Mus_A	ANCESTRAL SPECIES	8	ENSGT00390000000719	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00940000162643	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00940000164244.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a	ENSGT00940000154078.a.b #20	ENSGT00940000155068.b #21	ENSGT00940000159352 #22	ENSGT00940000157178 #23	ENSGT00390000010950 #24	ENSGT01050000244968.c #25	ENSGT00940000157357 #26	ENSGT00940000156591 #28	ENSGT00390000012054.b.ob #29	ENSGT00390000012054.b.nb.a #30	ENSGT00390000012054.b.nb.b #31	ENSGT00390000004697	ENSGT00940000160268	ENSGT00940000161766	ENSGT00940000161969	ENSGT00390000004179	ENSGT00940000159346	ENSGT00770000121728
Mus_B	ANCESTRAL SPECIES	6	ENSGT00390000008152.B.a	ENSGT00940000162643	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00940000164244.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a	ENSGT00530000064407.b.b.d.e.a.b.a	ENSGT00940000153805.q.b.a.a.a.a.b.c #19	ENSGT00940000154078.a.b #20	ENSGT00940000155068.b #21	ENSGT00940000159352 #22	ENSGT00940000157178 #23	ENSGT00390000010950 #24	ENSGT01050000244968.c #25	ENSGT00940000157357 #26	ENSGT00940000156591 #28	ENSGT00390000012054.b.ob #29	ENSGT00390000012054.b.nb.a #30	ENSGT00390000012054.b.nb.b #31	ENSGT00390000004697.g	ENSGT00940000160268	ENSGT00940000161766	ENSGT00940000161969	ENSGT00390000004179	ENSGT00940000159346	ENSGT00770000121728
Mus_C	ANCESTRAL SPECIES	5	ENSGT00390000008152.B.a	ENSGT00940000162643	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00940000164244.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a	ENSGT00530000064407.b.b.d.e.a.b.a	ENSGT00940000153805.q.b.a.a.a.a.b.c #19	ENSGT00940000154078.a.b #20	ENSGT00940000155068.b #21	ENSGT00940000159352 #22	ENSGT00940000157178 #23	ENSGT00390000010950 #24	ENSGT01050000244968.c #25	ENSGT00940000157357 #26	ENSGT00940000156591 #28	ENSGT00390000012054.b.ob #29	ENSGT00390000012054.b.nb.a #30	ENSGT00390000012054.b.nb.b #31	ENSGT00390000004697.g	ENSGT00940000160268	ENSGT00940000161766	ENSGT00940000161969	ENSGT00390000004179	ENSGT00940000159346	ENSGT00770000121728
Steppe mouse	MODERN SPECIES	3405													ENSMSIG00000002332 #19	Lzts1 (ENSMSIG00000002251) #20	Atp6v1b2 (ENSMSIG00000002208) #21	Slc18a1 (ENSMSIG00000002103) #22	Lpl (ENSMSIG00000031051) #23	Ints10 (ENSMSIG00000031042) #24	Csgalnact1 (ENSMSIG00000031039) #25	Sh2d4a (ENSMSIG00000031038) #26	ENSMSIG00000031035 #27	Psd3 (ENSMSIG00000031001) #28	Nat3 (ENSMSIG00000030998) #29	Nat2 (ENSMSIG00000030997) #30	Nat1 (ENSMSIG00000030994) #31
spretus	MODERN SPECIES	17	Pbx4 (MGP_SPRETEiJ_G0032237)	Lpar2 (MGP_SPRETEiJ_G0032236)	Gmip (MGP_SPRETEiJ_G0032235)	Atp13a1 (MGP_SPRETEiJ_G0032234)	Zfp866 (MGP_SPRETEiJ_G0032233)	MGP_SPRETEiJ_G0032232	Zfp963 (MGP_SPRETEiJ_G0032231)	Zfp869 (MGP_SPRETEiJ_G0032230)	Zfp964 (MGP_SPRETEiJ_G0032229)	Zfp868 (MGP_SPRETEiJ_G0032228)	MGP_SPRETEiJ_G0032227	D130040H23Rik (MGP_SPRETEiJ_G0032226)	Zfp930 (MGP_SPRETEiJ_G0032225) #19	Lzts1 (MGP_SPRETEiJ_G0032224) #20	Atp6v1b2 (MGP_SPRETEiJ_G0032223) #21	Slc18a1 (MGP_SPRETEiJ_G0032222) #22	Lpl (MGP_SPRETEiJ_G0032221) #23	Ints10 (MGP_SPRETEiJ_G0032220) #24	Csgalnact1 (MGP_SPRETEiJ_G0032219) #25	Sh2d4a (MGP_SPRETEiJ_G0032218) #26	MGP_SPRETEiJ_G0032217 #28	Nat3 (MGP_SPRETEiJ_G0032216) #29	Nat2 (MGP_SPRETEiJ_G0032215) #30	Nat1 (MGP_SPRETEiJ_G0032214) #31	MGP_SPRETEiJ_G0032213	Npy1r (MGP_SPRETEiJ_G0032212)	Npy5r (MGP_SPRETEiJ_G0032211)	Tktl2 (MGP_SPRETEiJ_G0032210)	Tma16 (MGP_SPRETEiJ_G0032209)	Marchf1 (MGP_SPRETEiJ_G0032208)	MGP_SPRETEiJ_G0032207
Mouse	MODERN SPECIES	17	Gmip (ENSMUSG00000036246)	Atp13a1 (ENSMUSG00000031862)	Zfp866 (ENSMUSG00000043090)	Gm20422 (ENSMUSG00000092544)	Zfp963 (ENSMUSG00000092260)	Zfp869 (ENSMUSG00000054648)	Zfp964 (ENSMUSG00000091764)	Zfp868 (ENSMUSG00000060427)	Potefam3d (ENSMUSG00000106824)	Potefam3c (ENSMUSG00000107280)	Gm10033 (ENSMUSG00000110444)	D130040H23Rik (ENSMUSG00000079038)	Zfp930 (ENSMUSG00000059897) #19	Lzts1 (ENSMUSG00000036306) #20	Atp6v1b2 (ENSMUSG00000006273) #21	Slc18a1 (ENSMUSG00000036330) #22	Lpl (ENSMUSG00000015568) #23	Ints10 (ENSMUSG00000031864) #24	Csgalnact1 (ENSMUSG00000036356) #25	Sh2d4a (ENSMUSG00000053886) #26	Psd3 (ENSMUSG00000030465) #28	Nat3 (ENSMUSG00000056426) #29	Nat2 (ENSMUSG00000051147) #30	Nat1 (ENSMUSG00000025588) #31	Naf1 (ENSMUSG00000014907)	Npy1r (ENSMUSG00000036437)	Npy5r (ENSMUSG00000044014)	Tktl2 (ENSMUSG00000025519)	Tma16 (ENSMUSG00000025591)	Marchf1 (ENSMUSG00000036469)	Smim31 (ENSMUSG00000074300)
Ryukyu mouse	MODERN SPECIES	17	Yjefn3 (MGP_CAROLIEiJ_G0031121)	Cilp2 (MGP_CAROLIEiJ_G0031120)	Pbx4 (MGP_CAROLIEiJ_G0031119)	Lpar2 (MGP_CAROLIEiJ_G0031118)	Gmip (MGP_CAROLIEiJ_G0031117)	Atp13a1 (MGP_CAROLIEiJ_G0031116)	Zfp866 (MGP_CAROLIEiJ_G0031115)	MGP_CAROLIEiJ_G0031114	Zfp963 (MGP_CAROLIEiJ_G0031113)	Zfp869 (MGP_CAROLIEiJ_G0031112)	Zfp964 (MGP_CAROLIEiJ_G0031111)	Zfp868 (MGP_CAROLIEiJ_G0031110)	MGP_CAROLIEiJ_G0031109	Lzts1 (MGP_CAROLIEiJ_G0031108) #20	Atp6v1b2 (MGP_CAROLIEiJ_G0031107) #21	Slc18a1 (MGP_CAROLIEiJ_G0031106) #22	Lpl (MGP_CAROLIEiJ_G0031105) #23	Ints10 (MGP_CAROLIEiJ_G0031104) #24	Csgalnact1 (MGP_CAROLIEiJ_G0031103) #25	Sh2d4a (MGP_CAROLIEiJ_G0031102) #26	MGP_CAROLIEiJ_G0031101 #28	Nat3 (MGP_CAROLIEiJ_G0031100) #29	Nat2 (MGP_CAROLIEiJ_G0031099) #30	Nat1 (MGP_CAROLIEiJ_G0031098) #31	Naf1 (MGP_CAROLIEiJ_G0031097)	Npy1r (MGP_CAROLIEiJ_G0031096)	Npy5r (MGP_CAROLIEiJ_G0031095)	Tktl2 (MGP_CAROLIEiJ_G0031094)	Tma16 (MGP_CAROLIEiJ_G0031093)	Marchf1 (MGP_CAROLIEiJ_G0031092)	MGP_CAROLIEiJ_G0031091