Mus_A	ANCESTRAL SPECIES	8	ENSGT00390000000719	ENSGT00390000007227.b	ENSGT00390000008152.B.a	ENSGT00940000162643 #7	ENSGT01050000244941.B.c #8	ENSGT00950000183110.a #9	ENSGT00550000075064 #10	ENSGT00950000182755.b.a.a.b.a.a.k.a.a #11	ENSGT00940000164244.b #12	ENSGT00950000182755.b.a.a.b.a.a.k.b.a #13	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b #14	ENSGT00950000182755.b.a.a.b.a.a.k.b.b #15	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a #16	ENSGT00940000154078.a.b #20	ENSGT00940000155068.b #21	ENSGT00940000159352 #22	ENSGT00940000157178 #23	ENSGT00390000010950 #24	ENSGT01050000244968.c #25	ENSGT00940000157357 #26	ENSGT00940000156591 #27	ENSGT00390000012054.b.ob #28	ENSGT00390000012054.b.nb.a #29	ENSGT00390000012054.b.nb.b #30	ENSGT00390000004697 #31	ENSGT00940000160268 #32	ENSGT00940000161766 #33	ENSGT00940000161969 #34	ENSGT00390000004179 #35	ENSGT00940000159346 #36	ENSGT00770000121728
Mus_B	ANCESTRAL SPECIES	6	ENSGT00390000008152.B.a	ENSGT00940000162643 #7	ENSGT01050000244941.B.c #8	ENSGT00950000183110.a #9	ENSGT00550000075064 #10	ENSGT00950000182755.b.a.a.b.a.a.k.a.a #11	ENSGT00940000164244.b #12	ENSGT00950000182755.b.a.a.b.a.a.k.b.a #13	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b #14	ENSGT00950000182755.b.a.a.b.a.a.k.b.b #15	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a #16	ENSGT00530000064407.b.b.d.e.a.b.a #18	ENSGT00940000153805.q.b.a.a.a.a.b.c #19	ENSGT00940000154078.a.b #20	ENSGT00940000155068.b #21	ENSGT00940000159352 #22	ENSGT00940000157178 #23	ENSGT00390000010950 #24	ENSGT01050000244968.c #25	ENSGT00940000157357 #26	ENSGT00940000156591 #27	ENSGT00390000012054.b.ob #28	ENSGT00390000012054.b.nb.a #29	ENSGT00390000012054.b.nb.b #30	ENSGT00390000004697.g #31	ENSGT00940000160268 #32	ENSGT00940000161766 #33	ENSGT00940000161969 #34	ENSGT00390000004179 #35	ENSGT00940000159346 #36	ENSGT00770000121728
Mus_C	ANCESTRAL SPECIES	5	ENSGT00390000008152.B.a	ENSGT00940000162643 #7	ENSGT01050000244941.B.c #8	ENSGT00950000183110.a #9	ENSGT00550000075064 #10	ENSGT00950000182755.b.a.a.b.a.a.k.a.a #11	ENSGT00940000164244.b #12	ENSGT00950000182755.b.a.a.b.a.a.k.b.a #13	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b #14	ENSGT00950000182755.b.a.a.b.a.a.k.b.b #15	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a #16	ENSGT00530000064407.b.b.d.e.a.b.a #18	ENSGT00940000153805.q.b.a.a.a.a.b.c #19	ENSGT00940000154078.a.b #20	ENSGT00940000155068.b #21	ENSGT00940000159352 #22	ENSGT00940000157178 #23	ENSGT00390000010950 #24	ENSGT01050000244968.c #25	ENSGT00940000157357 #26	ENSGT00940000156591 #27	ENSGT00390000012054.b.ob #28	ENSGT00390000012054.b.nb.a #29	ENSGT00390000012054.b.nb.b #30	ENSGT00390000004697.g #31	ENSGT00940000160268 #32	ENSGT00940000161766 #33	ENSGT00940000161969 #34	ENSGT00390000004179 #35	ENSGT00940000159346 #36	ENSGT00770000121728
spretus	MODERN SPECIES	17	Pbx4 (MGP_SPRETEiJ_G0032237) #7	Lpar2 (MGP_SPRETEiJ_G0032236) #8	Gmip (MGP_SPRETEiJ_G0032235) #9	Atp13a1 (MGP_SPRETEiJ_G0032234) #10	Zfp866 (MGP_SPRETEiJ_G0032233) #11	MGP_SPRETEiJ_G0032232 #12	Zfp963 (MGP_SPRETEiJ_G0032231) #13	Zfp869 (MGP_SPRETEiJ_G0032230) #14	Zfp964 (MGP_SPRETEiJ_G0032229) #15	Zfp868 (MGP_SPRETEiJ_G0032228) #16	MGP_SPRETEiJ_G0032227 #17	D130040H23Rik (MGP_SPRETEiJ_G0032226) #18	Zfp930 (MGP_SPRETEiJ_G0032225) #19	Lzts1 (MGP_SPRETEiJ_G0032224) #20	Atp6v1b2 (MGP_SPRETEiJ_G0032223) #21	Slc18a1 (MGP_SPRETEiJ_G0032222) #22	Lpl (MGP_SPRETEiJ_G0032221) #23	Ints10 (MGP_SPRETEiJ_G0032220) #24	Csgalnact1 (MGP_SPRETEiJ_G0032219) #25	Sh2d4a (MGP_SPRETEiJ_G0032218) #26	MGP_SPRETEiJ_G0032217 #27	Nat3 (MGP_SPRETEiJ_G0032216) #28	Nat2 (MGP_SPRETEiJ_G0032215) #29	Nat1 (MGP_SPRETEiJ_G0032214) #30	MGP_SPRETEiJ_G0032213 #31	Npy1r (MGP_SPRETEiJ_G0032212) #32	Npy5r (MGP_SPRETEiJ_G0032211) #33	Tktl2 (MGP_SPRETEiJ_G0032210) #34	Tma16 (MGP_SPRETEiJ_G0032209) #35	Marchf1 (MGP_SPRETEiJ_G0032208) #36	MGP_SPRETEiJ_G0032207 #37
Steppe mouse	MODERN SPECIES	3405													ENSMSIG00000002332 #19	Lzts1 (ENSMSIG00000002251) #20	Atp6v1b2 (ENSMSIG00000002208) #21	Slc18a1 (ENSMSIG00000002103) #22	Lpl (ENSMSIG00000031051) #23	Ints10 (ENSMSIG00000031042) #24	Csgalnact1 (ENSMSIG00000031039) #25	Sh2d4a (ENSMSIG00000031038) #26	ENSMSIG00000031035	Psd3 (ENSMSIG00000031001) #27	Nat3 (ENSMSIG00000030998) #28	Nat2 (ENSMSIG00000030997) #29	Nat1 (ENSMSIG00000030994) #30
Mouse	MODERN SPECIES	17	Gmip (ENSMUSG00000036246) #9	Atp13a1 (ENSMUSG00000031862) #10	Zfp866 (ENSMUSG00000043090) #11	Gm20422 (ENSMUSG00000092544)	Zfp963 (ENSMUSG00000092260) #13	Zfp869 (ENSMUSG00000054648) #14	Zfp964 (ENSMUSG00000091764) #15	Zfp868 (ENSMUSG00000060427) #16	Potefam3d (ENSMUSG00000106824)	Potefam3c (ENSMUSG00000107280)	Gm10033 (ENSMUSG00000110444)	D130040H23Rik (ENSMUSG00000079038) #18	Zfp930 (ENSMUSG00000059897) #19	Lzts1 (ENSMUSG00000036306) #20	Atp6v1b2 (ENSMUSG00000006273) #21	Slc18a1 (ENSMUSG00000036330) #22	Lpl (ENSMUSG00000015568) #23	Ints10 (ENSMUSG00000031864) #24	Csgalnact1 (ENSMUSG00000036356) #25	Sh2d4a (ENSMUSG00000053886) #26	Psd3 (ENSMUSG00000030465) #27	Nat3 (ENSMUSG00000056426) #28	Nat2 (ENSMUSG00000051147) #29	Nat1 (ENSMUSG00000025588) #30	Naf1 (ENSMUSG00000014907) #31	Npy1r (ENSMUSG00000036437) #32	Npy5r (ENSMUSG00000044014) #33	Tktl2 (ENSMUSG00000025519) #34	Tma16 (ENSMUSG00000025591) #35	Marchf1 (ENSMUSG00000036469) #36	Smim31 (ENSMUSG00000074300)
Ryukyu mouse	MODERN SPECIES	17	Yjefn3 (MGP_CAROLIEiJ_G0031121)	Cilp2 (MGP_CAROLIEiJ_G0031120)	Pbx4 (MGP_CAROLIEiJ_G0031119) #7	Lpar2 (MGP_CAROLIEiJ_G0031118) #8	Gmip (MGP_CAROLIEiJ_G0031117) #9	Atp13a1 (MGP_CAROLIEiJ_G0031116) #10	Zfp866 (MGP_CAROLIEiJ_G0031115) #11	MGP_CAROLIEiJ_G0031114 #12	Zfp963 (MGP_CAROLIEiJ_G0031113) #13	Zfp869 (MGP_CAROLIEiJ_G0031112) #14	Zfp964 (MGP_CAROLIEiJ_G0031111) #15	Zfp868 (MGP_CAROLIEiJ_G0031110) #16	MGP_CAROLIEiJ_G0031109 #17	Lzts1 (MGP_CAROLIEiJ_G0031108) #20	Atp6v1b2 (MGP_CAROLIEiJ_G0031107) #21	Slc18a1 (MGP_CAROLIEiJ_G0031106) #22	Lpl (MGP_CAROLIEiJ_G0031105) #23	Ints10 (MGP_CAROLIEiJ_G0031104) #24	Csgalnact1 (MGP_CAROLIEiJ_G0031103) #25	Sh2d4a (MGP_CAROLIEiJ_G0031102) #26	MGP_CAROLIEiJ_G0031101 #27	Nat3 (MGP_CAROLIEiJ_G0031100) #28	Nat2 (MGP_CAROLIEiJ_G0031099) #29	Nat1 (MGP_CAROLIEiJ_G0031098) #30	Naf1 (MGP_CAROLIEiJ_G0031097) #31	Npy1r (MGP_CAROLIEiJ_G0031096) #32	Npy5r (MGP_CAROLIEiJ_G0031095) #33	Tktl2 (MGP_CAROLIEiJ_G0031094) #34	Tma16 (MGP_CAROLIEiJ_G0031093) #35	Marchf1 (MGP_CAROLIEiJ_G0031092) #36	MGP_CAROLIEiJ_G0031091