Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT00390000014718 #19	ENSGT01080000257410.C #20	ENSGT00960000192285 #21	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.o.b #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000161589 #36	ENSGT00940000154543.a
Glires	ANCESTRAL SPECIES	17	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT00390000014718 #19	ENSGT01080000257410.C #20	ENSGT00960000192285 #21	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.o.b #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000161589 #36	ENSGT00940000154543.a
Rodentia	ANCESTRAL SPECIES	18	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT00390000014718 #19	ENSGT01080000257410.C #20	ENSGT00960000192285 #21	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.o.b #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000161589 #36	ENSGT00940000154543.a
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT00390000014718 #19	ENSGT01080000257410.C #20	ENSGT00960000192285 #21	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.o.b #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000161589 #36	ENSGT00940000154543.a
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT00390000014718 #19	ENSGT01080000257410.C #20	ENSGT00960000192285 #21	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.o.b #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000161589 #36	ENSGT00940000154543.a
Muroidea	ANCESTRAL SPECIES	7	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT00390000014718 #19	ENSGT01080000257410.C #20	ENSGT00960000192285 #21	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.o.b #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000161589 #36	ENSGT00940000154543.a
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT00390000014718 #19	ENSGT01080000257410.C #20	ENSGT00960000192285 #21	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.o.b #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000161589 #36	ENSGT00940000154543.a
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT00390000014718 #19	ENSGT01080000257410.C #20	ENSGT00960000192285 #21	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.o.b #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000161589 #36	ENSGT00940000154543.a
Rat	MODERN SPECIES	13	Nkain4 (ENSRNOG00000031834) #7	Birc7 (ENSRNOG00000043311) #8	Ythdf1 (ENSRNOG00000027015) #9	Bhlhe23 (ENSRNOG00000010312) #10	Slc17a9 (ENSRNOG00000010275) #11	Gid8 (ENSRNOG00000065606) #12	Dido1 (ENSRNOG00000009936) #13	Tcfl5 (ENSRNOG00000061199) #14	Col9a3 (ENSRNOG00000009531) #15	Ogfr (ENSRNOG00000009355) #16	Mrgbp (ENSRNOG00000059891) #17	Ntsr1 (ENSRNOG00000028708) #18	ENSRNOG00000064180 #19	Slco4a1 (ENSRNOG00000053430) #20	AC115322.1 (ENSRNOG00000054405) #21	Gata5 (ENSRNOG00000058983) #22	Rbbp8nl (ENSRNOG00000057245) #23	Cables2 (ENSRNOG00000051420) #24	Rps21 (ENSRNOG00000060449) #25	Lama5 (ENSRNOG00000053691) #26	Adrm1 (ENSRNOG00000055984) #27	Osbpl2 (ENSRNOG00000057756) #28	Hrh3 (ENSRNOG00000061153) #29	Mtg2 (ENSRNOG00000059919) #30	Ss18l1 (ENSRNOG00000060010) #31	Psma7 (ENSRNOG00000056853) #32	Lsm14b (ENSRNOG00000054557) #33	Taf4 (ENSRNOG00000054497) #34	Cdh4 (ENSRNOG00000052405) #35	Cdh26 (ENSRNOG00000053332) #36	Ppp1r3d (ENSRNOG00000053869) #37
Mus	ANCESTRAL SPECIES	1	ENSGT00890000139515	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT01080000257410.C #20	ENSGT00960000192285 #21	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.o.b #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000161589 #36	ENSGT00940000154543.a
Mus_A	ANCESTRAL SPECIES		ENSGT00890000139515	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT01080000257410.C #20	ENSGT00960000192285 #21	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.o.b #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000161589 #36	ENSGT00940000154543.a
Mus_B	ANCESTRAL SPECIES	1	ENSGT00890000139515	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT01080000257410.C #20	ENSGT00960000192285 #21	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.o.b #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000161589 #36	ENSGT00940000154543.a
Mouse	MODERN SPECIES	11	Col20a1 (ENSMUSG00000016356)	Arfgap1 (ENSMUSG00000027575)	Nkain4 (ENSMUSG00000027574) #7	Birc7 (ENSMUSG00000038840) #8	Ythdf1 (ENSMUSG00000038848) #9	Bhlhe23 (ENSMUSG00000045493) #10	Slc17a9 (ENSMUSG00000023393) #11	Gid8 (ENSMUSG00000027573) #12	Dido1 (ENSMUSG00000038914) #13	Tcfl5 (ENSMUSG00000038932) #14	Col9a3 (ENSMUSG00000027570) #15	Ogfr (ENSMUSG00000049401) #16	Mrgbp (ENSMUSG00000027569) #17	Ntsr1 (ENSMUSG00000027568) #18	Slco4a1 (ENSMUSG00000038963) #20	Gata5 (ENSMUSG00000015627) #22	Rbbp8nl (ENSMUSG00000038980) #23	Cables2 (ENSMUSG00000038990) #24	Rps21 (ENSMUSG00000039001) #25	Lama5 (ENSMUSG00000015647) #26	Adrm1 (ENSMUSG00000039041) #27	Osbpl2 (ENSMUSG00000039050) #28	Hrh3 (ENSMUSG00000039059) #29	Mtg2 (ENSMUSG00000039069) #30	Ss18l1 (ENSMUSG00000039086) #31	Psma7 (ENSMUSG00000027566) #32	Lsm14b (ENSMUSG00000039108) #33	Taf4 (ENSMUSG00000039117) #34	Cdh4 (ENSMUSG00000000305) #35	Cdh26 (ENSMUSG00000039155) #36	Fam217b (ENSMUSG00000070476)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00890000139515	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT01080000257410.C #20	ENSGT00960000192285 #21	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.o.b #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000161589 #36	ENSGT00940000154543.a
Steppe mouse	MODERN SPECIES	3150						Slc17a9 (ENSMSIG00000017823) #11	Gid8 (ENSMSIG00000017793) #12	Dido1 (ENSMSIG00000017715) #13	ENSMSIG00000017707 #14	Col9a3 (ENSMSIG00000017585) #15	Ogfr (ENSMSIG00000017554) #16	Mrgbp (ENSMSIG00000017522) #17	Ntsr1 (ENSMSIG00000017500) #18	Slco4a1 (ENSMSIG00000017476) #20	ENSMSIG00000017437 #21	Gata5 (ENSMSIG00000017417) #22	Rbbp8nl (ENSMSIG00000017371) #23	Cables2 (ENSMSIG00000017347) #24	ENSMSIG00000017324 #25	ENSMSIG00000016398 #28	ENSMSIG00000016249 #29	ENSMSIG00000016190 #30	ENSMSIG00000016142 #31	Psma7 (ENSMSIG00000016080) #32	ENSMSIG00000016029 #33	ENSMSIG00000015731 #34	ENSMSIG00000015713	Cdh4 (ENSMSIG00000015601) #35	ENSMSIG00000015591	Cdh26 (ENSMSIG00000015463) #36	Fam217b (ENSMSIG00000015440)
spretus	MODERN SPECIES	11	Col20a1 (MGP_SPRETEiJ_G0025719)	Arfgap1 (MGP_SPRETEiJ_G0025718)	Nkain4 (MGP_SPRETEiJ_G0025717) #7	Birc7 (MGP_SPRETEiJ_G0025716) #8	Ythdf1 (MGP_SPRETEiJ_G0025715) #9	Bhlhe23 (MGP_SPRETEiJ_G0025714) #10	Slc17a9 (MGP_SPRETEiJ_G0025713) #11	Gid8 (MGP_SPRETEiJ_G0025712) #12	Dido1 (MGP_SPRETEiJ_G0025711) #13	Tcfl5 (MGP_SPRETEiJ_G0025710) #14	Col9a3 (MGP_SPRETEiJ_G0025709) #15	Ogfr (MGP_SPRETEiJ_G0025708) #16	Mrgbp (MGP_SPRETEiJ_G0025707) #17	Ntsr1 (MGP_SPRETEiJ_G0025706) #18	Slco4a1 (MGP_SPRETEiJ_G0025705) #20	Gata5 (MGP_SPRETEiJ_G0025704) #22	Rbbp8nl (MGP_SPRETEiJ_G0025703) #23	Cables2 (MGP_SPRETEiJ_G0025702) #24	Rps21 (MGP_SPRETEiJ_G0025701) #25	Lama5 (MGP_SPRETEiJ_G0025700) #26	MGP_SPRETEiJ_G0025699 #27	Osbpl2 (MGP_SPRETEiJ_G0025698) #28	Hrh3 (MGP_SPRETEiJ_G0025697) #29	MGP_SPRETEiJ_G0025696 #30	Ss18l1 (MGP_SPRETEiJ_G0025695) #31	Psma7 (MGP_SPRETEiJ_G0025694) #32	Lsm14b (MGP_SPRETEiJ_G0025693) #33	MGP_SPRETEiJ_G0025692 #34	Cdh4 (MGP_SPRETEiJ_G0025691) #35	Cdh26 (MGP_SPRETEiJ_G0025690) #36	Fam217b (MGP_SPRETEiJ_G0025689)
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0024794	Arfgap1 (MGP_CAROLIEiJ_G0024793)	Nkain4 (MGP_CAROLIEiJ_G0024792) #7	Birc7 (MGP_CAROLIEiJ_G0024791) #8	Ythdf1 (MGP_CAROLIEiJ_G0024790) #9	Bhlhe23 (MGP_CAROLIEiJ_G0024789) #10	Slc17a9 (MGP_CAROLIEiJ_G0024788) #11	Gid8 (MGP_CAROLIEiJ_G0024787) #12	MGP_CAROLIEiJ_G0024786 #13	Tcfl5 (MGP_CAROLIEiJ_G0024785) #14	Col9a3 (MGP_CAROLIEiJ_G0024784) #15	Ogfr (MGP_CAROLIEiJ_G0024783) #16	Mrgbp (MGP_CAROLIEiJ_G0024782) #17	Ntsr1 (MGP_CAROLIEiJ_G0024781) #18	MGP_CAROLIEiJ_G0024780 #20	Gata5 (MGP_CAROLIEiJ_G0024779) #22	MGP_CAROLIEiJ_G0024778 #24	MGP_CAROLIEiJ_G0024777 #26	MGP_CAROLIEiJ_G0024776 #27	MGP_CAROLIEiJ_G0024775 #28	Hrh3 (MGP_CAROLIEiJ_G0024774) #29	MGP_CAROLIEiJ_G0024773 #30	Ss18l1 (MGP_CAROLIEiJ_G0024772) #31	Psma7 (MGP_CAROLIEiJ_G0024771) #32	Lsm14b (MGP_CAROLIEiJ_G0024770) #33	MGP_CAROLIEiJ_G0024769 #34	Cdh4 (MGP_CAROLIEiJ_G0024768) #35	Ppp1r3d (MGP_CAROLIEiJ_G0024767) #37	Phactr3 (MGP_CAROLIEiJ_G0024765)	Edn3 (MGP_CAROLIEiJ_G0024764)	Zfp831 (MGP_CAROLIEiJ_G0024763)
Shrew mouse	MODERN SPECIES	16	Col20a1 (MGP_PahariEiJ_G0026241)	Arfgap1 (MGP_PahariEiJ_G0026240)	Nkain4 (MGP_PahariEiJ_G0026239) #7	Birc7 (MGP_PahariEiJ_G0026238) #8	Ythdf1 (MGP_PahariEiJ_G0026237) #9	Bhlhe23 (MGP_PahariEiJ_G0026236) #10	Slc17a9 (MGP_PahariEiJ_G0026235) #11	Gid8 (MGP_PahariEiJ_G0026234) #12	Dido1 (MGP_PahariEiJ_G0026233) #13	Tcfl5 (MGP_PahariEiJ_G0026232) #14	Col9a3 (MGP_PahariEiJ_G0026231) #15	Ogfr (MGP_PahariEiJ_G0026230) #16	Mrgbp (MGP_PahariEiJ_G0026229) #17	Ntsr1 (MGP_PahariEiJ_G0026228) #18	Slco4a1 (MGP_PahariEiJ_G0026227) #20	Gata5 (MGP_PahariEiJ_G0026226) #22	Rbbp8nl (MGP_PahariEiJ_G0026225) #23	Cables2 (MGP_PahariEiJ_G0026224) #24	Rps21 (MGP_PahariEiJ_G0026223) #25	Lama5 (MGP_PahariEiJ_G0026222) #26	MGP_PahariEiJ_G0026221 #27	MGP_PahariEiJ_G0026220 #27	Osbpl2 (MGP_PahariEiJ_G0026219) #28	Hrh3 (MGP_PahariEiJ_G0026218) #29	MGP_PahariEiJ_G0026217 #30	Ss18l1 (MGP_PahariEiJ_G0026216) #31	Psma7 (MGP_PahariEiJ_G0026215) #32	Lsm14b (MGP_PahariEiJ_G0026214) #33	MGP_PahariEiJ_G0026213 #34	Cdh4 (MGP_PahariEiJ_G0026212) #35	Cdh26 (MGP_PahariEiJ_G0026211) #36
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00890000139515	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT00390000014718 #19	ENSGT01080000257410.C #20	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.o.b.e.a.b #25	ENSGT00390000017515.o.b.f #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000161589 #36
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000153769.G	ENSGT00890000139515	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT01080000257410.C #20	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000161589 #36	ENSGT00940000154543.a	ENSGT00940000161921 #37	ENSGT00530000063859.b
Golden Hamster	MODERN SPECIES	664	Chrna4 (ENSMAUG00000001465)	ENSMAUG00000021616	Arfgap1 (ENSMAUG00000015799)	Nkain4 (ENSMAUG00000011539) #7	Birc7 (ENSMAUG00000019324) #8	Ythdf1 (ENSMAUG00000017660) #9	Bhlhe23 (ENSMAUG00000009252) #10	Slc17a9 (ENSMAUG00000019462) #11	Dido1 (ENSMAUG00000016487) #13	Tcfl5 (ENSMAUG00000015318) #14	Col9a3 (ENSMAUG00000012721) #15	Ogfr (ENSMAUG00000018534) #16	Mrgbp (ENSMAUG00000017237) #17	Ntsr1 (ENSMAUG00000017871) #18	Slco4a1 (ENSMAUG00000009594) #20	Gata5 (ENSMAUG00000004902) #22	Rbbp8nl (ENSMAUG00000009217) #23	Lama5 (ENSMAUG00000015139) #26	ENSMAUG00000021991 #27	Osbpl2 (ENSMAUG00000014762) #28	Hrh3 (ENSMAUG00000012652) #29	Mtg2 (ENSMAUG00000018040) #30	Ss18l1 (ENSMAUG00000016777) #31	Psma7 (ENSMAUG00000011223) #32	Lsm14b (ENSMAUG00000020700) #33	Taf4 (ENSMAUG00000015258) #34	Cdh4 (ENSMAUG00000001328) #35	Cdh26 (ENSMAUG00000000843) #36	Fam217b (ENSMAUG00000018766)	Ppp1r3d (ENSMAUG00000008145) #37	ENSMAUG00000006215
Chinese hamster chok1gshd	MODERN SPECIES	185																Gata5 (ENSCGRG00001007839) #22	Rbbp8nl (ENSCGRG00001007442) #23
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00890000139515	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT00390000014718 #19	ENSGT01080000257410.C #20	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.o.b.f #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000161589 #36	ENSGT00940000154543.a
Prairie vole	MODERN SPECIES	357	ENSMOCG00000022336	Arfgap1 (ENSMOCG00000000921)	Nkain4 (ENSMOCG00000021378) #7	Birc7 (ENSMOCG00000007072) #8	Ythdf1 (ENSMOCG00000013573) #9	Bhlhe23 (ENSMOCG00000010535) #10	Slc17a9 (ENSMOCG00000021060) #11	Gid8 (ENSMOCG00000022789) #12	Dido1 (ENSMOCG00000016348) #13	Tcfl5 (ENSMOCG00000013113) #14	Col9a3 (ENSMOCG00000008409) #15	Ogfr (ENSMOCG00000014592) #16	Mrgbp (ENSMOCG00000000356) #17	Ntsr1 (ENSMOCG00000006208) #18	Slco4a1 (ENSMOCG00000018880) #20	Gata5 (ENSMOCG00000017810) #22	Rbbp8nl (ENSMOCG00000019010) #23	Cables2 (ENSMOCG00000022984) #24	ENSMOCG00000021976 #25	Lama5 (ENSMOCG00000017230) #26	ENSMOCG00000014522 #27	Osbpl2 (ENSMOCG00000021030) #28	Hrh3 (ENSMOCG00000019433) #29	Mtg2 (ENSMOCG00000018038) #30	Ss18l1 (ENSMOCG00000015419) #31	ENSMOCG00000000346 #32	ENSMOCG00000020600 #33	Taf4 (ENSMOCG00000007554) #34	Cdh4 (ENSMOCG00000021512) #35	Cdh26 (ENSMOCG00000015531) #36	Fam217b (ENSMOCG00000014566)
Northern American deer mouse	MODERN SPECIES	17	Arfgap1 (ENSPEMG00000020266)	Nkain4 (ENSPEMG00000020232) #7	Birc7 (ENSPEMG00000020215) #8	Ythdf1 (ENSPEMG00000020199) #9	Bhlhe23 (ENSPEMG00000013766) #10	Slc17a9 (ENSPEMG00000020148) #11	Gid8 (ENSPEMG00000020136) #12	Dido1 (ENSPEMG00000020026) #13	Tcfl5 (ENSPEMG00000019973) #14	Col9a3 (ENSPEMG00000019951) #15	Ogfr (ENSPEMG00000019927) #16	Mrgbp (ENSPEMG00000030337) #17	Ntsr1 (ENSPEMG00000019912) #18	ENSPEMG00000031188 #19	Slco4a1 (ENSPEMG00000019875) #20	Gata5 (ENSPEMG00000009349) #22	Rbbp8nl (ENSPEMG00000008846) #23	Cables2 (ENSPEMG00000014665) #24	ENSPEMG00000012806 #25	ENSPEMG00000026336 #26	ENSPEMG00000020024 #27	Osbpl2 (ENSPEMG00000019925) #28	Hrh3 (ENSPEMG00000008738) #29	Mtg2 (ENSPEMG00000008216) #30	Ss18l1 (ENSPEMG00000002000) #31	ENSPEMG00000000274 #32	Lsm14b (ENSPEMG00000017688) #33	Taf4 (ENSPEMG00000015031) #34	Cdh4 (ENSPEMG00000013577) #35	Cdh26 (ENSPEMG00000001082) #36	Fam217b (ENSPEMG00000026646)
Lesser Egyptian jerboa	MODERN SPECIES	171	Arfgap1 (ENSJJAG00000015383)	Nkain4 (ENSJJAG00000014525) #7	Birc7 (ENSJJAG00000014210) #8	Ythdf1 (ENSJJAG00000013589) #9	Bhlhe23 (ENSJJAG00000013438) #10	ENSJJAG00000001169	Slc17a9 (ENSJJAG00000000563) #11	Gid8 (ENSJJAG00000000120) #12	Dido1 (ENSJJAG00000022740) #13	ENSJJAG00000022001 #14	Col9a3 (ENSJJAG00000020792) #15	Ogfr (ENSJJAG00000020054) #16	Mrgbp (ENSJJAG00000019784) #17	Ntsr1 (ENSJJAG00000019264) #18	Slco4a1 (ENSJJAG00000018715) #20	Gata5 (ENSJJAG00000018164) #22	Cables2 (ENSJJAG00000017409) #24	Rps21 (ENSJJAG00000016454) #25	Lama5 (ENSJJAG00000014033) #26	ENSJJAG00000011363 #27	Osbpl2 (ENSJJAG00000011104) #28	Hrh3 (ENSJJAG00000010764) #29	Mtg2 (ENSJJAG00000010435) #30	Ss18l1 (ENSJJAG00000009378) #31	ENSJJAG00000008311 #32	Lsm14b (ENSJJAG00000012728) #33	Taf4 (ENSJJAG00000011875) #34	Cdh4 (ENSJJAG00000010912) #35	Cdh26 (ENSJJAG00000007415) #36	Fam217b (ENSJJAG00000004859)	ENSJJAG00000002434
Kangaroo rat	MODERN SPECIES	448	Kcnq2 (ENSDORG00000011128)	Chrna4 (ENSDORG00000023973)	ENSDORG00000015431	Arfgap1 (ENSDORG00000010660)	Nkain4 (ENSDORG00000001799) #7	Birc7 (ENSDORG00000025467) #8	Ythdf1 (ENSDORG00000002879) #9	Gid8 (ENSDORG00000003411) #12	ENSDORG00000011113 #13	Tcfl5 (ENSDORG00000004511) #14	Col9a3 (ENSDORG00000004509) #15	ENSDORG00000030204 #16	ENSDORG00000027453 #17	Ntsr1 (ENSDORG00000025445) #18	Slco4a1 (ENSDORG00000001161) #20	ENSDORG00000026178 #22	Rbbp8nl (ENSDORG00000007635) #23	ENSDORG00000025770 #24	Rps21 (ENSDORG00000007632) ##25	Lama5 (ENSDORG00000016589) #26	ENSDORG00000016587 #27	Osbpl2 (ENSDORG00000016585) #28	Hrh3 (ENSDORG00000003326) #29	Mtg2 (ENSDORG00000003325) #30	Ss18l1 (ENSDORG00000003324) #31	Psma7 (ENSDORG00000016684) #32	Lsm14b (ENSDORG00000016683) #33	Taf4 (ENSDORG00000006800) #34	Cdh4 (ENSDORG00000000209) #35
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00940000163709	ENSGT00890000139515	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT01080000257410.C #20	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.o.b.i.b #25	ENSGT00390000017515.o.b.j #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000154543.a
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000159329	ENSGT00940000163709	ENSGT00890000139515	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT01080000257410.C #20	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.p ##25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000154543.a	ENSGT00940000161921 #37
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000159329	ENSGT00940000163709	ENSGT00890000139515	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT01080000257410.C #20	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.p ##25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379.a #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000154543.a	ENSGT00940000161921 #37
Marmotini_b	ANCESTRAL SPECIES	25	ENSGT00940000159329	ENSGT00940000163709	ENSGT00890000139515	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000162992 #10	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT01080000257410.C #20	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b #24	ENSGT00390000017515.p ##25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379.a #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000154543.a	ENSGT00940000161921 #37
Arctic ground squirrel	MODERN SPECIES	372					YTHDF1 (ENSUPAG00010009771) #9	BHLHE23 (ENSUPAG00010009763) #10	SLC17A9 (ENSUPAG00010009742) #11	GID8 (ENSUPAG00010009732) #12	DIDO1 (ENSUPAG00010009662) #13	TCFL5 (ENSUPAG00010009652) #14	ENSUPAG00010009608 #15	OGFR (ENSUPAG00010009496) #16	MRGBP (ENSUPAG00010009485) #17	NTSR1 (ENSUPAG00010009468) #18	SLCO4A1 (ENSUPAG00010009439) #20	GATA5 (ENSUPAG00010009409) #22	RBBP8NL (ENSUPAG00010009390) #23	CABLES2 (ENSUPAG00010009371) #24	ENSUPAG00010009364 ##25	ADRM1 (ENSUPAG00010008614) #27	OSBPL2 (ENSUPAG00010008572) #28	HRH3 (ENSUPAG00010008523) #29	MTG2 (ENSUPAG00010008487) #30	SS18L1 (ENSUPAG00010008474) #31	PSMA7 (ENSUPAG00010008463) #32	LSM14B (ENSUPAG00010008440) #33	TAF4 (ENSUPAG00010008419) #34	CDH4 (ENSUPAG00010008395) #35
Squirrel	MODERN SPECIES	114	CHRNA4 (ENSSTOG00000028017)	COL20A1 (ENSSTOG00000014595)	ARFGAP1 (ENSSTOG00000022151)	BIRC7 (ENSSTOG00000034074) #8	YTHDF1 (ENSSTOG00000023001) #9	ENSSTOG00000030778 #10	SLC17A9 (ENSSTOG00000008798) #11	GID8 (ENSSTOG00000025077) #12	DIDO1 (ENSSTOG00000012318) #13	TCFL5 (ENSSTOG00000026350) #14	ENSSTOG00000021578 #15	ENSSTOG00000020474 #16	MRGBP (ENSSTOG00000012953) #17	NTSR1 (ENSSTOG00000026120) #18	SLCO4A1 (ENSSTOG00000019826) #20	GATA5 (ENSSTOG00000010454) #22	RBBP8NL (ENSSTOG00000024557) #23	CABLES2 (ENSSTOG00000001031) #24	RPS21 (ENSSTOG00000001029) ##25	LAMA5 (ENSSTOG00000026668) #26	ADRM1 (ENSSTOG00000002691) #27	OSBPL2 (ENSSTOG00000011355) #28	HRH3 (ENSSTOG00000021350) #29	MTG2 (ENSSTOG00000024521) #30	SS18L1 (ENSSTOG00000022485) #31	PSMA7 (ENSSTOG00000012489) #32	LSM14B (ENSSTOG00000020482) #33	TAF4 (ENSSTOG00000014768) #34	CDH4 (ENSSTOG00000024476) #35	FAM217B (ENSSTOG00000028925)	PPP1R3D (ENSSTOG00000027059) #37
Alpin marmot	MODERN SPECIES		KCNQ2 (ENSMMMG00000002019)	CHRNA4 (ENSMMMG00000002798)	COL20A1 (ENSMMMG00000002849)	ARFGAP1 (ENSMMMG00000003181)	BIRC7 (ENSMMMG00000003407) #8	YTHDF1 (ENSMMMG00000003425) #9	SLC17A9 (ENSMMMG00000003461) #11	GID8 (ENSMMMG00000003488) #12	DIDO1 (ENSMMMG00000003510) #13	TCFL5 (ENSMMMG00000003663) #14	ENSMMMG00000003673 #15	OGFR (ENSMMMG00000003753) #16	MRGBP (ENSMMMG00000003862) #17	NTSR1 (ENSMMMG00000003907) #18	SLCO4A1 (ENSMMMG00000003911) #20	GATA5 (ENSMMMG00000003966) #22	RBBP8NL (ENSMMMG00000004035) #23	CABLES2 (ENSMMMG00000004085) #24	RPS21 (ENSMMMG00000004100) ##25	ADRM1 (ENSMMMG00000004549) #27	OSBPL2 (ENSMMMG00000004561) #28	HRH3 (ENSMMMG00000004618) #29	ENSMMMG00000004646 #30	SS18L1 (ENSMMMG00000004657) #31	ENSMMMG00000004668 #32	LSM14B (ENSMMMG00000004672) #33	ENSMMMG00000004719 #34	CDH4 (ENSMMMG00000004760) #35	FAM217B (ENSMMMG00000004800)	PPP1R3D (ENSMMMG00000004802) #37	ENSMMMG00000004806
Eurasian red squirrel	MODERN SPECIES	11	CHRNA4 (ENSSVLG00005004453)	ENSSVLG00005004184	ARFGAP1 (ENSSVLG00005003989)	BIRC7 (ENSSVLG00005003913) #8	YTHDF1 (ENSSVLG00005003892) #9	BHLHE23 (ENSSVLG00005003872) #10	SLC17A9 (ENSSVLG00005003839) #11	GID8 (ENSSVLG00005003819) #12	ENSSVLG00005003753 #13	TCFL5 (ENSSVLG00005003713) #14	COL9A3 (ENSSVLG00005003650)	ENSSVLG00005003605 #16	MRGBP (ENSSVLG00005003577) #17	NTSR1 (ENSSVLG00005003558) #18	SLCO4A1 (ENSSVLG00005003525) #20	GATA5 (ENSSVLG00005003441) #22	RBBP8NL (ENSSVLG00005003383) #23	CABLES2 (ENSSVLG00005003344) #24	ENSSVLG00005003318 #25	ENSSVLG00005003084 #27	OSBPL2 (ENSSVLG00005003034) #28	HRH3 (ENSSVLG00005003009) #29	ENSSVLG00005002984 #30	SS18L1 (ENSSVLG00005002951) #31	ENSSVLG00005002918 #32	LSM14B (ENSSVLG00005002868) #33	TAF4 (ENSSVLG00005002767) #34	CDH4 (ENSSVLG00005002684) #35	ENSSVLG00005002662	PPP1R3D (ENSSVLG00005002650) #37	ENSSVLG00005002613
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000159329	ENSGT00940000153769.G	ENSGT00890000139515	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT01080000257410.C #20	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b.i #24	ENSGT00390000017515.o.b.i.b #25	ENSGT00400000022086.b.b.j #24	ENSGT00390000017515.o.b.j #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	6	ENSHGLG00000042444	PPDPF (ENSHGLG00000014857)	EEF1A2 (ENSHGLG00000014996)	ENSHGLG00000016521	ARFGAP1 (ENSHGLG00000008445)	ENSHGLG00000041458	YTHDF1 (ENSHGLG00000006585) #9	BHLHE23 (ENSHGLG00000020693) #10	GID8 (ENSHGLG00000013122) #12	ENSHGLG00000014809 #13	TCFL5 (ENSHGLG00000011606) #14	ENSHGLG00000005944 #15	ENSHGLG00000046607 #16	MRGBP (ENSHGLG00000042672) #17	NTSR1 (ENSHGLG00000037154) #18	ENSHGLG00000006232 #22	ENSHGLG00000040253 #22	ENSHGLG00000044047 #24	RPS21 (ENSHGLG00000040061) #25	ADRM1 (ENSHGLG00000005649) #27	OSBPL2 (ENSHGLG00000015027) #28	ENSHGLG00000046738 #29	ENSHGLG00000049601 #30	SS18L1 (ENSHGLG00000006752) #31	ENSHGLG00000013634 #32	LSM14B (ENSHGLG00000015055) #33	ENSHGLG00000038944 #35	PPP1R3D (ENSHGLG00000033683) #37	EDN3 (ENSHGLG00000018677)	ZNF831 (ENSHGLG00000010468)	ENSHGLG00000009253
Naked mole-rat female	MODERN SPECIES	6	PPDPF (ENSHGLG00000014857)	EEF1A2 (ENSHGLG00000014996)	ENSHGLG00000016521	ARFGAP1 (ENSHGLG00000008445)	ENSHGLG00000041458	YTHDF1 (ENSHGLG00000006585) #9	BHLHE23 (ENSHGLG00000020693) #10	GID8 (ENSHGLG00000013122) #12	ENSHGLG00000014809 #13	TCFL5 (ENSHGLG00000011606) #14	ENSHGLG00000005944 #15	ENSHGLG00000046607 #16	MRGBP (ENSHGLG00000042672) #17	NTSR1 (ENSHGLG00000037154) #18	ENSHGLG00000006232 #22	ENSHGLG00000040253 #22	ENSHGLG00000044047 #24	RPS21 (ENSHGLG00000040061) #25	ADRM1 (ENSHGLG00000005649) #27	OSBPL2 (ENSHGLG00000015027) #28	ENSHGLG00000046738 #29	ENSHGLG00000049601 #30	SS18L1 (ENSHGLG00000006752) #31	ENSHGLG00000013634 #32	LSM14B (ENSHGLG00000015055) #33	ENSHGLG00000038944 #35	PPP1R3D (ENSHGLG00000033683) #37	EDN3 (ENSHGLG00000018677)	ZNF831 (ENSHGLG00000010468)	ENSHGLG00000009253	ENSHGLG00000008231
Hystricomorpha_a	ANCESTRAL SPECIES	66	ENSGT00940000159329	ENSGT00940000153769.G	ENSGT00890000139515	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT01080000257410.C #20	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b.i #24	ENSGT00390000017515.o.b.i.b #25	ENSGT00390000017515.o.b.j #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000154543.a
Hystricomorpha_b	ANCESTRAL SPECIES	83	ENSGT00940000159329	ENSGT00940000153769.G	ENSGT00890000139515	ENSGT00940000157989.b #7	ENSGT00940000160406 #8	ENSGT00940000156911 #9	ENSGT00940000158186 #11	ENSGT00390000015162 #12	ENSGT00940000155532 #13	ENSGT00390000002821 #14	ENSGT00940000161930 #15	ENSGT00390000018730.A #16	ENSGT00390000007823 #17	ENSGT01100000263518.A.a.a.a #18	ENSGT01080000257410.C #20	ENSGT00940000160139 #22	ENSGT00530000063835.a #23	ENSGT00400000022086.b.b.i #24	ENSGT00390000017515.o.b.i.b #25	ENSGT00390000017515.o.b.j #25	ENSGT00940000156537 #26	ENSGT00390000013839 #27	ENSGT00940000158762 #28	ENSGT00940000161502 #29	ENSGT00940000157379 #30	ENSGT00940000159853 #31	ENSGT00940000159695 #32	ENSGT00940000156010 #33	ENSGT00390000011620.a.a.b #34	ENSGT00940000158073 #35	ENSGT00940000154543.a
Long-tailed chinchilla	MODERN SPECIES	235	ENSCLAG00000002569	ARFGAP1 (ENSCLAG00000003171)	NKAIN4 (ENSCLAG00000003530) #7	BIRC7 (ENSCLAG00000003588) #8	YTHDF1 (ENSCLAG00000005989) #9	SLC17A9 (ENSCLAG00000006378) #11	GID8 (ENSCLAG00000006562) #12	DIDO1 (ENSCLAG00000006615) #13	ENSCLAG00000007594 #14	ENSCLAG00000007710 #15	OGFR (ENSCLAG00000008130) #16	ENSCLAG00000002627 #17	NTSR1 (ENSCLAG00000002645) #18	SLCO4A1 (ENSCLAG00000007190) #20	CABLES2 (ENSCLAG00000007291) #24	GATA5 (ENSCLAG00000007559) #22	RBBP8NL (ENSCLAG00000006833) #23	RPS21 (ENSCLAG00000007566) #25	LAMA5 (ENSCLAG00000009241) #26	ADRM1 (ENSCLAG00000005222) #27	OSBPL2 (ENSCLAG00000005408) #28	HRH3 (ENSCLAG00000005909) #29	MTG2 (ENSCLAG00000002886) #30	SS18L1 (ENSCLAG00000003078) #31	PSMA7 (ENSCLAG00000003150) #32	LSM14B (ENSCLAG00000003186) #33	TAF4 (ENSCLAG00000003706) #34	CDH4 (ENSCLAG00000003861) #35	SYCP2 (ENSCLAG00000004302)	PHACTR3 (ENSCLAG00000002652)
Degu	MODERN SPECIES	235	ENSODEG00000004143	ARFGAP1 (ENSODEG00000004250)	NKAIN4 (ENSODEG00000004313) #7	BIRC7 (ENSODEG00000004350) #8	ENSODEG00000004380 #9	SLC17A9 (ENSODEG00000004413) #11	ENSODEG00000004429 #12	DIDO1 (ENSODEG00000004463) #13	TCFL5 (ENSODEG00000004537) #14	ENSODEG00000004560	ENSODEG00000004588 #15	OGFR (ENSODEG00000004656) #16	MRGBP (ENSODEG00000004674) #17	NTSR1 (ENSODEG00000004689) #18	SLCO4A1 (ENSODEG00000004720) #20	GATA5 (ENSODEG00000003615) #22	RBBP8NL (ENSODEG00000003634) #23	CABLES2 (ENSODEG00000003674) #24	ENSODEG00000003715 #25	LAMA5 (ENSODEG00000003782) #26	ADRM1 (ENSODEG00000003910) #27	OSBPL2 (ENSODEG00000003927) #28	HRH3 (ENSODEG00000003961) #29	MTG2 (ENSODEG00000004006) #30	SS18L1 (ENSODEG00000004038) #31	PSMA7 (ENSODEG00000004073) #32	LSM14B (ENSODEG00000004099) #33	TAF4 (ENSODEG00000004136) #34	CDH4 (ENSODEG00000004169) #35	FAM217B (ENSODEG00000004205)	PPP1R3D (ENSODEG00000004216) #37
Guinea pig	MODERN SPECIES	119	CHRNA4 (ENSCPOG00000010559)	ENSCPOG00000021624	ARFGAP1 (ENSCPOG00000025055)	NKAIN4 (ENSCPOG00000005586) #7	BIRC7 (ENSCPOG00000020366) #8	YTHDF1 (ENSCPOG00000010202) #9	SLC17A9 (ENSCPOG00000001082) #11	GID8 (ENSCPOG00000007888) #12	DIDO1 (ENSCPOG00000004884) #13	TCFL5 (ENSCPOG00000020307) #14	ENSCPOG00000002720 #15	OGFR (ENSCPOG00000003143) #16	MRGBP (ENSCPOG00000020272) #17	NTSR1 (ENSCPOG00000033878) #18	SLCO4A1 (ENSCPOG00000015749) #20	GATA5 (ENSCPOG00000030979) #22	RBBP8NL (ENSCPOG00000030864) #23	CABLES2 (ENSCPOG00000001967) #24	RPS21 (ENSCPOG00000001965) #25	LAMA5 (ENSCPOG00000009593) #26	ADRM1 (ENSCPOG00000009588) #27	OSBPL2 (ENSCPOG00000006907) #28	HRH3 (ENSCPOG00000007127) #29	MTG2 (ENSCPOG00000023202) #30	SS18L1 (ENSCPOG00000002513) #31	PSMA7 (ENSCPOG00000014168) #32	LSM14B (ENSCPOG00000038080) #33	TAF4 (ENSCPOG00000030707) #34	CDH4 (ENSCPOG00000005520) #35	FAM217B (ENSCPOG00000032600)	ENSCPOG00000009549
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00940000160139 #22
Pika	MODERN SPECIES	1058																GATA5 (ENSOPRG00000013119) #22
Tree shrew	MODERN SPECIES	1337																ENSTBEG00000006150 #22