Murinae	ANCESTRAL SPECIES	32						ENSGT00950000182925.D.a.b.a.a.a.b.a.a	ENSGT00940000167111	ENSGT00390000004891	ENSGT00940000163673	ENSGT00940000162603	ENSGT00940000161062	ENSGT00950000183031.B.e.a	ENSGT00940000162993	ENSGT00840000130063	ENSGT00940000163664	ENSGT00940000159912 #22	ENSGT00530000063540.a #21	ENSGT00950000182835.c.c #23	ENSGT00940000162763 #24	ENSGT00940000161795 #25	ENSGT00940000162980	ENSGT00940000155877 #26	ENSGT00940000159438 #27	ENSGT00390000012692 #28	ENSGT00940000160145.b #29	ENSGT00530000063168.a.a.b #30	ENSGT00940000157847.h #31	ENSGT00940000156319 #32	ENSGT00940000155170 #33	ENSGT00390000010825.a #34	ENSGT00940000155614 #35
Mus	ANCESTRAL SPECIES	9	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b #7	ENSGT00940000156128.b #8	ENSGT00940000161570 #9	ENSGT00950000183232	ENSGT00940000159922.b	ENSGT01060000248594.e.a #11	ENSGT00390000018248	ENSGT00940000163925 #12	ENSGT00990000203589.a.b.a.b #13	ENSGT00940000159055 #14	ENSGT01050000244937.a.b.a #17	ENSGT00940000159971 #18	ENSGT00940000160039 #19	ENSGT00510000049526 #20	ENSGT00940000159912 #22	ENSGT00530000063540.a #21	ENSGT00950000182835.c.c #23	ENSGT00940000162763 #24	ENSGT00940000161795 #25	ENSGT00940000155877 #26	ENSGT00940000159438 #27	ENSGT00390000012692 #28	ENSGT00940000160145.b #29	ENSGT00530000063168.a.a.b #30	ENSGT00940000157847.h #31	ENSGT00940000156319 #32	ENSGT00940000155170 #33	ENSGT00390000010825.a #34	ENSGT00940000155614 #35	ENSGT00940000159667 #36
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b #7	ENSGT00940000156128.b #8	ENSGT00940000161570 #9	ENSGT00950000183232	ENSGT00940000159922.b	ENSGT01060000248594.e.a #11	ENSGT00390000018248	ENSGT00940000163925 #12	ENSGT00990000203589.a.b.a.b #13	ENSGT00940000159055 #14	ENSGT01050000244937.a.b.a #17	ENSGT00940000159971 #18	ENSGT00940000160039 #19	ENSGT00510000049526 #20	ENSGT00940000159912 #22	ENSGT00530000063540.a #21	ENSGT00950000182835.c.c #23	ENSGT00940000162763 #24	ENSGT00940000161795 #25	ENSGT00940000155877 #26	ENSGT00940000159438 #27	ENSGT00390000012692 #28	ENSGT00940000160145.b #29	ENSGT00530000063168.a.a.b.g #30	ENSGT00940000157847.h #31	ENSGT00940000156319 #32	ENSGT00940000155170 #33	ENSGT00390000010825.a #34	ENSGT00940000155614 #35	ENSGT00940000159667 #36
Ryukyu mouse	MODERN SPECIES	19	Pak3 (MGP_CAROLIEiJ_G0033470) #7	Capn6 (MGP_CAROLIEiJ_G0033471) #8	Dcx (MGP_CAROLIEiJ_G0033472) #9	MGP_CAROLIEiJ_G0033473 #10	Trpc5 (MGP_CAROLIEiJ_G0033474) #11	Rtl4 (MGP_CAROLIEiJ_G0033475) #12	Lhfpl1 (MGP_CAROLIEiJ_G0033476) #13	Amot (MGP_CAROLIEiJ_G0033477) #14	MGP_CAROLIEiJ_G0033478 #15	MGP_CAROLIEiJ_G0033479 #16	Htr2c (MGP_CAROLIEiJ_G0033480) #17	Il13ra2 (MGP_CAROLIEiJ_G0033481) #18	Lrch2 (MGP_CAROLIEiJ_G0033482) #19	Tmem29 (MGP_CAROLIEiJ_G0033483) #20	Apex2 (MGP_CAROLIEiJ_G0033484) #21	Alas2 (MGP_CAROLIEiJ_G0033485) #22	Pfkfb1 (MGP_CAROLIEiJ_G0033486) #23	Tro (MGP_CAROLIEiJ_G0033487) #24	Maged2 (MGP_CAROLIEiJ_G0033488) #25	Gnl3l (MGP_CAROLIEiJ_G0033489) #26	Fgd1 (MGP_CAROLIEiJ_G0033490) #27	Tsr2 (MGP_CAROLIEiJ_G0033491) #28	Wnk3 (MGP_CAROLIEiJ_G0033492) #29	Fam120c (MGP_CAROLIEiJ_G0033493) #30	Phf8 (MGP_CAROLIEiJ_G0033494) #31	Huwe1 (MGP_CAROLIEiJ_G0033495) #32	Hsd17b10 (MGP_CAROLIEiJ_G0033496) #33	Ribc1 (MGP_CAROLIEiJ_G0033497) #34	Smc1a (MGP_CAROLIEiJ_G0033498) #35	Iqsec2 (MGP_CAROLIEiJ_G0033499) #36	Kdm5c (MGP_CAROLIEiJ_G0033500) #37
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b #7	ENSGT00940000156128.b #8	ENSGT00940000161570 #9	ENSGT00950000183232	ENSGT00940000159922.b	ENSGT01060000248594.e.a #11	ENSGT00390000018248	ENSGT00940000163925 #12	ENSGT00990000203589.a.b.a.b #13	ENSGT00940000159055 #14	ENSGT01050000244937.a.b.a #17	ENSGT00940000159971 #18	ENSGT00940000160039 #19	ENSGT00510000049526 #20	ENSGT00940000159912 #22	ENSGT00530000063540.a #21	ENSGT00950000182835.c.c #23	ENSGT00940000162763 #24	ENSGT00940000161795 #25	ENSGT00940000155877 #26	ENSGT00940000159438 #27	ENSGT00390000012692 #28	ENSGT00940000160145.b #29	ENSGT00530000063168.a.a.b.g #30	ENSGT00940000157847.h #31	ENSGT00940000156319 #32	ENSGT00940000155170 #33	ENSGT00390000010825.a #34	ENSGT00940000155614 #35	ENSGT00940000159667 #36
Mus_C	ANCESTRAL SPECIES	22	ENSGT00390000010397.a	ENSGT00730000110943.A.d	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b #7	ENSGT00940000156128.b #8	ENSGT00940000161570 #9	ENSGT00510000047493.e #10	ENSGT01060000248594.e.a #11	ENSGT00940000163925 #12	ENSGT00990000203589.a.b.a.b #13	ENSGT00940000159055 #14	ENSGT01050000244937.a.b.a #17	ENSGT00940000159971 #18	ENSGT00940000160039 #19	ENSGT00510000049526 #20	ENSGT00940000159912 #22	ENSGT00530000063540.a #21	ENSGT00950000182835.c.c #23	ENSGT00940000162763 #24	ENSGT00940000161795 #25	ENSGT00940000162980	ENSGT00940000155877 #26	ENSGT00940000159438 #27	ENSGT00390000012692 #28	ENSGT00940000160145.b #29	ENSGT00530000063168.a.a.b.g #30	ENSGT00940000157847.h #31	ENSGT00940000156319 #32	ENSGT00940000155170 #33	ENSGT00390000010825.a #34	ENSGT00940000155614 #35
spretus	MODERN SPECIES	19	Chrdl1 (MGP_SPRETEiJ_G0034640)	Pak3 (MGP_SPRETEiJ_G0034641) #7	Capn6 (MGP_SPRETEiJ_G0034642) #8	Dcx (MGP_SPRETEiJ_G0034643) #9	MGP_SPRETEiJ_G0034644 #10	Trpc5 (MGP_SPRETEiJ_G0034645) #11	MGP_SPRETEiJ_G0034646	Rtl4 (MGP_SPRETEiJ_G0034647) #12	Lhfpl1 (MGP_SPRETEiJ_G0034648) #13	Amot (MGP_SPRETEiJ_G0034649) #14	Htr2c (MGP_SPRETEiJ_G0034650) #17	Il13ra2 (MGP_SPRETEiJ_G0034651) #18	Lrch2 (MGP_SPRETEiJ_G0034652) #19	Tmem29 (MGP_SPRETEiJ_G0034653) #20	Apex2 (MGP_SPRETEiJ_G0034654) #21	Alas2 (MGP_SPRETEiJ_G0034655) #22	Pfkfb1 (MGP_SPRETEiJ_G0034656) #23	Tro (MGP_SPRETEiJ_G0034657) #24	Maged2 (MGP_SPRETEiJ_G0034658) #25	Gnl3l (MGP_SPRETEiJ_G0034659) #26	Fgd1 (MGP_SPRETEiJ_G0034660) #27	Tsr2 (MGP_SPRETEiJ_G0034661) #28	Wnk3 (MGP_SPRETEiJ_G0034662) #29	Fam120c (MGP_SPRETEiJ_G0034663) #30	Phf8 (MGP_SPRETEiJ_G0034664) #31	Huwe1 (MGP_SPRETEiJ_G0034665) #32	Hsd17b10 (MGP_SPRETEiJ_G0034666) #33	Ribc1 (MGP_SPRETEiJ_G0034667) #34	Smc1a (MGP_SPRETEiJ_G0034668) #35	Iqsec2 (MGP_SPRETEiJ_G0034669) #36	Kdm5c (MGP_SPRETEiJ_G0034670) #37
Mouse	MODERN SPECIES	37	Lrch2 (ENSMUSG00000031290) #19	Gm15128 (ENSMUSG00000095872)	Gm15080 (ENSMUSG00000072931)	Gm15107 (ENSMUSG00000072930)	Gm15114 (ENSMUSG00000079395)	Gm15127 (ENSMUSG00000096834)	Luzp4 (ENSMUSG00000079387)	Ott (ENSMUSG00000094885)	Gm15093 (ENSMUSG00000094941)	Gm15085 (ENSMUSG00000095621)	Gm10439 (ENSMUSG00000072923)	Gm15097 (ENSMUSG00000094378)	Gm15091 (ENSMUSG00000095082)	Tmem29 (ENSMUSG00000041353) #20	Apex2 (ENSMUSG00000025269) #21	Alas2 (ENSMUSG00000025270) #22	Pfkfb1 (ENSMUSG00000025271) #23	Tro (ENSMUSG00000025272) #24	Maged2 (ENSMUSG00000025268) #25	Gnl3l (ENSMUSG00000025266) #26	Fgd1 (ENSMUSG00000025265) #27	Tsr2 (ENSMUSG00000025264) #28	Wnk3 (ENSMUSG00000041245) #29	Fam120c (ENSMUSG00000025262) #30	Phf8 (ENSMUSG00000041229) #31	Huwe1 (ENSMUSG00000025261) #32	Hsd17b10 (ENSMUSG00000025260) #33	Ribc1 (ENSMUSG00000025257) #34	Smc1a (ENSMUSG00000041133) #35	Iqsec2 (ENSMUSG00000041115) #36	Kdm5c (ENSMUSG00000025332) #37
Shrew mouse	MODERN SPECIES	23	Chrdl1 (MGP_PahariEiJ_G0032009)	Pak3 (MGP_PahariEiJ_G0032010) #7	Capn6 (MGP_PahariEiJ_G0032011) #8	Dcx (MGP_PahariEiJ_G0032012) #9	MGP_PahariEiJ_G0032013	MGP_PahariEiJ_G0032014 #10	Trpc5 (MGP_PahariEiJ_G0032015) #11	Rtl4 (MGP_PahariEiJ_G0032016) #12	Lhfpl1 (MGP_PahariEiJ_G0032017) #13	Amot (MGP_PahariEiJ_G0032018) #14	Htr2c (MGP_PahariEiJ_G0032019) #17	Il13ra2 (MGP_PahariEiJ_G0032020) #18	Lrch2 (MGP_PahariEiJ_G0032021) #19	Tmem29 (MGP_PahariEiJ_G0032022) #20	Apex2 (MGP_PahariEiJ_G0032023) #21	Alas2 (MGP_PahariEiJ_G0032024) #22	Pfkfb1 (MGP_PahariEiJ_G0032025) #23	MGP_PahariEiJ_G0032026 #24	Maged2 (MGP_PahariEiJ_G0032027) #25	Gnl3l (MGP_PahariEiJ_G0032028) #26	Fgd1 (MGP_PahariEiJ_G0032029) #27	Tsr2 (MGP_PahariEiJ_G0032030) #28	Wnk3 (MGP_PahariEiJ_G0032031) #29	Fam120c (MGP_PahariEiJ_G0032032) #30	Phf8 (MGP_PahariEiJ_G0032033) #31	Huwe1 (MGP_PahariEiJ_G0032034) #32	Hsd17b10 (MGP_PahariEiJ_G0032035) #33	Ribc1 (MGP_PahariEiJ_G0032036) #34	Smc1a (MGP_PahariEiJ_G0032037) #35	Iqsec2 (MGP_PahariEiJ_G0032038) #36	Kdm5c (MGP_PahariEiJ_G0032039) #37
Rat	MODERN SPECIES	46	ENSRNOG00000068286	Spin2a (ENSRNOG00000031286)	LOC102551133 (ENSRNOG00000063966)	LOC681355 (ENSRNOG00000069375)	Ubqln2 (ENSRNOG00000003099)	Klf8 (ENSRNOG00000065004)	Rpl35-ps8 (ENSRNOG00000003158)	RragB (ENSRNOG00000062421)	Foxr2 (ENSRNOG00000030619)	Mageh1 (ENSRNOG00000003178)	Usp51 (ENSRNOG00000021434)	LOC102546830 (ENSRNOG00000059783)	Rpgr-ps1 (ENSRNOG00000062329)	ENSRNOG00000070642	Fam104b (ENSRNOG00000049908)	Alas2 (ENSRNOG00000000167) #22	Apex2 (ENSRNOG00000000166) #21	Pfkfb1 (ENSRNOG00000000165) #23	Tro (ENSRNOG00000067844) #24	AABR07037520.1 (ENSRNOG00000047491)	Maged2 (ENSRNOG00000002449) #25	Itih6-ps1 (ENSRNOG00000069211)	AC115420.1 (ENSRNOG00000040249)	Gnl3l (ENSRNOG00000002509) #26	Fgd1 (ENSRNOG00000038970) #27	Tsr2 (ENSRNOG00000064917) #28	Wnk3 (ENSRNOG00000002537) #29	AABR07037412.1 (ENSRNOG00000030999)	FAM120C (ENSRNOG00000062231) #30	LOC100362724 (ENSRNOG00000038965)	Phf8 (ENSRNOG00000002708) #31