Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00390000014785 #7	ENSGT00940000159316 #8	ENSGT00390000018389 #9	ENSGT00940000153664.A.b.a	ENSGT00940000153902.b #12	ENSGT00530000063529.B #11	ENSGT00940000154103.b #13	ENSGT00950000182925.D.a.b.a.b #14	ENSGT00940000162988	ENSGT00940000162502 #15	ENSGT00950000182925.D.a.b.a.a.b #16	ENSGT00390000004891 #18	ENSGT00940000162603 #19	ENSGT00940000161062 #20	ENSGT00950000183031.B.e.a #21	ENSGT00940000159912 #22	ENSGT00530000063540.a #23	ENSGT00950000182835.c.c #24	ENSGT00940000162763 #25	ENSGT00940000161795 #26	ENSGT00940000155877 #27	ENSGT00940000159438 #28	ENSGT00390000012692 #29	ENSGT00940000160145.b #31	ENSGT00530000063168.a.a.b #33	ENSGT00940000157847 #34	ENSGT00940000156319 #36	ENSGT00940000155170 #37	ENSGT00390000010825.a	ENSGT00940000155614	ENSGT00940000159667
Hystricomorpha_a	ANCESTRAL SPECIES	51	ENSGT00390000014785 #7	ENSGT00940000159316 #8	ENSGT00390000018389 #9	ENSGT00940000153664.A.b.a	ENSGT00530000063529.B #11	ENSGT00940000153902.b #12	ENSGT00940000154103.b #13	ENSGT00950000182925.D.a.b.a.b #14	ENSGT00940000162988	ENSGT00940000162502 #15	ENSGT00950000182925.D.a.b.a.a.b #16	ENSGT00390000004891 #18	ENSGT00940000162603 #19	ENSGT00940000161062 #20	ENSGT00950000183031.B.e.a #21	ENSGT00940000159912 #22	ENSGT00530000063540.a #23	ENSGT00950000182835.c.c #24	ENSGT00940000162763 #25	ENSGT00940000161795 #26	ENSGT00940000155877 #27	ENSGT00940000159438 #28	ENSGT00390000012692 #29	ENSGT00940000160145.b #31	ENSGT00530000063168.a.a.b #33	ENSGT00940000157847 #34	ENSGT00940000156319 #36	ENSGT00940000155170 #37	ENSGT00390000010825.a	ENSGT00940000155614	ENSGT00940000159667
Hystricomorpha_b	ANCESTRAL SPECIES	74	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000014785 #7	ENSGT00940000159316 #8	ENSGT00390000018389 #9	ENSGT00530000063529.B #11	ENSGT00940000153902.b #12	ENSGT00940000154103.b #13	ENSGT00950000182925.D.a.b.a.b #14	ENSGT00940000162988	ENSGT00940000162502 #15	ENSGT00950000182925.D.a.b.a.a.b #16	ENSGT00390000004891 #18	ENSGT00940000162603 #19	ENSGT00940000161062 #20	ENSGT00950000183031.B.e.a #21	ENSGT00940000159912 #22	ENSGT00530000063540.a #23	ENSGT00950000182835.c.c #24	ENSGT00940000162763 #25	ENSGT00940000161795 #26	ENSGT00940000155877 #27	ENSGT00940000159438 #28	ENSGT00390000012692 #29	ENSGT00540000070023.c.a.a	ENSGT00940000160145.b #31	ENSGT00530000063168.a.a.b #33	ENSGT00940000157847 #34	ENSGT00940000156319 #36	ENSGT00940000155170 #37	ENSGT00390000010825.a	ENSGT00940000155614
Long-tailed chinchilla	MODERN SPECIES	182	LAS1L (ENSCLAG00000006717) #7	ZC3H12B (ENSCLAG00000003600) #8	ZC4H2 (ENSCLAG00000002934) #9	ENSCLAG00000007927 #10	AMER1 (ENSCLAG00000017657) #11	ASB12 (ENSCLAG00000006178) #12	ARHGEF9 (ENSCLAG00000004407) #13	SPIN4 (ENSCLAG00000017570) #14	FAAH2 (ENSCLAG00000003768) #15	ENSCLAG00000003441 #16	ENSCLAG00000003312 #17	NBDY (ENSCLAG00000017820) #18	UBQLN2 (ENSCLAG00000017708) #19	KLF8 (ENSCLAG00000005236) #20	RRAGB (ENSCLAG00000003913) #21	ALAS2 (ENSCLAG00000003042) #22	APEX2 (ENSCLAG00000017315) #23	PFKFB1 (ENSCLAG00000009234) #24	ENSCLAG00000007306 #25	MAGED2 (ENSCLAG00000007195) #26	GNL3L (ENSCLAG00000003823) #27	FGD1 (ENSCLAG00000002961) #28	TSR2 (ENSCLAG00000007235) #29	ENSCLAG00000007014 #30	WNK3 (ENSCLAG00000008201) #31	ENSCLAG00000017687 #32	FAM120C (ENSCLAG00000004701) #33	PHF8 (ENSCLAG00000007973) #34	ENSCLAG00000006563 #35	HUWE1 (ENSCLAG00000006361) #36	HSD17B10 (ENSCLAG00000006462) #37
Degu	MODERN SPECIES	398											ENSODEG00000002898	ENSODEG00000002914 #20	RRAGB (ENSODEG00000002951) #21	ENSODEG00000003009	ENSODEG00000003024	ALAS2 (ENSODEG00000003044) #22	ENSODEG00000018880	ENSODEG00000003095 #23	PFKFB1 (ENSODEG00000003122) #24	ENSODEG00000003143	ENSODEG00000000070 #25
Guinea pig	MODERN SPECIES	170										ENSCPOG00000005007	ENSCPOG00000037454 #16	NBDY (ENSCPOG00000038469) #18	UBQLN2 (ENSCPOG00000013496) #19	KLF8 (ENSCPOG00000010165) #20	RRAGB (ENSCPOG00000011266) #21	ALAS2 (ENSCPOG00000007268) #22	APEX2 (ENSCPOG00000007265) #23	PFKFB1 (ENSCPOG00000007261) #24	ENSCPOG00000022846 #25	ENSCPOG00000001051 #26
Naked mole-rat female	MODERN SPECIES	31	AMER1 (ENSHGLG00000020357) #11	ENSHGLG00000043636	ARHGEF9 (ENSHGLG00000002050) #13	SPIN4 (ENSHGLG00000034676) #14	ENSHGLG00000045579	ENSHGLG00000001021 #15	ENSHGLG00000000991 #16	ENSHGLG00000050802 #16	NBDY (ENSHGLG00000049275) #18	ENSHGLG00000000962	UBQLN2 (ENSHGLG00000020145) #19	ENSHGLG00000037038	ENSHGLG00000000922 #20	ENSHGLG00000040831	RRAGB (ENSHGLG00000000313) #21	ALAS2 (ENSHGLG00000000286) #22	ENSHGLG00000000297	APEX2 (ENSHGLG00000042453) #23	Pfkfb1 (ENSHGLG00000000258) #24	Tro (ENSHGLG00000000236) #25	ENSHGLG00000000204 #26	ENSHGLG00000035750	GNL3L (ENSHGLG00000001778) #27	FGD1 (ENSHGLG00000002606) #28	ENSHGLG00000035449 #29	ENSHGLG00000016776	ENSHGLG00000050769	ENSHGLG00000002712	ENSHGLG00000001827	ENSHGLG00000001525	ENSHGLG00000001475