Mus	ANCESTRAL SPECIES	20	ENSGT00390000005672.a.b #8	ENSGT00950000183173.P #9	ENSGT00940000155538 #10	ENSGT00390000008932.c.a.b #11	ENSGT00390000008932.c.b #12	ENSGT00390000008932.c.a.a #13	ENSGT00940000158874 #14	ENSGT01030000234646.B.a.a.a.b #15	ENSGT00940000156032 #16	ENSGT00940000159344 #17	ENSGT00940000162732 #18	ENSGT00940000157683 #19	ENSGT00910000147039	ENSGT00940000159188 #20	ENSGT00390000010029 #21	ENSGT00390000002457 #22	ENSGT00390000001994 #23	ENSGT00940000155000 #24	ENSGT00940000161647 #25	ENSGT00390000015038 #26	ENSGT00390000008029 #27	ENSGT00390000003051 #29	ENSGT00950000183046.b #30	ENSGT00390000005530.a.b #31	ENSGT00950000182883.a.b.a #32	ENSGT00940000154268.f #33	ENSGT00940000156923 #34	ENSGT00940000155427 #35	ENSGT00940000158360 #36	ENSGT00940000163868 #37	ENSGT01100000263477.F
Mus_A	ANCESTRAL SPECIES	7	ENSGT00390000005672.a.b #8	ENSGT00950000183173.P #9	ENSGT00940000155538 #10	ENSGT00390000008932.c.a.b #11	ENSGT00390000008932.c.b #12	ENSGT00390000008932.c.a.a #13	ENSGT00940000158874 #14	ENSGT01030000234646.B.a.a.a.b #15	ENSGT00940000156032 #16	ENSGT00940000159344 #17	ENSGT00940000162732 #18	ENSGT00940000157683 #19	ENSGT00910000147039	ENSGT00940000159188 #20	ENSGT00390000010029 #21	ENSGT00390000002457 #22	ENSGT00390000001994 #23	ENSGT00940000155000 #24	ENSGT00940000161647 #25	ENSGT00390000015038 #26	ENSGT00390000008029 #27	ENSGT00390000003051.c #28	ENSGT00950000183046.b.n #30	ENSGT00390000005530.a.b #31	ENSGT00950000182883.a.b.a #32	ENSGT00940000154268.f #33	ENSGT00940000156923 #34	ENSGT00940000155427 #35	ENSGT00940000158360 #36	ENSGT00940000163868 #37	ENSGT01100000263477.F
Ryukyu mouse	MODERN SPECIES	15	Casd1 (MGP_CAROLIEiJ_G0028076) #7	Sgce (MGP_CAROLIEiJ_G0028077) #8	MGP_CAROLIEiJ_G0028078 #9	Ppp1r9a (MGP_CAROLIEiJ_G0028079) #10	Pon1 (MGP_CAROLIEiJ_G0028080) #11	Pon3 (MGP_CAROLIEiJ_G0028081) #12	Pon2 (MGP_CAROLIEiJ_G0028082) #13	Asb4 (MGP_CAROLIEiJ_G0028083) #14	Pdk4 (MGP_CAROLIEiJ_G0028084) #15	Dync1i1 (MGP_CAROLIEiJ_G0028085) #16	MGP_CAROLIEiJ_G0028086 #17	Sem1 (MGP_CAROLIEiJ_G0028087) #18	Dlx6 (MGP_CAROLIEiJ_G0028088) #19	Dlx5 (MGP_CAROLIEiJ_G0028089) #20	Sdhaf3 (MGP_CAROLIEiJ_G0028090) #21	Tac1 (MGP_CAROLIEiJ_G0028091) #22	Asns (MGP_CAROLIEiJ_G0028092) #23	C1galt1 (MGP_CAROLIEiJ_G0028093) #24	Col28a1 (MGP_CAROLIEiJ_G0028094) #25	Mios (MGP_CAROLIEiJ_G0028095) #26	Rpa3 (MGP_CAROLIEiJ_G0028096) #27	Umad1 (MGP_CAROLIEiJ_G0028097) #28	MGP_CAROLIEiJ_G0028098 #29	Glcci1 (MGP_CAROLIEiJ_G0028099) #30	Ica1 (MGP_CAROLIEiJ_G0028100) #31	Nxph1 (MGP_CAROLIEiJ_G0028101) #32	Ndufa4 (MGP_CAROLIEiJ_G0028102) #33	MGP_CAROLIEiJ_G0028103 #34	MGP_CAROLIEiJ_G0028104 #35	Tmem106b (MGP_CAROLIEiJ_G0028105) #36	Vwde (MGP_CAROLIEiJ_G0028106) #37
Mus_B	ANCESTRAL SPECIES	20	ENSGT00390000005672.a.b #8	ENSGT00950000183173.P #9	ENSGT00940000155538 #10	ENSGT00390000008932.c.a.b #11	ENSGT00390000008932.c.b #12	ENSGT00390000008932.c.a.a #13	ENSGT00940000158874 #14	ENSGT01030000234646.B.a.a.a.b #15	ENSGT00940000156032 #16	ENSGT00940000159344 #17	ENSGT00940000162732 #18	ENSGT00940000157683 #19	ENSGT00910000147039	ENSGT00940000159188 #20	ENSGT00390000010029 #21	ENSGT00390000002457 #22	ENSGT00390000001994 #23	ENSGT00940000155000 #24	ENSGT00940000161647 #25	ENSGT00390000015038 #26	ENSGT00390000008029.k #27	ENSGT00390000003051.c #28	ENSGT00950000183046.b.n #30	ENSGT00390000005530.a.b #31	ENSGT00950000182883.a.b.a #32	ENSGT00940000154268.f #33	ENSGT00940000156923 #34	ENSGT00940000155427 #35	ENSGT00940000158360 #36	ENSGT00940000163868 #37	ENSGT01100000263477.F
Mouse	MODERN SPECIES	15	Casd1 (ENSMUSG00000015189) #7	Sgce (ENSMUSG00000004631) #8	Peg10 (ENSMUSG00000092035) #9	Ppp1r9a (ENSMUSG00000032827) #10	Pon1 (ENSMUSG00000002588) #11	Pon3 (ENSMUSG00000029759) #12	Pon2 (ENSMUSG00000032667) #13	Asb4 (ENSMUSG00000042607) #14	Pdk4 (ENSMUSG00000019577) #15	Dync1i1 (ENSMUSG00000029757) #16	Slc25a13 (ENSMUSG00000015112) #17	Sem1 (ENSMUSG00000042541) #18	Dlx6 (ENSMUSG00000029754) #19	Dlx5 (ENSMUSG00000029755) #20	Sdhaf3 (ENSMUSG00000042505) #21	Tac1 (ENSMUSG00000061762) #22	Asns (ENSMUSG00000029752) #23	C1galt1 (ENSMUSG00000042460) #24	Col28a1 (ENSMUSG00000068794) #25	Mios (ENSMUSG00000042447) #26	Rpa3 (ENSMUSG00000012483) #27	Umad1 (ENSMUSG00000089862) #28	Glcci1 (ENSMUSG00000029638) #30	Ica1 (ENSMUSG00000062995) #31	Nxph1 (ENSMUSG00000046178) #32	Ndufa4 (ENSMUSG00000029632) #33	Phf14 (ENSMUSG00000029629) #34	Thsd7a (ENSMUSG00000032625) #35	Tmem106b (ENSMUSG00000029571) #36	Vwde (ENSMUSG00000079679) #37	Tmem168 (ENSMUSG00000029569)
Mus_C	ANCESTRAL SPECIES	19	ENSGT00390000004037 #7	ENSGT00390000005672.a.b #8	ENSGT00940000155538 #10	ENSGT00390000008932.c.a.b #11	ENSGT00390000008932.c.b #12	ENSGT00390000008932.c.a.a #13	ENSGT00940000158874 #14	ENSGT01030000234646.B.a.a.a.b #15	ENSGT00940000156032 #16	ENSGT00940000159344 #17	ENSGT00940000162732 #18	ENSGT00940000157683 #19	ENSGT00910000147039	ENSGT00940000159188 #20	ENSGT00390000010029 #21	ENSGT00390000002457 #22	ENSGT00390000001994 #23	ENSGT00940000155000 #24	ENSGT00940000161647 #25	ENSGT00390000015038 #26	ENSGT00390000008029.k #27	ENSGT00390000003051.c #28	ENSGT00950000183046.b.n #30	ENSGT00390000005530.a.b #31	ENSGT00950000182883.a.b.a #32	ENSGT00940000154268.f #33	ENSGT00940000156923 #34	ENSGT00940000155427 #35	ENSGT00940000158360 #36	ENSGT00940000163868 #37	ENSGT01100000263477.F
Steppe mouse	MODERN SPECIES	2245																Tac1 (ENSMSIG00000009014) #22	Asns (ENSMSIG00000008999) #23
spretus	MODERN SPECIES	15	Casd1 (MGP_SPRETEiJ_G0029076) #7	Sgce (MGP_SPRETEiJ_G0029077) #8	MGP_SPRETEiJ_G0029078 ##9	Ppp1r9a (MGP_SPRETEiJ_G0029079) #10	Pon1 (MGP_SPRETEiJ_G0029080) #11	MGP_SPRETEiJ_G0029081 #12	Pon2 (MGP_SPRETEiJ_G0029082) #13	Asb4 (MGP_SPRETEiJ_G0029083) #14	Pdk4 (MGP_SPRETEiJ_G0029084) #15	Dync1i1 (MGP_SPRETEiJ_G0029085) #16	Slc25a13 (MGP_SPRETEiJ_G0029086) #17	Sem1 (MGP_SPRETEiJ_G0029087) #18	Dlx6 (MGP_SPRETEiJ_G0029088) #19	Dlx5 (MGP_SPRETEiJ_G0029089) #20	Sdhaf3 (MGP_SPRETEiJ_G0029090) #21	Tac1 (MGP_SPRETEiJ_G0029091) #22	Asns (MGP_SPRETEiJ_G0029092) #23	C1galt1 (MGP_SPRETEiJ_G0029093) #24	Col28a1 (MGP_SPRETEiJ_G0029094) #25	Mios (MGP_SPRETEiJ_G0029095) #26	Rpa3 (MGP_SPRETEiJ_G0029096) #27	Umad1 (MGP_SPRETEiJ_G0029097) #28	MGP_SPRETEiJ_G0029098 #29	Glcci1 (MGP_SPRETEiJ_G0029099) #30	Ica1 (MGP_SPRETEiJ_G0029100) #31	Nxph1 (MGP_SPRETEiJ_G0029101) #32	Ndufa4 (MGP_SPRETEiJ_G0029102) #33	MGP_SPRETEiJ_G0029103 #34	Thsd7a (MGP_SPRETEiJ_G0029104) #35	Tmem106b (MGP_SPRETEiJ_G0029105) #36	Vwde (MGP_SPRETEiJ_G0029106) #37
Shrew mouse	MODERN SPECIES	11	Col1a2 (MGP_PahariEiJ_G0021831)	Casd1 (MGP_PahariEiJ_G0021832) #7	Sgce (MGP_PahariEiJ_G0021833) #8	MGP_PahariEiJ_G0021834 ##9	Ppp1r9a (MGP_PahariEiJ_G0021835) #10	Pon1 (MGP_PahariEiJ_G0021836) #11	Pon3 (MGP_PahariEiJ_G0021837) #12	Pon2 (MGP_PahariEiJ_G0021838) #13	Asb4 (MGP_PahariEiJ_G0021839) #14	Pdk4 (MGP_PahariEiJ_G0021840) #15	Dync1i1 (MGP_PahariEiJ_G0021841) #16	Slc25a13 (MGP_PahariEiJ_G0021842) #17	Sem1 (MGP_PahariEiJ_G0021843) #18	Dlx6 (MGP_PahariEiJ_G0021844) #19	Dlx5 (MGP_PahariEiJ_G0021845) #20	Tac1 (MGP_PahariEiJ_G0021847) #22	Asns (MGP_PahariEiJ_G0021848) #23	C1galt1 (MGP_PahariEiJ_G0021849) #24	Col28a1 (MGP_PahariEiJ_G0021850) #25	Mios (MGP_PahariEiJ_G0021851) #26	Rpa3 (MGP_PahariEiJ_G0021852) #27	MGP_PahariEiJ_G0021853 #29	MGP_PahariEiJ_G0021854 #29	Glcci1 (MGP_PahariEiJ_G0021855) #30	Ica1 (MGP_PahariEiJ_G0021856) #31	Nxph1 (MGP_PahariEiJ_G0021857) #32	Ndufa4 (MGP_PahariEiJ_G0021858) #33	MGP_PahariEiJ_G0021859 #34	Thsd7a (MGP_PahariEiJ_G0021860) #35	Tmem106b (MGP_PahariEiJ_G0021861) #36	Vwde (MGP_PahariEiJ_G0021862) #37