #32	USPL1 (ENSFCAG00000022053) #33	HMGB1 (ENSFCAG00000000200) ##34	KATNAL1 (ENSFCAG00000032001) #35	UBL3 (ENSFCAG00000027217) #36
Laurasiatheria_c	ANCESTRAL SPECIES	22	ENSGT00940000163092 #7	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Equus	ANCESTRAL SPECIES	26	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00950000183043.b.b	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174.b #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Donkey	MODERN SPECIES	29	SERTM1 (ENSEASG00005038440) #9	CCNA1 (ENSEASG00005019850) #10	SPART (ENSEASG00005019853) #11	ENSEASG00005019856 #12	SOHLH2 (ENSEASG00005019858) #13	ENSEASG00005036121 #14	DCLK1 (ENSEASG00005019864) #14	NBEA (ENSEASG00005020032) #15	MAB21L1 (ENSEASG00005025412) #16	ENSEASG00005037449	ENSEASG00005021117	RFC3 (ENSEASG00005021123) #17	STARD13 (ENSEASG00005021126) #19	KL (ENSEASG00005021129) #20	PDS5B (ENSEASG00005021135) #21	ENSEASG00005021146 #22	N4BP2L1 (ENSEASG00005026852) #23	BRCA2 (ENSEASG00005021183) #24	ZAR1L (ENSEASG00005021222) #25	FRY (ENSEASG00005021555) #26	RXFP2 (ENSEASG00005022326) #27	B3GLCT (ENSEASG00005022359) #28	HSPH1 (ENSEASG00005022374) #29	ENSEASG00005022381	TEX26 (ENSEASG00005022387) #30	MEDAG (ENSEASG00005022391) #31	ALOX5AP (ENSEASG00005022395) #32	USPL1 (ENSEASG00005022400) #33	HMGB1 (ENSEASG00005032345) ##34	KATNAL1 (ENSEASG00005022416) #35	UBL3 (ENSEASG00005022423) #36
Horse	MODERN SPECIES	8	SERTM1 (ENSECAG00000037439) #9	CCNA1 (ENSECAG00000019420) #10	SPART (ENSECAG00000012173) #11	ENSECAG00000010606 #12	SOHLH2 (ENSECAG00000000201) #13	DCLK1 (ENSECAG00000007300) #14	MAB21L1 (ENSECAG00000004493) #16	NBEA (ENSECAG00000008985) #15	ENSECAG00000045414	RFC3 (ENSECAG00000021614) #17	STARD13 (ENSECAG00000011009) #19	KL (ENSECAG00000008185) #20	ENSECAG00000041314	ENSECAG00000052360	PDS5B (ENSECAG00000019312) #21	N4BP2L2 (ENSECAG00000016028) #22	BRCA2 (ENSECAG00000014890) #24	N4BP2L1 (ENSECAG00000012680) #23	ZAR1L (ENSECAG00000030336) #25	FRY (ENSECAG00000013677) #26	ENSECAG00000003130	RXFP2 (ENSECAG00000014103) #27	B3GLCT (ENSECAG00000009608) #28	HSPH1 (ENSECAG00000018428) #29	ENSECAG00000016853	TEX26 (ENSECAG00000015300) #30	MEDAG (ENSECAG00000014702) #31	ALOX5AP (ENSECAG00000012371) #32	USPL1 (ENSECAG00000011889) #33	HMGB1 (ENSECAG00000008439) #34	KATNAL1 (ENSECAG00000004830) #35
Chiroptera	ANCESTRAL SPECIES	66																ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37
Microchiroptera	ANCESTRAL SPECIES	46	ENSGT00390000015473	ENSGT00390000007182	ENSGT01100000263886	ENSGT01030000234513.B.b.j	ENSGT01030000235001	ENSGT01030000234513.B.b.i	ENSGT01050000244864.B.b	ENSGT00940000157028	ENSGT00940000162379	ENSGT00940000157358	ENSGT00730000111087	ENSGT00940000160555	ENSGT00530000063927.a.b.f	ENSGT00940000157559	ENSGT00940000159259.b	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37
Greater horseshoe bat	MODERN SPECIES	22	ENSRFEG00010002638	GJB2 (ENSRFEG00010002624)	ENSRFEG00010002618	ENSRFEG00010002602	ENSRFEG00010002585	ZMYM2 (ENSRFEG00010002388)	ZMYM5 (ENSRFEG00010002309)	PSPC1 (ENSRFEG00010002280)	MPHOSPH8 (ENSRFEG00010002252)	ENSRFEG00010002232	ENSRFEG00010002202	CENPJ (ENSRFEG00010002165)	ENSRFEG00010002134	RNF17 (ENSRFEG00010001963)	ATP12A (ENSRFEG00010001805)	N4BP2L2 (ENSRFEG00010001750) #22	N4BP2L1 (ENSRFEG00010001694) #23	BRCA2 (ENSRFEG00010001599) #24	ZAR1L (ENSRFEG00010001551) #25	ENSRFEG00010001533	FRY (ENSRFEG00010001135) #26	RXFP2 (ENSRFEG00010000939) #27	ENSRFEG00010000900	B3GLCT (ENSRFEG00010000860) #28	HSPH1 (ENSRFEG00010000709) #29	TEX26 (ENSRFEG00010000643) #30	MEDAG (ENSRFEG00010000622) #31	ALOX5AP (ENSRFEG00010000601) #32	USPL1 (ENSRFEG00010000567) #33	HMGB1 (ENSRFEG00010000531) ##34	KATNAL1 (ENSRFEG00010000476) #35
Microbat	MODERN SPECIES	956	FRY (ENSMLUG00000011686) #26	ZAR1L (ENSMLUG00000010357) #25	ENSMLUG00000030582	ENSMLUG00000004903	ENSMLUG00000001601	ENSMLUG00000029529	ZMYM2 (ENSMLUG00000012333)	ENSMLUG00000028534	PSPC1 (ENSMLUG00000017663)	MPHOSPH8 (ENSMLUG00000017661)	PARP4 (ENSMLUG00000003797)	ENSMLUG00000022252	CENPJ (ENSMLUG00000003913)	RNF17 (ENSMLUG00000003903)	ATP12A (ENSMLUG00000012378)	N4BP2L2 (ENSMLUG00000001225) #22	ENSMLUG00000030443	BRCA2 (ENSMLUG00000013741) #24	GJB2 (ENSMLUG00000015730)	GJB6 (ENSMLUG00000026808)	ENSMLUG00000030132	ENSMLUG00000024191	ENSMLUG00000028646	CRYL1 (ENSMLUG00000009102)	IFT88 (ENSMLUG00000013369)	EEF1AKMT1 (ENSMLUG00000000302)	ENSMLUG00000012089	ENSMLUG00000029730	LATS2 (ENSMLUG00000017711)	ENSMLUG00000013297	SAP18 (ENSMLUG00000002852)
Atlantogenata	ANCESTRAL SPECIES	27	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165796	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00740000117041	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.e.b.a.a.a ##34	ENSGT00940000156630 #35
Afrotheria	ANCESTRAL SPECIES	166					ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165796	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29
Tenrec	MODERN SPECIES	3592																ENSETEG00000014356 #22
Afrotheria_a	ANCESTRAL SPECIES	170						ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165796	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000165080	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29
Elephant	MODERN SPECIES	26					SERTM1 (ENSLAFG00000014428) #9	CCNA1 (ENSLAFG00000001067) #10	SPART (ENSLAFG00000008624) #11	ENSLAFG00000031057	DCLK1 (ENSLAFG00000007594) #14	ENSLAFG00000028418	NBEA (ENSLAFG00000011397) #15	RFC3 (ENSLAFG00000004831) #17	STARD13 (ENSLAFG00000007646) #19	KL (ENSLAFG00000015809) #20	PDS5B (ENSLAFG00000005946) #21	N4BP2L2 (ENSLAFG00000030456) #22	ENSLAFG00000000600	BRCA2 (ENSLAFG00000002670) #24	FRY (ENSLAFG00000002669) #26	RXFP2 (ENSLAFG00000012550) #27	B3GLCT (ENSLAFG00000005051) #28	HSPH1 (ENSLAFG00000015956) #29	DOCK9 (ENSLAFG00000005851)	SLC15A1 (ENSLAFG00000005904)	STK24 (ENSLAFG00000005249)	FARP1 (ENSLAFG00000005242)	IPO5 (ENSLAFG00000016190)	MBNL2 (ENSLAFG00000014497)	OXGR1 (ENSLAFG00000004945)	ENSLAFG00000026992	ENSLAFG00000031663
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00940000153481.C	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.f ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Opossum	DUPLICATION
Opossum	MODERN SPECIES	3	CCNA1 (ENSMODG00000009993) #10	SPART (ENSMODG00000009980) #11	ENSMODG00000009974 #12	DCLK1 (ENSMODG00000009947) #14	MAB21L1 (ENSMODG00000024122) #16	NBEA (ENSMODG00000009914) #15	ENSMODG00000039285	ENSMODG00000024124	RFC3 (ENSMODG00000009764) #17	ENSMODG00000017351	ENSMODG00000045424	STARD13 (ENSMODG00000009691) #19	KL (ENSMODG00000009636) #20	PDS5B (ENSMODG00000009630) #21	ENSMODG00000009531 #22	ENSMODG00000042297 #22	N4BP2L1 (ENSMODG00000009524) #23	ENSMODG00000009516 #24	ZAR1L (ENSMODG00000009462) #25	FRY (ENSMODG00000009454) #26	RXFP2 (ENSMODG00000009382) #27	ENSMODG00000045047	B3GLCT (ENSMODG00000009353) #28	HSPH1 (ENSMODG00000009347) #29	ENSMODG00000009305	ENSMODG00000041498	MEDAG (ENSMODG00000009294) #31	ALOX5AP (ENSMODG00000009265) #32	ENSMODG00000009262 #33	ENSMODG00000009238 ##34	ENSMODG00000048360
Opossum	MODERN SPECIES	3	ENSMODG00000041669	CCNA1 (ENSMODG00000009993) #10	SPART (ENSMODG00000009980) #11	ENSMODG00000009974 #12	DCLK1 (ENSMODG00000009947) #14	MAB21L1 (ENSMODG00000024122) #16	NBEA (ENSMODG00000009914) #15	ENSMODG00000039285	ENSMODG00000024124	RFC3 (ENSMODG00000009764) #17	ENSMODG00000017351	ENSMODG00000045424	STARD13 (ENSMODG00000009691) #19	KL (ENSMODG00000009636) #20	PDS5B (ENSMODG00000009630) #21	ENSMODG00000009531 #22	ENSMODG00000042297 #22	N4BP2L1 (ENSMODG00000009524) #23	ENSMODG00000009516 #24	ZAR1L (ENSMODG00000009462) #25	FRY (ENSMODG00000009454) #26	RXFP2 (ENSMODG00000009382) #27	ENSMODG00000045047	B3GLCT (ENSMODG00000009353) #28	HSPH1 (ENSMODG00000009347) #29	ENSMODG00000009305	ENSMODG00000041498	MEDAG (ENSMODG00000009294) #31	ALOX5AP (ENSMODG00000009265) #32	ENSMODG00000009262 #33	ENSMODG00000009238 ##34
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00530000063686.a.a	ENSGT00530000063686.a.b	ENSGT00940000157541	ENSGT00390000015050	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.f ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Diprotodontia	ANCESTRAL SPECIES	11	ENSGT00530000063686.a.a	ENSGT00530000063686.a.b	ENSGT00940000157541	ENSGT00390000015050	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.f ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT00530000063686.a.a	ENSGT00530000063686.a.b	ENSGT00940000157541	ENSGT00390000015050	ENSGT00390000012235 #11	ENSGT00390000011174 #12	ENSGT00390000016050 #13	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00670000099436	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.f ##34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
koala	DUPLICATION
koala	MODERN SPECIES	66						ENSPCIG00000033307 ##15	ENSPCIG00000030962	RFC3 (ENSPCIG00000020386) #17	ENSPCIG00000033123	STARD13 (ENSPCIG00000016220) #19	KL (ENSPCIG00000016224) #20	ENSPCIG00000016227	PDS5B (ENSPCIG00000025494) #21	ENSPCIG00000026577	ENSPCIG00000025430 #22	ENSPCIG00000033534 #22	N4BP2L1 (ENSPCIG00000025426) #23	ENSPCIG00000032098 #25	FRY (ENSPCIG00000020169) #26	RXFP2 (ENSPCIG00000008787) #27	B3GLCT (ENSPCIG00000026810) #28	HSPH1 (ENSPCIG00000026812) #29	ENSPCIG00000026818	ENSPCIG00000012206 #30	MEDAG (ENSPCIG00000012205) #31	ALOX5AP (ENSPCIG00000019847) #32	USPL1 (ENSPCIG00000019844) #33	ENSPCIG00000021432 ##34	KATNAL1 (ENSPCIG00000021438) #35	UBL3 (ENSPCIG00000003332) #36	SLC7A1 (ENSPCIG00000003318) #37
koala	MODERN SPECIES	66							ENSPCIG00000033307 ##15	ENSPCIG00000030962	RFC3 (ENSPCIG00000020386) #17	ENSPCIG00000033123	STARD13 (ENSPCIG00000016220) #19	KL (ENSPCIG00000016224) #20	ENSPCIG00000016227	PDS5B (ENSPCIG00000025494) #21	ENSPCIG00000026577	ENSPCIG00000025430 #22	ENSPCIG00000033534 #22	N4BP2L1 (ENSPCIG00000025426) #23	ENSPCIG00000032098 #25	FRY (ENSPCIG00000020169) #26	RXFP2 (ENSPCIG00000008787) #27	B3GLCT (ENSPCIG00000026810) #28	HSPH1 (ENSPCIG00000026812) #29	ENSPCIG00000026818	ENSPCIG00000012206 #30	MEDAG (ENSPCIG00000012205) #31	ALOX5AP (ENSPCIG00000019847) #32	USPL1 (ENSPCIG00000019844) #33	ENSPCIG00000021432 ##34	KATNAL1 (ENSPCIG00000021438) #35	UBL3 (ENSPCIG00000003332) #36
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1049	RND3 (ENSVURG00010019553)	MMADHC (ENSVURG00010019562)	SPART (ENSVURG00010019598) #11	ENSVURG00010019614 #13	ENSVURG00010019621	DCLK1 (ENSVURG00010019643) #14	ENSVURG00010019677	NBEA (ENSVURG00010019712) #15	MAB21L1 (ENSVURG00010019759) #16	ENSVURG00010019764	RFC3 (ENSVURG00010019770) #17	ENSVURG00010019790	STARD13 (ENSVURG00010019796) #19	KL (ENSVURG00010019815) #20	PDS5B (ENSVURG00010019844) #21	ENSVURG00010019875 #22	ENSVURG00010019878 #22	N4BP2L1 (ENSVURG00010019887) #23	ENSVURG00010019923 #24	ZAR1L (ENSVURG00010020132) #25	FRY (ENSVURG00010020156) #26	RXFP2 (ENSVURG00010020177) #27	B3GLCT (ENSVURG00010020199) #28	HSPH1 (ENSVURG00010020215) #29	ENSVURG00010020232	ENSVURG00010020246 #30	MEDAG (ENSVURG00010020258) #31	ALOX5AP (ENSVURG00010020266) #32	ENSVURG00010020274 #33	ENSVURG00010020283 ##34	KATNAL1 (ENSVURG00010020293) #35
Common wonbat	MODERN SPECIES	1049	MMADHC (ENSVURG00010019562)	SPART (ENSVURG00010019598) #11	ENSVURG00010019614 #13	ENSVURG00010019621	DCLK1 (ENSVURG00010019643) #14	ENSVURG00010019677	NBEA (ENSVURG00010019712) #15	MAB21L1 (ENSVURG00010019759) #16	ENSVURG00010019764	RFC3 (ENSVURG00010019770) #17	ENSVURG00010019790	STARD13 (ENSVURG00010019796) #19	KL (ENSVURG00010019815) #20	PDS5B (ENSVURG00010019844) #21	ENSVURG00010019875 #22	ENSVURG00010019878 #22	N4BP2L1 (ENSVURG00010019887) #23	ENSVURG00010019923 #24	ZAR1L (ENSVURG00010020132) #25	FRY (ENSVURG00010020156) #26	RXFP2 (ENSVURG00010020177) #27	B3GLCT (ENSVURG00010020199) #28	HSPH1 (ENSVURG00010020215) #29	ENSVURG00010020232	ENSVURG00010020246 #30	MEDAG (ENSVURG00010020258) #31	ALOX5AP (ENSVURG00010020266) #32	ENSVURG00010020274 #33	ENSVURG00010020283 ##34	KATNAL1 (ENSVURG00010020293) #35	ENSVURG00010020303
Wallaby	MODERN SPECIES	4713																ENSMEUG00000011230 #22
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000026547	ENSSHAG00000022458	ENSSHAG00000017174	ENSSHAG00000014382	ENSSHAG00000013973 #11	CCDC169 (ENSSHAG00000013972) #12	SOHLH2 (ENSSHAG00000013234) #13	DCLK1 (ENSSHAG00000010588) #14	NBEA (ENSSHAG00000001274) #15	MAB21L1 (ENSSHAG00000028852) #16	RFC3 (ENSSHAG00000012696) #17	STARD13 (ENSSHAG00000006090) #19	KL (ENSSHAG00000004604) #20	ENSSHAG00000030187	PDS5B (ENSSHAG00000012281) #21	ENSSHAG00000011360 #22	ENSSHAG00000027940 #23	ENSSHAG00000010421 #24	ZAR1L (ENSSHAG00000008288) #25	FRY (ENSSHAG00000006143) #26	RXFP2 (ENSSHAG00000002860) #27	B3GLCT (ENSSHAG00000016785) #28	ENSSHAG00000028294	HSPH1 (ENSSHAG00000016697) #29	ENSSHAG00000016069 #30	MEDAG (ENSSHAG00000027393) #31	ALOX5AP (ENSSHAG00000015184) #32	ENSSHAG00000014789 #33	ENSSHAG00000014034 ##34	KATNAL1 (ENSSHAG00000025350) #35	UBL3 (ENSSHAG00000026625) #36
Platypus	MODERN SPECIES	12	ALG5 (ENSOANG00000015498)	ENSOANG00000015497	ENSOANG00000036145 #8	SERTM1 (ENSOANG00000015496) #9	CCNA1 (ENSOANG00000015494) #10	SPART (ENSOANG00000015493) #11	ENSOANG00000022524 #13	DCLK1 (ENSOANG00000015492) #14	MAB21L1 (ENSOANG00000040142) #16	ENSOANG00000049110 #15	ENSOANG00000015488 #15	RFC3 (ENSOANG00000039846) #17	STARD13 (ENSOANG00000015487) #19	KL (ENSOANG00000015486) #20	PDS5B (ENSOANG00000015485) #21	ENSOANG00000015484 #22	ENSOANG00000036140 #23	ENSOANG00000015481 #24	FRY (ENSOANG00000022546) #26	RXFP2 (ENSOANG00000015476) #27	B3GLCT (ENSOANG00000015475) #28	HSPH1 (ENSOANG00000015474) #29	ENSOANG00000015473	TEX26 (ENSOANG00000046294) #30	MEDAG (ENSOANG00000039210) #31	ALOX5AP (ENSOANG00000040345) #32	ENSOANG00000014720 #33	ENSOANG00000048910	ENSOANG00000014719 #34	KATNAL1 (ENSOANG00000014718) #35	UBL3 (ENSOANG00000039422) #36
Sauria	ANCESTRAL SPECIES	2	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Lepidosauria	ANCESTRAL SPECIES	17			ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00960000190702	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37	ENSGT00950000183026.B
tuatara	MODERN SPECIES	1307											RFC3 (ENSSPUG00000014598) #17	GCC2 (ENSSPUG00000014554)	STARD13 (ENSSPUG00000014531) #19	KL (ENSSPUG00000014514) #20	PDS5B (ENSSPUG00000014477) #21	ENSSPUG00000014461 #22	ENSSPUG00000014448	ENSSPUG00000014418 #24	ZAR1L (ENSSPUG00000014404) #25	FRY (ENSSPUG00000014149) #26
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000166068	ENSGT00940000158378	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000166068	ENSGT00940000158378	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120.d #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37
Argentine black and white tegu	MODERN SPECIES		ENSSMRG00000006339	B4GALT4 (ENSSMRG00000006343)	SMAD9 (ENSSMRG00000006369) #7	RFXAP (ENSSMRG00000006372) #8	SERTM1 (ENSSMRG00000006373) #9	CCNA1 (ENSSMRG00000006375) #10	SPART (ENSSMRG00000006381) #11	ENSSMRG00000006385	DCLK1 (ENSSMRG00000006415) #14	NBEA (ENSSMRG00000006588) #15	MAB21L1 (ENSSMRG00000013080) #16	RFC3 (ENSSMRG00000013082) #17	STARD13 (ENSSMRG00000013084) #19	KL (ENSSMRG00000013085) #20	PDS5B (ENSSMRG00000013086) #21	ENSSMRG00000013088 #22	ENSSMRG00000013089	BRCA2 (ENSSMRG00000013090) #24	ZAR1L (ENSSMRG00000013092) #25	FRY (ENSSMRG00000013093) #26	B3GLCT (ENSSMRG00000013095) #28	HSPH1 (ENSSMRG00000013097) #29	ENSSMRG00000013098	ENSSMRG00000013101	MEDAG (ENSSMRG00000013102) #31	ALOX5AP (ENSSMRG00000013103) #32	USPL1 (ENSSMRG00000013104) #33	ENSSMRG00000013105 #34	KATNAL1 (ENSSMRG00000013106) #35	UBL3 (ENSSMRG00000013108) #36	SLC7A1 (ENSSMRG00000013111) #37
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	12	ENSPMRG00000006762	ENSPMRG00000006755	ENSPMRG00000006750	ENSPMRG00000006746 #14	ENSPMRG00000006741 #14	MAB21L1 (ENSPMRG00000006735) #16	NBEA (ENSPMRG00000004230) #15	RFC3 (ENSPMRG00000003809) #17	STARD13 (ENSPMRG00000003795) #19	KL (ENSPMRG00000003789) #20	PDS5B (ENSPMRG00000003777) #21	ENSPMRG00000003768	ENSPMRG00000003764	ENSPMRG00000003760	N4BP2L2 (ENSPMRG00000003755) #22	ENSPMRG00000003751 #22	ENSPMRG00000003745	BRCA2 (ENSPMRG00000003676) #24	ZAR1L (ENSPMRG00000003656) #25	FRY (ENSPMRG00000003097) #26	ENSPMRG00000002782	ENSPMRG00000002773	B3GLCT (ENSPMRG00000002733) #28	HSPH1 (ENSPMRG00000002693) #29	ENSPMRG00000002654	TEX26 (ENSPMRG00000002633) #30	MEDAG (ENSPMRG00000002626) #31	ALOX5AP (ENSPMRG00000002620) #32	USPL1 (ENSPMRG00000002600) #33	ENSPMRG00000004304	ENSPMRG00000004293 #34
Common wall lizard	MODERN SPECIES	12	SPART (ENSPMRG00000006769) #11	ENSPMRG00000006762	ENSPMRG00000006755	ENSPMRG00000006750	ENSPMRG00000006746 #14	ENSPMRG00000006741 #14	MAB21L1 (ENSPMRG00000006735) #16	NBEA (ENSPMRG00000004230) #15	RFC3 (ENSPMRG00000003809) #17	STARD13 (ENSPMRG00000003795) #19	KL (ENSPMRG00000003789) #20	PDS5B (ENSPMRG00000003777) #21	ENSPMRG00000003768	ENSPMRG00000003764	ENSPMRG00000003760	N4BP2L2 (ENSPMRG00000003755) #22	ENSPMRG00000003751 #22	ENSPMRG00000003745	BRCA2 (ENSPMRG00000003676) #24	ZAR1L (ENSPMRG00000003656) #25	FRY (ENSPMRG00000003097) #26	ENSPMRG00000002782	ENSPMRG00000002773	B3GLCT (ENSPMRG00000002733) #28	HSPH1 (ENSPMRG00000002693) #29	ENSPMRG00000002654	TEX26 (ENSPMRG00000002633) #30	MEDAG (ENSPMRG00000002626) #31	ALOX5AP (ENSPMRG00000002620) #32	USPL1 (ENSPMRG00000002600) #33	ENSPMRG00000004304
Toxicofera	ANCESTRAL SPECIES	9	ENSGT00940000166068	ENSGT00940000158378	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37
Elapidae	ANCESTRAL SPECIES	10	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000154956 #14	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b.h #26	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37
Elapidae_a	ANCESTRAL SPECIES	12	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000154956 #14	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b.h #26	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37
Acanthophiinae	ANCESTRAL SPECIES	14	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000154956 #14	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b.h #26	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37	ENSGT00950000183026.B
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	41	ENSPTXG00000009065	B4GALT4 (ENSPTXG00000007136)	SMAD9 (ENSPTXG00000007135) #7	RFXAP (ENSPTXG00000007134) #8	SERTM1 (ENSPTXG00000007133) #9	CCNA1 (ENSPTXG00000007132) #10	SPART (ENSPTXG00000007131) #11	ENSPTXG00000007130 #14	ENSPTXG00000007091 #14	MAB21L1 (ENSPTXG00000007088) #16	NBEA (ENSPTXG00000007084) #15	RFC3 (ENSPTXG00000007083) #17	STARD13 (ENSPTXG00000006980) #19	KL (ENSPTXG00000006977) #20	PDS5B (ENSPTXG00000006975) #21	ENSPTXG00000006973 #22	ENSPTXG00000006971 #22	ENSPTXG00000006968	ENSPTXG00000006966	ZAR1L (ENSPTXG00000006963) #25	FRY (ENSPTXG00000005637) #26	B3GLCT (ENSPTXG00000005615) #28	HSPH1 (ENSPTXG00000005358) #29	ENSPTXG00000005354	MEDAG (ENSPTXG00000005353) #31	ALOX5AP (ENSPTXG00000005352) #32	USPL1 (ENSPTXG00000005351) #33	ENSPTXG00000005350 #34	KATNAL1 (ENSPTXG00000005349) #35	UBL3 (ENSPTXG00000005348) #36	SLC7A1 (ENSPTXG00000005347) #37
Eastern brown snake	MODERN SPECIES	41	B4GALT4 (ENSPTXG00000007136)	SMAD9 (ENSPTXG00000007135) #7	RFXAP (ENSPTXG00000007134) #8	SERTM1 (ENSPTXG00000007133) #9	CCNA1 (ENSPTXG00000007132) #10	SPART (ENSPTXG00000007131) #11	ENSPTXG00000007130 #14	ENSPTXG00000007091 #14	MAB21L1 (ENSPTXG00000007088) #16	NBEA (ENSPTXG00000007084) #15	RFC3 (ENSPTXG00000007083) #17	STARD13 (ENSPTXG00000006980) #19	KL (ENSPTXG00000006977) #20	PDS5B (ENSPTXG00000006975) #21	ENSPTXG00000006973 #22	ENSPTXG00000006971 #22	ENSPTXG00000006968	ENSPTXG00000006966	ZAR1L (ENSPTXG00000006963) #25	FRY (ENSPTXG00000005637) #26	B3GLCT (ENSPTXG00000005615) #28	HSPH1 (ENSPTXG00000005358) #29	ENSPTXG00000005354	MEDAG (ENSPTXG00000005353) #31	ALOX5AP (ENSPTXG00000005352) #32	USPL1 (ENSPTXG00000005351) #33	ENSPTXG00000005350 #34	KATNAL1 (ENSPTXG00000005349) #35	UBL3 (ENSPTXG00000005348) #36	SLC7A1 (ENSPTXG00000005347) #37	MTUS2 (ENSPTXG00000005346)
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	68											ENSNSUG00000012802 ##15	RFC3 (ENSNSUG00000012803) #17	STARD13 (ENSNSUG00000012820) #19	KL (ENSNSUG00000012824) #20	PDS5B (ENSNSUG00000012833) #21	ENSNSUG00000012834 #22	ENSNSUG00000012835 #22	ENSNSUG00000012836	BRCA2 (ENSNSUG00000012837) #24	ZAR1L (ENSNSUG00000012838) #25	ENSNSUG00000012839 #26	ENSNSUG00000012840 #26	ENSNSUG00000012841 #26	B3GLCT (ENSNSUG00000012842) #28	ENSNSUG00000012843 #29	ENSNSUG00000012844	MEDAG (ENSNSUG00000012845) #31	ALOX5AP (ENSNSUG00000012858) #32	USPL1 (ENSNSUG00000012859) #33	ENSNSUG00000012860 #34	KATNAL1 (ENSNSUG00000012862) #35
Mainland tiger snake	MODERN SPECIES	68										ENSNSUG00000012802 ##15	RFC3 (ENSNSUG00000012803) #17	STARD13 (ENSNSUG00000012820) #19	KL (ENSNSUG00000012824) #20	PDS5B (ENSNSUG00000012833) #21	ENSNSUG00000012834 #22	ENSNSUG00000012835 #22	ENSNSUG00000012836	BRCA2 (ENSNSUG00000012837) #24	ZAR1L (ENSNSUG00000012838) #25	ENSNSUG00000012839 #26	ENSNSUG00000012840 #26	ENSNSUG00000012841 #26	B3GLCT (ENSNSUG00000012842) #28	ENSNSUG00000012843 #29	ENSNSUG00000012844	MEDAG (ENSNSUG00000012845) #31	ALOX5AP (ENSNSUG00000012858) #32	USPL1 (ENSNSUG00000012859) #33	ENSNSUG00000012860 #34	KATNAL1 (ENSNSUG00000012862) #35	UBL3 (ENSNSUG00000012927) #36
Blue-lipped sea krait	MODERN SPECIES	9424																ENSLLTG00000014678 #22	ENSLLTG00000014675
Indian cobra	MODERN SPECIES	4	B4GALT4 (ENSNNAG00000005434)	SMAD9 (ENSNNAG00000005485) #7	RFXAP (ENSNNAG00000005595) #8	SERTM1 (ENSNNAG00000005673) #9	CCNA1 (ENSNNAG00000005686) #10	SPART (ENSNNAG00000005725) #11	ENSNNAG00000005742 #14	ENSNNAG00000005797 #14	NBEA (ENSNNAG00000007224) #15	MAB21L1 (ENSNNAG00000018134) #16	RFC3 (ENSNNAG00000018137) #17	ENSNNAG00000018146 #19	ENSNNAG00000018150 #19	KL (ENSNNAG00000018166) #20	PDS5B (ENSNNAG00000018185) #21	ENSNNAG00000018192 #22	ENSNNAG00000018198	ENSNNAG00000018200	ENSNNAG00000018210 #25	FRY (ENSNNAG00000018221) #26	B3GLCT (ENSNNAG00000018259) #28	HSPH1 (ENSNNAG00000018268) #29	ENSNNAG00000018274	MEDAG (ENSNNAG00000018277) #31	ALOX5AP (ENSNNAG00000018279) #32	USPL1 (ENSNNAG00000018281) #33	ENSNNAG00000018286 #34	KATNAL1 (ENSNNAG00000018289) #35	UBL3 (ENSNNAG00000018292) #36	SLC7A1 (ENSNNAG00000018294) #37	ENSNNAG00000018308
Lizard	DUPLICATION
Lizard	MODERN SPECIES	2	ENSACAG00000041188	ENSACAG00000004463	SERTM1 (ENSACAG00000004458) #9	CCNA1 (ENSACAG00000004378) #10	SPART (ENSACAG00000004319) #11	ENSACAG00000004313	ENSACAG00000025881 #14	ENSACAG00000004272 #14	NBEA (ENSACAG00000003942) #15	ENSACAG00000041308	MAB21L1 (ENSACAG00000004191) #16	ENSACAG00000003886 #17	ENSACAG00000039574	PDS5B (ENSACAG00000004327) #21	N4BP2L2 (ENSACAG00000004509) #22	ENSACAG00000044695 #22	ENSACAG00000004526	BRCA2 (ENSACAG00000004541) #24	ZAR1L (ENSACAG00000004594) #25	FRY (ENSACAG00000004728) #26	B3GLCT (ENSACAG00000004903) #28	HSPH1 (ENSACAG00000004925) #29	ENSACAG00000005049	ENSACAG00000005067	MEDAG (ENSACAG00000005068) #31	ALOX5AP (ENSACAG00000045423) #32	USPL1 (ENSACAG00000005080) #33	ENSACAG00000005092 #34	KATNAL1 (ENSACAG00000005119) #35	UBL3 (ENSACAG00000005809) #36	SLC7A1 (ENSACAG00000004104) #37
Lizard	MODERN SPECIES	2	ENSACAG00000034776	ENSACAG00000041188	ENSACAG00000004463	SERTM1 (ENSACAG00000004458) #9	CCNA1 (ENSACAG00000004378) #10	SPART (ENSACAG00000004319) #11	ENSACAG00000004313	ENSACAG00000025881 #14	ENSACAG00000004272 #14	NBEA (ENSACAG00000003942) #15	ENSACAG00000041308	MAB21L1 (ENSACAG00000004191) #16	ENSACAG00000003886 #17	ENSACAG00000039574	PDS5B (ENSACAG00000004327) #21	N4BP2L2 (ENSACAG00000004509) #22	ENSACAG00000044695 #22	ENSACAG00000004526	BRCA2 (ENSACAG00000004541) #24	ZAR1L (ENSACAG00000004594) #25	FRY (ENSACAG00000004728) #26	B3GLCT (ENSACAG00000004903) #28	HSPH1 (ENSACAG00000004925) #29	ENSACAG00000005049	ENSACAG00000005067	MEDAG (ENSACAG00000005068) #31	ALOX5AP (ENSACAG00000045423) #32	USPL1 (ENSACAG00000005080) #33	ENSACAG00000005092 #34	KATNAL1 (ENSACAG00000005119) #35	UBL3 (ENSACAG00000005809) #36
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000153481.C	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000153481.C	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00960000190702	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Aves	ANCESTRAL SPECIES		ENSGT00940000153481.C	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT01080000257332.A.a.a	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37	ENSGT00950000183026.B
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00940000153481.C	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT01080000257332.A.a.a.c	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000154136.k.b.b.a	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37	ENSGT00950000183026.B
Anatidae	ANCESTRAL SPECIES	16	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000154136.k.b.b.a.c.b	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37	ENSGT00950000183026.B
Pink-footed goose	MODERN SPECIES	66											RFC3 (ENSABRG00000001977) #17	STARD13 (ENSABRG00000002017) #19	KL (ENSABRG00000002168) #20	ENSABRG00000002323	PDS5B (ENSABRG00000003298) #21	N4BP2L2 (ENSABRG00000013520) #22	ENSABRG00000013526 #23	ENSABRG00000013535	ZAR1L (ENSABRG00000013581) #25	FRY (ENSABRG00000014418) #26	RXFP2 (ENSABRG00000020009) #27	B3GLCT (ENSABRG00000020013) #28	HSPH1 (ENSABRG00000020015) #29	ALOX5AP (ENSABRG00000020028) #32	USPL1 (ENSABRG00000020031) #33	ENSABRG00000020036 #34	KATNAL1 (ENSABRG00000020047) #35	UBL3 (ENSABRG00000020066) #36	SLC7A1 (ENSABRG00000020071) #37	MTUS2 (ENSABRG00000020080)	SLC46A3 (ENSABRG00000020099)
Duck	MODERN SPECIES		ALG5 (ENSAPLG00000009011)	ENSAPLG00000009135	SERTM1 (ENSAPLG00000016590) #9	CCNA1 (ENSAPLG00000009813) #10	SPART (ENSAPLG00000018313) #11	ENSAPLG00000029353	DCLK1 (ENSAPLG00000009916) #14	ENSAPLG00000010039 #15	ENSAPLG00000018948 #15	MAB21L1 (ENSAPLG00000023847) #16	ENSAPLG00000024147 #15	RFC3 (ENSAPLG00000010374) #17	STARD13 (ENSAPLG00000009841) #19	ENSAPLG00000018956 #20	PDS5B (ENSAPLG00000008377) #21	ENSAPLG00000030183 #22	ENSAPLG00000024140	N4BP2L1 (ENSAPLG00000026439) #23	BRCA2 (ENSAPLG00000007774) #24	ZAR1L (ENSAPLG00000007718) #25	FRY (ENSAPLG00000006519) #26	RXFP2 (ENSAPLG00000006226) #27	B3GLCT (ENSAPLG00000006024) #28	HSPH1 (ENSAPLG00000005104) #29	ALOX5AP (ENSAPLG00000004149) #32	USPL1 (ENSAPLG00000003991) #33	ENSAPLG00000030014 #34	KATNAL1 (ENSAPLG00000003805) #35	UBL3 (ENSAPLG00000020134) #36	SLC7A1 (ENSAPLG00000008545) #37	MTUS2 (ENSAPLG00000008305)
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000153481.C	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT01080000257332.A.a.a.c.a	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000154136.k.b.b.a.a	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000155499 #28	ENSGT00940000159635.q #29	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000153481.C	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT01080000257332.A.a.a.c.a.b.b	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000154136.k.b.b.a.a	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000155499 #28	ENSGT00940000159635.q #29	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734
Chicken	MODERN SPECIES		SMAD9 (ENSGALG00010006331)	RFXAP (ENSGALG00010006342) #8	SERTM1 (ENSGALG00010006361) #9	CCNA1 (ENSGALG00010006366) #10	SPART (ENSGALG00010006381) #11	ENSGALG00010006408	DCLK1 (ENSGALG00010006472) #14	NBEA (ENSGALG00010006516) #15	MAB21L1 (ENSGALG00010007188) #16	RFC3 (ENSGALG00010006542) #17	STARD13 (ENSGALG00010006592) #19	ENSGALG00010006598	KL (ENSGALG00010006608) #20	ENSGALG00010006623	PDS5B (ENSGALG00010006657) #21	ENSGALG00010006716 #22	ENSGALG00010006728	BRCA2 (ENSGALG00010006740) #24	ZAR1L (ENSGALG00010006752) #25	FRY (ENSGALG00010006835) #26	B3GLCT (ENSGALG00010006903) #28	HSPH1 (ENSGALG00010006913) #29	ALOX5AP (ENSGALG00010006942) #32	USPL1 (ENSGALG00010006988) #33	HMGB1 (ENSGALG00010007011) #34	KATNAL1 (ENSGALG00010007028) #35	UBL3 (ENSGALG00010007070) #36	SLC7A1 (ENSGALG00010007106) #37	ENSGALG00010007162	SLC46A3 (ENSGALG00010005042)	POMP (ENSGALG00010005060)
Turkey	MODERN SPECIES		ENSMGAG00000015090 #37	ENSMGAG00000007304	UBL3 (ENSMGAG00000020600) #36	ENSMGAG00000015088 #35	ENSMGAG00000015087 #34	ENSMGAG00000015085 #32	ENSMGAG00000015086 #33	ENSMGAG00000015083 #29	ENSMGAG00000021510 #29	ENSMGAG00000015082 #28	ENSMGAG00000015080 #26	ENSMGAG00000015076	ENSMGAG00000015077 #24	ENSMGAG00000018883 #23	ENSMGAG00000019954	ENSMGAG00000015074 #22	ENSMGAG00000015073 #21	ENSMGAG00000020190 ##19	ENSMGAG00000015070 #19	ENSMGAG00000015071 #20	RFC3 (ENSMGAG00000015069) #17	ENSMGAG00000015065 #14	ENSMGAG00000018289	ENSMGAG00000015063 #11	ENSMGAG00000015062 #10	SERTM1 (ENSMGAG00000021538) #9	ENSMGAG00000015060	ENSMGAG00000015058	ENSMGAG00000015057	ENSMGAG00000020411	ENSMGAG00000016944
Japanese quail	MODERN SPECIES		SUPT20H (ENSCJPG00005019888)	EXOSC8 (ENSCJPG00005019889)	ALG5 (ENSCJPG00005019890)	ENSCJPG00005019892	SERTM1 (ENSCJPG00005019893) #9	CCNA1 (ENSCJPG00005019896) #10	SPART (ENSCJPG00005019898) #11	ENSCJPG00005019899	DCLK1 (ENSCJPG00005019904) #14	NBEA (ENSCJPG00005019906) #15	MAB21L1 (ENSCJPG00005019912) #16	RFC3 (ENSCJPG00005019916) #17	STARD13 (ENSCJPG00005019919) #19	KL (ENSCJPG00005019920) #20	PDS5B (ENSCJPG00005019946) #21	ENSCJPG00005020411 #22	BRCA2 (ENSCJPG00005020412) #24	ENSCJPG00005020413	ZAR1L (ENSCJPG00005020414) #25	FRY (ENSCJPG00005020415) #26	B3GLCT (ENSCJPG00005020417) #28	HSPH1 (ENSCJPG00005020418) #29	ALOX5AP (ENSCJPG00005020419) #32	USPL1 (ENSCJPG00005020420) #33	ENSCJPG00005020423 #34	KATNAL1 (ENSCJPG00005020425) #35	UBL3 (ENSCJPG00005020426) #36	SLC7A1 (ENSCJPG00005020427) #37	MTUS2 (ENSCJPG00005020428)	SLC46A3 (ENSCJPG00005020429)	POMP (ENSCJPG00005020430)
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT01080000257332.A.a.a	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564.d #23	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00390000013549.a.a	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564.d #23	ENSGT00940000164462	ENSGT00940000161564.c #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37	ENSGT00950000183026.B
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00390000013549.a.a	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564.d #23	ENSGT00940000164462	ENSGT00940000161564.c #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37	ENSGT00950000183026.B
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00390000013549.a.a	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564.d #23	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00530000063860.b	ENSGT00390000013549.a.a	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564.d #23	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b
Common canary	MODERN SPECIES	4	EXOSC8 (ENSSCAG00000012567)	ALG5 (ENSSCAG00000012561)	ENSSCAG00000012558	RFXAP (ENSSCAG00000012534) #8	SERTM1 (ENSSCAG00000012515) #9	CCNA1 (ENSSCAG00000012496) #10	SPART (ENSSCAG00000012485) #11	ENSSCAG00000012477 #14	ENSSCAG00000012335 #14	MAB21L1 (ENSSCAG00000012293) #16	NBEA (ENSSCAG00000010171) #15	RFC3 (ENSSCAG00000009827) #17	STARD13 (ENSSCAG00000008920) #19	KL (ENSSCAG00000008757) #20	PDS5B (ENSSCAG00000008707) #21	N4BP2L2 (ENSSCAG00000008691) #22	ENSSCAG00000008689 #23	ENSSCAG00000008685	BRCA2 (ENSSCAG00000008655) #24	FRY (ENSSCAG00000008591) #26	B3GLCT (ENSSCAG00000008506) #28	HSPH1 (ENSSCAG00000006925) #29	ALOX5AP (ENSSCAG00000006720) #32	USPL1 (ENSSCAG00000006715) #33	ENSSCAG00000006705 #34	KATNAL1 (ENSSCAG00000006695) #35	UBL3 (ENSSCAG00000006691) #36	SLC7A1 (ENSSCAG00000006665) #37	MTUS2 (ENSSCAG00000006627)	ENSSCAG00000006607	SLC46A3 (ENSSCAG00000006605)
Zebra finch	MODERN SPECIES		EXOSC8 (ENSTGUG00000022331)	ALG5 (ENSTGUG00000011903)	ENSTGUG00000011897	RFXAP (ENSTGUG00000023849) #8	SERTM1 (ENSTGUG00000025328) #9	CCNA1 (ENSTGUG00000011881) #10	SPART (ENSTGUG00000011877) #11	DCLK1 (ENSTGUG00000011857) #14	NBEA (ENSTGUG00000011819) #15	MAB21L1 (ENSTGUG00000011855) #16	RFC3 (ENSTGUG00000011814) #17	STARD13 (ENSTGUG00000011803) #19	ENSTGUG00000011800 #20	ENSTGUG00000029436 #20	PDS5B (ENSTGUG00000011779) #21	ENSTGUG00000011776 #22	ENSTGUG00000025842	BRCA2 (ENSTGUG00000011763) #24	ZAR1L (ENSTGUG00000011760) #25	FRY (ENSTGUG00000011735) #26	B3GLCT (ENSTGUG00000011725) #28	HSPH1 (ENSTGUG00000011712) #29	ALOX5AP (ENSTGUG00000011710) #32	USPL1 (ENSTGUG00000011708) #33	HMGB1 (ENSTGUG00000022860) #34	KATNAL1 (ENSTGUG00000011690) #35	UBL3 (ENSTGUG00000023373) #36	SLC7A1 (ENSTGUG00000011671) #37	MTUS2 (ENSTGUG00000011664)	SLC46A3 (ENSTGUG00000011660)	POMP (ENSTGUG00000019231)
Medium ground finch	MODERN SPECIES	115						CCNA1 (ENSGFOG00000014436) #10	SPART (ENSGFOG00000014440) #11	ENSGFOG00000014441	DCLK1 (ENSGFOG00000014445) #14	NBEA (ENSGFOG00000014486) #15	MAB21L1 (ENSGFOG00000014574) #16	RFC3 (ENSGFOG00000014579) #17	STARD13 (ENSGFOG00000014592) #19	KL (ENSGFOG00000014609) #20	PDS5B (ENSGFOG00000014620) #21	ENSGFOG00000014625 #22	ENSGFOG00000014627	BRCA2 (ENSGFOG00000014630) #24	ZAR1L (ENSGFOG00000014632) #25	FRY (ENSGFOG00000014661) #26	B3GLCT (ENSGFOG00000014706) #28	HSPH1 (ENSGFOG00000014719) #29	ALOX5AP (ENSGFOG00000014724) #32	ENSGFOG00000014725	USPL1 (ENSGFOG00000014727) #33	ENSGFOG00000014729 #34	KATNAL1 (ENSGFOG00000014730) #35
Flycatcher	MODERN SPECIES		ALG5 (ENSFALG00000023840)	ENSFALG00000008280	RFXAP (ENSFALG00000027286) #8	SERTM1 (ENSFALG00000014771) #9	CCNA1 (ENSFALG00000008304) #10	SPART (ENSFALG00000008320) #11	ENSFALG00000008328	DCLK1 (ENSFALG00000008330) #14	NBEA (ENSFALG00000008342) #15	MAB21L1 (ENSFALG00000027361) #16	RFC3 (ENSFALG00000008377) #17	STARD13 (ENSFALG00000008396) #19	ENSFALG00000024422 #20	PDS5B (ENSFALG00000008419) #21	ENSFALG00000022968 #23	N4BP2L2 (ENSFALG00000028428) #22	N4BP2L1 (ENSFALG00000028257) #23	BRCA2 (ENSFALG00000008451) #24	ZAR1L (ENSFALG00000008466) #25	FRY (ENSFALG00000008469) #26	B3GLCT (ENSFALG00000008485) #28	HSPH1 (ENSFALG00000008492) #29	ALOX5AP (ENSFALG00000008494) #32	USPL1 (ENSFALG00000008499) #33	ENSFALG00000008507 #34	KATNAL1 (ENSFALG00000008512) #35	UBL3 (ENSFALG00000008516) #36	SLC7A1 (ENSFALG00000008521) #37	MTUS2 (ENSFALG00000008535)	SLC46A3 (ENSFALG00000008538)	POMP (ENSFALG00000008541)
Great tit	MODERN SPECIES		EXOSC8 (ENSPMJG00000015004)	ALG5 (ENSPMJG00000015005)	ENSPMJG00000015006	RFXAP (ENSPMJG00000015007) #8	SERTM1 (ENSPMJG00000015008) #9	CCNA1 (ENSPMJG00000015010) #10	SPART (ENSPMJG00000015011) #11	DCLK1 (ENSPMJG00000015012) #14	ENSPMJG00000015013	ENSPMJG00000015014	NBEA (ENSPMJG00000015015) #15	RFC3 (ENSPMJG00000015017) #17	STARD13 (ENSPMJG00000015018) #19	ENSPMJG00000015019 #20	PDS5B (ENSPMJG00000015020) #21	ENSPMJG00000015021 #22	ENSPMJG00000015022	BRCA2 (ENSPMJG00000015023) #24	ZAR1L (ENSPMJG00000015024) #25	FRY (ENSPMJG00000015047) #26	B3GLCT (ENSPMJG00000017445) #28	HSPH1 (ENSPMJG00000017446) #29	ALOX5AP (ENSPMJG00000017448) #32	USPL1 (ENSPMJG00000017450) #33	ENSPMJG00000017453 #34	KATNAL1 (ENSPMJG00000017454) #35	UBL3 (ENSPMJG00000017458) #36	SLC7A1 (ENSPMJG00000017459) #37	MTUS2 (ENSPMJG00000017469)	SLC46A3 (ENSPMJG00000017471)	POMP (ENSPMJG00000017472)
Neognathae_c	ANCESTRAL SPECIES	11	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT01080000257332.A.a.a	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564.d #23	ENSGT00940000164462	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b
Kakapo	MODERN SPECIES	11	ALG5 (ENSSHBG00005004162)	SMAD9 (ENSSHBG00005004185) #7	RFXAP (ENSSHBG00005004249) #8	SERTM1 (ENSSHBG00005004260) #9	CCNA1 (ENSSHBG00005004268) #10	SPART (ENSSHBG00005004292) #11	ENSSHBG00005004298	DCLK1 (ENSSHBG00005004306) #14	NBEA (ENSSHBG00005004755) #15	MAB21L1 (ENSSHBG00005012438) #16	RFC3 (ENSSHBG00005012453) #17	ENSSHBG00005012475	STARD13 (ENSSHBG00005012611) #19	ENSSHBG00005013763 #20	PDS5B (ENSSHBG00005013790) #21	N4BP2L2 (ENSSHBG00005013802) #22	ENSSHBG00005013809 #23	ENSSHBG00005013829	BRCA2 (ENSSHBG00005013855) #24	ZAR1L (ENSSHBG00005014049) #25	FRY (ENSSHBG00005014192) #26	B3GLCT (ENSSHBG00005014739) #28	HSPH1 (ENSSHBG00005015715) #29	ALOX5AP (ENSSHBG00005015727) #32	USPL1 (ENSSHBG00005015735) #33	ENSSHBG00005015756 #34	KATNAL1 (ENSSHBG00005015762) #35	UBL3 (ENSSHBG00005015767) #36	SLC7A1 (ENSSHBG00005015784) #37	MTUS2 (ENSSHBG00005015801)	SLC46A3 (ENSSHBG00005009851)
Golden eagle	MODERN SPECIES	10	EXOSC8 (ENSACCG00020013847)	ALG5 (ENSACCG00020013873)	ENSACCG00020013931	SERTM1 (ENSACCG00020013956) #9	CCNA1 (ENSACCG00020013966) #10	SPART (ENSACCG00020013992) #11	ENSACCG00020014019	DCLK1 (ENSACCG00020014070) #14	NBEA (ENSACCG00020014155) #15	MAB21L1 (ENSACCG00020014196) #16	ENSACCG00020014208	RFC3 (ENSACCG00020014231) #17	STARD13 (ENSACCG00020014277) #19	KL (ENSACCG00020014308) #20	PDS5B (ENSACCG00020014344) #21	ENSACCG00020014403 #22	ENSACCG00020014431	BRCA2 (ENSACCG00020014462) #24	ZAR1L (ENSACCG00020014519) #25	FRY (ENSACCG00020014960) #26	B3GLCT (ENSACCG00020015407) #28	HSPH1 (ENSACCG00020015450) #29	ENSACCG00020015479	ALOX5AP (ENSACCG00020015490) #32	USPL1 (ENSACCG00020015509) #33	ENSACCG00020015526 #34	KATNAL1 (ENSACCG00020015538) #35	UBL3 (ENSACCG00020015554) #36	SLC7A1 (ENSACCG00020015572) #37	MTUS2 (ENSACCG00020015600)	SLC46A3 (ENSACCG00020015624)
African ostrich	MODERN SPECIES	1023	SUPT20H (ENSSCUG00000013378)	EXOSC8 (ENSSCUG00000013382)	ALG5 (ENSSCUG00000013383)	SMAD9 (ENSSCUG00000013384) #7	SERTM1 (ENSSCUG00000013386) #9	CCNA1 (ENSSCUG00000013389) #10	SPART (ENSSCUG00000013391) #11	ENSSCUG00000013392	DCLK1 (ENSSCUG00000013393) #14	NBEA (ENSSCUG00000013717) #15	MAB21L1 (ENSSCUG00000014455) #16	ENSSCUG00000014464	RFC3 (ENSSCUG00000014468) #17	STARD13 (ENSSCUG00000014475) #19	PDS5B (ENSSCUG00000014504) #21	ENSSCUG00000014518 #22	ENSSCUG00000014525	BRCA2 (ENSSCUG00000014528) #24	ZAR1L (ENSSCUG00000014533) #25	FRY (ENSSCUG00000014593) #26	ENSSCUG00000014652 #27	B3GLCT (ENSSCUG00000014653) #28	HSPH1 (ENSSCUG00000014684) #29	ENSSCUG00000014800	ALOX5AP (ENSSCUG00000014811) #32	USPL1 (ENSSCUG00000014817) #33	ENSSCUG00000014823 #34	KATNAL1 (ENSSCUG00000014834) #35	UBL3 (ENSSCUG00000014850) #36	SLC7A1 (ENSSCUG00000014867) #37	MTUS2 (ENSSCUG00000014886)
Australian saltwater crocodile	MODERN SPECIES	27	SUPT20H (ENSCPRG00005005145)	EXOSC8 (ENSCPRG00005005183)	ALG5 (ENSCPRG00005005226)	ENSCPRG00005005247	SERTM1 (ENSCPRG00005005297) #9	CCNA1 (ENSCPRG00005005315) #10	SPART (ENSCPRG00005005334) #11	ENSCPRG00005005360	DCLK1 (ENSCPRG00005005403) #14	NBEA (ENSCPRG00005005458) #15	MAB21L1 (ENSCPRG00005005536) #16	RFC3 (ENSCPRG00005005604) #17	STARD13 (ENSCPRG00005005707) #19	KL (ENSCPRG00005005721) #20	PDS5B (ENSCPRG00005005806) #21	ENSCPRG00005005905 #22	ENSCPRG00005005920	BRCA2 (ENSCPRG00005005931) #24	ENSCPRG00005005962	ENSCPRG00005005966	ZAR1L (ENSCPRG00005005969) #25	FRY (ENSCPRG00005006597) #26	RXFP2 (ENSCPRG00005011524) #27	B3GLCT (ENSCPRG00005011578) #28	HSPH1 (ENSCPRG00005011679) #29	ENSCPRG00005011697	ENSCPRG00005011705	ENSCPRG00005011707	MEDAG (ENSCPRG00005011713) #31	ALOX5AP (ENSCPRG00005011719) #32	USPL1 (ENSCPRG00005011746) #33
Cryptodira	ANCESTRAL SPECIES		ENSGT00940000154391.a.b.e	ENSGT00940000163092 #7	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Chinese turtle	MODERN SPECIES	1956						ENSPSIG00000012672 #14	MAB21L1 (ENSPSIG00000000749) #16	NBEA (ENSPSIG00000009221) #15	ENSPSIG00000009139	ENSPSIG00000009088	RFC3 (ENSPSIG00000008150) #17	ENSPSIG00000008131	STARD13 (ENSPSIG00000007333) #19	KL (ENSPSIG00000007326) #20	PDS5B (ENSPSIG00000006312) #21	ENSPSIG00000006247 #22
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00940000154391.a.b.e	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235.a #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B.f #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B.e #15	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614.c.a #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000154391.a.b.e	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235.a #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B.f #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B.e #15	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT00390000004147.b	ENSGT00940000157614.c.a #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	836														ENSCABG00000020389 #20	PDS5B (ENSCABG00000020443) #21	ENSCABG00000021290 #22	ENSCABG00000021291 #22	N4BP2L1 (ENSCABG00000021292) #23
Abingdon island giant tortoise	MODERN SPECIES	836													ENSCABG00000020389 #20	PDS5B (ENSCABG00000020443) #21	ENSCABG00000021290 #22	ENSCABG00000021291 #22	N4BP2L1 (ENSCABG00000021292) #23
Goode s thornscrub tortoise	MODERN SPECIES		ENSGEVG00005002631	RFXAP (ENSGEVG00005002595) #8	ENSGEVG00005002585	SERTM1 (ENSGEVG00005002577) #9	CCNA1 (ENSGEVG00005002565) #10	SPART (ENSGEVG00005002510) #11	ENSGEVG00005002498	MAB21L1 (ENSGEVG00005002472) #16	NBEA (ENSGEVG00005002417) #15	ENSGEVG00005002362	RFC3 (ENSGEVG00005002352) #17	ENSGEVG00005002342	STARD13 (ENSGEVG00005002320) #19	KL (ENSGEVG00005002226) #20	PDS5B (ENSGEVG00005002104) #21	ENSGEVG00005002030 #22	N4BP2L1 (ENSGEVG00005002015) #23	BRCA2 (ENSGEVG00005001942) #24	ZAR1L (ENSGEVG00005001897) #25	ENSGEVG00005001882 #26	ENSGEVG00005001857 #26	ENSGEVG00005001840 #26	B3GLCT (ENSGEVG00005001778) #28	HSPH1 (ENSGEVG00005001710) #29	ENSGEVG00005001666	TEX26 (ENSGEVG00005001648) #30	ALOX5AP (ENSGEVG00005001628) #32	USPL1 (ENSGEVG00005001581) #33	ENSGEVG00005001495 #34	KATNAL1 (ENSGEVG00005001464) #35	UBL3 (ENSGEVG00005001443) #36
Emydidae	ANCESTRAL SPECIES	19	ENSGT00940000155437.gc.a	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235.a #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B.f #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B.e #15	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614.c.a #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000158948.b #27	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES		ALG5 (ENSCPBG00000003180)	ENSCPBG00000003195	RFXAP (ENSCPBG00000003212) #8	SERTM1 (ENSCPBG00000003243) #9	CCNA1 (ENSCPBG00000003264) #10	ENSCPBG00000003301 #11	ENSCPBG00000003325	DCLK1 (ENSCPBG00000003355) #14	NBEA (ENSCPBG00000003439) #15	MAB21L1 (ENSCPBG00000003514) #16	ENSCPBG00000003543	RFC3 (ENSCPBG00000003552) #17	STARD13 (ENSCPBG00000003585) #19	ENSCPBG00000003622 #20	PDS5B (ENSCPBG00000003669) #21	ENSCPBG00000003734 #22	ENSCPBG00000003759 #22	N4BP2L1 (ENSCPBG00000003771) #23	BRCA2 (ENSCPBG00000003790) #24	ZAR1L (ENSCPBG00000003846) #25	FRY (ENSCPBG00000005512) #26	ENSCPBG00000020403 #27	B3GLCT (ENSCPBG00000020407) #28	HSPH1 (ENSCPBG00000020414) #29	ENSCPBG00000020420	TEX26 (ENSCPBG00000020423) #30	MEDAG (ENSCPBG00000020425) #31	ALOX5AP (ENSCPBG00000020426) #32	USPL1 (ENSCPBG00000020428) #33	ENSCPBG00000020432 #34	KATNAL1 (ENSCPBG00000020433) #35
painted turtle	MODERN SPECIES		ENSCPBG00000003195	RFXAP (ENSCPBG00000003212) #8	SERTM1 (ENSCPBG00000003243) #9	CCNA1 (ENSCPBG00000003264) #10	ENSCPBG00000003301 #11	ENSCPBG00000003325	DCLK1 (ENSCPBG00000003355) #14	NBEA (ENSCPBG00000003439) #15	MAB21L1 (ENSCPBG00000003514) #16	ENSCPBG00000003543	RFC3 (ENSCPBG00000003552) #17	STARD13 (ENSCPBG00000003585) #19	ENSCPBG00000003622 #20	PDS5B (ENSCPBG00000003669) #21	ENSCPBG00000003734 #22	ENSCPBG00000003759 #22	N4BP2L1 (ENSCPBG00000003771) #23	BRCA2 (ENSCPBG00000003790) #24	ZAR1L (ENSCPBG00000003846) #25	FRY (ENSCPBG00000005512) #26	ENSCPBG00000020403 #27	B3GLCT (ENSCPBG00000020407) #28	HSPH1 (ENSCPBG00000020414) #29	ENSCPBG00000020420	TEX26 (ENSCPBG00000020423) #30	MEDAG (ENSCPBG00000020425) #31	ALOX5AP (ENSCPBG00000020426) #32	USPL1 (ENSCPBG00000020428) #33	ENSCPBG00000020432 #34	KATNAL1 (ENSCPBG00000020433) #35	UBL3 (ENSCPBG00000020434) #36
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	66	ENSTMTG00000019865 #8	ENSTMTG00000019861 #9	ENSTMTG00000019846 #10	ENSTMTG00000019838 #11	ENSTMTG00000019830	ENSTMTG00000019816 #14	ENSTMTG00000019756 #14	ENSTMTG00000019665 #15	ENSTMTG00000019653 #16	ENSTMTG00000019576 #15	ENSTMTG00000019530	ENSTMTG00000019480 #17	ENSTMTG00000018756 #19	ENSTMTG00000018652 #20	ENSTMTG00000018093 #21	ENSTMTG00000018017 #22	ENSTMTG00000018001 #23	ENSTMTG00000017700 #24	ENSTMTG00000017610 #25	ENSTMTG00000017481 #26	ENSTMTG00000017457 #26	ENSTMTG00000017425 #28	ENSTMTG00000017377 #29	ENSTMTG00000017339	ENSTMTG00000017322	ENSTMTG00000017306 #31	ENSTMTG00000017295 #32	ENSTMTG00000017281 #33	ENSTMTG00000017266 #34	ENSTMTG00000017086 #35	ENSTMTG00000017063 #36
Three-toed box turtle	MODERN SPECIES	67	ENSTMTG00000012470	ENSTMTG00000012440 #8	ENSTMTG00000012430 #9	ENSTMTG00000012395 #10	ENSTMTG00000012341 #11	ENSTMTG00000012325	ENSTMTG00000012305 #14	ENSTMTG00000012116 #14	ENSTMTG00000012094 #16	ENSTMTG00000011919 #15	ENSTMTG00000011875	ENSTMTG00000011823 #17	ENSTMTG00000010074 #19	ENSTMTG00000009759 #20	ENSTMTG00000009385 #21	ENSTMTG00000009307 #22	ENSTMTG00000009293 #23	ENSTMTG00000008873 #24	ENSTMTG00000008820 #25	ENSTMTG00000007386 #26	ENSTMTG00000007254 #27	ENSTMTG00000006967 #28	ENSTMTG00000006768 #29	ENSTMTG00000006703	TEX26 (ENSTMTG00000006652) #30	ENSTMTG00000006577 #31	ENSTMTG00000006555 #32	ENSTMTG00000006543 #33	ENSTMTG00000006532 #34	ENSTMTG00000006340 #35	ENSTMTG00000006312 #36
Anura	ANCESTRAL SPECIES	27	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00940000154391.a.b	ENSGT00390000006573 #8	ENSGT00390000016881 #9	ENSGT00940000157940 #10	ENSGT00390000012235 #11	ENSGT00940000165436	ENSGT00940000154956 #14	ENSGT00940000154934.B #15	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #19	ENSGT00940000157614 #20	ENSGT00940000157257 #21	ENSGT00940000161440 #22	ENSGT00940000161564 #23	ENSGT00390000003602 #24	ENSGT00390000012305.b #25	ENSGT00610000086058.b #26	ENSGT00940000155499 #28	ENSGT00940000159635 #29	ENSGT00940000162967	ENSGT00390000009484 #30	ENSGT00390000018451 #31	ENSGT00940000158706 #32	ENSGT00390000002316 #33	ENSGT00950000183120 #34	ENSGT00940000156630 #35	ENSGT00390000004952.b #36	ENSGT00940000155349 #37
Frog	MODERN SPECIES	2	smad9 (ENSXETG00000001820)	rfxap (ENSXETG00000001824) #8	sertm1 (ENSXETG00000041988) #9	ccna1 (ENSXETG00000013224) #10	spart (ENSXETG00000032577) #11	ccdc169 (ENSXETG00000030268)	dclk1 (ENSXETG00000017114) #14	nbea (ENSXETG00000026016) #15	mab21l1 (ENSXETG00000017124) ##16	ENSXETG00000045269	trmt9b (ENSXETG00000016909)	rfc3 (ENSXETG00000016918) #17	stard13 (ENSXETG00000016928) #19	kl (ENSXETG00000016972) #20	pds5b (ENSXETG00000017000) #21	n4bp2l2 (ENSXETG00000037890) #22	N4BP2L1 (ENSXETG00000036678) #23	brca2 (ENSXETG00000017011) #24	zar2 (ENSXETG00000036129) #25	fry (ENSXETG00000033712) #26	rxfp2 (ENSXETG00000019186) #27	b3glct (ENSXETG00000019184) #28	ENSXETG00000049277	hsph1 (ENSXETG00000019175) #29	ENSXETG00000019172	medag (ENSXETG00000038244) #31	tex26 (ENSXETG00000019168) #30	ENSXETG00000026002 #31	alox5ap (ENSXETG00000026001) #32	uspl1 (ENSXETG00000039559) #33	hmgb1 (ENSXETG00000019166) #34
Coelacanth	MODERN SPECIES	1391															PDS5B (ENSLACG00000010011) #21	N4BP2L2 (ENSLACG00000009275) #22	ENSLACG00000022226	ENSLACG00000007788 #24	ZAR1L (ENSLACG00000007099) #25	FRY (ENSLACG00000001219) #26
Actinopterygii	ANCESTRAL SPECIES	58	ENSGT00940000154868.b	ENSGT00970000197371	ENSGT00940000155719.a.d	ENSGT00940000156630 #35	ENSGT00950000183120 #34	ENSGT00390000002316 #33	ENSGT00940000158706 #32	ENSGT00390000018451 #31	ENSGT00390000009484 #30	ENSGT00940000159635 #29	ENSGT00940000155499 #28	ENSGT00940000158948.b #27	ENSGT00610000086058.b #26	ENSGT00390000012305.b #25	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00940000157257 #21	ENSGT00940000157614 #20	ENSGT00950000183061.a.b.b ##19	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT00940000166005	ENSGT00940000154934.A ##15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956 #14	ENSGT00940000165436	ENSGT00390000012235 #11	ENSGT00940000157940 #10	ENSGT00390000016881 #9
Reedfish	MODERN SPECIES	12	hmgb1b (ENSECRG00000004131) #34	USPL1 (ENSECRG00000004121) #33	alox5ap (ENSECRG00000004114) #32	ENSECRG00000004106 #31	MEDAG (ENSECRG00000004100) #31	ENSECRG00000004094 #30	ENSECRG00000004074	HSPH1 (ENSECRG00000004057) #29	ENSECRG00000004049 #29	ENSECRG00000004045 #29	b3glcta (ENSECRG00000004033) #28	ENSECRG00000004026 #27	FRY (ENSECRG00000003956) #26	zar1l (ENSECRG00000003916) #25	ENSECRG00000001857 #24	ENSECRG00000001524 #22	ENSECRG00000001497	PDS5B (ENSECRG00000001433) #21	KL (ENSECRG00000001393) #20	ENSECRG00000001349 ##19	rfc3 (ENSECRG00000001309) #17	trmt9b (ENSECRG00000001271)	ENSECRG00000001186	ENSECRG00000001111	ENSECRG00000001083	ENSECRG00000001070 ##15	mab21l1 (ENSECRG00000001052) #16	NBEA (ENSECRG00000000982) #15	dclk1a (ENSECRG00000000921) #14	ENSECRG00000000901	spartb (ENSECRG00000000868) #11
Neopterygii	ANCESTRAL SPECIES	52	ENSGT00940000154868.b	ENSGT00970000197371	ENSGT00940000155719.a.d	ENSGT00940000156630 #35	ENSGT00950000183120 #34	ENSGT00390000002316 #33	ENSGT00940000158706 #32	ENSGT00390000018451 #31	ENSGT00390000009484 #30	ENSGT00940000159635 #29	ENSGT00940000155499 #28	ENSGT00390000012305.b #25	ENSGT00940000158948.b #27	ENSGT00610000086058.b #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000164462	ENSGT00940000157257 #21	ENSGT00940000157614 #20	ENSGT00950000183061.a.b.b ##19	ENSGT00940000165093	ENSGT00550000075006 #17	ENSGT00940000166005	ENSGT00940000154934.A ##15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956 #14	ENSGT00940000165436	ENSGT00390000012235 #11	ENSGT00940000157940 #10	ENSGT00390000016881 #9
Spotted gar	MODERN SPECIES	669	ENSLOCG00000018027	ENSLOCG00000008064	ENSLOCG00000018029	ENSLOCG00000008076	or71aq1 (ENSLOCG00000018031)	ENSLOCG00000018033	ENSLOCG00000008091	ENSLOCG00000018035	ENSLOCG00000008108	ENSLOCG00000018037	ENSLOCG00000008120	rxfp2a (ENSLOCG00000008133) #27	FRY (ENSLOCG00000008150) #26	zar1l (ENSLOCG00000008190) #25	ENSLOCG00000008205 #24	ENSLOCG00000008230 #22	ENSLOCG00000008241	PDS5B (ENSLOCG00000008252) #21	KL (ENSLOCG00000008273) #20	ENSLOCG00000008293 ##19	ENSLOCG00000008308	rfc3 (ENSLOCG00000008321) #17	trmt9b (ENSLOCG00000008334)	NBEA (ENSLOCG00000008354) #15	mab21l1 (ENSLOCG00000018039) #16	dclk1a (ENSLOCG00000008398) #14	ENSLOCG00000008416	ENSLOCG00000008425	spartb (ENSLOCG00000008434) #11	ccna1 (ENSLOCG00000008456) #10	SERTM1 (ENSLOCG00000018041) #9
Osteoglossocephalai	ANCESTRAL SPECIES	68										ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000159635 #29	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000154934.A ##15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000155739	ENSGT00940000158338	ENSGT00940000160991.b	ENSGT00940000161735
Osteoglossiformes	ANCESTRAL SPECIES	24									ENSGT00940000155719.a.d	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000159635 #29	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000154934.B.bb #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B.cb #15	ENSGT00940000154956.sb.b #14	ENSGT00390000012235.l #11	ENSGT00940000157940 #10	ENSGT00390000016881 #9	ENSGT00390000006573 #8	ENSGT00940000154391.a.b	ENSGT00940000153481.C	ENSGT00950000183130.B	ENSGT00390000013549.a.a
P. kingsleyae	MODERN SPECIES	22	ENSPKIG00000000459	UBL3 (ENSPKIG00000000484) ##36	ENSPKIG00000000523	ENSPKIG00000000548	ENSPKIG00000000559	ENSPKIG00000000594 #30	ENSPKIG00000000658	ENSPKIG00000000711 #29	HSPH1 (ENSPKIG00000000734) #29	b3glcta (ENSPKIG00000000768) #28	ENSPKIG00000000807	rxfp2b (ENSPKIG00000000826) #27	FRY (ENSPKIG00000000890) #26	brca2 (ENSPKIG00000000986) #24	ENSPKIG00000001043	ENSPKIG00000001068 #22	ENSPKIG00000001108 #21	trmt9b (ENSPKIG00000001165)	ENSPKIG00000001189	ENSPKIG00000001278 ##19	NBEA (ENSPKIG00000001415) #15	ENSPKIG00000001502	mab21l1 (ENSPKIG00000001519) #16	dclk1b (ENSPKIG00000001591) #14	ENSPKIG00000001698	spartb (ENSPKIG00000001742) #11	postnb (ENSPKIG00000001922)	trpc4b (ENSPKIG00000002130)	zgc:64002 (ENSPKIG00000002164)	FREM2 (ENSPKIG00000002186)	ENSPKIG00000002309
Asian bonytongue	MODERN SPECIES	1	ENSSFOG00015029335	ENSSFOG00015027934	ENSSFOG00015027535	ENSSFOG00015024527	UBL3 (ENSSFOG00015029078) ##36	ENSSFOG00015029354	ENSSFOG00015025537	ENSSFOG00015002072	ENSSFOG00015027560	ENSSFOG00015002094	ENSSFOG00015001882	HSPH1 (ENSSFOG00015001796) #29	b3glcta (ENSSFOG00015001743) #28	FRY (ENSSFOG00015001517) #26	brca2 (ENSSFOG00015001499) #24	ENSSFOG00015001494 #22	trmt9b (ENSSFOG00015001486)	ENSSFOG00015001403 ##19	NBEA (ENSSFOG00015027808) #15	mab21l1 (ENSSFOG00015024915) #16	NBEA (ENSSFOG00015001148) #15	mab21l1 (ENSSFOG00015031160) #16	dclk1b (ENSSFOG00015001060) #14	spartb (ENSSFOG00015001022) #11	postnb (ENSSFOG00015000922)	trpc4b (ENSSFOG00015032893)	zgc:64002 (ENSSFOG00015025896)	FREM2 (ENSSFOG00015000661)	ENSSFOG00015000641	TRIM3 (ENSSFOG00015000589)	ENSSFOG00015000572
Clupeocephala	ANCESTRAL SPECIES	9	ENSGT00940000165744	ENSGT00390000000214.a.a.e	ENSGT00940000155158.r	ENSGT00390000004952.a.a ##36	ENSGT00940000161369.B.b.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a	ENSGT00950000183120.i.a #34	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000159635 #29	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000155739	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Otomorpha	ANCESTRAL SPECIES	2	ENSGT00940000163767.a.b	ENSGT00950000182847.b.a	ENSGT00950000182847.b.b.a.b.h	ENSGT00940000161369.B.b.b.q	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a	ENSGT00950000183120.i.a #34	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000159635 #29	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000177583	ENSGT00940000161440 #22	ENSGT00940000157257 #21	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B.eb #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000155739	ENSGT00940000158173.f	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Clupeiformes	ANCESTRAL SPECIES	202	ENSGT00940000163767.a.b	ENSGT00950000182847.b.a	ENSGT00940000161369.B.b.a.b	ENSGT00950000183120.i.a.g #34	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000159635 #29	ENSGT00940000155499.c #28	ENSGT00950000183120.i.a.h #34	ENSGT00940000158706 #32	ENSGT00940000155499.d #28	ENSGT00940000158948.b #27	ENSGT00610000086058.b.w.b #26	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00940000161440 #22	ENSGT00940000157257 #21	ENSGT00940000165093
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	10	rhoga (ENSDCDG00000032190)	CHRNA10 (ENSDCDG00000032189)	ENSDCDG00000032186	ENSDCDG00000032185	ENSDCDG00000032184	or40a1 (ENSDCDG00000032183)	or30bt1 (ENSDCDG00000032182)	ENSDCDG00000032181	hmgb1b (ENSDCDG00000032177) #34	ENSDCDG00000032165	ENSDCDG00000032156 #29	b3glcta (ENSDCDG00000031747) #28	rxfp2b (ENSDCDG00000031720) #27	FRY (ENSDCDG00000022258) #26	ENSDCDG00000021983	ENSDCDG00000021981 #22	PDS5B (ENSDCDG00000019575) #21	trmt9b (ENSDCDG00000019474)	ENSDCDG00000019472	ENSDCDG00000019471	ENSDCDG00000019470	or61a1 (ENSDCDG00000019466)	pgm2l1 (ENSDCDG00000019222)	abcg1 (ENSDCDG00000017391)	defbl3 (ENSDCDG00000017358)	spcs2 (ENSDCDG00000017353)	ENSDCDG00000017351	ENSDCDG00000017349	lipt2 (ENSDCDG00000017346)	C11orf87 (ENSDCDG00000017343)	eif4h (ENSDCDG00000017340)
Denticle herring	MODERN SPECIES	75															ENSDCDG00000007882	ENSDCDG00000007900 #22	ENSDCDG00000008389 #21	trmt9b (ENSDCDG00000015815)	ENSDCDG00000015819	ENSDCDG00000015823	ENSDCDG00000015825	pgm2l1 (ENSDCDG00000015865)	abcg1 (ENSDCDG00000016155)	defbl3 (ENSDCDG00000017402)	spcs2 (ENSDCDG00000017406)	ENSDCDG00000017419	ENSDCDG00000017424	lipt2 (ENSDCDG00000017432)
Atlantic herring	MODERN SPECIES	25	ENSCHAG00000016465	ENSCHAG00000016484	ENSCHAG00000016590	ENSCHAG00000016621	ENSCHAG00000016642	ENSCHAG00000016652	ENSCHAG00000016667	ENSCHAG00000016683	hmgb1b (ENSCHAG00000016701) #34	ENSCHAG00000016745 #30	ENSCHAG00000016830	b3glcta (ENSCHAG00000016929) #28	FRY (ENSCHAG00000017437) #26	ENSCHAG00000020000	ENSCHAG00000020009	ENSCHAG00000020076 #22	PDS5B (ENSCHAG00000020136) #21	trmt9b (ENSCHAG00000020696)	ENSCHAG00000020699	ENSCHAG00000020701	ENSCHAG00000020710	ENSCHAG00000020712	ENSCHAG00000020715	ENSCHAG00000020722	ENSCHAG00000020728	ENSCHAG00000020751	ENSCHAG00000020756	ENSCHAG00000020767	ENSCHAG00000020787	ENSCHAG00000020794	ENSCHAG00000020798
Otophysi	ANCESTRAL SPECIES	183								ENSGT00950000183630	ENSGT00940000165230.a	ENSGT00530000063869.A	ENSGT00510000048837	ENSGT00950000182894.C	ENSGT00940000180530	ENSGT00940000156538.b	ENSGT00940000166189	ENSGT00940000161440 #22	ENSGT00940000157257 #21	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B.eb #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000163671.a.a.b	ENSGT00390000003602 #24	ENSGT00610000086058.b.w.a #26
Characiphysae	ANCESTRAL SPECIES	70	ENSGT00390000002453.a	ENSGT00940000158096.e	ENSGT00940000166134	ENSGT00940000156163.i.a	ENSGT00940000159690.a	ENSGT00890000139503	ENSGT00940000157806.e	ENSGT00940000179201	ENSGT00950000183630	ENSGT00940000165230.a	ENSGT00530000063869.A	ENSGT00510000048837	ENSGT00950000182894.C	ENSGT00940000156538.b	ENSGT00940000166189	ENSGT00940000161440 #22	ENSGT00940000157257 #21	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B.eb #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000155739	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a
Characiphysae_b	ANCESTRAL SPECIES	81	ENSGT00390000002453.a	ENSGT00940000158096.e	ENSGT00940000166134	ENSGT00940000156163.i.a	ENSGT00940000159690.a	ENSGT00890000139503	ENSGT00940000157806.e	ENSGT00940000179201	ENSGT00950000183630	ENSGT00940000165230.a	ENSGT00530000063869.A	ENSGT00510000048837	ENSGT00950000182894.C	ENSGT00940000156538.b	ENSGT00940000166189	ENSGT00940000161440 #22	ENSGT00940000157257 #21	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B.eb #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000155739	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a
Characoidei	ANCESTRAL SPECIES	75	ENSGT00940000166439	ENSGT00390000002453.a	ENSGT00940000158096.e	ENSGT00940000166134	ENSGT00940000156163.i.a	ENSGT00940000159690.a	ENSGT00890000139503	ENSGT00940000157806.e	ENSGT00940000179201	ENSGT00950000183630	ENSGT00940000165230.a	ENSGT00530000063869.A	ENSGT00950000182894.C	ENSGT00940000156538.b	ENSGT00940000166189	ENSGT00940000161440 #22	ENSGT00940000157257 #21	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B.eb #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000155739	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a
Red-bellied piranha	MODERN SPECIES	635									tsku (ENSPNAG00000002058)	ENSPNAG00000011999	rap1gap2a (ENSPNAG00000011970)	xaf1 (ENSPNAG00000001984)	tekt1 (ENSPNAG00000011867)	inpp5ka (ENSPNAG00000005980)	ENSPNAG00000006294	ENSPNAG00000011775 #22	PDS5B (ENSPNAG00000011757) #21
Mexicana tetra	MODERN SPECIES	37															ENSAMXG00000011509	ENSAMXG00000011534 #22	ENSAMXG00000035782	PDS5B (ENSAMXG00000011649) #21	trmt9b (ENSAMXG00000029671)	ENSAMXG00000036083 ##19	NBEA (ENSAMXG00000035061) #15	mab21l1 (ENSAMXG00000025447) #16	dclk1b (ENSAMXG00000011924) #14	spartb (ENSAMXG00000011946) #11	postnb (ENSAMXG00000011985)	trpc4b (ENSAMXG00000008516)	frem2b (ENSAMXG00000012118)	ENSAMXG00000012282	TRIM3 (ENSAMXG00000012536)	ENSAMXG00000036770	arfip2a (ENSAMXG00000040228)
Cyprinoidei	ANCESTRAL SPECIES	4	ENSGT00440000033807	ENSGT00940000159770	ENSGT00940000157123	ENSGT00940000154546.a	ENSGT00980000198756	ENSGT00940000163868	ENSGT00940000165119	ENSGT00940000158360	ENSGT00950000183058.B	ENSGT01100000263535.a.b.e	ENSGT01100000263535.a.a.l	ENSGT00950000182894.C	ENSGT00940000180530	ENSGT00940000156538.b	ENSGT00940000166189	ENSGT00940000161440 #22	ENSGT00940000157257.m #21	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B.eb #15	ENSGT00940000154956.sb.a.a.b #14	ENSGT00940000154956.sb.a.a.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00950000182866.D.d.b.bb.a	ENSGT00940000155739	ENSGT00940000158173.f
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	69	ENSGT00940000154018.b.b.d	ENSGT00440000033807.a	ENSGT00940000159770.d	ENSGT00940000157123.k	ENSGT00940000154546.a.b	ENSGT00940000163868	ENSGT00980000198756	ENSGT00940000160835	ENSGT00940000165119.c	ENSGT00940000158360.ic.b.a	ENSGT00950000183058.B.s	ENSGT01100000263535.a.b.e.a	ENSGT01100000263535.a.a.l	ENSGT00950000182894.C.d	ENSGT00940000156538.b.d	ENSGT00940000161440.c #22	ENSGT00940000157257.m.a #21	ENSGT00940000165093.l
Cyprininae_a	ANCESTRAL SPECIES	38	ENSGT00390000006412.e	ENSGT00940000154018.b.b.d	ENSGT00440000033807.a	ENSGT00940000159770.d	ENSGT00940000157123.k	ENSGT00940000154546.a.b	ENSGT00980000198756	ENSGT00940000160835	ENSGT00940000165119.c	ENSGT00940000158360.ic.b.a	ENSGT00950000183058.B.s	ENSGT01100000263535.a.b.e.a	ENSGT01100000263535.a.a.l	ENSGT00950000182894.C.d	ENSGT00940000156538.b.d	ENSGT00940000161440.c #22	ENSGT00940000157257.m.a #21	ENSGT00940000165093.l	ENSGT00950000183061.a.b.a.a.b ##19	ENSGT01050000244827.C.c.a.b.a #16	ENSGT00940000154934.B.eb.c #15	ENSGT00940000154956.tb #14	ENSGT00940000154956.sb.a.a.a #14	ENSGT00390000012235.k.g #11	ENSGT00530000063860.b.c.b	ENSGT01060000248594.e.b.a.e	ENSGT00940000155313.g.b.a	ENSGT00940000158173.f.e	ENSGT00940000155128.a.a.a.a.b	ENSGT00950000183040.A.a.c.a.b	ENSGT00940000163671.a.a.b.b
Common carp reference	MODERN SPECIES	26	etv1 (ENSCCRG00000050711)	arl4aa (ENSCCRG00000067279)	ENSCCRG00000082742	VWDE (ENSCCRG00000031994)	seraf (ENSCCRG00000051912)	lsr (ENSCCRG00000051823)	tmem106ba (ENSCCRG00000051910)	mag (ENSCCRG00000060488)	ENSCCRG00000077042	ENSCCRG00000024817	tekt1 (ENSCCRG00000056340)	inpp5ka (ENSCCRG00000072686)	tekt1 (ENSCCRG00000039786)	ENSCCRG00000044379	inpp5ka (ENSCCRG00000028350)	ENSCCRG00000053097 #22	PDS5B (ENSCCRG00000045855) #21	ENSCCRG00000070344	trmt9b (ENSCCRG00000050954)	ENSCCRG00000073769	ENSCCRG00000005523 ##19	NBEA (ENSCCRG00000064794) #15	mab21l1 (ENSCCRG00000057452) #16	dclk1b (ENSCCRG00000050742) #14	spartb (ENSCCRG00000055987) #11	postnb (ENSCCRG00000028951)	trpc4b (ENSCCRG00000052616)	frem2b (ENSCCRG00000028318)	ENSCCRG00000071649	ENSCCRG00000075128	ENSCCRG00000073845
Goldfish	MODERN SPECIES	6	ENSCARG00000015097	ENSCARG00000016037	rps5 (ENSCARG00000016046)	cab39 (ENSCARG00000016070)	itm2ca (ENSCARG00000016085)	lpar5b (ENSCARG00000016095)	gpr55a (ENSCARG00000016099)	kcnj13 (ENSCARG00000016108)	efhd1 (ENSCARG00000016122)	NGEF (ENSCARG00000016140)	gpr55a (ENSCARG00000016489)	mag (ENSCARG00000016498)	ENSCARG00000016519	tekt1 (ENSCARG00000016532)	inpp5ka (ENSCARG00000016618)	ENSCARG00000017897 #22	PDS5B (ENSCARG00000017951) #21	trmt9b (ENSCARG00000018104)	ENSCARG00000018151 ##19	NBEA (ENSCARG00000019012) #15	mab21l1 (ENSCARG00000022901) #16	dclk1b (ENSCARG00000022927) #14	spartb (ENSCARG00000023295) #11	postnb (ENSCARG00000023376)	trpc4b (ENSCARG00000023633)	frem2b (ENSCARG00000023701)	ENSCARG00000023791	TRIM3 (ENSCARG00000023821)	ENSCARG00000024003	arfip2a (ENSCARG00000024014)	ENSCARG00000024078
Cyprininae	ANCESTRAL SPECIES	14	ENSGT00390000006412.f	ENSGT00940000154018.b.b.c	ENSGT00440000033807.b	ENSGT00940000159770.c	ENSGT00940000157123.l	ENSGT00940000154546.a.a	ENSGT00990000204278	ENSGT00940000165119.d	ENSGT00940000158360.ic.b.b	ENSGT00950000183058.B.t	ENSGT01100000263535.a.b.e.b	ENSGT00950000182894.C.c	ENSGT00940000180530	ENSGT00940000156538.b.c	ENSGT00940000166189	ENSGT00940000161440.d #22	ENSGT00940000157257.m.b #21	ENSGT00940000165093.k	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a.a ##19	ENSGT00950000183061.a.b.a.a.b ##19	ENSGT00940000154934.B.eb.c #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B.eb.d #15	ENSGT00940000154956.sb.a.a.b #14	ENSGT00390000012235.k.h #11	ENSGT00530000063860.b.c.a	ENSGT01060000248594.e.b.a.f	ENSGT00940000155313.g.b.b	ENSGT00950000182866.D.d.b.bb.a.b	ENSGT00940000155739
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	34	lta (ENSCARG00000029107)	bag6 (ENSCARG00000028999)	tspan13a (ENSCARG00000028961)	ankmy2a (ENSCARG00000028499)	sostdc1a (ENSCARG00000028480)	MEOX2 (ENSCARG00000028458)	agmo (ENSCARG00000028436)	etv1 (ENSCARG00000027818)	arl4aa (ENSCARG00000027793)	tmem106ba (ENSCARG00000027784)	ENSCARG00000027777	mag (ENSCARG00000027761)	tekt1 (ENSCARG00000027742)	inpp5ka (ENSCARG00000027227)	ENSCARG00000027134	ENSCARG00000027123 #22	PDS5B (ENSCARG00000027071) #21	trmt9b (ENSCARG00000027032)	ENSCARG00000027014	ENSCARG00000026303 ##19	mab21l1 (ENSCARG00000026255) #16	NBEA (ENSCARG00000023189) #15	ENSCARG00000023025	DCLK1 (ENSCARG00000022638) #14	spartb (ENSCARG00000022616) #11	postnb (ENSCARG00000021685)	trpc4b (ENSCARG00000021619)	frem2b (ENSCARG00000021494)	ENSCARG00000021474	ENSCARG00000021466	ENSCARG00000021259
Goldfish	MODERN SPECIES	34	lta (ENSCARG00000065889)	bag6 (ENSCARG00000065820)	ENSCARG00000065808	tspan13a (ENSCARG00000065801)	ankmy2a (ENSCARG00000065596)	MEOX2 (ENSCARG00000065579)	agmo (ENSCARG00000065542)	etv1 (ENSCARG00000065257)	arl4aa (ENSCARG00000065233)	tmem106ba (ENSCARG00000065226)	ENSCARG00000065222	mag (ENSCARG00000065202)	tekt1 (ENSCARG00000065187)	inpp5ka (ENSCARG00000064935)	ENSCARG00000064820	ENSCARG00000064804 #22	PDS5B (ENSCARG00000062370) #21	trmt9b (ENSCARG00000062269)	timd4 (ENSCARG00000062260)	ENSCARG00000062213	tmem160 (ENSCARG00000062186)	NPAS1 (ENSCARG00000062140)	ARHGAP35 (ENSCARG00000062124)	ap2s1 (ENSCARG00000062039)	ENSCARG00000062033	rab4b (ENSCARG00000061971)	rhoub (ENSCARG00000061958)	rtn2a (ENSCARG00000061932)	ppm1na (ENSCARG00000061911)	ENSCARG00000061894	PTGIR (ENSCARG00000061886)
Cyprininae_a	ANCESTRAL SPECIES	41	ENSGT00940000154018.b.b.c	ENSGT00440000033807.b	ENSGT00940000159770.c	ENSGT00940000156768.pb	ENSGT00940000157123.l	ENSGT00940000154546.a.a	ENSGT00990000204278	ENSGT00940000165119.d	ENSGT00940000158360.ic.b.b	ENSGT00950000183058.B.t	ENSGT01100000263535.a.b.e.b	ENSGT00950000182894.C.c	ENSGT00940000180530	ENSGT00940000156538.b.c	ENSGT00940000166189	ENSGT00940000161440.d #22	ENSGT00940000157257.m.b #21	ENSGT00940000165093.k	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a.a ##19	ENSGT01050000244827.C.c.a.b.b #16	ENSGT00940000154934.B.eb.d #15	ENSGT00940000154956.sb.a.a.b #14	ENSGT00390000012235.k.h #11	ENSGT00530000063860.b.c.a	ENSGT01060000248594.e.b.a.f	ENSGT00940000155313.g.b.b	ENSGT00950000182866.D.d.b.bb.a.b	ENSGT00940000155739	ENSGT00940000158173.f.f	ENSGT00940000155128.a.a.a.a.a
Common carp reference	MODERN SPECIES	39	sostdc1a (ENSCCRG00000050611)	crppa (ENSCCRG00000050617)	agmo (ENSCCRG00000059350)	ENSCCRG00000037108	ENSCCRG00000080518	etv1 (ENSCCRG00000067182)	arl4aa (ENSCCRG00000057909)	seraf (ENSCCRG00000041659)	tmem106ba (ENSCCRG00000000450)	ENSCCRG00000000439	mag (ENSCCRG00000002727)	ENSCCRG00000028386	tekt1 (ENSCCRG00000061615)	inpp5ka (ENSCCRG00000029594)	ENSCCRG00000038342	ENSCCRG00000063992 #22	ENSCCRG00000024787 #21	trmt9b (ENSCCRG00000019765)	ENSCCRG00000055058	ENSCCRG00000047044 ##19	mab21l1 (ENSCCRG00000079533) #16	NBEA (ENSCCRG00000045289) #15	DCLK1 (ENSCCRG00000036118) #14	spartb (ENSCCRG00000035962) #11	postnb (ENSCCRG00000028986)	trpc4b (ENSCCRG00000028958)	frem2b (ENSCCRG00000059074)	ENSCCRG00000047915	ENSCCRG00000047922	ENSCCRG00000009420	ENSCCRG00000018460
Golden-line barbel	MODERN SPECIES	41	agmo (ENSSGRG00000019555)	DGKB (ENSSGRG00000019564)	etv1 (ENSSGRG00000019765)	arl4aa (ENSSGRG00000019768)	ENSSGRG00000019771	seraf (ENSSGRG00000019773)	tmem106ba (ENSSGRG00000019774)	ENSSGRG00000019775	lsr (ENSSGRG00000019777)	ENSSGRG00000019784	mag (ENSSGRG00000019788)	tekt1 (ENSSGRG00000019826)	ENSSGRG00000019829	inpp5ka (ENSSGRG00000019841)	ENSSGRG00000019874	ENSSGRG00000019876 #22	PDS5B (ENSSGRG00000019892) #21	trmt9b (ENSSGRG00000020088)	ENSSGRG00000020090 ##19	ENSSGRG00000020093 ##19	NBEA (ENSSGRG00000020401) #15	mab21l1 (ENSSGRG00000021012) #16	DCLK1 (ENSSGRG00000021014) #14	ENSSGRG00000021016 #14	spartb (ENSSGRG00000021020) #11	postnb (ENSSGRG00000021034)	trpc4b (ENSSGRG00000021121)	frem2b (ENSSGRG00000021122)
Zebrafish	MODERN SPECIES	6	crppa (ENSDARG00000005034)	MEOX2 (ENSDARG00000040911)	agmo (ENSDARG00000025595)	DGKB (ENSDARG00000027724)	etv1 (ENSDARG00000101959)	arl4aa (ENSDARG00000099918)	ENSDARG00000099361	ENSDARG00000101697	seraf (ENSDARG00000103443)	tmem106ba (ENSDARG00000101936)	lsr (ENSDARG00000099291)	mag (ENSDARG00000104023)	tekt1 (ENSDARG00000101331)	inpp5ka (ENSDARG00000099563)	ENSDARG00000100794	ENSDARG00000103507 #22	PDS5B (ENSDARG00000098897) #21	trmt9b (ENSDARG00000102636)	ENSDARG00000101422	ENSDARG00000098954 ##19	mab21l1 (ENSDARG00000102047) #16	NBEA (ENSDARG00000105184) #15	dclk1b (ENSDARG00000104664) #14	spartb (ENSDARG00000103457) #11	postnb (ENSDARG00000104267)	trpc4b (ENSDARG00000102017)	frem2b (ENSDARG00000102626)	ENSDARG00000099796	ENSDARG00000100716	ENSDARG00000079221	ENSDARG00000079290
Euteleosteomorpha	ANCESTRAL SPECIES	7	ENSGT00940000163767.a.b	ENSGT00950000182847.b.a	ENSGT00950000182847.b.b.a.b.h	ENSGT00940000161454	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a	ENSGT00970000197371	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Protacanthopterygii	ANCESTRAL SPECIES	326															ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000157257.t #21
Salmoninae	ANCESTRAL SPECIES	549															ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093.h	ENSGT00720000108834.c	ENSGT00940000165072.h	ENSGT00940000159041.g	ENSGT00940000153936.a.f	ENSGT00940000157650.wb	ENSGT00390000013063.u.f	ENSGT01050000244976.b.b.b.b.d	ENSGT00940000155929.a.a.d.a	ENSGT01090000260076.a.ab	ENSGT00950000183084.b.b	ENSGT00510000047914.b.f	ENSGT00510000047914.a.a.c	ENSGT00940000166749	ENSGT00940000161579
Huchen	MODERN SPECIES	454									ENSHHUG00000036964	ABCF3 (ENSHHUG00000036943)	hmgb1b (ENSHHUG00000036922) #34	ENSHHUG00000036872	ENSHHUG00000036858	b3glcta (ENSHHUG00000036839) #28	FRY (ENSHHUG00000036365) #26	ENSHHUG00000036346 #22	ENSHHUG00000036299 #21
Salmoninae_a	ANCESTRAL SPECIES	19	ENSGT00390000003912	ENSGT00730000111053.f	ENSGT00940000161729.m.b	ENSGT00940000165683.c	ENSGT00940000159223.c.h	ENSGT00950000182903.a.a.c.g	ENSGT00940000160400	ENSGT00940000155470.b.q.a	ENSGT00390000016972.h.b	ENSGT00940000158330.z	ENSGT00940000155604.o.a	ENSGT00950000183120.i.a.a #34	ENSGT00940000162967	ENSGT00940000155499.c.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000161440 #22	ENSGT00940000165093.g	ENSGT00940000156389.b	ENSGT00720000108834.d	ENSGT00940000165072.g	ENSGT00940000159041.h	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a.e	ENSGT00940000157650.vb	ENSGT00390000013063.u.e	ENSGT01050000244976.b.b.b.b.c	ENSGT00940000155929.a.a.d.b	ENSGT00940000153270.b.b.c	ENSGT00390000001750	ENSGT00510000047914.b.e	ENSGT00510000047914.a.a.d
Oncorhynchus	ANCESTRAL SPECIES	24	ENSGT01030000234590.A.a.a	ENSGT00940000153680.a	ENSGT00940000158551	ENSGT01100000263495.A.a.b.b.a.a.b.b.b.b.b.b.a.b.a.a.a.a.a.b	ENSGT00940000153582.a.m.a.a.b.b.b.b.b.a.b.b.a.a.b.b.b	ENSGT00940000153582.a.m.a.a.b.b.b.b.b.a.b.b.b.b.d.a	ENSGT00940000160400	ENSGT00940000155470.b.q.a	ENSGT00390000016972.h.b	ENSGT00940000158330.z	ENSGT00940000155604.o.a	ENSGT00950000183120.i.a.a #34	ENSGT00940000162967	ENSGT00940000155499.c.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000161440 #22	ENSGT00940000165093.g	ENSGT00940000156389.b.b	ENSGT00720000108834.d	ENSGT00940000165072.g	ENSGT00940000159041.h	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a.e	ENSGT00390000013063.u.e	ENSGT01050000244976.b.b.b.b.c	ENSGT00940000155929.a.a.d.b	ENSGT00940000153270.b.b.c	ENSGT00390000001750	ENSGT00510000047914.b.e	ENSGT00510000047914.a.a.d	ENSGT00940000153991.a.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	59	ENSGT01030000234590.A.a.a	ENSGT00940000153680.a	ENSGT00940000158551	ENSGT01100000263495.A.a.b.b.a.a.b.b.b.b.b.b.a.b.a.a.a.a.a.b	ENSGT00940000153582.a.m.a.a.b.b.b.b.b.a.b.b.a.a.b.b.b	ENSGT00940000153582.a.m.a.a.b.b.b.b.b.a.b.b.b.b.d.a	ENSGT00940000160400	ENSGT00940000155470.b.q.a	ENSGT00390000016972.h.b	ENSGT00940000158330.z	ENSGT00940000155604.o.a	ENSGT00950000183120.i.a.a #34	ENSGT00940000162967	ENSGT00940000155499.c.c #28	ENSGT00610000086058.b.w.a.i #26	ENSGT00940000161440 #22	ENSGT00940000165093.g	ENSGT00940000156389.b.b	ENSGT00720000108834.d	ENSGT00940000165072.g	ENSGT00940000159041.h	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a.e	ENSGT00390000013063.u.e	ENSGT01050000244976.b.b.b.b.c	ENSGT00940000155929.a.a.d.b	ENSGT00940000153270.b.b.c	ENSGT00390000001750	ENSGT00510000047914.b.e	ENSGT00510000047914.a.a.d	ENSGT00940000153991.a.b.b
Chinook salmon	MODERN SPECIES	4	fkrp (ENSOTSG00005001620)	slc1a5 (ENSOTSG00005043684)	ENSOTSG00005043683	tmem160 (ENSOTSG00005043682)	NPAS1 (ENSOTSG00005043681)	ENSOTSG00005043680	ap2s1 (ENSOTSG00005043679)	rab4b (ENSOTSG00005043678)	rhoub (ENSOTSG00005043677)	rtn2a (ENSOTSG00005043676)	ppm1na (ENSOTSG00005043674)	ENSOTSG00005043673	PTGIR (ENSOTSG00005043672)	ENSOTSG00005043647	ENSOTSG00005043645 #26	ENSOTSG00005043643 #22	ARHGEF12 (ENSOTSG00005043640)	tlcd5a (ENSOTSG00005043639)	OAF (ENSOTSG00005043635)	ENSOTSG00005043450	hepacama (ENSOTSG00005043439)	NRGN (ENSOTSG00005043436)	scn3b (ENSOTSG00005043433)	drd2a (ENSOTSG00005043432)	ankk1 (ENSOTSG00005043431)	ttc12 (ENSOTSG00005043428)	ENSOTSG00005043427	zgc:162608 (ENSOTSG00005043426)	LAYN (ENSOTSG00005043425)	ENSOTSG00005043424	SIK2 (ENSOTSG00005043423)
Coho salmon	MODERN SPECIES	6	ANO7 (ENSOKIG00005010272)	ENSOKIG00005010220	ENSOKIG00005010202	ENSOKIG00005010197	ENSOKIG00005010184	rnpepl1 (ENSOKIG00005009446)	ENSOKIG00005009401	abcc5 (ENSOKIG00005009045)	rpl35a (ENSOKIG00005008973)	ENSOKIG00005008770	ABCF3 (ENSOKIG00005007771)	hmgb1b (ENSOKIG00005007709) #34	ENSOKIG00005007677	b3glcta (ENSOKIG00005007444) #28	FRY (ENSOKIG00005006767) #26	ENSOKIG00005006658 #22	trmt9b (ENSOKIG00005006654)	zgc:162872 (ENSOKIG00005006591)	ENSOKIG00005006556	ENSOKIG00005006532	sagb (ENSOKIG00005006442)	atg16l1 (ENSOKIG00005005976)	ENSOKIG00005005897	PARL (ENSOKIG00005005862)	ENSOKIG00005005845	fgf12b (ENSOKIG00005005784)	ENSOKIG00005005754	ostn (ENSOKIG00005005736)	sst1.1 (ENSOKIG00005005722)	ENSOKIG00005005713	ENSOKIG00005005632
Rainbow trout	MODERN SPECIES	19	ENSOMYG00000042345	rpl35a (ENSOMYG00000042152)	ENSOMYG00000067631	ENSOMYG00000042142	ENSOMYG00000071528	ENSOMYG00000041402	hmgb1b (ENSOMYG00000041318) #34	ENSOMYG00000063952	ENSOMYG00000055899	ENSOMYG00000041312	ENSOMYG00000064541	ENSOMYG00000048748	ENSOMYG00000073995	b3glcta (ENSOMYG00000041280) #28	ENSOMYG00000040578 #26	ENSOMYG00000040283 #22	ENSOMYG00000040270	zgc:162872 (ENSOMYG00000040234)	ENSOMYG00000040174	ENSOMYG00000050166	ENSOMYG00000040130	ENSOMYG00000055741	ENSOMYG00000073203	DGKD (ENSOMYG00000037639)	ENSOMYG00000050647	ENSOMYG00000037238	atg16l1 (ENSOMYG00000036964)	ENSOMYG00000071944	ENSOMYG00000064721	ENSOMYG00000036881	ENSOMYG00000036867
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES																	ENSGT00940000161440.e #22
Atlantic salmon	MODERN SPECIES	2	sparta (ENSSSAG00000007780) #11	ccdc169 (ENSSSAG00000117575)	dclk1a (ENSSSAG00000000887) #14	ENSSSAG00000107404	ENSSSAG00000007363	ENSSSAG00000113634	ENSSSAG00000007360 #9	ENSSSAG00000119249 ##15	ENSSSAG00000057857 ##19	ENSSSAG00000107247	ENSSSAG00000007377	ENSSSAG00000007410 #21	ENSSSAG00000103698	ENSSSAG00000070567 #26	ENSSSAG00000115884 #25	ENSSSAG00000116487 #22	ENSSSAG00000114438	ENSSSAG00000000875 ##27	ENSSSAG00000104028 #31	alox5ap (ENSSSAG00000006974) #32	ENSSSAG00000006978 #33	ENSSSAG00000006985 #34	KATNAL1 (ENSSSAG00000007005) #35	ENSSSAG00000091997	ENSSSAG00000006831	ENSSSAG00000116238	ENSSSAG00000006828	ENSSSAG00000006825	ENSSSAG00000099522	UBL3 (ENSSSAG00000007281) ##36	ENSSSAG00000105465
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	7	ENSGT00390000003912	ENSGT00730000111053.f	ENSGT00940000161729.m.b.c	ENSGT00940000165683.c	ENSGT00940000159223.c.h	ENSGT00950000182903.a.a.c.g	ENSGT00940000160400	ENSGT00940000155470.b.q.a	ENSGT00390000016972.h.b	ENSGT00940000158330.z	ENSGT00940000155604.o.a	ENSGT00950000183120.i.a.a #34	ENSGT00940000162967	ENSGT00940000155499.c.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000161440.f.a #22	ENSGT00940000165093.g	ENSGT00940000156389.b	ENSGT00720000108834.d	ENSGT00940000165072.g	ENSGT00940000159041.h	ENSGT00950000182887.C.b.a.m.b	ENSGT00940000153936.a.e	ENSGT00940000157650.vb	ENSGT00390000013063.u.e	ENSGT01050000244976.b.b.b.b.c	ENSGT00940000155929.a.a.d.b	ENSGT00940000153270.b.b.c	ENSGT00390000001750	ENSGT00510000047914.b.e	ENSGT00510000047914.a.a.d
River trout	MODERN SPECIES	18	tsen34 (ENSSTUG00000026791)	eif2a (ENSSTUG00000026755)	serp1 (ENSSTUG00000026750)	mmp23bb (ENSSTUG00000026725)	ap2m1b (ENSSTUG00000026661)	DVL3 (ENSSTUG00000026514)	rnpepl1 (ENSSTUG00000025421)	abcc5 (ENSSTUG00000023667)	rpl35a (ENSSTUG00000023585)	ENSSTUG00000023416	ABCF3 (ENSSTUG00000022997)	hmgb1b (ENSSTUG00000022953) #34	ENSSTUG00000022926	ENSSTUG00000022912	FRY (ENSSTUG00000022488) #26	ENSSTUG00000022458 #22	trmt9b (ENSSTUG00000022449)	zgc:162872 (ENSSTUG00000022429)	IWS1 (ENSSTUG00000022379)	ENSSTUG00000022359	DGKD (ENSSTUG00000020291)	sagb (ENSSTUG00000020190)	atg16l1 (ENSSTUG00000019822)	cldn15lb (ENSSTUG00000019781)	ENSSTUG00000019753	ENSSTUG00000019741	fgf12b (ENSSTUG00000019678)	GMNC (ENSSTUG00000019626)	ostn (ENSSTUG00000019609)	sst1.1 (ENSSTUG00000019601)	ENSSTUG00000019595
Atlantic salmon	MODERN SPECIES	12	mmp23bb (ENSSSAG00000072280)	ap2m1b (ENSSSAG00000003077)	ENSSSAG00000072031	rnpepl1 (ENSSSAG00000071951)	abcc5 (ENSSSAG00000071602)	rpl35a (ENSSSAG00000071589)	ENSSSAG00000101775	ENSSSAG00000071209	ENSSSAG00000071180	ENSSSAG00000070340	ENSSSAG00000086454	hmgb1b (ENSSSAG00000070305) #34	ENSSSAG00000070292	b3glcta (ENSSSAG00000070277) #28	ENSSSAG00000053730 #26	ENSSSAG00000053418 #22	ENSSSAG00000107131 #21	ENSSSAG00000120458	ENSSSAG00000117418	zgc:162872 (ENSSSAG00000053324)	ENSSSAG00000053276	fa9 (ENSSSAG00000053261)	ENSSSAG00000053229	noxa1 (ENSSSAG00000022993)	ENSSSAG00000053207	stxbp1b (ENSSSAG00000026287)	niban2b (ENSSSAG00000046956)	ENSSSAG00000046905	ENSSSAG00000116563	ENSSSAG00000107349	ENSSSAG00000045572
Salmo	ANCESTRAL SPECIES	22						ENSGT00940000155374.g.b.g	ENSGT00950000182915.a.b	ENSGT00510000047733.w	ENSGT01100000263536.B.c.b.g	ENSGT01040000240444.A.a.a.a.b.f	ENSGT00940000161206	ENSGT00940000156017.eb.b	ENSGT00390000008591.d	ENSGT01060000248855	ENSGT00390000003602 #24	ENSGT00940000161440.f.b #22	ENSGT00940000165093.h	ENSGT00720000108834.c.b	ENSGT00720000108834.c.a	ENSGT00940000159041.g	ENSGT00940000153936.a.f	ENSGT00940000157650.wb	ENSGT00390000013063.u.f	ENSGT01050000244976.b.b.b.b.d	ENSGT00940000155929.a.a.d.a	ENSGT01090000260076.a.ab	ENSGT00950000183084.b.b	ENSGT00510000047914.b.f	ENSGT00510000047914.a.a.c	ENSGT00940000166749	ENSGT00940000161579
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000097782	ENSSSAG00000043955	SH3BGRL (ENSSSAG00000116254)	ENSSSAG00000038996	ENSSSAG00000089563	ENSSSAG00000021509	ENSSSAG00000113182	ENSSSAG00000098602	ENSSSAG00000098968	ENSSSAG00000094961	ENSSSAG00000105540	ENSSSAG00000082996	ENSSSAG00000109101	ENSSSAG00000063314	ENSSSAG00000049500 #24	ENSSSAG00000103625 #22	ENSSSAG00000049465	ENSSSAG00000049347	ENSSSAG00000043804	ENSSSAG00000104634	atg16l1 (ENSSSAG00000094653)	ENSSSAG00000043061	cldn15lb (ENSSSAG00000043076)	ENSSSAG00000121877	ENSSSAG00000090458	fgf12 (ENSSSAG00000043432)	ENSSSAG00000085533	ENSSSAG00000043510	masp1 (ENSSSAG00000043562)	sms1a (ENSSSAG00000043702)	ENSSSAG00000098973
Acanthomorphata	ANCESTRAL SPECIES	8	ENSGT00940000163767.a.a	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000161369.B.b.a.a.d	ENSGT00970000197371	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Cod	MODERN SPECIES	7	ENSGMOG00000032588	ENSGMOG00000029331	ppp1r13l (ENSGMOG00000024946)	ENSGMOG00000034209	ENSGMOG00000027778	ENSGMOG00000035950	opa3 (ENSGMOG00000019407)	ENSGMOG00000019404	rasgrp4 (ENSGMOG00000019397)	ENSGMOG00000019367	ENSGMOG00000002731	ENSGMOG00000002760	ENSGMOG00000026810	ENSGMOG00000035107	ENSGMOG00000009699 #24	ENSGMOG00000009727 #22	trmt9b (ENSGMOG00000024098)	ENSGMOG00000004486	ENSGMOG00000014281 ##19	NBEA (ENSGMOG00000026728) #15	mab21l1 (ENSGMOG00000029011) #16	dclk1b (ENSGMOG00000001463) #14	spartb (ENSGMOG00000001489) #11	postnb (ENSGMOG00000001525)	trpc4b (ENSGMOG00000001551)	frem2b (ENSGMOG00000001576)	ENSGMOG00000001631	ENSGMOG00000001656	arfip2a (ENSGMOG00000001005)	ENSGMOG00000024077	ENSGMOG00000001838
Euacanthomorphacea	ANCESTRAL SPECIES	8	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00970000197371	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Pinecone sodierfish	MODERN SPECIES	4	ENSMMDG00005006794	or71aq1 (ENSMMDG00005006796)	ENSMMDG00005006797	ENSMMDG00005006798	ENSMMDG00005006800	ENSMMDG00005006801	ENSMMDG00005006805	ENSMMDG00005006809	ENSMMDG00005006812	hmgb1b (ENSMMDG00005006817) #34	ENSMMDG00005006819 #30	ENSMMDG00005006823	b3glcta (ENSMMDG00005006846) #28	FRY (ENSMMDG00005008480) #26	brca2 (ENSMMDG00005008528) #24	ENSMMDG00005008534 #22	trmt9b (ENSMMDG00005008536)	ENSMMDG00005008537	ENSMMDG00005008551 ##19	NBEA (ENSMMDG00005008726) #15	mab21l1 (ENSMMDG00005008759) #16	dclk1b (ENSMMDG00005008762) #14	spartb (ENSMMDG00005008770) #11	postnb (ENSMMDG00005008774)	trpc4b (ENSMMDG00005008776)	frem2b (ENSMMDG00005008778)	TRIM3 (ENSMMDG00005008789)	ENSMMDG00005008792	arfip2a (ENSMMDG00005008801)	ENSMMDG00005008839	urb1 (ENSMMDG00005008880)
Percomorphaceae	ANCESTRAL SPECIES	8	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000161369.B.b.a.a.d	ENSGT00970000197371	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Tiger tail seahorse	MODERN SPECIES	494						PGAP2 (ENSHCOG00000010981)	ENSHCOG00000010999	or71aq1 (ENSHCOG00000011010)	or15.37 (ENSHCOG00000011018)	or30bw1 (ENSHCOG00000011025)	hmgb1b (ENSHCOG00000011037) #34	b3glcta (ENSHCOG00000011069) #28	ENSHCOG00000011090 #26	FRY (ENSHCOG00000011167) #26	ENSHCOG00000011192	ENSHCOG00000011201 #22	trmt9b (ENSHCOG00000011220)	ENSHCOG00000011238 ##19	ENSHCOG00000011250
Percomorphaceae_B	ANCESTRAL SPECIES	13	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000161369.B.b.a.a.d	ENSGT00970000197371	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Ovalentaria	ANCESTRAL SPECIES	8	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00970000197371	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Ovalentaria_B	ANCESTRAL SPECIES	11	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00970000197371	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Cichlidae	ANCESTRAL SPECIES	21	ENSGT00940000161369.A.g.a.a	ENSGT00940000161369.A.h.b	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00970000197371	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	19	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000163767.a.b.s.a	ENSGT00940000161369.A.h.b.b.a	ENSGT00940000161369.B.b.a.a.c.f	ENSGT00940000161369.B.b.a.b.n	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c.e.a	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	15	ENSGT00940000161369.A.g.b	ENSGT00940000161369.A.h.b.b.a	ENSGT00940000161369.B.b.a.a.c.f	ENSGT00940000161369.A.h.a.b.a.a.a	ENSGT00940000161369.B.b.a.b.m.c	ENSGT00940000161369.B.b.a.b.n.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c.e.a	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Haplochromini	ANCESTRAL SPECIES	15	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000163767.a.b.s.b	ENSGT00940000161369.A.g.b	ENSGT00940000165062	ENSGT00940000161369.A.h.b.b.a	ENSGT00940000161369.B.b.a.a.d.o	ENSGT00940000161369.B.b.a.a.c.e.b	ENSGT00940000161369.B.b.a.a.c.e.a	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Haplochromini_A	ANCESTRAL SPECIES	23	ENSGT00940000161369.B.b.a.b.n.a	ENSGT00940000161369.B.b.a.b.m.c	ENSGT00940000161369.B.b.a.b.n.b	ENSGT00940000161369.B.b.a.a.d.p	ENSGT00940000161369.B.b.a.a.d.o	ENSGT00940000161369.B.b.a.a.c.e.b	ENSGT00940000161369.B.b.a.a.c.e.a	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000154466.mc	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Haplochromini_B	ANCESTRAL SPECIES	27	ENSGT00940000161369.B.b.a.b.n.a	ENSGT00940000161369.B.b.a.b.m.c	ENSGT00940000161369.B.b.a.b.n.b	ENSGT00940000161369.B.b.a.a.d.p	ENSGT00940000161369.B.b.a.a.d.o	ENSGT00940000161369.B.b.a.a.c.e.b	ENSGT00940000161369.B.b.a.a.c.e.a	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000154466.mc	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Zebra mbuna	MODERN SPECIES	1096	ENSMZEG00005010283	ENSMZEG00005010430	ENSMZEG00005010444	ENSMZEG00005010554	ENSMZEG00005010561	ENSMZEG00005010593	ENSMZEG00005011064	ENSMZEG00005011068	hmgb1b (ENSMZEG00005011078) #34	ENSMZEG00005011088	ENSMZEG00005011099	ENSMZEG00005011116	b3glcta (ENSMZEG00005011147) #28	FRY (ENSMZEG00005011184) #26	brca2 (ENSMZEG00005011354) #24	ENSMZEG00005011380 #22	trmt9b (ENSMZEG00005011387)	ENSMZEG00005011396	ENSMZEG00005011419 ##19	NBEA (ENSMZEG00005011503) #15	mab21l1 (ENSMZEG00005011578) #16	dclk1b (ENSMZEG00005011599) #14	spartb (ENSMZEG00005011653) #11	postnb (ENSMZEG00005011673)	trpc4b (ENSMZEG00005011701)	frem2b (ENSMZEG00005011719)	TRIM3 (ENSMZEG00005011760)	ENSMZEG00005011801	arfip2a (ENSMZEG00005011811)	ENSMZEG00005011829	urb1 (ENSMZEG00005011862)
Eastern happy	MODERN SPECIES	5	ENSACLG00000000731	ENSACLG00000000725	ENSACLG00000000699	ENSACLG00000000680	ENSACLG00000000653	ENSACLG00000000641	ENSACLG00000000638	hmgb1b (ENSACLG00000000621) #34	HMGB2 (ENSACLG00000000610)	ENSACLG00000000507	b3glcta (ENSACLG00000000453) #28	ENSACLG00000000435 #26	ENSACLG00000000376 #26	ENSACLG00000000347 #26	ENSACLG00000000340	ENSACLG00000000330 #22	trmt9b (ENSACLG00000000314)	ENSACLG00000000297	ENSACLG00000000249 ##19	ENSACLG00000000239	mab21l1 (ENSACLG00000000212) #16	NBEA (ENSACLG00000000081) #15	dclk1b (ENSACLG00000000049) #14	spartb (ENSACLG00000025358) #11	postnb (ENSACLG00000025319)	trpc4b (ENSACLG00000025270)	frem2b (ENSACLG00000025170)	TRIM3 (ENSACLG00000025109)	ENSACLG00000025085	arfip2a (ENSACLG00000025021)	ENSACLG00000024994
P. nyererei	MODERN SPECIES	361			ENSPNYG00000012098	ENSPNYG00000012074	or30bw1 (ENSPNYG00000012028)	ENSPNYG00000012015	ENSPNYG00000011998	hmgb1b (ENSPNYG00000011980) #34	ENSPNYG00000011966	ENSPNYG00000011928	b3glcta (ENSPNYG00000011883) #28	ENSPNYG00000011853 #26	ENSPNYG00000011818 #26	ENSPNYG00000011785 #26	ENSPNYG00000011768	ENSPNYG00000011747 #22	trmt9b (ENSPNYG00000011729)	ENSPNYG00000011710	ENSPNYG00000011644 ##19	mab21l1 (ENSPNYG00000011604) #16	NBEA (ENSPNYG00000011499) #15	dclk1b (ENSPNYG00000011397) #14	spartb (ENSPNYG00000011373) #11	postnb (ENSPNYG00000011306)	trpc4b (ENSPNYG00000011265)	frem2b (ENSPNYG00000011206)	TRIM3 (ENSPNYG00000011142)	ENSPNYG00000011101	arfip2a (ENSPNYG00000010966)	ENSPNYG00000010845	urb1 (ENSPNYG00000010589)
Nile tilapia	MODERN SPECIES	5	ENSONIG00000032062	ENSONIG00000034149	ENSONIG00000031751	ENSONIG00000027313	ENSONIG00000029979	ENSONIG00000028516	ENSONIG00000032952	ENSONIG00000027853	ENSONIG00000038826	ENSONIG00000042957	hmgb1b (ENSONIG00000005505) #34	ENSONIG00000005507 #30	ENSONIG00000005509	b3glcta (ENSONIG00000005511) #28	FRY (ENSONIG00000005514) #26	ENSONIG00000005525 #22	trmt9b (ENSONIG00000005528)	ENSONIG00000029720	ENSONIG00000005529 ##19	NBEA (ENSONIG00000005533) #15	mab21l1 (ENSONIG00000029284) #16	dclk1b (ENSONIG00000005549) #14	spartb (ENSONIG00000005557) #11	postnb (ENSONIG00000005562)	trpc4b (ENSONIG00000005568)	frem2b (ENSONIG00000005574)	TRIM3 (ENSONIG00000005588)	ENSONIG00000038251	arfip2a (ENSONIG00000005591)	ENSONIG00000005595	urb1 (ENSONIG00000005599)
Midas cichlid	MODERN SPECIES	363							ENSACIG00000004658	ENSACIG00000004642	hmgb1b (ENSACIG00000004633) #34	ENSACIG00000004610	ENSACIG00000004581	b3glcta (ENSACIG00000004512) #28	FRY (ENSACIG00000004385) #26	ENSACIG00000004350	ENSACIG00000004324 #24	ENSACIG00000004310 #22	trmt9b (ENSACIG00000004292)	ENSACIG00000004276	ENSACIG00000004247 ##19	ENSACIG00000004239 ##15	mab21l1 (ENSACIG00000004223) #16	ENSACIG00000004188	NBEA (ENSACIG00000004075) #15	dclk1b (ENSACIG00000004018) #14	spartb (ENSACIG00000003927) #11	postnb (ENSACIG00000003581)	trpc4b (ENSACIG00000003554)	frem2b (ENSACIG00000003505)	TRIM3 (ENSACIG00000003469)	ENSACIG00000003437	arfip2a (ENSACIG00000003421)
Pomacentridae	ANCESTRAL SPECIES	27	ENSGT00940000163767.a.a	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000177583	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Pomacentridae_A	ANCESTRAL SPECIES	32	ENSGT00940000163767.a.a	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000177583	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Amphiprion	ANCESTRAL SPECIES	30	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000177583	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Orange clownfish	MODERN SPECIES	23	or71aq1 (ENSAPEG00000009112)	or71as2 (ENSAPEG00000009135)	or15.37 (ENSAPEG00000009173)	or80a5 (ENSAPEG00000009184)	ENSAPEG00000009218	or30bt5 (ENSAPEG00000009222)	ENSAPEG00000009248	ENSAPEG00000009290	ENSAPEG00000009351	hmgb1b (ENSAPEG00000009394) #34	ENSAPEG00000009424 #30	ENSAPEG00000009457	b3glcta (ENSAPEG00000009511) #28	FRY (ENSAPEG00000009567) #26	ENSAPEG00000009811	ENSAPEG00000009848 #22	trmt9b (ENSAPEG00000009854)	ENSAPEG00000009872	ENSAPEG00000009911 ##19	NBEA (ENSAPEG00000009981) #15	mab21l1 (ENSAPEG00000010165) #16	dclk1b (ENSAPEG00000010187) #14	spartb (ENSAPEG00000010241) #11	ENSAPEG00000010282	postnb (ENSAPEG00000010302)	trpc4b (ENSAPEG00000010335)	frem2b (ENSAPEG00000010385)	TRIM3 (ENSAPEG00000010480)	ENSAPEG00000010545	arfip2a (ENSAPEG00000010565)	ENSAPEG00000010601
Spiny chromis	MODERN SPECIES	393						or80a5 (ENSAPOG00000004586)	or30bt5 (ENSAPOG00000004610)	or30bw1 (ENSAPOG00000004636)	ENSAPOG00000004663	hmgb1b (ENSAPOG00000000120) #34	ENSAPOG00000004698 #30	ENSAPOG00000004740	b3glcta (ENSAPOG00000004769) #28	FRY (ENSAPOG00000004901) #26	brca2 (ENSAPOG00000005021) #24	ENSAPOG00000005054 #22	SIK2 (ENSAPOG00000005131)	ENSAPOG00000005150	ENSAPOG00000005198	zgc:162608 (ENSAPOG00000005223)	ENSAPOG00000005238	ttc12 (ENSAPOG00000005263)	ankk1 (ENSAPOG00000005319)	drd2a (ENSAPOG00000005343)
Bicolor damselfish	MODERN SPECIES	314	CHRNA10 (ENSSPAG00000013910)	ENSSPAG00000013876	or71as2 (ENSSPAG00000013843)	or15.37 (ENSSPAG00000013806)	or30bt5 (ENSSPAG00000013779)	ENSSPAG00000013768	ENSSPAG00000013744	ENSSPAG00000013732	ENSSPAG00000013715	hmgb1b (ENSSPAG00000013696) #34	ENSSPAG00000013685 #30	ENSSPAG00000013655	b3glcta (ENSSPAG00000013629) #28	FRY (ENSSPAG00000013534) #26	ENSSPAG00000013500	ENSSPAG00000013484 #22	trmt9b (ENSSPAG00000013471)	ENSSPAG00000013423	ENSSPAG00000013254 ##19	mab21l1 (ENSSPAG00000013213) #16	NBEA (ENSSPAG00000013086) #15
Atherinomorphae	ANCESTRAL SPECIES	15	ENSGT00940000160721	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Cyprinodontiformes	ANCESTRAL SPECIES	12	ENSGT00940000160721	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Aplocheiloidei	ANCESTRAL SPECIES	8	ENSGT00940000156077.h	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000163767.a.b	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00970000197371	ENSGT00940000155719.a.d	ENSGT00940000163878	ENSGT00950000183120.i.a #34	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000177583	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B.hb #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Mangrove rivulus	MODERN SPECIES	36	or71aq1 (ENSKMAG00000008464)	ENSKMAG00000008448	ENSKMAG00000008436	ENSKMAG00000008421	ENSKMAG00000008397	ENSKMAG00000008352	or30bw1 (ENSKMAG00000008312)	ENSKMAG00000008280	ENSKMAG00000008258	ENSKMAG00000008243	hmgb1b (ENSKMAG00000008212) #34	ENSKMAG00000008158	b3glcta (ENSKMAG00000008045) #28	FRY (ENSKMAG00000007865) #26	brca2 (ENSKMAG00000007719) #24	ENSKMAG00000007664 #22	trmt9b (ENSKMAG00000007640)	ENSKMAG00000007619	ENSKMAG00000007482 ##19	mab21l1 (ENSKMAG00000007449) #16	NBEA (ENSKMAG00000007342) #15	dclk1b (ENSKMAG00000007285) #14	spartb (ENSKMAG00000007246) #11	postnb (ENSKMAG00000007185)	trpc4b (ENSKMAG00000007110)	frem2b (ENSKMAG00000007018)	TRIM3 (ENSKMAG00000006943)	ENSKMAG00000006920	arfip2a (ENSKMAG00000006874)	ENSKMAG00000006828	urb1 (ENSKMAG00000006001)
Turquoise killifish	MODERN SPECIES	1615	NEU4 (ENSNFUG00015020252)	tp53rk (ENSNFUG00015020249)	WDR53 (ENSNFUG00015020248)	srprb (ENSNFUG00015020242)	ENSNFUG00015020228	FUT4 (ENSNFUG00015020225)	cux1b (ENSNFUG00015020220)	SH2B2 (ENSNFUG00015020216)	dnajc30b (ENSNFUG00015020213)	WBSCR22 (ENSNFUG00015020192)	STX1A (ENSNFUG00015020019)	ENSNFUG00015019999	ENSNFUG00015019994	ENSNFUG00015019992	ENSNFUG00015019989	ENSNFUG00015019975 #22	KIAA1456 (ENSNFUG00015019966)	STARD13B (ENSNFUG00015019634) ##19	NBEA (ENSNFUG00015018746) #15	ENSNFUG00015018688	MAB21L1 (ENSNFUG00015018685) #16	NBEA (ENSNFUG00015018636) #15	dclk1b (ENSNFUG00015018436) #14	SPG20B (ENSNFUG00015018416) #11	postnb (ENSNFUG00015015438)	trpc4b (ENSNFUG00015015192)	frem2b (ENSNFUG00015014651)	TRIM3A (ENSNFUG00015013604)	ENSNFUG00015013552	arfip2a (ENSNFUG00015013506)	ENSNFUG00015013484
Cyprinodontoidei	ANCESTRAL SPECIES	9	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d.y.a	ENSGT00940000161369.B.b.a.a.d.z	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
NAME_4	ANCESTRAL SPECIES	54					ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d.y.a	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Mummichog	MODERN SPECIES	490								ENSFHEG00000011947	ENSFHEG00000011939	hmgb1b (ENSFHEG00000011928) #34	ENSFHEG00000011905	ENSFHEG00000011897	b3glcta (ENSFHEG00000011829) #28	FRY (ENSFHEG00000011773) #26	brca2 (ENSFHEG00000011541) #24	ENSFHEG00000011527 #22	trmt9b (ENSFHEG00000011480)	ENSFHEG00000011463
Sheepshead minnow	MODERN SPECIES	479			ENSCVAG00000012781	ENSCVAG00000012774	or15.37 (ENSCVAG00000012750)	or30bt5 (ENSCVAG00000012730)	ENSCVAG00000012702	ENSCVAG00000000957	ENSCVAG00000012619	ENSCVAG00000012580	hmgb1b (ENSCVAG00000012549) #34	ENSCVAG00000012531	b3glcta (ENSCVAG00000012505) #28	FRY (ENSCVAG00000012466) #26	ENSCVAG00000012320 #24	ENSCVAG00000012208 #22	trmt9b (ENSCVAG00000012174)	ENSCVAG00000012157	ENSCVAG00000012113 ##19	NBEA (ENSCVAG00000012009) #15	mab21l1 (ENSCVAG00000011869) #16	dclk1b (ENSCVAG00000011853) #14	spartb (ENSCVAG00000011798) #11	postnb (ENSCVAG00000011729)
Poeciliinae	ANCESTRAL SPECIES	14	ENSGT00510000047299.d	ENSGT00940000160721	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000165062	ENSGT00940000163767.a.b.q	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d.z	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d.x	ENSGT00950000183120.i.a #34	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Poecilia	ANCESTRAL SPECIES	2	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000165062	ENSGT00940000163767.a.b.q	ENSGT00940000163767.a.b.r	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d.z	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d.x	ENSGT00940000155719.a.d.w	ENSGT00950000183120.i.a #34	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
NAME_6	ANCESTRAL SPECIES	60	ENSGT00940000163767.a.a	ENSGT00940000165062	ENSGT00940000163767.a.b.q	ENSGT00940000163767.a.b.r	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d.z.a	ENSGT00940000161369.B.b.a.a.d.z.b	ENSGT00940000161369.B.b.a.a.d.y.a	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d.w	ENSGT00950000183120.i.a #34	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Amazon molly	MODERN SPECIES	325	ENSPFOG00000004739	PGAP2 (ENSPFOG00000004705)	CHRNA10 (ENSPFOG00000004647)	or71aq1 (ENSPFOG00000020307)	or71as2 (ENSPFOG00000004620)	ENSPFOG00000020306	ENSPFOG00000020305	ENSPFOG00000020304	ENSPFOG00000020303	ENSPFOG00000004538	hmgb1b (ENSPFOG00000004533) #34	ENSPFOG00000004331	b3glcta (ENSPFOG00000004130) #28	FRY (ENSPFOG00000002134) #26	brca2 (ENSPFOG00000001640) #24	ENSPFOG00000001585 #22	trmt9b (ENSPFOG00000001551)	ENSPFOG00000001526
Sailfin molly	MODERN SPECIES	382													b3glcta (ENSPLAG00000014724) #28	FRY (ENSPLAG00000000345) #26	brca2 (ENSPLAG00000014899) #24	ENSPLAG00000014954 #22	trmt9b (ENSPLAG00000014962)	ENSPLAG00000014968	ENSPLAG00000015014 ##19
Guppy	MODERN SPECIES	443	ENSPREG00000011704	or71aq1 (ENSPREG00000011805)	or71as1 (ENSPREG00000011839)	ENSPREG00000011844	ENSPREG00000011858	ENSPREG00000011873	ENSPREG00000011899	ENSPREG00000011919	ENSPREG00000011962	ENSPREG00000011987	hmgb1b (ENSPREG00000012015) #34	ENSPREG00000012050	b3glcta (ENSPREG00000012082) #28	FRY (ENSPREG00000012145) #26	brca2 (ENSPREG00000012389) #24	ENSPREG00000012450 #22	trmt9b (ENSPREG00000012608)	ENSPREG00000012631	ENSPREG00000012665 ##19	NBEA (ENSPREG00000012761) #15	ENSPREG00000012852	ENSPREG00000012875	dclk1b (ENSPREG00000012906) #14	spartb (ENSPREG00000012994) #11	postnb (ENSPREG00000013026)	trpc4b (ENSPREG00000013138)	frem2b (ENSPREG00000013218)	TRIM3 (ENSPREG00000013336)	ENSPREG00000013387	arfip2a (ENSPREG00000013407)	ENSPREG00000013431
Oryzias	ANCESTRAL SPECIES	8	ENSGT00510000047299.d	ENSGT00940000167172.b	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000165062.s	ENSGT00940000163767.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000163878	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Oryzias_b	ANCESTRAL SPECIES	14	ENSGT00940000165744	ENSGT00390000000214.a.a.e	ENSGT00510000047299.d	ENSGT00940000167172.b	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000165062.t.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000177583	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Javanese ricefish	MODERN SPECIES	4	stim1a (ENSOJAG00000008571)	PGAP2 (ENSOJAG00000010157)	ENSOJAG00000010169	or71aq1 (ENSOJAG00000010244)	ENSOJAG00000010279	ENSOJAG00000010300	ENSOJAG00000010322	ENSOJAG00000010330	or15.37 (ENSOJAG00000010340)	or30bw1 (ENSOJAG00000010355)	ENSOJAG00000010380	hmgb1b (ENSOJAG00000010427) #34	ENSOJAG00000010474	b3glcta (ENSOJAG00000010649) #28	ENSOJAG00000013671	ENSOJAG00000013689 #22	trmt9b (ENSOJAG00000013768)	ENSOJAG00000013775	ENSOJAG00000013856 ##19	NBEA (ENSOJAG00000015318) #15	mab21l1 (ENSOJAG00000018089) #16	dclk1b (ENSOJAG00000018110) #14	spartb (ENSOJAG00000018233) #11	postnb (ENSOJAG00000018278)	trpc4b (ENSOJAG00000018535)	frem2b (ENSOJAG00000018561)	TRIM3 (ENSOJAG00000018704)	ENSOJAG00000019063	arfip2a (ENSOJAG00000019077)	ENSOJAG00000019172	ENSOJAG00000019578
Oryzias_a	ANCESTRAL SPECIES	8	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000165062.s	ENSGT00940000163767.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000175389	ENSGT00390000010968.a	ENSGT00940000163878	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Japanese Medaka HdrR	MODERN SPECIES	4	ENSORLG00000004000	ENSORLG00000024364	or71aq1 (ENSORLG00000003986)	or71ar1 (ENSORLG00000027317)	or15.37 (ENSORLG00000003979)	ENSORLG00000003966	ENSORLG00000022606	ENSORLG00000003962	ENSORLG00000003957	ENSORLG00000023096	hmgb1b (ENSORLG00000003951) #34	ENSORLG00000003946	b3glcta (ENSORLG00000003936) #28	FRY (ENSORLG00000003920) #26	brca2 (ENSORLG00000030193) #24	ENSORLG00000022813 #22	trmt9b (ENSORLG00000003826)	ENSORLG00000003813	ENSORLG00000003808 ##19	ENSORLG00000026292	mab21l1 (ENSORLG00000003801) #16	NBEA (ENSORLG00000003788) #15	dclk1b (ENSORLG00000003672) #14	spartb (ENSORLG00000003609) #11	ENSORLG00000029361	postnb (ENSORLG00000003583)	trpc4b (ENSORLG00000003541)	frem2b (ENSORLG00000003520)	TRIM3 (ENSORLG00000003504)	ENSORLG00000029122	arfip2a (ENSORLG00000003468)
Percomorphaceae_C	ANCESTRAL SPECIES	9	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Eupercaria	ANCESTRAL SPECIES	7	ENSGT00940000165062.x	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Eupecaria_A	ANCESTRAL SPECIES	9	ENSGT00940000165062.x	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Ballan wrasse	MODERN SPECIES	73	or71aq1 (ENSLBEG00000001377)	or71as2 (ENSLBEG00000001421)	ENSLBEG00000001432	ENSLBEG00000001469	ENSLBEG00000001521	ENSLBEG00000001580	ENSLBEG00000001640	ENSLBEG00000001721	hmgb1b (ENSLBEG00000001755) #34	ENSLBEG00000001792	ENSLBEG00000001809	b3glcta (ENSLBEG00000001873) #28	FRY (ENSLBEG00000001955) #26	ENSLBEG00000002166	ENSLBEG00000002188 #24	ENSLBEG00000002241 #22	trmt9b (ENSLBEG00000002263)	ENSLBEG00000002274	ENSLBEG00000002347 ##19	NBEA (ENSLBEG00000002491) #15	mab21l1 (ENSLBEG00000002652) #16	dclk1b (ENSLBEG00000002704) #14	spartb (ENSLBEG00000002839) #11	postnb (ENSLBEG00000002965)	trpc4b (ENSLBEG00000003027)	frem2b (ENSLBEG00000003077)	TRIM3 (ENSLBEG00000003178)	ENSLBEG00000003298	arfip2a (ENSLBEG00000003341)
Eupecaria_B	ANCESTRAL SPECIES	9	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000165062.x	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Perciformes	ANCESTRAL SPECIES	10	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000165062.x	ENSGT00940000163767.a.b	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00390000009484 #30	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Cottioidei	ANCESTRAL SPECIES	4	ENSGT00510000047299.d	ENSGT00940000160721	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000165062.x	ENSGT00940000163767.a.b	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Lumpfish	MODERN SPECIES	4	stim1a (ENSCLMG00005006058)	PGAP2 (ENSCLMG00005008668)	CHRNA10 (ENSCLMG00005008670)	ENSCLMG00005008672	or71aq1 (ENSCLMG00005008674)	or71as2 (ENSCLMG00005008676)	or15.37 (ENSCLMG00005008677)	ENSCLMG00005008678	ENSCLMG00005008680	ENSCLMG00005008681	hmgb1b (ENSCLMG00005008682) #34	ENSCLMG00005008683	ENSCLMG00005008684	b3glcta (ENSCLMG00005008685) #28	FRY (ENSCLMG00005008762) #26	ENSCLMG00005014291 #22	trmt9b (ENSCLMG00005014292)	ENSCLMG00005014293	ENSCLMG00005014297 ##19	NBEA (ENSCLMG00005014738) #15	mab21l1 (ENSCLMG00005014747) #16	dclk1b (ENSCLMG00005014748) #14	spartb (ENSCLMG00005014756) #11	postnb (ENSCLMG00005014767)	trpc4b (ENSCLMG00005014803)	frem2b (ENSCLMG00005014804)	TRIM3 (ENSCLMG00005014820)	ENSCLMG00005015087	ENSCLMG00005015090	arfip2a (ENSCLMG00005015092)	ENSCLMG00005015097
Stickleback	MODERN SPECIES		ENSGACG00000011423	or71aq1 (ENSGACG00000011431)	or71ar1 (ENSGACG00000011432)	ENSGACG00000011434	ENSGACG00000011435	ENSGACG00000011438	ENSGACG00000011439	ENSGACG00000011441	or30bw1 (ENSGACG00000011443)	hmgb1b (ENSGACG00000011447) #34	ENSGACG00000011454	b3glcta (ENSGACG00000011460) #28	FRY (ENSGACG00000011469) #26	ENSGACG00000011490 #24	ENSGACG00000011496	ENSGACG00000011499 #22	trmt9b (ENSGACG00000011506)	ENSGACG00000011521	ENSGACG00000011549 ##19	NBEA (ENSGACG00000011555) #15	dclk1b (ENSGACG00000011579) #14	spartb (ENSGACG00000011596) #11	postnb (ENSGACG00000011606)	trpc4b (ENSGACG00000011660)	frem2b (ENSGACG00000011668)	TRIM3 (ENSGACG00000011679)	arfip2a (ENSGACG00000011689)	ENSGACG00000011697	urb1 (ENSGACG00000011703)	ENSGACG00000011717	TIAM1 (ENSGACG00000011727)
Perciformes_a	ANCESTRAL SPECIES	9	ENSGT00510000047299.d	ENSGT00940000167172.b	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000165062.x	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Channel bull blenny	MODERN SPECIES	4	robo2 (ENSCGOG00000005455)	ENSCGOG00000009146	stim1a (ENSCGOG00000009153)	PGAP2 (ENSCGOG00000009574)	ENSCGOG00000009580	ENSCGOG00000009594	or71aq1 (ENSCGOG00000009596)	ENSCGOG00000009600	or30bt5 (ENSCGOG00000009606)	ENSCGOG00000009614	hmgb1b (ENSCGOG00000009631) #34	ENSCGOG00000009635 #30	b3glcta (ENSCGOG00000009641) #28	FRY (ENSCGOG00000010024) #26	brca2 (ENSCGOG00000017134) #24	ENSCGOG00000017166 #22	trmt9b (ENSCGOG00000017168)	ENSCGOG00000017170	ENSCGOG00000017182 ##19	NBEA (ENSCGOG00000017297) #15	mab21l1 (ENSCGOG00000017510) #16	dclk1b (ENSCGOG00000017542) #14	spartb (ENSCGOG00000018467) #11	postnb (ENSCGOG00000018522)	trpc4b (ENSCGOG00000019689)	frem2b (ENSCGOG00000019699)	TRIM3 (ENSCGOG00000019811)	ENSCGOG00000020301	arfip2a (ENSCGOG00000020311)	ENSCGOG00000020344	urb1 (ENSCGOG00000020364)
Pike perch	MODERN SPECIES	14	or71ar1 (ENSSLUG00000010989)	or80a5 (ENSSLUG00000010990)	or30bt5 (ENSSLUG00000010994)	ENSSLUG00000011000	ENSSLUG00000011006	ENSSLUG00000011014	ENSSLUG00000011044	ENSSLUG00000011053	ENSSLUG00000011055	ENSSLUG00000011059	hmgb1b (ENSSLUG00000011061) #34	ENSSLUG00000011069	b3glcta (ENSSLUG00000011104) #28	FRY (ENSSLUG00000012418) #26	brca2 (ENSSLUG00000013644) #24	ENSSLUG00000013709 #22	trmt9b (ENSSLUG00000013723)	ENSSLUG00000013730	ENSSLUG00000013831 ##19	NBEA (ENSSLUG00000016304) #15	mab21l1 (ENSSLUG00000016916) #16	dclk1b (ENSSLUG00000017031) #14	spartb (ENSSLUG00000019019) #11	ENSSLUG00000019026	postnb (ENSSLUG00000019037)	trpc4b (ENSSLUG00000019091)	frem2b (ENSSLUG00000019097)	TRIM3 (ENSSLUG00000019114)	arfip2a (ENSSLUG00000019499)	ENSSLUG00000019508	urb1 (ENSSLUG00000019540)
Eupecaria_C	ANCESTRAL SPECIES	7	ENSGT00940000163767.a.a	ENSGT00940000165062.x	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00390000009484 #30	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Gilthead seabream	MODERN SPECIES	11	ENSSAUG00010023381	ENSSAUG00010023379	ENSSAUG00010023378	ENSSAUG00010023377	or30bt5 (ENSSAUG00010023376)	or30bw1 (ENSSAUG00010023374)	ENSSAUG00010023372	ENSSAUG00010023371	ENSSAUG00010023367	hmgb1b (ENSSAUG00010023364) #34	ENSSAUG00010023363 #30	ENSSAUG00010023362	b3glcta (ENSSAUG00010023356) #28	FRY (ENSSAUG00010013531) #26	brca2 (ENSSAUG00010013381) #24	ENSSAUG00010013373 #22	trmt9b (ENSSAUG00010013369)	ENSSAUG00010013367	ENSSAUG00010011746 ##19	mab21l1 (ENSSAUG00010011730) #16	NBEA (ENSSAUG00010010418) #15	dclk1b (ENSSAUG00010010172) #14	spartb (ENSSAUG00010010166) #11	postnb (ENSSAUG00010010161)	trpc4b (ENSSAUG00010010145)	frem2b (ENSSAUG00010010121)	TRIM3 (ENSSAUG00010009641)	ENSSAUG00010009619	arfip2a (ENSSAUG00010009576)	ENSSAUG00010009519	urb1 (ENSSAUG00010009512)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	5	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000165062.x	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
European seabass	MODERN SPECIES	3	ENSDLAG00005005821	ENSDLAG00005030879	ENSDLAG00005028237	ENSDLAG00005006506	ENSDLAG00005028894	ENSDLAG00005033993	ENSDLAG00005014379	ENSDLAG00005014388	ENSDLAG00005014404	hmgb1b (ENSDLAG00005014427) #34	ENSDLAG00005030870	ENSDLAG00005014461	b3glcta (ENSDLAG00005014490) #28	ENSDLAG00005014926 #26	ENSDLAG00005019257	ENSDLAG00005019288 #22	ENSDLAG00005019327 ##19	ENSDLAG00005019297	NBEA (ENSDLAG00005020383) #15	mab21l1 (ENSDLAG00005026626) #16	dclk1b (ENSDLAG00005022671) #14	spartb (ENSDLAG00005022955) #11	postnb (ENSDLAG00005022976)	trpc4b (ENSDLAG00005023083)	frem2b (ENSDLAG00005023125)	ENSDLAG00005023260	ENSDLAG00005023292	arfip2a (ENSDLAG00005023301)	ENSDLAG00005023325	ENSDLAG00005023379	ENSDLAG00005023461
Percomorphaceae_D	ANCESTRAL SPECIES	9	ENSGT00940000163767.a.a	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Anabantaria	ANCESTRAL SPECIES	9	ENSGT00940000163767.a.a	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210
Anabantoidei	ANCESTRAL SPECIES	14	ENSGT00940000160721	ENSGT00940000162761.b.a	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.A.m	ENSGT00940000161369.A.n	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d	ENSGT00950000183120.i.a #34	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00950000183061.a.b.a.a ##19	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154934.B #15	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b	ENSGT00390000014210	ENSGT01010000222559
Climbing perch	MODERN SPECIES	4	ENSATEG00000028154	ENSATEG00000027577	ENSATEG00000026673	ENSATEG00000029620	ENSATEG00000013362	ENSATEG00000013320	ENSATEG00000013289	or30bw1 (ENSATEG00000013217)	ENSATEG00000028294	hmgb1b (ENSATEG00000013167) #34	ENSATEG00000013065	b3glcta (ENSATEG00000013018) #28	FRY (ENSATEG00000012790) #26	ENSATEG00000025629	ENSATEG00000012756 #24	ENSATEG00000012703 #22	trmt9b (ENSATEG00000012676)	ENSATEG00000012577 ##19	mab21l1 (ENSATEG00000029609) #16	NBEA (ENSATEG00000012380) #15	dclk1b (ENSATEG00000012305) #14	spartb (ENSATEG00000012284) #11	postnb (ENSATEG00000012262)	trpc4b (ENSATEG00000012249)	frem2b (ENSATEG00000012153)	ENSATEG00000012089	ENSATEG00000025615	arfip2a (ENSATEG00000011900)	ENSATEG00000011818	ENSATEG00000011770	ENSATEG00000011790
Siamese fighting fish	MODERN SPECIES	4	CHRNA10 (ENSBSLG00000012972)	ENSBSLG00000012975	ENSBSLG00000012976	or15.37 (ENSBSLG00000012977)	ENSBSLG00000012983	ENSBSLG00000012985	ENSBSLG00000012987	ENSBSLG00000012992	ENSBSLG00000012994	or30bt5 (ENSBSLG00000013056)	ENSBSLG00000013094	hmgb1b (ENSBSLG00000013129) #34	ENSBSLG00000013202	b3glcta (ENSBSLG00000013330) #28	brca2 (ENSBSLG00000016643) #24	ENSBSLG00000016850 #22	trmt9b (ENSBSLG00000016886)	ENSBSLG00000016967 ##19	NBEA (ENSBSLG00000018282) #15	mab21l1 (ENSBSLG00000019182) #16	dclk1b (ENSBSLG00000019205) #14	spartb (ENSBSLG00000019597) #11	postnb (ENSBSLG00000019608)	trpc4b (ENSBSLG00000019640)	frem2b (ENSBSLG00000019672)	TRIM3 (ENSBSLG00000019712)	ENSBSLG00000020195	arfip2a (ENSBSLG00000020202)	ENSBSLG00000020224	ENSBSLG00000020246	urb1 (ENSBSLG00000020257)
Zig-zag eel	MODERN SPECIES	4	ENSMAMG00000010227	or15.37 (ENSMAMG00000010237)	or30bt5 (ENSMAMG00000010243)	ENSMAMG00000010254	ENSMAMG00000027123	ENSMAMG00000025194	ENSMAMG00000010345	ENSMAMG00000010375	ENSMAMG00000010400	ENSMAMG00000026363	hmgb1b (ENSMAMG00000028730) #34	ENSMAMG00000010497	b3glcta (ENSMAMG00000010550) #28	FRY (ENSMAMG00000010569) #26	ENSMAMG00000025767 #24	ENSMAMG00000025711 #22	trmt9b (ENSMAMG00000010689)	ENSMAMG00000010693	ENSMAMG00000010704 ##19	NBEA (ENSMAMG00000010749) #15	mab21l1 (ENSMAMG00000025105) #16	ENSMAMG00000025592 #14	dclk1b (ENSMAMG00000010852) #14	spartb (ENSMAMG00000010872) #11	postnb (ENSMAMG00000010896)	trpc4b (ENSMAMG00000010937)	frem2b (ENSMAMG00000010988)	ENSMAMG00000011044	ENSMAMG00000011077	arfip2a (ENSMAMG00000011094)	ENSMAMG00000011158
Carangaria	ANCESTRAL SPECIES	8	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d.h	ENSGT00940000163878	ENSGT00940000155719.a.d.g.a	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Pleuronectoidei	ANCESTRAL SPECIES	59	ENSGT00940000162761.b.a	ENSGT00940000163767.a.a	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000155719.a.d.h	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00940000177583	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11
Tongue sole	MODERN SPECIES	14	ENSCSEG00000012052	ENSCSEG00000012043	ENSCSEG00000012033	ENSCSEG00000012020	ENSCSEG00000011913	ENSCSEG00000011896	ENSCSEG00000011707	ENSCSEG00000011485	ENSCSEG00000011311	ENSCSEG00000011285	ENSCSEG00000011263	olfcj1 (ENSCSEG00000011253)	olfcg6 (ENSCSEG00000011183)	FRY (ENSCSEG00000011129) #26	ENSCSEG00000011108	ENSCSEG00000011096 #22	trmt9b (ENSCSEG00000011092)	ENSCSEG00000011055 ##19	socs9 (ENSCSEG00000011042)	SAMD4B (ENSCSEG00000011024)	ca4b (ENSCSEG00000010983)	YWHAG (ENSCSEG00000010975)	camkk1b (ENSCSEG00000010927)	ENSCSEG00000010750	ENSCSEG00000010700	P4HA3 (ENSCSEG00000010692)	or95a1 (ENSCSEG00000010679)	diabloa (ENSCSEG00000010664)	ENSCSEG00000010650	ENSCSEG00000010645	ENSCSEG00000010638
Turbot	MODERN SPECIES	15	ENSSMAG00000005810	or71aq1 (ENSSMAG00000005819)	or15.37 (ENSSMAG00000005833)	ENSSMAG00000025269	ENSSMAG00000005961	ENSSMAG00000034062	ENSSMAG00000021638	ENSSMAG00000022599	hmgb1b (ENSSMAG00000006047) #34	ENSSMAG00000006057	ENSSMAG00000036967	b3glcta (ENSSMAG00000006122) #28	FRY (ENSSMAG00000006208) #26	ENSSMAG00000032808	ENSSMAG00000006383 #24	ENSSMAG00000006437 #22	trmt9b (ENSSMAG00000006457)	ENSSMAG00000006474	ENSSMAG00000006495 ##19	NBEA (ENSSMAG00000006653) #15	mab21l1 (ENSSMAG00000006847) #16	dclk1b (ENSSMAG00000006855) #14	spartb (ENSSMAG00000006911) #11	hnf1ba (ENSSMAG00000006964)	dynll2a (ENSSMAG00000007008)	srsf1a (ENSSMAG00000007018)	aldoca (ENSSMAG00000007026)	ENSSMAG00000024873	ENSSMAG00000007096	ENSSMAG00000007178	glod4 (ENSSMAG00000007186)
Carangaria_A	ANCESTRAL SPECIES	10	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000161369.B.b.a.a.d	ENSGT00940000155719.a.d.g.a	ENSGT00940000155719.a.d.h	ENSGT00940000163878	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Barramundi perch	MODERN SPECIES	119	ENSLCAG00010013680	or30bt5 (ENSLCAG00010013683)	ENSLCAG00010013689	ENSLCAG00010013693	ENSLCAG00010013696	ENSLCAG00010013699	ENSLCAG00010013703	ENSLCAG00010013705	hmgb1b (ENSLCAG00010013707) #34	ENSLCAG00010013712	ENSLCAG00010013713	b3glcta (ENSLCAG00010013728) #28	FRY (ENSLCAG00010013833) #26	brca2 (ENSLCAG00010014215) #24	ENSLCAG00010014228	ENSLCAG00010014232 #22	trmt9b (ENSLCAG00010014235)	ENSLCAG00010014253 ##19	NBEA (ENSLCAG00010014320) #15	mab21l1 (ENSLCAG00010014425) #16	dclk1b (ENSLCAG00010014431) #14	spartb (ENSLCAG00010014441) #11	postnb (ENSLCAG00010014455)	trpc4b (ENSLCAG00010014475)	frem2b (ENSLCAG00010014512)	TRIM3 (ENSLCAG00010014620)	ENSLCAG00010014669	arfip2a (ENSLCAG00010014679)	ENSLCAG00010014690	urb1 (ENSLCAG00010014723)	ENSLCAG00010014840
Seriola	ANCESTRAL SPECIES	65	ENSGT00940000165062	ENSGT00940000163767.a.b	ENSGT00940000161369.A	ENSGT00940000161369.B.b.a.b	ENSGT00940000161369.B.b.a.a.c	ENSGT00940000161369.B.b.a.a.d.f.a	ENSGT00940000161369.B.b.a.a.d.f.b	ENSGT00940000155719.a.d.g.a	ENSGT00940000155719.a.d.h	ENSGT00950000183120.i.a #34	ENSGT00940000175014	ENSGT00940000162967	ENSGT00940000155499.c #28	ENSGT00610000086058.b.w.a #26	ENSGT00390000003602 #24	ENSGT00940000161440 #22	ENSGT00940000165093	ENSGT00940000166005	ENSGT00950000183061.a.b.a.a ##19	ENSGT00940000175843.b	ENSGT00940000154934.B #15	ENSGT01050000244827.C.c.a.b #16	ENSGT00940000154956.sb.a #14	ENSGT00390000012235.k #11	ENSGT00530000063860.b.c	ENSGT01060000248594.e.b.a	ENSGT00940000155313.g.b	ENSGT00940000158173.f	ENSGT00940000155128.a.a.a.a	ENSGT00950000183040.A.a.c.a	ENSGT00940000163671.a.a.b
Greater amberjack	MODERN SPECIES	59	or15.37 (ENSSDUG00000010938)	ENSSDUG00000010952	ENSSDUG00000010965	or30bt5 (ENSSDUG00000010977)	ENSSDUG00000011001	ENSSDUG00000011029	ENSSDUG00000011046	ENSSDUG00000011070	ENSSDUG00000011079	hmgb1b (ENSSDUG00000011094) #34	ENSSDUG00000011113	ENSSDUG00000011122	b3glcta (ENSSDUG00000011155) #28	FRY (ENSSDUG00000011185) #26	brca2 (ENSSDUG00000011325) #24	ENSSDUG00000011357 #22	trmt9b (ENSSDUG00000011364)	ENSSDUG00000011374	ENSSDUG00000011380	ENSSDUG00000011405 ##19	ENSSDUG00000011524 ##15	NBEA (ENSSDUG00000011541) #15	mab21l1 (ENSSDUG00000011629) #16	dclk1b (ENSSDUG00000011649) #14	spartb (ENSSDUG00000011723) #11	postnb (ENSSDUG00000011770)	trpc4b (ENSSDUG00000011898)	frem2b (ENSSDUG00000011955)	TRIM3 (ENSSDUG00000012030)	ENSSDUG00000012088	arfip2a (ENSSDUG00000012103)
Yellowtail amberjack	MODERN SPECIES	2620	or71as2 (ENSSLDG00000004582)	or15.37 (ENSSLDG00000004614)	or80a5 (ENSSLDG00000004644)	or30bt5 (ENSSLDG00000004660)	ENSSLDG00000004688	ENSSLDG00000004699	ENSSLDG00000004723	ENSSLDG00000004773	ENSSLDG00000004818	ENSSLDG00000004839	hmgb1b (ENSSLDG00000004865) #34	ENSSLDG00000004898	b3glcta (ENSSLDG00000005012) #28	FRY (ENSSLDG00000005074) #26	brca2 (ENSSLDG00000005236) #24	ENSSLDG00000005272 #22	trmt9b (ENSSLDG00000005317)	ENSSLDG00000005339	ENSSLDG00000005381 ##19	ENSSLDG00000005521	NBEA (ENSSLDG00000005552) #15	mab21l1 (ENSSLDG00000005686) #16