Rodentia_A	ANCESTRAL SPECIES	21	ENSGT00390000017162 #8	ENSGT00940000160296 #9	ENSGT00940000161674 #10	ENSGT00940000161687 #11	ENSGT00390000002931 #12	ENSGT00910000146927	ENSGT00950000182936.a.b.b #13	ENSGT00950000182850.a.b.b #14	ENSGT00940000161965 #15	ENSGT00940000161418 #16	ENSGT00940000153139.B.a #17	ENSGT00940000159868 #18	ENSGT00940000156168.B #19	ENSGT00940000154078.a.b	ENSGT00940000155068.b #21	ENSGT00940000159352 #22	ENSGT00940000157178 #23	ENSGT00390000010950 #24	ENSGT01050000244968.c #25	ENSGT00940000157357 #26	ENSGT00680000101436 #27	ENSGT00940000156591 #29	ENSGT00390000012054.b #31	ENSGT00390000004697 #34	ENSGT00940000160268 #36	ENSGT00940000161766 #37	ENSGT00940000161969	ENSGT00390000004179	ENSGT00940000159346	ENSGT00770000121728	ENSGT00950000183499
Hystricomorpha	ANCESTRAL SPECIES	21	ENSGT00940000157176 #7	ENSGT00390000017162 #8	ENSGT00940000160296 #9	ENSGT00940000161674 #10	ENSGT00940000161687 #11	ENSGT00390000002931 #12	ENSGT00950000182936.a.b.b #13	ENSGT00950000182850.a.b.b #14	ENSGT00940000161965 #15	ENSGT00940000161418 #16	ENSGT00940000153139.B.a #17	ENSGT00940000159868 #18	ENSGT00940000156168.B #19	ENSGT00940000154078.a.b	ENSGT00940000155068.b #21	ENSGT00940000159352 #22	ENSGT00940000157178 #23	ENSGT00390000010950 #24	ENSGT01050000244968.c #25	ENSGT00940000157357 #26	ENSGT00680000101436 #27	ENSGT00940000156591 #29	ENSGT00390000012054.b.ib ##31	ENSGT00390000012054.b.hb.a ##31	ENSGT00390000004697 #34	ENSGT00940000160268 #36	ENSGT00940000161766 #37	ENSGT00940000161969	ENSGT00390000004179	ENSGT00940000159346	ENSGT00770000121728
Naked mole-rat female	MODERN SPECIES	25	BMP1 (ENSHGLG00000013962) #7	SFTPC (ENSHGLG00000013617) #8	LGI3 (ENSHGLG00000032024) #9	REEP4 (ENSHGLG00000016443) #10	HR (ENSHGLG00000013891) #11	NUDT18 (ENSHGLG00000009076) #12	FHIP2B (ENSHGLG00000012251) #13	DMTN (ENSHGLG00000007946) #14	FGF17 (ENSHGLG00000007312) #15	NPM2 (ENSHGLG00000006243) #16	XPO7 (ENSHGLG00000008763) #17	DOK2 (ENSHGLG00000015292) #18	GFRA2 (ENSHGLG00000015954) #19	ENSHGLG00000048578 #20	ATP6V1B2 (ENSHGLG00000007965) #21	SLC18A1 (ENSHGLG00000007001) #22	LPL (ENSHGLG00000005162) #23	INTS10 (ENSHGLG00000015823) #24	CSGALNACT1 (ENSHGLG00000016296) #25	SH2D4A (ENSHGLG00000017844) #26	ENSHGLG00000010280 #27	ENSHGLG00000005452 #28	ENSHGLG00000039432 #29	ENSHGLG00000044555 #30	ENSHGLG00000041096 #31	ENSHGLG00000044170 #32	ENSHGLG00000015180 #33	ENSHGLG00000014899 #34	ENSHGLG00000015330 #35	NPY1R (ENSHGLG00000039833) #36	NPY5R (ENSHGLG00000017420) #37
Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT00940000157176 #7	ENSGT00390000017162 #8	ENSGT00940000160296 #9	ENSGT00940000161674 #10	ENSGT00940000161687 #11	ENSGT00390000002931 #12	ENSGT00950000182936.a.b.b #13	ENSGT00950000182850.a.b.b #14	ENSGT00940000161965 #15	ENSGT00940000161418 #16	ENSGT00940000153139.B.a #17	ENSGT00940000159868 #18	ENSGT00940000156168.B #19	ENSGT00940000154078.a.b	ENSGT00940000155068.b #21	ENSGT00940000159352 #22	ENSGT00940000157178 #23	ENSGT00390000010950 #24	ENSGT01050000244968.c #25	ENSGT00940000157357 #26	ENSGT00940000156591 #29	ENSGT00390000012054.b.hb.b #31	ENSGT00390000012054.b.hb.a ##31	ENSGT00390000004697 #34	ENSGT00940000160268 #36	ENSGT00940000161766 #37	ENSGT00940000161969	ENSGT00390000004179	ENSGT00940000159346	ENSGT01100000263802	ENSGT00980000198737
Guinea pig	MODERN SPECIES	1	BMP1 (ENSCPOG00000019973) #7	SFTPC (ENSCPOG00000021731) #8	LGI3 (ENSCPOG00000037841) #9	REEP4 (ENSCPOG00000003298) #10	HR (ENSCPOG00000003292) #11	NUDT18 (ENSCPOG00000030205) #12	FHIP2B (ENSCPOG00000003287) #13	DMTN (ENSCPOG00000006214) #14	FGF17 (ENSCPOG00000014655) #15	NPM2 (ENSCPOG00000039799) #16	XPO7 (ENSCPOG00000004506) #17	DOK2 (ENSCPOG00000001726) #18	GFRA2 (ENSCPOG00000027454) #19	LZTS1 (ENSCPOG00000034547)	ATP6V1B2 (ENSCPOG00000001749) #21	SLC18A1 (ENSCPOG00000001743) #22	LPL (ENSCPOG00000004054) #23	INTS10 (ENSCPOG00000011817) #24	CSGALNACT1 (ENSCPOG00000005259) #25	ENSCPOG00000030817	SH2D4A (ENSCPOG00000005255) #26	ENSCPOG00000037424	PSD3 (ENSCPOG00000002659) #29	ENSCPOG00000019452 #31	ENSCPOG00000035688 ##31	ENSCPOG00000009771 ##31	NAF1 (ENSCPOG00000010331) #34	NPY1R (ENSCPOG00000031707) #36	Npy5r (ENSCPOG00000011688) #37	TKTL2 (ENSCPOG00000019878)	TMA16 (ENSCPOG00000038434)
Hystricomorpha_b	ANCESTRAL SPECIES	30	ENSGT00940000157176 #7	ENSGT00390000017162 #8	ENSGT00940000160296 #9	ENSGT00940000161674 #10	ENSGT00940000161687 #11	ENSGT00390000002931 #12	ENSGT00950000182936.a.b.b #13	ENSGT00950000182850.a.b.b #14	ENSGT00940000161965 #15	ENSGT00940000161418 #16	ENSGT00940000153139.B.a #17	ENSGT00940000159868 #18	ENSGT00940000156168.B #19	ENSGT00940000154078.a.b	ENSGT00940000155068.b #21	ENSGT00940000159352 #22	ENSGT00940000157178 #23	ENSGT00390000010950 #24	ENSGT01050000244968.c #25	ENSGT00940000157357 #26	ENSGT00940000156591 #29	ENSGT00390000012054.b.hb.b #31	ENSGT00390000012054.b.hb.a ##31	ENSGT00390000004697 #34	ENSGT00940000160268 #36	ENSGT00940000161766 #37	ENSGT00940000161969	ENSGT00390000004179	ENSGT00940000159346	ENSGT00980000198737	ENSGT00940000155329.b.a.a
Degu	MODERN SPECIES	77	BMP1 (ENSODEG00000007288) #7	SFTPC (ENSODEG00000007026) #8	LGI3 (ENSODEG00000006726) #9	REEP4 (ENSODEG00000006662) #10	HR (ENSODEG00000005767) #11	NUDT18 (ENSODEG00000007621) #12	FHIP2B (ENSODEG00000008184) #13	DMTN (ENSODEG00000005818) #14	FGF17 (ENSODEG00000005311) #15	NPM2 (ENSODEG00000006433) #16	XPO7 (ENSODEG00000007208) #17	ENSODEG00000005626 #18	GFRA2 (ENSODEG00000005386) #19	LZTS1 (ENSODEG00000007484)	ENSODEG00000005521 #21	SLC18A1 (ENSODEG00000005261) #22	LPL (ENSODEG00000006165) #23	INTS10 (ENSODEG00000006587) #24	CSGALNACT1 (ENSODEG00000005728) #25	SH2D4A (ENSODEG00000006278) #26	ENSODEG00000006062 #29	ENSODEG00000005985 #29	ENSODEG00000019170 ##31	ENSODEG00000019368 ##31	ENSODEG00000006419	NAF1 (ENSODEG00000006528) #34	NPY1R (ENSODEG00000006377) #36	NPY5R (ENSODEG00000005343) #37	ENSODEG00000007708	TKTL2 (ENSODEG00000019464)	ENSODEG00000007438
Long-tailed chinchilla	MODERN SPECIES	110	BMP1 (ENSCLAG00000015290) #7	SFTPC (ENSCLAG00000017002) #8	LGI3 (ENSCLAG00000014697) #9	REEP4 (ENSCLAG00000013685) #10	HR (ENSCLAG00000013490) #11	ENSCLAG00000012239 #12	FHIP2B (ENSCLAG00000017275) #13	DMTN (ENSCLAG00000015647) #14	FGF17 (ENSCLAG00000014705) #15	NPM2 (ENSCLAG00000013600) #16	XPO7 (ENSCLAG00000012121) #17	DOK2 (ENSCLAG00000013076) #18	GFRA2 (ENSCLAG00000013860) #19	LZTS1 (ENSCLAG00000015813)	ATP6V1B2 (ENSCLAG00000014575) #21	SLC18A1 (ENSCLAG00000014695) #22	LPL (ENSCLAG00000014046) #23	INTS10 (ENSCLAG00000012932) #24	CSGALNACT1 (ENSCLAG00000015214) #25	SH2D4A (ENSCLAG00000014633) #26	ENSCLAG00000013492	PSD3 (ENSCLAG00000013610) #29	ENSCLAG00000013815 #31	ENSCLAG00000015279 ##31	ENSCLAG00000017207 ##31	NAF1 (ENSCLAG00000017209) #34	NPY1R (ENSCLAG00000015952) #36	NPY5R (ENSCLAG00000015988) #37	TKTL2 (ENSCLAG00000017876)	TMA16 (ENSCLAG00000016351)	MARCHF1 (ENSCLAG00000014711)
Sciuridae	ANCESTRAL SPECIES	29	ENSGT00390000017162 #8	ENSGT00940000160296 #9	ENSGT00940000161674 #10	ENSGT00940000161687 #11	ENSGT00390000002931 #12	ENSGT00910000146927	ENSGT00950000182936.a.b.b #13	ENSGT00950000182850.a.b.b #14	ENSGT00940000161965 #15	ENSGT00940000161418 #16	ENSGT00940000153139.B.a #17	ENSGT00940000159868 #18	ENSGT00940000156168.B #19	ENSGT00940000154078.a.b	ENSGT00940000155068.b #21	ENSGT00940000159352 #22	ENSGT00940000157178 #23	ENSGT00390000010950 #24	ENSGT01050000244968.c #25	ENSGT00940000157357 #26	ENSGT00680000101436 #27	ENSGT00940000156591 #29	ENSGT00390000012054.b #31	ENSGT00390000004697 #34	ENSGT00940000160268 #36	ENSGT00940000161766 #37	ENSGT00940000161969	ENSGT00390000004179	ENSGT00940000159346	ENSGT00770000121728	ENSGT00950000183499
Marmotini	ANCESTRAL SPECIES	30	ENSGT00390000017162 #8	ENSGT00940000160296 #9	ENSGT00940000161674 #10	ENSGT00940000161687 #11	ENSGT00390000002931 #12	ENSGT00910000146927	ENSGT00950000182936.a.b.b #13	ENSGT00950000182850.a.b.b #14	ENSGT00940000161965 #15	ENSGT00940000161418 #16	ENSGT00940000153139.B.a #17	ENSGT00940000159868 #18	ENSGT00940000156168.B #19	ENSGT00940000154078.a.b	ENSGT00940000155068.b #21	ENSGT00940000159352 #22	ENSGT00940000157178 #23	ENSGT00390000010950 #24	ENSGT01050000244968.c #25	ENSGT00940000157357 #26	ENSGT00680000101436 #27	ENSGT00940000156591 #29	ENSGT00390000012054.b.jb #31	ENSGT00390000012054.b.kb #31	ENSGT00390000004697 #34	ENSGT00940000160268 #36	ENSGT00940000161766 #37	ENSGT00940000161969	ENSGT00390000004179	ENSGT00940000159346	ENSGT00770000121728
Alpin marmot	MODERN SPECIES	61	SFTPC (ENSMMMG00000017400) #8	LGI3 (ENSMMMG00000017411) #9	REEP4 (ENSMMMG00000017428) #10	HR (ENSMMMG00000017436) #11	NUDT18 (ENSMMMG00000017482) #12	ENSMMMG00000017497	FHIP2B (ENSMMMG00000017499) #13	DMTN (ENSMMMG00000017508) #14	FGF17 (ENSMMMG00000017798) #15	NPM2 (ENSMMMG00000017801) #16	XPO7 (ENSMMMG00000017808) #17	DOK2 (ENSMMMG00000017998) #18	GFRA2 (ENSMMMG00000018003) #19	LZTS1 (ENSMMMG00000018023)	ATP6V1B2 (ENSMMMG00000018032) #21	SLC18A1 (ENSMMMG00000018050) #22	LPL (ENSMMMG00000018057) #23	INTS10 (ENSMMMG00000018091) #24	CSGALNACT1 (ENSMMMG00000018218) #25	SH2D4A (ENSMMMG00000018235) #26	ENSMMMG00000018256 #27	ENSMMMG00000018272 #29	ENSMMMG00000018320 #31	ENSMMMG00000018330 #31
Marmotini_b	ANCESTRAL SPECIES	87	ENSGT00940000157176 #7	ENSGT00390000017162 #8	ENSGT00940000160296 #9	ENSGT00940000161674 #10	ENSGT00940000161687 #11	ENSGT00390000002931 #12	ENSGT00950000182936.a.b.b #13	ENSGT00950000182850.a.b.b #14	ENSGT00940000161965 #15	ENSGT00940000161418 #16	ENSGT00940000153139.B.a #17	ENSGT00940000159868 #18	ENSGT00940000156168.B #19	ENSGT00940000154078.a.b	ENSGT00940000155068.b #21	ENSGT00940000159352 #22	ENSGT00390000014557.p	ENSGT00940000157178 #23	ENSGT00390000010950 #24	ENSGT01050000244968.c #25	ENSGT00940000157357 #26	ENSGT00680000101436 #27	ENSGT00940000156591 #29	ENSGT00390000012054.b.jb #31	ENSGT00390000012054.b.kb #31	ENSGT00390000004697 #34	ENSGT00940000160268 #36	ENSGT00940000161766 #37	ENSGT00940000161969	ENSGT00390000004179	ENSGT00940000159346
Squirrel	MODERN SPECIES	155	BMP1 (ENSSTOG00000016516) #7	SFTPC (ENSSTOG00000016515) #8	LGI3 (ENSSTOG00000016514) #9	REEP4 (ENSSTOG00000016513) #10	HR (ENSSTOG00000016512) #11	NUDT18 (ENSSTOG00000029142) #12	FHIP2B (ENSSTOG00000015235) #13	DMTN (ENSSTOG00000027524) #14	FGF17 (ENSSTOG00000013628) #15	NPM2 (ENSSTOG00000013623) #16	XPO7 (ENSSTOG00000013611) #17	DOK2 (ENSSTOG00000021120) #18	GFRA2 (ENSSTOG00000026519) #19	LZTS1 (ENSSTOG00000025467)	ATP6V1B2 (ENSSTOG00000022596) #21	SLC18A1 (ENSSTOG00000011464) #22	ENSSTOG00000033131	LPL (ENSSTOG00000001477) #23	INTS10 (ENSSTOG00000001464) #24	CSGALNACT1 (ENSSTOG00000025203) #25	SH2D4A (ENSSTOG00000022701) #26	ENSSTOG00000020963 #27	PSD3 (ENSSTOG00000000985) #29	ENSSTOG00000031895 #31	ENSSTOG00000033053 #31	NAF1 (ENSSTOG00000023858) #34	NPY1R (ENSSTOG00000007201) #36	NPY5R (ENSSTOG00000021377) #37	TKTL2 (ENSSTOG00000005500)	TMA16 (ENSSTOG00000024763)	MARCHF1 (ENSSTOG00000005521)
Arctic ground squirrel	MODERN SPECIES	186	SFTPC (ENSUPAG00010017841) #8	LGI3 (ENSUPAG00010017847) #9	REEP4 (ENSUPAG00010017856) #10	HR (ENSUPAG00010017864) #11	ENSUPAG00010017898	NUDT18 (ENSUPAG00010017905) #12	FHIP2B (ENSUPAG00010017910) #13	DMTN (ENSUPAG00010017971) #14	FGF17 (ENSUPAG00010018399) #15	NPM2 (ENSUPAG00010018414) #16	XPO7 (ENSUPAG00010018440) #17	DOK2 (ENSUPAG00010018499) #18	GFRA2 (ENSUPAG00010018514) #19	LZTS1 (ENSUPAG00010018548)	ATP6V1B2 (ENSUPAG00010018554) #21	SLC18A1 (ENSUPAG00010018578) #22
Eurasian red squirrel	MODERN SPECIES	14	BMP1 (ENSSVLG00005004715) #7	SFTPC (ENSSVLG00005004845) #8	LGI3 (ENSSVLG00005004897) #9	REEP4 (ENSSVLG00005004964) #10	HR (ENSSVLG00005005002) #11	NUDT18 (ENSSVLG00005005035) #12	FHIP2B (ENSSVLG00005005055) #13	DMTN (ENSSVLG00005005156) #14	FGF17 (ENSSVLG00005005293) #15	NPM2 (ENSSVLG00005005355) #16	XPO7 (ENSSVLG00005005524) #17	DOK2 (ENSSVLG00005005819) #18	GFRA2 (ENSSVLG00005005872) #19	LZTS1 (ENSSVLG00005005986)	ATP6V1B2 (ENSSVLG00005006065) #21	SLC18A1 (ENSSVLG00005006162) #22	LPL (ENSSVLG00005006464) #23	INTS10 (ENSSVLG00005006649) #24	CSGALNACT1 (ENSSVLG00005006697) #25	SH2D4A (ENSSVLG00005006765) #26	ENSSVLG00005006854 #27	ENSSVLG00005006863	PSD3 (ENSSVLG00005006930) #29	ENSSVLG00005007216 #31	ENSSVLG00005000128 #31	ENSSVLG00005000142	NAF1 (ENSSVLG00005000303) #34	NPY1R (ENSSVLG00005000326) #36	NPY5R (ENSSVLG00005000351) #37	TKTL2 (ENSSVLG00005000366)	ENSSVLG00005000429